Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095830 | sp|F4HZB2|BCHA1_ARATH | 66.667 | 558 | 153 | 3 | 2 | 526 | 747 | 1304 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095830 | G7ICR2 | 92.115 | 558 | 12 | 2 | 1 | 526 | 750 | 1307 | 0.0 | 1035 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035320 | Msa0095830 | 0.816017 | 6.868033e-52 | -8.615850e-47 |
| Msa0095830 | Msa0095840 | 0.808417 | 3.129243e-50 | -8.615850e-47 |
| Msa0095830 | Msa0179250 | 0.823849 | 1.109567e-53 | -8.615850e-47 |
| Msa0095830 | Msa0269800 | 0.837453 | 5.151989e-57 | -8.615850e-47 |
| Msa0095830 | Msa0434470 | 0.801077 | 1.067204e-48 | -8.615850e-47 |
| Msa0095830 | Msa0467310 | 0.833086 | 6.525830e-56 | -8.615850e-47 |
| Msa0095830 | Msa0474550 | 0.806216 | 9.161745e-50 | -8.615850e-47 |
| Msa0095830 | Msa0524350 | 0.800938 | 1.139775e-48 | -8.615850e-47 |
| Msa0095830 | Msa0570580 | 0.858102 | 1.037294e-62 | -8.615850e-47 |
| Msa0095830 | Msa0572050 | 0.829764 | 4.288555e-55 | -8.615850e-47 |
| Msa0095830 | Msa0685620 | 0.865658 | 5.035380e-65 | -8.615850e-47 |
| Msa0095830 | Msa0698940 | 0.828161 | 1.048642e-54 | -8.615850e-47 |
| Msa0095830 | Msa0705500 | 0.811889 | 5.586920e-51 | -8.615850e-47 |
| Msa0095830 | Msa0827500 | 0.865674 | 4.976587e-65 | -8.615850e-47 |
| Msa0095830 | Msa0834290 | 0.805868 | 1.084206e-49 | -8.615850e-47 |
| Msa0095830 | Msa1027780 | 0.848074 | 7.726396e-60 | -8.615850e-47 |
| Msa0095830 | Msa1134640 | 0.851612 | 7.925261e-61 | -8.615850e-47 |
| Msa0095830 | Msa1204330 | 0.854264 | 1.382141e-61 | -8.615850e-47 |
| Msa0095830 | Msa1237720 | 0.810098 | 1.364361e-50 | -8.615850e-47 |
| Msa0095830 | Msa1256070 | 0.849555 | 2.998766e-60 | -8.615850e-47 |
| Msa0095830 | Msa1317920 | 0.872445 | 3.164249e-67 | -8.615850e-47 |
| Msa0095830 | Msa1317930 | 0.822443 | 2.362053e-53 | -8.615850e-47 |
| Msa0095830 | Msa1404220 | 0.813434 | 2.564903e-51 | -8.615850e-47 |
| Msa0095830 | Msa1457470 | 0.824047 | 9.971280e-54 | -8.615850e-47 |
| Msa0095830 | Msa1464540 | 0.828013 | 1.137928e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095830 | MtrunA17_Chr1g0185101 | 92.115 | 558 | 12 | 2 | 1 | 526 | 750 | 1307 | 0.0 | 1035 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095830 | AT1G03060.4 | 66.667 | 558 | 153 | 3 | 2 | 526 | 747 | 1304 | 0.0 | 751 |
| Msa0095830 | AT1G03060.1 | 66.667 | 558 | 153 | 3 | 2 | 526 | 747 | 1304 | 0.0 | 751 |
| Msa0095830 | AT1G03060.2 | 66.667 | 558 | 153 | 3 | 2 | 526 | 746 | 1303 | 0.0 | 751 |
| Msa0095830 | AT1G03060.3 | 66.667 | 558 | 153 | 3 | 2 | 526 | 746 | 1303 | 0.0 | 751 |
| Msa0095830 | AT4G02660.2 | 62.970 | 559 | 173 | 4 | 2 | 526 | 750 | 1308 | 0.0 | 696 |
| Msa0095830 | AT4G02660.3 | 55.814 | 559 | 164 | 5 | 2 | 526 | 750 | 1259 | 0.0 | 587 |
| Msa0095830 | AT4G02660.1 | 55.814 | 559 | 164 | 5 | 2 | 526 | 750 | 1259 | 0.0 | 587 |
Find 120 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCTCTTGCACCATTTA+TGG | 0.083209 | 1_3:-1195217 | Msa0095830:CDS |
| GTTGCATATGTTTATCTAAA+TGG | 0.117268 | 1_3:-1194784 | Msa0095830:CDS |
| CGCTCTTTATCAGGATTAAT+TGG | 0.128331 | 1_3:+1195783 | None:intergenic |
| ACAATCCACCCCTTTCTTTC+GGG | 0.212055 | 1_3:-1195523 | Msa0095830:CDS |
| TACAATCCACCCCTTTCTTT+CGG | 0.241102 | 1_3:-1195524 | Msa0095830:CDS |
| GTCTCTCCTGCAGTCCATTT+GGG | 0.250311 | 1_3:+1195019 | None:intergenic |
| CTCATATCCATCTCCATAAA+TGG | 0.260356 | 1_3:+1195204 | None:intergenic |
| GATTGGGCATGCTGCCATTC+AGG | 0.264009 | 1_3:-1195178 | Msa0095830:CDS |
| GGTGAGGCTTTCGAGATTAA+AGG | 0.267214 | 1_3:+1195650 | None:intergenic |
| TGGAAGTCCTCGGTTCTTAC+AGG | 0.279185 | 1_3:-1195465 | Msa0095830:intron |
| TTGTAAACTCGCTCTTTATC+AGG | 0.283549 | 1_3:+1195774 | None:intergenic |
| TGTCTCTCCTGCAGTCCATT+TGG | 0.283747 | 1_3:+1195018 | None:intergenic |
| TTGGAAGAGACAACTTTAGA+TGG | 0.313715 | 1_3:+1195054 | None:intergenic |
| CTGGTTATTCATTTGTTTGT+TGG | 0.315469 | 1_3:-1195122 | Msa0095830:CDS |
| CATGGAGTGTTGTGAGCAAT+AGG | 0.334212 | 1_3:+1196138 | None:intergenic |
| GGGAGCACTGTGGCGTATCT+TGG | 0.341593 | 1_3:-1196210 | Msa0095830:CDS |
| TGATGCAAAATGCGACACTA+TGG | 0.352029 | 1_3:-1196231 | Msa0095830:CDS |
| TTCGATCTTCTCTGTGAGTC+TGG | 0.352889 | 1_3:-1195963 | Msa0095830:CDS |
| GACTCGTTCTCAATTGCATT+TGG | 0.367136 | 1_3:+1195837 | None:intergenic |
| ATTATTGATGTTCACTCCTA+TGG | 0.369631 | 1_3:-1195721 | Msa0095830:CDS |
| AACAGTCCAGCAAGAGCATT+TGG | 0.376034 | 1_3:+1194817 | None:intergenic |
| AGTTACAACACGCAACAAAT+AGG | 0.379818 | 1_3:+1196052 | None:intergenic |
| GTGAGGCTTTCGAGATTAAA+GGG | 0.380685 | 1_3:+1195651 | None:intergenic |
| AAACCATTGCAAGTCACAAT+TGG | 0.384686 | 1_3:-1194712 | Msa0095830:CDS |
| TTAAGGCACACTGGGAAGTT+AGG | 0.388397 | 1_3:-1194757 | Msa0095830:CDS |
| TTTATCTAAATGGGAAGTTA+AGG | 0.389337 | 1_3:-1194774 | Msa0095830:CDS |
| CTCGAAAGCCTCACCTCAAC+AGG | 0.389820 | 1_3:-1195642 | Msa0095830:intron |
| ATTTGGGCCAGAGCGCTTCT+TGG | 0.390575 | 1_3:+1195035 | None:intergenic |
| TGCTGCCATTCAGGTTTCGT+TGG | 0.390614 | 1_3:-1195169 | Msa0095830:CDS |
| CAGGCTCATCCTGAGGAGTT+AGG | 0.392464 | 1_3:-1196323 | Msa0095830:CDS |
| TTGCATATGTTTATCTAAAT+GGG | 0.394281 | 1_3:-1194783 | Msa0095830:CDS |
| GGCCTGTGGTGGTGGTAGTA+TGG | 0.396381 | 1_3:-1194521 | Msa0095830:CDS |
| AGCAAACCAAATGCTCTTGC+TGG | 0.399135 | 1_3:-1194823 | Msa0095830:CDS |
| TGGAATGGTAACCAGTGCTT+TGG | 0.403779 | 1_3:-1196276 | Msa0095830:CDS |
| CGATAAGACAGAAGAATTGC+TGG | 0.404654 | 1_3:+1194900 | None:intergenic |
| TTTAGACTTAATTGAAAAGC+TGG | 0.406971 | 1_3:-1195685 | Msa0095830:CDS |
| GAGATGGATATGAGCAAGAT+TGG | 0.415654 | 1_3:-1195195 | Msa0095830:CDS |
| AAGAAGCGCTCTGGCCCAAA+TGG | 0.420929 | 1_3:-1195033 | Msa0095830:CDS |
| TTGTTGCGTGTTGTAACTGC+TGG | 0.429153 | 1_3:-1196047 | Msa0095830:CDS |
| CTCTGGCCCAAATGGACTGC+AGG | 0.435676 | 1_3:-1195025 | Msa0095830:CDS |
| GGAATGGTAACCAGTGCTTT+GGG | 0.437564 | 1_3:-1196275 | Msa0095830:CDS |
| AGCGTCTAAAGAATCTAATA+TGG | 0.439344 | 1_3:+1194498 | None:intergenic |
| ATCTGTTTCATGTATATACT+TGG | 0.442021 | 1_3:-1194601 | Msa0095830:CDS |
| CCAAAGTGATGGTGGAGACT+TGG | 0.444717 | 1_3:-1196111 | Msa0095830:CDS |
| GGAGCACTGTGGCGTATCTT+GGG | 0.444817 | 1_3:-1196209 | Msa0095830:CDS |
| CTTCAATGCACGAGAGAGTA+AGG | 0.450103 | 1_3:+1195492 | None:intergenic |
| GTCTCTTCCAAGAAGCGCTC+TGG | 0.465363 | 1_3:-1195042 | Msa0095830:CDS |
| TCTTGCACCATTTATGGAGA+TGG | 0.470622 | 1_3:-1195211 | Msa0095830:CDS |
| GCTGCCATTCAGGTTTCGTT+GGG | 0.471614 | 1_3:-1195168 | Msa0095830:CDS |
| TTTCGTTGGGTGAAAGATCA+TGG | 0.471815 | 1_3:-1195155 | Msa0095830:CDS |
| AGATCATGGCCTCCGGCTGC+TGG | 0.480553 | 1_3:-1195141 | Msa0095830:CDS |
| GGAAGATGAACCCGAAAGAA+AGG | 0.481065 | 1_3:+1195513 | None:intergenic |
| TCATATAATTGTTGAAATGA+TGG | 0.482142 | 1_3:-1195277 | Msa0095830:CDS |
| CCACCACCACAGGCCTGGTT+AGG | 0.485933 | 1_3:+1194529 | None:intergenic |
| AACCATTGCAAGTCACAATT+GGG | 0.490274 | 1_3:-1194711 | Msa0095830:CDS |
| GAGTAAGAATGCCATCCTCC+TGG | 0.491185 | 1_3:+1194929 | None:intergenic |
| CATGGTATCTATAGGTTGTG+TGG | 0.491367 | 1_3:-1195560 | Msa0095830:intron |
| CACCATCACTTTGGAACCCA+TGG | 0.498223 | 1_3:+1196120 | None:intergenic |
| CTATTGCTCACAACACTCCA+TGG | 0.499406 | 1_3:-1196137 | Msa0095830:CDS |
| CCAAGTCTCCACCATCACTT+TGG | 0.499434 | 1_3:+1196111 | None:intergenic |
| CCTAACCAGGCCTGTGGTGG+TGG | 0.501024 | 1_3:-1194529 | Msa0095830:CDS |
| ATTGAAAAGCTGGCTCGTGC+TGG | 0.504485 | 1_3:-1195675 | Msa0095830:CDS |
| TCCTGAGGAGTTAGGCGTGT+TGG | 0.507660 | 1_3:-1196315 | Msa0095830:CDS |
| GAAGATGAACCCGAAAGAAA+GGG | 0.512180 | 1_3:+1195514 | None:intergenic |
| ATACTTGGTAGAGGATATAG+AGG | 0.517398 | 1_3:-1194586 | Msa0095830:CDS |
| TCAGATATGTTATGCAAATG+AGG | 0.528210 | 1_3:-1195314 | Msa0095830:CDS |
| TTGAAGATTGTGGAAGTCCT+CGG | 0.529432 | 1_3:-1195475 | Msa0095830:CDS |
| CTATGCTGAACTTTATCTCC+AGG | 0.530011 | 1_3:-1194947 | Msa0095830:CDS |
| ATGGAGTGTTGTGAGCAATA+GGG | 0.531163 | 1_3:+1196139 | None:intergenic |
| TACTACCACCACCACAGGCC+TGG | 0.532649 | 1_3:+1194524 | None:intergenic |
| AAAGAGCGAGTTTACAATGC+TGG | 0.534731 | 1_3:-1195768 | Msa0095830:CDS |
| TGGAAGAGACAACTTTAGAT+GGG | 0.537436 | 1_3:+1195055 | None:intergenic |
| TTTGAGGAAGTGCTTACACC+TGG | 0.538637 | 1_3:-1194628 | Msa0095830:CDS |
| ACCAACACGCCTAACTCCTC+AGG | 0.539913 | 1_3:+1196314 | None:intergenic |
| TTCATGTATATACTTGGTAG+AGG | 0.541536 | 1_3:-1194595 | Msa0095830:CDS |
| GGGTGAAAGATCATGGCCTC+CGG | 0.543421 | 1_3:-1195148 | Msa0095830:CDS |
| ATCAGGATTAATTGGACCTG+AGG | 0.549190 | 1_3:+1195791 | None:intergenic |
| GTTTAGATCTGGAGGAAGGA+AGG | 0.550471 | 1_3:-1194870 | Msa0095830:CDS |
| AGATGGATATGAGCAAGATT+GGG | 0.551114 | 1_3:-1195194 | Msa0095830:CDS |
| CTCTCGTGCATTGAAGATTG+TGG | 0.551519 | 1_3:-1195485 | Msa0095830:CDS |
| GTCCCAATTGTGACTTGCAA+TGG | 0.561245 | 1_3:+1194709 | None:intergenic |
| TTCACCCAACGAAACCTGAA+TGG | 0.564614 | 1_3:+1195164 | None:intergenic |
| GTGACTTGCAATGGTTTACC+AGG | 0.567238 | 1_3:+1194718 | None:intergenic |
| TCTACAATTTGTACCTAACC+AGG | 0.567686 | 1_3:-1194542 | Msa0095830:CDS |
| TCAGGATTAATTGGACCTGA+GGG | 0.568147 | 1_3:+1195792 | None:intergenic |
| AATGGGAAGTTAAGGCACAC+TGG | 0.573438 | 1_3:-1194766 | Msa0095830:CDS |
| GGCCATACTACCACCACCAC+AGG | 0.574639 | 1_3:+1194519 | None:intergenic |
| CTCCATGGGTTCCAAAGTGA+TGG | 0.574967 | 1_3:-1196122 | Msa0095830:CDS |
| CATGGGTTCCAAAGTGATGG+TGG | 0.575471 | 1_3:-1196119 | Msa0095830:CDS |
| AATGGTTTACCAGGTGGAGA+GGG | 0.581031 | 1_3:+1194727 | None:intergenic |
| GATGCAAAATGCGACACTAT+GGG | 0.582808 | 1_3:-1196230 | Msa0095830:CDS |
| GAACTTTATCTCCAGGAGGA+TGG | 0.586765 | 1_3:-1194940 | Msa0095830:CDS |
| CAATGGTTTACCAGGTGGAG+AGG | 0.588252 | 1_3:+1194726 | None:intergenic |
| CGAGGGTTAGTGACTTAGCA+TGG | 0.591119 | 1_3:-1194672 | Msa0095830:CDS |
| GGATATTCACCCTCTCCACC+TGG | 0.594559 | 1_3:-1194736 | Msa0095830:CDS |
| TACATGAAACAGATACAGCC+AGG | 0.595170 | 1_3:+1194610 | None:intergenic |
| TCTGGTTTAGATCTGGAGGA+AGG | 0.596683 | 1_3:-1194874 | Msa0095830:CDS |
| GTACTGAGATCCCAAAGCAC+TGG | 0.597899 | 1_3:+1196265 | None:intergenic |
| AGAAAATACCTGTTGAGGTG+AGG | 0.598614 | 1_3:+1195634 | None:intergenic |
| ACAAATGAATAACCAGCAGC+CGG | 0.599086 | 1_3:+1195129 | None:intergenic |
| AGAGACAACTTTAGATGGGT+CGG | 0.602066 | 1_3:+1195059 | None:intergenic |
| ATGGGAAGTTAAGGCACACT+GGG | 0.603357 | 1_3:-1194765 | Msa0095830:CDS |
| GTACCTAACCAGGCCTGTGG+TGG | 0.606188 | 1_3:-1194532 | Msa0095830:CDS |
| TATTGCTCACAACACTCCAT+GGG | 0.611361 | 1_3:-1196136 | Msa0095830:CDS |
| CTGGAGATAAAGTTCAGCAT+AGG | 0.614514 | 1_3:+1194948 | None:intergenic |
| GTTTGCTGTGAATGACTGCA+AGG | 0.618086 | 1_3:+1194839 | None:intergenic |
| TAGATCTGGAGGAAGGAAGG+TGG | 0.647806 | 1_3:-1194867 | Msa0095830:CDS |
| TGAGGCTTTCGAGATTAAAG+GGG | 0.657844 | 1_3:+1195652 | None:intergenic |
| GGACATCAGTTAATAACACG+AGG | 0.661901 | 1_3:-1194690 | Msa0095830:CDS |
| ATGAACCCGAAAGAAAGGGG+TGG | 0.665805 | 1_3:+1195518 | None:intergenic |
| TACTTGGTAGAGGATATAGA+GGG | 0.667582 | 1_3:-1194585 | Msa0095830:CDS |
| TGCTGAACTTTATCTCCAGG+AGG | 0.669208 | 1_3:-1194944 | Msa0095830:CDS |
| AAGATGAACCCGAAAGAAAG+GGG | 0.672794 | 1_3:+1195515 | None:intergenic |
| AACGTAGAAAATACCTGTTG+AGG | 0.676006 | 1_3:+1195629 | None:intergenic |
| AATGAATAACCAGCAGCCGG+AGG | 0.686393 | 1_3:+1195132 | None:intergenic |
| CACCCTACCTGTAAGAACCG+AGG | 0.693526 | 1_3:+1195458 | None:intergenic |
| TTTGTACCTAACCAGGCCTG+TGG | 0.694396 | 1_3:-1194535 | Msa0095830:CDS |
| GACATCAGTTAATAACACGA+GGG | 0.707783 | 1_3:-1194689 | Msa0095830:CDS |
| ACTTGCAATGGTTTACCAGG+TGG | 0.733689 | 1_3:+1194721 | None:intergenic |
| GCGACACTATGGGAGCACTG+TGG | 0.790465 | 1_3:-1196220 | Msa0095830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAATTCAAATATAAATA+GGG | + | chr1_3:1195431-1195450 | None:intergenic | 10.0% |
| !! | ATTGTAATTCAAATATAAAT+AGG | + | chr1_3:1195432-1195451 | None:intergenic | 10.0% |
| !! | TTGTAATTCAAATATAAATA+GGG | + | chr1_3:1195431-1195450 | None:intergenic | 10.0% |
| !! | ATTGTAATTCAAATATAAAT+AGG | + | chr1_3:1195432-1195451 | None:intergenic | 10.0% |
| !! | TGTAATTCAAATATAAATAG+GGG | + | chr1_3:1195430-1195449 | None:intergenic | 15.0% |
| !!! | ACTTCAAAAAATTTTGAAAA+TGG | + | chr1_3:1195718-1195737 | None:intergenic | 15.0% |
| !! | TGTAATTCAAATATAAATAG+GGG | + | chr1_3:1195430-1195449 | None:intergenic | 15.0% |
| !!! | ACTTCAAAAAATTTTGAAAA+TGG | + | chr1_3:1195718-1195737 | None:intergenic | 15.0% |
| !! | TCATATAATTGTTGAAATGA+TGG | - | chr1_3:1195535-1195554 | Msa0095830:CDS | 20.0% |
| !!! | ATTTTAAGGATTTTTTCTGT+TGG | - | chr1_3:1195818-1195837 | Msa0095830:CDS | 20.0% |
| !! | TTGCATATGTTTATCTAAAT+GGG | - | chr1_3:1196029-1196048 | Msa0095830:CDS | 20.0% |
| !! | TCATATAATTGTTGAAATGA+TGG | - | chr1_3:1195535-1195554 | Msa0095830:CDS | 20.0% |
| !!! | ATTTTAAGGATTTTTTCTGT+TGG | - | chr1_3:1195818-1195837 | Msa0095830:CDS | 20.0% |
| !! | TTGCATATGTTTATCTAAAT+GGG | - | chr1_3:1196029-1196048 | Msa0095830:CDS | 20.0% |
| !!! | TTGGTTGAAATTTTGAAAAG+TGG | - | chr1_3:1194516-1194535 | Msa0095830:CDS | 25.0% |
| !!! | TGAAATTTTGAAAAGTGGAA+TGG | - | chr1_3:1194521-1194540 | Msa0095830:CDS | 25.0% |
| !! | TTCATTGAGTTTTTACGTAA+AGG | - | chr1_3:1194731-1194750 | Msa0095830:CDS | 25.0% |
| ! | TTTAGACTTAATTGAAAAGC+TGG | - | chr1_3:1195127-1195146 | Msa0095830:CDS | 25.0% |
| !! | ACAATACATTTCTGTTGATT+AGG | - | chr1_3:1195447-1195466 | Msa0095830:intron | 25.0% |
| ! | GTTGCATATGTTTATCTAAA+TGG | - | chr1_3:1196028-1196047 | Msa0095830:CDS | 25.0% |
| ! | TTTATCTAAATGGGAAGTTA+AGG | - | chr1_3:1196038-1196057 | Msa0095830:CDS | 25.0% |
| ! | ATCTGTTTCATGTATATACT+TGG | - | chr1_3:1196211-1196230 | Msa0095830:CDS | 25.0% |
| !!! | TTGGTTGAAATTTTGAAAAG+TGG | - | chr1_3:1194516-1194535 | Msa0095830:CDS | 25.0% |
| !!! | TGAAATTTTGAAAAGTGGAA+TGG | - | chr1_3:1194521-1194540 | Msa0095830:CDS | 25.0% |
| !! | TTCATTGAGTTTTTACGTAA+AGG | - | chr1_3:1194731-1194750 | Msa0095830:CDS | 25.0% |
| ! | TTTAGACTTAATTGAAAAGC+TGG | - | chr1_3:1195127-1195146 | Msa0095830:CDS | 25.0% |
| !! | ACAATACATTTCTGTTGATT+AGG | - | chr1_3:1195447-1195466 | Msa0095830:intron | 25.0% |
| ! | GTTGCATATGTTTATCTAAA+TGG | - | chr1_3:1196028-1196047 | Msa0095830:CDS | 25.0% |
| ! | TTTATCTAAATGGGAAGTTA+AGG | - | chr1_3:1196038-1196057 | Msa0095830:CDS | 25.0% |
| ! | ATCTGTTTCATGTATATACT+TGG | - | chr1_3:1196211-1196230 | Msa0095830:CDS | 25.0% |
| AGTTAATAATTCTGCTCAGA+AGG | - | chr1_3:1194626-1194645 | Msa0095830:CDS | 30.0% | |
| CGTAAAAACTCAATGAAGAT+TGG | + | chr1_3:1194728-1194747 | None:intergenic | 30.0% | |
| ATTATTGATGTTCACTCCTA+TGG | - | chr1_3:1195091-1195110 | Msa0095830:CDS | 30.0% | |
| !!! | AAAAGTTTTAACTGCACCAT+AGG | + | chr1_3:1195110-1195129 | None:intergenic | 30.0% |
| ! | ACTGTTTTCATGGTATCTAT+AGG | - | chr1_3:1195244-1195263 | Msa0095830:CDS | 30.0% |
| TTCAAATATAAATAGGGGAG+CGG | + | chr1_3:1195425-1195444 | None:intergenic | 30.0% | |
| TCAGATATGTTATGCAAATG+AGG | - | chr1_3:1195498-1195517 | Msa0095830:CDS | 30.0% | |
| CTGGTTATTCATTTGTTTGT+TGG | - | chr1_3:1195690-1195709 | Msa0095830:CDS | 30.0% | |
| TTCATGTATATACTTGGTAG+AGG | - | chr1_3:1196217-1196236 | Msa0095830:CDS | 30.0% | |
| AGCGTCTAAAGAATCTAATA+TGG | + | chr1_3:1196317-1196336 | None:intergenic | 30.0% | |
| AGTTAATAATTCTGCTCAGA+AGG | - | chr1_3:1194626-1194645 | Msa0095830:CDS | 30.0% | |
| CGTAAAAACTCAATGAAGAT+TGG | + | chr1_3:1194728-1194747 | None:intergenic | 30.0% | |
| ATTATTGATGTTCACTCCTA+TGG | - | chr1_3:1195091-1195110 | Msa0095830:CDS | 30.0% | |
| !!! | AAAAGTTTTAACTGCACCAT+AGG | + | chr1_3:1195110-1195129 | None:intergenic | 30.0% |
| ! | ACTGTTTTCATGGTATCTAT+AGG | - | chr1_3:1195244-1195263 | Msa0095830:CDS | 30.0% |
| TTCAAATATAAATAGGGGAG+CGG | + | chr1_3:1195425-1195444 | None:intergenic | 30.0% | |
| TCAGATATGTTATGCAAATG+AGG | - | chr1_3:1195498-1195517 | Msa0095830:CDS | 30.0% | |
| CTGGTTATTCATTTGTTTGT+TGG | - | chr1_3:1195690-1195709 | Msa0095830:CDS | 30.0% | |
| TTCATGTATATACTTGGTAG+AGG | - | chr1_3:1196217-1196236 | Msa0095830:CDS | 30.0% | |
| AGCGTCTAAAGAATCTAATA+TGG | + | chr1_3:1196317-1196336 | None:intergenic | 30.0% | |
| ! | AATTCTGCTCAGAAGGTTTT+TGG | - | chr1_3:1194633-1194652 | Msa0095830:CDS | 35.0% |
| AGTTACAACACGCAACAAAT+AGG | + | chr1_3:1194763-1194782 | None:intergenic | 35.0% | |
| AAACCTTCTGATGCTAAGAA+AGG | + | chr1_3:1194948-1194967 | None:intergenic | 35.0% | |
| CGCTCTTTATCAGGATTAAT+TGG | + | chr1_3:1195032-1195051 | None:intergenic | 35.0% | |
| TTGTAAACTCGCTCTTTATC+AGG | + | chr1_3:1195041-1195060 | None:intergenic | 35.0% | |
| AACGTAGAAAATACCTGTTG+AGG | + | chr1_3:1195186-1195205 | None:intergenic | 35.0% | |
| ! | CTTGATGCTTACTGTTTTCA+TGG | - | chr1_3:1195234-1195253 | Msa0095830:CDS | 35.0% |
| CAAATGAGGCTGAAAAATTC+TGG | - | chr1_3:1195512-1195531 | Msa0095830:CDS | 35.0% | |
| ! | TGCAAGAGAGATATTTTCTG+AGG | + | chr1_3:1195588-1195607 | None:intergenic | 35.0% |
| TATCTCTCTTGCACCATTTA+TGG | - | chr1_3:1195595-1195614 | Msa0095830:intron | 35.0% | |
| CTCATATCCATCTCCATAAA+TGG | + | chr1_3:1195611-1195630 | None:intergenic | 35.0% | |
| AGATGGATATGAGCAAGATT+GGG | - | chr1_3:1195618-1195637 | Msa0095830:intron | 35.0% | |
| TGGAAGAGACAACTTTAGAT+GGG | + | chr1_3:1195760-1195779 | None:intergenic | 35.0% | |
| TTGGAAGAGACAACTTTAGA+TGG | + | chr1_3:1195761-1195780 | None:intergenic | 35.0% | |
| ! | TGCAGGAGAGACAAATTTTA+AGG | - | chr1_3:1195804-1195823 | Msa0095830:CDS | 35.0% |
| ! | TCTTCTGTCTTATCGTTTTC+TGG | - | chr1_3:1195920-1195939 | Msa0095830:intron | 35.0% |
| !!! | ATCGTTTTCTGGTTTAGATC+TGG | - | chr1_3:1195931-1195950 | Msa0095830:intron | 35.0% |
| AAACCATTGCAAGTCACAAT+TGG | - | chr1_3:1196100-1196119 | Msa0095830:CDS | 35.0% | |
| AACCATTGCAAGTCACAATT+GGG | - | chr1_3:1196101-1196120 | Msa0095830:CDS | 35.0% | |
| GACATCAGTTAATAACACGA+GGG | - | chr1_3:1196123-1196142 | Msa0095830:CDS | 35.0% | |
| ATACTTGGTAGAGGATATAG+AGG | - | chr1_3:1196226-1196245 | Msa0095830:CDS | 35.0% | |
| TACTTGGTAGAGGATATAGA+GGG | - | chr1_3:1196227-1196246 | Msa0095830:CDS | 35.0% | |
| TCTACAATTTGTACCTAACC+AGG | - | chr1_3:1196270-1196289 | Msa0095830:CDS | 35.0% | |
| ! | AATTCTGCTCAGAAGGTTTT+TGG | - | chr1_3:1194633-1194652 | Msa0095830:CDS | 35.0% |
| AGTTACAACACGCAACAAAT+AGG | + | chr1_3:1194763-1194782 | None:intergenic | 35.0% | |
| AAACCTTCTGATGCTAAGAA+AGG | + | chr1_3:1194948-1194967 | None:intergenic | 35.0% | |
| CGCTCTTTATCAGGATTAAT+TGG | + | chr1_3:1195032-1195051 | None:intergenic | 35.0% | |
| TTGTAAACTCGCTCTTTATC+AGG | + | chr1_3:1195041-1195060 | None:intergenic | 35.0% | |
| AACGTAGAAAATACCTGTTG+AGG | + | chr1_3:1195186-1195205 | None:intergenic | 35.0% | |
| ! | CTTGATGCTTACTGTTTTCA+TGG | - | chr1_3:1195234-1195253 | Msa0095830:CDS | 35.0% |
| CAAATGAGGCTGAAAAATTC+TGG | - | chr1_3:1195512-1195531 | Msa0095830:CDS | 35.0% | |
| ! | TGCAAGAGAGATATTTTCTG+AGG | + | chr1_3:1195588-1195607 | None:intergenic | 35.0% |
| TATCTCTCTTGCACCATTTA+TGG | - | chr1_3:1195595-1195614 | Msa0095830:intron | 35.0% | |
| CTCATATCCATCTCCATAAA+TGG | + | chr1_3:1195611-1195630 | None:intergenic | 35.0% | |
| AGATGGATATGAGCAAGATT+GGG | - | chr1_3:1195618-1195637 | Msa0095830:intron | 35.0% | |
| TGGAAGAGACAACTTTAGAT+GGG | + | chr1_3:1195760-1195779 | None:intergenic | 35.0% | |
| TTGGAAGAGACAACTTTAGA+TGG | + | chr1_3:1195761-1195780 | None:intergenic | 35.0% | |
| ! | TGCAGGAGAGACAAATTTTA+AGG | - | chr1_3:1195804-1195823 | Msa0095830:CDS | 35.0% |
| ! | TCTTCTGTCTTATCGTTTTC+TGG | - | chr1_3:1195920-1195939 | Msa0095830:intron | 35.0% |
| !!! | ATCGTTTTCTGGTTTAGATC+TGG | - | chr1_3:1195931-1195950 | Msa0095830:intron | 35.0% |
| AAACCATTGCAAGTCACAAT+TGG | - | chr1_3:1196100-1196119 | Msa0095830:CDS | 35.0% | |
| AACCATTGCAAGTCACAATT+GGG | - | chr1_3:1196101-1196120 | Msa0095830:CDS | 35.0% | |
| GACATCAGTTAATAACACGA+GGG | - | chr1_3:1196123-1196142 | Msa0095830:CDS | 35.0% | |
| ATACTTGGTAGAGGATATAG+AGG | - | chr1_3:1196226-1196245 | Msa0095830:CDS | 35.0% | |
| TACTTGGTAGAGGATATAGA+GGG | - | chr1_3:1196227-1196246 | Msa0095830:CDS | 35.0% | |
| TCTACAATTTGTACCTAACC+AGG | - | chr1_3:1196270-1196289 | Msa0095830:CDS | 35.0% | |
| ! | ATTTTGCATCAAGGGAAAGC+AGG | + | chr1_3:1194572-1194591 | None:intergenic | 40.0% |
| ! | AGTGTCGCATTTTGCATCAA+GGG | + | chr1_3:1194580-1194599 | None:intergenic | 40.0% |
| ! | TAGTGTCGCATTTTGCATCA+AGG | + | chr1_3:1194581-1194600 | None:intergenic | 40.0% |
| TGATGCAAAATGCGACACTA+TGG | - | chr1_3:1194581-1194600 | Msa0095830:CDS | 40.0% | |
| GATGCAAAATGCGACACTAT+GGG | - | chr1_3:1194582-1194601 | Msa0095830:CDS | 40.0% | |
| !! | ATGGAGTGTTGTGAGCAATA+GGG | + | chr1_3:1194676-1194695 | None:intergenic | 40.0% |
| TATTGCTCACAACACTCCAT+GGG | - | chr1_3:1194676-1194695 | Msa0095830:CDS | 40.0% | |
| ! | GAGCAAGTTCTAACATCAAC+TGG | + | chr1_3:1194908-1194927 | None:intergenic | 40.0% |
| GACTCGTTCTCAATTGCATT+TGG | + | chr1_3:1194978-1194997 | None:intergenic | 40.0% | |
| !!! | AGTCTTTTATTGACTCCCTC+AGG | - | chr1_3:1195005-1195024 | Msa0095830:CDS | 40.0% |
| TCAGGATTAATTGGACCTGA+GGG | + | chr1_3:1195023-1195042 | None:intergenic | 40.0% | |
| ATCAGGATTAATTGGACCTG+AGG | + | chr1_3:1195024-1195043 | None:intergenic | 40.0% | |
| AAAGAGCGAGTTTACAATGC+TGG | - | chr1_3:1195044-1195063 | Msa0095830:CDS | 40.0% | |
| TGAGGCTTTCGAGATTAAAG+GGG | + | chr1_3:1195163-1195182 | None:intergenic | 40.0% | |
| GTGAGGCTTTCGAGATTAAA+GGG | + | chr1_3:1195164-1195183 | None:intergenic | 40.0% | |
| AGAAAATACCTGTTGAGGTG+AGG | + | chr1_3:1195181-1195200 | None:intergenic | 40.0% | |
| CATGGTATCTATAGGTTGTG+TGG | - | chr1_3:1195252-1195271 | Msa0095830:CDS | 40.0% | |
| TACAATCCACCCCTTTCTTT+CGG | - | chr1_3:1195288-1195307 | Msa0095830:CDS | 40.0% | |
| AAGATGAACCCGAAAGAAAG+GGG | + | chr1_3:1195300-1195319 | None:intergenic | 40.0% | |
| GAAGATGAACCCGAAAGAAA+GGG | + | chr1_3:1195301-1195320 | None:intergenic | 40.0% | |
| TTGAAGATTGTGGAAGTCCT+CGG | - | chr1_3:1195337-1195356 | Msa0095830:CDS | 40.0% | |
| GGTAGGGTGCATATTCTTAT+TGG | - | chr1_3:1195368-1195387 | Msa0095830:intron | 40.0% | |
| AAATAGGGGAGCGGATAAAA+TGG | + | chr1_3:1195416-1195435 | None:intergenic | 40.0% | |
| TCTTGCACCATTTATGGAGA+TGG | - | chr1_3:1195601-1195620 | Msa0095830:intron | 40.0% | |
| GAGATGGATATGAGCAAGAT+TGG | - | chr1_3:1195617-1195636 | Msa0095830:intron | 40.0% | |
| TTTCGTTGGGTGAAAGATCA+TGG | - | chr1_3:1195657-1195676 | Msa0095830:CDS | 40.0% | |
| ACAAATGAATAACCAGCAGC+CGG | + | chr1_3:1195686-1195705 | None:intergenic | 40.0% | |
| AGAGACAACTTTAGATGGGT+CGG | + | chr1_3:1195756-1195775 | None:intergenic | 40.0% | |
| CTGGAGATAAAGTTCAGCAT+AGG | + | chr1_3:1195867-1195886 | None:intergenic | 40.0% | |
| CTATGCTGAACTTTATCTCC+AGG | - | chr1_3:1195865-1195884 | Msa0095830:intron | 40.0% | |
| CGATAAGACAGAAGAATTGC+TGG | + | chr1_3:1195915-1195934 | None:intergenic | 40.0% | |
| !!! | GTTTTCTGGTTTAGATCTGG+AGG | - | chr1_3:1195934-1195953 | Msa0095830:intron | 40.0% |
| GGACATCAGTTAATAACACG+AGG | - | chr1_3:1196122-1196141 | Msa0095830:CDS | 40.0% | |
| !! | ACGCTCTTGCTATCTTTTTG+AGG | - | chr1_3:1196168-1196187 | Msa0095830:intron | 40.0% |
| TACATGAAACAGATACAGCC+AGG | + | chr1_3:1196205-1196224 | None:intergenic | 40.0% | |
| !! | AGGATATAGAGGGCTTTTTC+AGG | - | chr1_3:1196237-1196256 | Msa0095830:CDS | 40.0% |
| ! | ATTTTGCATCAAGGGAAAGC+AGG | + | chr1_3:1194572-1194591 | None:intergenic | 40.0% |
| ! | AGTGTCGCATTTTGCATCAA+GGG | + | chr1_3:1194580-1194599 | None:intergenic | 40.0% |
| ! | TAGTGTCGCATTTTGCATCA+AGG | + | chr1_3:1194581-1194600 | None:intergenic | 40.0% |
| TGATGCAAAATGCGACACTA+TGG | - | chr1_3:1194581-1194600 | Msa0095830:CDS | 40.0% | |
| GATGCAAAATGCGACACTAT+GGG | - | chr1_3:1194582-1194601 | Msa0095830:CDS | 40.0% | |
| !! | ATGGAGTGTTGTGAGCAATA+GGG | + | chr1_3:1194676-1194695 | None:intergenic | 40.0% |
| TATTGCTCACAACACTCCAT+GGG | - | chr1_3:1194676-1194695 | Msa0095830:CDS | 40.0% | |
| ! | GAGCAAGTTCTAACATCAAC+TGG | + | chr1_3:1194908-1194927 | None:intergenic | 40.0% |
| GACTCGTTCTCAATTGCATT+TGG | + | chr1_3:1194978-1194997 | None:intergenic | 40.0% | |
| !!! | AGTCTTTTATTGACTCCCTC+AGG | - | chr1_3:1195005-1195024 | Msa0095830:CDS | 40.0% |
| TCAGGATTAATTGGACCTGA+GGG | + | chr1_3:1195023-1195042 | None:intergenic | 40.0% | |
| ATCAGGATTAATTGGACCTG+AGG | + | chr1_3:1195024-1195043 | None:intergenic | 40.0% | |
| AAAGAGCGAGTTTACAATGC+TGG | - | chr1_3:1195044-1195063 | Msa0095830:CDS | 40.0% | |
| TGAGGCTTTCGAGATTAAAG+GGG | + | chr1_3:1195163-1195182 | None:intergenic | 40.0% | |
| GTGAGGCTTTCGAGATTAAA+GGG | + | chr1_3:1195164-1195183 | None:intergenic | 40.0% | |
| AGAAAATACCTGTTGAGGTG+AGG | + | chr1_3:1195181-1195200 | None:intergenic | 40.0% | |
| CATGGTATCTATAGGTTGTG+TGG | - | chr1_3:1195252-1195271 | Msa0095830:CDS | 40.0% | |
| TACAATCCACCCCTTTCTTT+CGG | - | chr1_3:1195288-1195307 | Msa0095830:CDS | 40.0% | |
| AAGATGAACCCGAAAGAAAG+GGG | + | chr1_3:1195300-1195319 | None:intergenic | 40.0% | |
| GAAGATGAACCCGAAAGAAA+GGG | + | chr1_3:1195301-1195320 | None:intergenic | 40.0% | |
| TTGAAGATTGTGGAAGTCCT+CGG | - | chr1_3:1195337-1195356 | Msa0095830:CDS | 40.0% | |
| GGTAGGGTGCATATTCTTAT+TGG | - | chr1_3:1195368-1195387 | Msa0095830:intron | 40.0% | |
| AAATAGGGGAGCGGATAAAA+TGG | + | chr1_3:1195416-1195435 | None:intergenic | 40.0% | |
| TCTTGCACCATTTATGGAGA+TGG | - | chr1_3:1195601-1195620 | Msa0095830:intron | 40.0% | |
| GAGATGGATATGAGCAAGAT+TGG | - | chr1_3:1195617-1195636 | Msa0095830:intron | 40.0% | |
| TTTCGTTGGGTGAAAGATCA+TGG | - | chr1_3:1195657-1195676 | Msa0095830:CDS | 40.0% | |
| ACAAATGAATAACCAGCAGC+CGG | + | chr1_3:1195686-1195705 | None:intergenic | 40.0% | |
| AGAGACAACTTTAGATGGGT+CGG | + | chr1_3:1195756-1195775 | None:intergenic | 40.0% | |
| CTGGAGATAAAGTTCAGCAT+AGG | + | chr1_3:1195867-1195886 | None:intergenic | 40.0% | |
| CTATGCTGAACTTTATCTCC+AGG | - | chr1_3:1195865-1195884 | Msa0095830:intron | 40.0% | |
| CGATAAGACAGAAGAATTGC+TGG | + | chr1_3:1195915-1195934 | None:intergenic | 40.0% | |
| !!! | GTTTTCTGGTTTAGATCTGG+AGG | - | chr1_3:1195934-1195953 | Msa0095830:intron | 40.0% |
| GGACATCAGTTAATAACACG+AGG | - | chr1_3:1196122-1196141 | Msa0095830:CDS | 40.0% | |
| !! | ACGCTCTTGCTATCTTTTTG+AGG | - | chr1_3:1196168-1196187 | Msa0095830:intron | 40.0% |
| TACATGAAACAGATACAGCC+AGG | + | chr1_3:1196205-1196224 | None:intergenic | 40.0% | |
| !! | AGGATATAGAGGGCTTTTTC+AGG | - | chr1_3:1196237-1196256 | Msa0095830:CDS | 40.0% |
| TGGAATGGTAACCAGTGCTT+TGG | - | chr1_3:1194536-1194555 | Msa0095830:CDS | 45.0% | |
| GGAATGGTAACCAGTGCTTT+GGG | - | chr1_3:1194537-1194556 | Msa0095830:CDS | 45.0% | |
| !!! | AAGGTTTTTGGTGAAGCCAC+TGG | - | chr1_3:1194645-1194664 | Msa0095830:CDS | 45.0% |
| GAGCAATAGGGAAAAACCAG+TGG | + | chr1_3:1194664-1194683 | None:intergenic | 45.0% | |
| !! | CATGGAGTGTTGTGAGCAAT+AGG | + | chr1_3:1194677-1194696 | None:intergenic | 45.0% |
| CTATTGCTCACAACACTCCA+TGG | - | chr1_3:1194675-1194694 | Msa0095830:CDS | 45.0% | |
| TTGTTGCGTGTTGTAACTGC+TGG | - | chr1_3:1194765-1194784 | Msa0095830:CDS | 45.0% | |
| TTCGATCTTCTCTGTGAGTC+TGG | - | chr1_3:1194849-1194868 | Msa0095830:CDS | 45.0% | |
| ! | TGAGTCTGGCTTACTTTGTG+TGG | - | chr1_3:1194863-1194882 | Msa0095830:CDS | 45.0% |
| CCTTCTGATGCTAAGAAAGG+TGG | + | chr1_3:1194945-1194964 | None:intergenic | 45.0% | |
| CCACCTTTCTTAGCATCAGA+AGG | - | chr1_3:1194942-1194961 | Msa0095830:CDS | 45.0% | |
| GGTGAGGCTTTCGAGATTAA+AGG | + | chr1_3:1195165-1195184 | None:intergenic | 45.0% | |
| ! | AGGTTGTGTGGAACTTTTGC+TGG | - | chr1_3:1195264-1195283 | Msa0095830:CDS | 45.0% |
| ACAATCCACCCCTTTCTTTC+GGG | - | chr1_3:1195289-1195308 | Msa0095830:CDS | 45.0% | |
| GGAAGATGAACCCGAAAGAA+AGG | + | chr1_3:1195302-1195321 | None:intergenic | 45.0% | |
| CTTCAATGCACGAGAGAGTA+AGG | + | chr1_3:1195323-1195342 | None:intergenic | 45.0% | |
| CTCTCGTGCATTGAAGATTG+TGG | - | chr1_3:1195327-1195346 | Msa0095830:CDS | 45.0% | |
| TTCACCCAACGAAACCTGAA+TGG | + | chr1_3:1195651-1195670 | None:intergenic | 45.0% | |
| ! | GATGGGTCGGTATCTTTTGA+TGG | + | chr1_3:1195743-1195762 | None:intergenic | 45.0% |
| TGCTGAACTTTATCTCCAGG+AGG | - | chr1_3:1195868-1195887 | Msa0095830:intron | 45.0% | |
| GAACTTTATCTCCAGGAGGA+TGG | - | chr1_3:1195872-1195891 | Msa0095830:intron | 45.0% | |
| ! | TCTGGTTTAGATCTGGAGGA+AGG | - | chr1_3:1195938-1195957 | Msa0095830:intron | 45.0% |
| GTTTAGATCTGGAGGAAGGA+AGG | - | chr1_3:1195942-1195961 | Msa0095830:intron | 45.0% | |
| !! | GTTTGCTGTGAATGACTGCA+AGG | + | chr1_3:1195976-1195995 | None:intergenic | 45.0% |
| AGCAAACCAAATGCTCTTGC+TGG | - | chr1_3:1195989-1196008 | Msa0095830:CDS | 45.0% | |
| !! | AACAGTCCAGCAAGAGCATT+TGG | + | chr1_3:1195998-1196017 | None:intergenic | 45.0% |
| AATGGGAAGTTAAGGCACAC+TGG | - | chr1_3:1196046-1196065 | Msa0095830:CDS | 45.0% | |
| ATGGGAAGTTAAGGCACACT+GGG | - | chr1_3:1196047-1196066 | Msa0095830:CDS | 45.0% | |
| TTAAGGCACACTGGGAAGTT+AGG | - | chr1_3:1196055-1196074 | Msa0095830:CDS | 45.0% | |
| AATGGTTTACCAGGTGGAGA+GGG | + | chr1_3:1196088-1196107 | None:intergenic | 45.0% | |
| ACTTGCAATGGTTTACCAGG+TGG | + | chr1_3:1196094-1196113 | None:intergenic | 45.0% | |
| ! | GTGACTTGCAATGGTTTACC+AGG | + | chr1_3:1196097-1196116 | None:intergenic | 45.0% |
| ! | GTCCCAATTGTGACTTGCAA+TGG | + | chr1_3:1196106-1196125 | None:intergenic | 45.0% |
| !! | TTTGAGGAAGTGCTTACACC+TGG | - | chr1_3:1196184-1196203 | Msa0095830:intron | 45.0% |
| TGGAATGGTAACCAGTGCTT+TGG | - | chr1_3:1194536-1194555 | Msa0095830:CDS | 45.0% | |
| GGAATGGTAACCAGTGCTTT+GGG | - | chr1_3:1194537-1194556 | Msa0095830:CDS | 45.0% | |
| !!! | AAGGTTTTTGGTGAAGCCAC+TGG | - | chr1_3:1194645-1194664 | Msa0095830:CDS | 45.0% |
| GAGCAATAGGGAAAAACCAG+TGG | + | chr1_3:1194664-1194683 | None:intergenic | 45.0% | |
| !! | CATGGAGTGTTGTGAGCAAT+AGG | + | chr1_3:1194677-1194696 | None:intergenic | 45.0% |
| CTATTGCTCACAACACTCCA+TGG | - | chr1_3:1194675-1194694 | Msa0095830:CDS | 45.0% | |
| TTGTTGCGTGTTGTAACTGC+TGG | - | chr1_3:1194765-1194784 | Msa0095830:CDS | 45.0% | |
| TTCGATCTTCTCTGTGAGTC+TGG | - | chr1_3:1194849-1194868 | Msa0095830:CDS | 45.0% | |
| ! | TGAGTCTGGCTTACTTTGTG+TGG | - | chr1_3:1194863-1194882 | Msa0095830:CDS | 45.0% |
| CCTTCTGATGCTAAGAAAGG+TGG | + | chr1_3:1194945-1194964 | None:intergenic | 45.0% | |
| CCACCTTTCTTAGCATCAGA+AGG | - | chr1_3:1194942-1194961 | Msa0095830:CDS | 45.0% | |
| GGTGAGGCTTTCGAGATTAA+AGG | + | chr1_3:1195165-1195184 | None:intergenic | 45.0% | |
| ! | AGGTTGTGTGGAACTTTTGC+TGG | - | chr1_3:1195264-1195283 | Msa0095830:CDS | 45.0% |
| ACAATCCACCCCTTTCTTTC+GGG | - | chr1_3:1195289-1195308 | Msa0095830:CDS | 45.0% | |
| GGAAGATGAACCCGAAAGAA+AGG | + | chr1_3:1195302-1195321 | None:intergenic | 45.0% | |
| CTTCAATGCACGAGAGAGTA+AGG | + | chr1_3:1195323-1195342 | None:intergenic | 45.0% | |
| CTCTCGTGCATTGAAGATTG+TGG | - | chr1_3:1195327-1195346 | Msa0095830:CDS | 45.0% | |
| TTCACCCAACGAAACCTGAA+TGG | + | chr1_3:1195651-1195670 | None:intergenic | 45.0% | |
| ! | GATGGGTCGGTATCTTTTGA+TGG | + | chr1_3:1195743-1195762 | None:intergenic | 45.0% |
| TGCTGAACTTTATCTCCAGG+AGG | - | chr1_3:1195868-1195887 | Msa0095830:intron | 45.0% | |
| GAACTTTATCTCCAGGAGGA+TGG | - | chr1_3:1195872-1195891 | Msa0095830:intron | 45.0% | |
| ! | TCTGGTTTAGATCTGGAGGA+AGG | - | chr1_3:1195938-1195957 | Msa0095830:intron | 45.0% |
| GTTTAGATCTGGAGGAAGGA+AGG | - | chr1_3:1195942-1195961 | Msa0095830:intron | 45.0% | |
| !! | GTTTGCTGTGAATGACTGCA+AGG | + | chr1_3:1195976-1195995 | None:intergenic | 45.0% |
| AGCAAACCAAATGCTCTTGC+TGG | - | chr1_3:1195989-1196008 | Msa0095830:CDS | 45.0% | |
| !! | AACAGTCCAGCAAGAGCATT+TGG | + | chr1_3:1195998-1196017 | None:intergenic | 45.0% |
| AATGGGAAGTTAAGGCACAC+TGG | - | chr1_3:1196046-1196065 | Msa0095830:CDS | 45.0% | |
| ATGGGAAGTTAAGGCACACT+GGG | - | chr1_3:1196047-1196066 | Msa0095830:CDS | 45.0% | |
| TTAAGGCACACTGGGAAGTT+AGG | - | chr1_3:1196055-1196074 | Msa0095830:CDS | 45.0% | |
| AATGGTTTACCAGGTGGAGA+GGG | + | chr1_3:1196088-1196107 | None:intergenic | 45.0% | |
| ACTTGCAATGGTTTACCAGG+TGG | + | chr1_3:1196094-1196113 | None:intergenic | 45.0% | |
| ! | GTGACTTGCAATGGTTTACC+AGG | + | chr1_3:1196097-1196116 | None:intergenic | 45.0% |
| ! | GTCCCAATTGTGACTTGCAA+TGG | + | chr1_3:1196106-1196125 | None:intergenic | 45.0% |
| !! | TTTGAGGAAGTGCTTACACC+TGG | - | chr1_3:1196184-1196203 | Msa0095830:intron | 45.0% |
| GTACTGAGATCCCAAAGCAC+TGG | + | chr1_3:1194550-1194569 | None:intergenic | 50.0% | |
| CTCCATGGGTTCCAAAGTGA+TGG | - | chr1_3:1194690-1194709 | Msa0095830:CDS | 50.0% | |
| !! | CACCATCACTTTGGAACCCA+TGG | + | chr1_3:1194695-1194714 | None:intergenic | 50.0% |
| CATGGGTTCCAAAGTGATGG+TGG | - | chr1_3:1194693-1194712 | Msa0095830:CDS | 50.0% | |
| CCAAGTCTCCACCATCACTT+TGG | + | chr1_3:1194704-1194723 | None:intergenic | 50.0% | |
| !! | CCAAAGTGATGGTGGAGACT+TGG | - | chr1_3:1194701-1194720 | Msa0095830:CDS | 50.0% |
| !! | ATTGAAAAGCTGGCTCGTGC+TGG | - | chr1_3:1195137-1195156 | Msa0095830:CDS | 50.0% |
| ATGAACCCGAAAGAAAGGGG+TGG | + | chr1_3:1195297-1195316 | None:intergenic | 50.0% | |
| TGGAAGTCCTCGGTTCTTAC+AGG | - | chr1_3:1195347-1195366 | Msa0095830:intron | 50.0% | |
| AGTCCTCGGTTCTTACAGGT+AGG | - | chr1_3:1195351-1195370 | Msa0095830:intron | 50.0% | |
| GTCCTCGGTTCTTACAGGTA+GGG | - | chr1_3:1195352-1195371 | Msa0095830:intron | 50.0% | |
| ! | TGCTGCCATTCAGGTTTCGT+TGG | - | chr1_3:1195643-1195662 | Msa0095830:CDS | 50.0% |
| ! | GCTGCCATTCAGGTTTCGTT+GGG | - | chr1_3:1195644-1195663 | Msa0095830:CDS | 50.0% |
| AATGAATAACCAGCAGCCGG+AGG | + | chr1_3:1195683-1195702 | None:intergenic | 50.0% | |
| GTCTCTCCTGCAGTCCATTT+GGG | + | chr1_3:1195796-1195815 | None:intergenic | 50.0% | |
| TGTCTCTCCTGCAGTCCATT+TGG | + | chr1_3:1195797-1195816 | None:intergenic | 50.0% | |
| GAGTAAGAATGCCATCCTCC+TGG | + | chr1_3:1195886-1195905 | None:intergenic | 50.0% | |
| TAGATCTGGAGGAAGGAAGG+TGG | - | chr1_3:1195945-1195964 | Msa0095830:intron | 50.0% | |
| CAATGGTTTACCAGGTGGAG+AGG | + | chr1_3:1196089-1196108 | None:intergenic | 50.0% | |
| ! | CGAGGGTTAGTGACTTAGCA+TGG | - | chr1_3:1196140-1196159 | Msa0095830:CDS | 50.0% |
| TTTGTACCTAACCAGGCCTG+TGG | - | chr1_3:1196277-1196296 | Msa0095830:CDS | 50.0% | |
| GTACTGAGATCCCAAAGCAC+TGG | + | chr1_3:1194550-1194569 | None:intergenic | 50.0% | |
| CTCCATGGGTTCCAAAGTGA+TGG | - | chr1_3:1194690-1194709 | Msa0095830:CDS | 50.0% | |
| !! | CACCATCACTTTGGAACCCA+TGG | + | chr1_3:1194695-1194714 | None:intergenic | 50.0% |
| CATGGGTTCCAAAGTGATGG+TGG | - | chr1_3:1194693-1194712 | Msa0095830:CDS | 50.0% | |
| CCAAGTCTCCACCATCACTT+TGG | + | chr1_3:1194704-1194723 | None:intergenic | 50.0% | |
| !! | CCAAAGTGATGGTGGAGACT+TGG | - | chr1_3:1194701-1194720 | Msa0095830:CDS | 50.0% |
| !! | ATTGAAAAGCTGGCTCGTGC+TGG | - | chr1_3:1195137-1195156 | Msa0095830:CDS | 50.0% |
| ATGAACCCGAAAGAAAGGGG+TGG | + | chr1_3:1195297-1195316 | None:intergenic | 50.0% | |
| TGGAAGTCCTCGGTTCTTAC+AGG | - | chr1_3:1195347-1195366 | Msa0095830:intron | 50.0% | |
| AGTCCTCGGTTCTTACAGGT+AGG | - | chr1_3:1195351-1195370 | Msa0095830:intron | 50.0% | |
| GTCCTCGGTTCTTACAGGTA+GGG | - | chr1_3:1195352-1195371 | Msa0095830:intron | 50.0% | |
| ! | TGCTGCCATTCAGGTTTCGT+TGG | - | chr1_3:1195643-1195662 | Msa0095830:CDS | 50.0% |
| ! | GCTGCCATTCAGGTTTCGTT+GGG | - | chr1_3:1195644-1195663 | Msa0095830:CDS | 50.0% |
| AATGAATAACCAGCAGCCGG+AGG | + | chr1_3:1195683-1195702 | None:intergenic | 50.0% | |
| GTCTCTCCTGCAGTCCATTT+GGG | + | chr1_3:1195796-1195815 | None:intergenic | 50.0% | |
| TGTCTCTCCTGCAGTCCATT+TGG | + | chr1_3:1195797-1195816 | None:intergenic | 50.0% | |
| GAGTAAGAATGCCATCCTCC+TGG | + | chr1_3:1195886-1195905 | None:intergenic | 50.0% | |
| TAGATCTGGAGGAAGGAAGG+TGG | - | chr1_3:1195945-1195964 | Msa0095830:intron | 50.0% | |
| CAATGGTTTACCAGGTGGAG+AGG | + | chr1_3:1196089-1196108 | None:intergenic | 50.0% | |
| ! | CGAGGGTTAGTGACTTAGCA+TGG | - | chr1_3:1196140-1196159 | Msa0095830:CDS | 50.0% |
| TTTGTACCTAACCAGGCCTG+TGG | - | chr1_3:1196277-1196296 | Msa0095830:CDS | 50.0% | |
| TCCTGAGGAGTTAGGCGTGT+TGG | - | chr1_3:1194497-1194516 | Msa0095830:CDS | 55.0% | |
| ACCAACACGCCTAACTCCTC+AGG | + | chr1_3:1194501-1194520 | None:intergenic | 55.0% | |
| !! | GGAGCACTGTGGCGTATCTT+GGG | - | chr1_3:1194603-1194622 | Msa0095830:CDS | 55.0% |
| CTCGAAAGCCTCACCTCAAC+AGG | - | chr1_3:1195170-1195189 | Msa0095830:CDS | 55.0% | |
| CACCCTACCTGTAAGAACCG+AGG | + | chr1_3:1195357-1195376 | None:intergenic | 55.0% | |
| GATTGGGCATGCTGCCATTC+AGG | - | chr1_3:1195634-1195653 | Msa0095830:intron | 55.0% | |
| GGGTGAAAGATCATGGCCTC+CGG | - | chr1_3:1195664-1195683 | Msa0095830:CDS | 55.0% | |
| !! | GTCTCTTCCAAGAAGCGCTC+TGG | - | chr1_3:1195770-1195789 | Msa0095830:CDS | 55.0% |
| ! | ATTTGGGCCAGAGCGCTTCT+TGG | + | chr1_3:1195780-1195799 | None:intergenic | 55.0% |
| !! | AAGAAGCGCTCTGGCCCAAA+TGG | - | chr1_3:1195779-1195798 | Msa0095830:CDS | 55.0% |
| GGATATTCACCCTCTCCACC+TGG | - | chr1_3:1196076-1196095 | Msa0095830:CDS | 55.0% | |
| TCCTGAGGAGTTAGGCGTGT+TGG | - | chr1_3:1194497-1194516 | Msa0095830:CDS | 55.0% | |
| ACCAACACGCCTAACTCCTC+AGG | + | chr1_3:1194501-1194520 | None:intergenic | 55.0% | |
| !! | GGAGCACTGTGGCGTATCTT+GGG | - | chr1_3:1194603-1194622 | Msa0095830:CDS | 55.0% |
| CTCGAAAGCCTCACCTCAAC+AGG | - | chr1_3:1195170-1195189 | Msa0095830:CDS | 55.0% | |
| CACCCTACCTGTAAGAACCG+AGG | + | chr1_3:1195357-1195376 | None:intergenic | 55.0% | |
| GATTGGGCATGCTGCCATTC+AGG | - | chr1_3:1195634-1195653 | Msa0095830:intron | 55.0% | |
| GGGTGAAAGATCATGGCCTC+CGG | - | chr1_3:1195664-1195683 | Msa0095830:CDS | 55.0% | |
| !! | GTCTCTTCCAAGAAGCGCTC+TGG | - | chr1_3:1195770-1195789 | Msa0095830:CDS | 55.0% |
| ! | ATTTGGGCCAGAGCGCTTCT+TGG | + | chr1_3:1195780-1195799 | None:intergenic | 55.0% |
| !! | AAGAAGCGCTCTGGCCCAAA+TGG | - | chr1_3:1195779-1195798 | Msa0095830:CDS | 55.0% |
| GGATATTCACCCTCTCCACC+TGG | - | chr1_3:1196076-1196095 | Msa0095830:CDS | 55.0% | |
| !! | GCGACACTATGGGAGCACTG+TGG | - | chr1_3:1194592-1194611 | Msa0095830:CDS | 60.0% |
| !! | GGGAGCACTGTGGCGTATCT+TGG | - | chr1_3:1194602-1194621 | Msa0095830:CDS | 60.0% |
| !! | CTCTGGCCCAAATGGACTGC+AGG | - | chr1_3:1195787-1195806 | Msa0095830:CDS | 60.0% |
| GTACCTAACCAGGCCTGTGG+TGG | - | chr1_3:1196280-1196299 | Msa0095830:CDS | 60.0% | |
| TACTACCACCACCACAGGCC+TGG | + | chr1_3:1196291-1196310 | None:intergenic | 60.0% | |
| !! | GGCCTGTGGTGGTGGTAGTA+TGG | - | chr1_3:1196291-1196310 | Msa0095830:CDS | 60.0% |
| GGCCATACTACCACCACCAC+AGG | + | chr1_3:1196296-1196315 | None:intergenic | 60.0% | |
| !! | GCGACACTATGGGAGCACTG+TGG | - | chr1_3:1194592-1194611 | Msa0095830:CDS | 60.0% |
| !! | GGGAGCACTGTGGCGTATCT+TGG | - | chr1_3:1194602-1194621 | Msa0095830:CDS | 60.0% |
| !! | CTCTGGCCCAAATGGACTGC+AGG | - | chr1_3:1195787-1195806 | Msa0095830:CDS | 60.0% |
| GTACCTAACCAGGCCTGTGG+TGG | - | chr1_3:1196280-1196299 | Msa0095830:CDS | 60.0% | |
| TACTACCACCACCACAGGCC+TGG | + | chr1_3:1196291-1196310 | None:intergenic | 60.0% | |
| !! | GGCCTGTGGTGGTGGTAGTA+TGG | - | chr1_3:1196291-1196310 | Msa0095830:CDS | 60.0% |
| GGCCATACTACCACCACCAC+AGG | + | chr1_3:1196296-1196315 | None:intergenic | 60.0% | |
| AGATCATGGCCTCCGGCTGC+TGG | - | chr1_3:1195671-1195690 | Msa0095830:CDS | 65.0% | |
| CCACCACCACAGGCCTGGTT+AGG | + | chr1_3:1196286-1196305 | None:intergenic | 65.0% | |
| CCTAACCAGGCCTGTGGTGG+TGG | - | chr1_3:1196283-1196302 | Msa0095830:CDS | 65.0% | |
| AGATCATGGCCTCCGGCTGC+TGG | - | chr1_3:1195671-1195690 | Msa0095830:CDS | 65.0% | |
| CCACCACCACAGGCCTGGTT+AGG | + | chr1_3:1196286-1196305 | None:intergenic | 65.0% | |
| CCTAACCAGGCCTGTGGTGG+TGG | - | chr1_3:1196283-1196302 | Msa0095830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 1194492 | 1196342 | 1194492 | ID=Msa0095830;Name=Msa0095830 |
| chr1_3 | mRNA | 1194492 | 1196342 | 1194492 | ID=Msa0095830-mRNA-1;Parent=Msa0095830;Name=Msa0095830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.4|0.16|1|0.4|0.33|6|0|526 |
| chr1_3 | exon | 1196208 | 1196342 | 1196208 | ID=Msa0095830-mRNA-1:exon:216;Parent=Msa0095830-mRNA-1 |
| chr1_3 | exon | 1195953 | 1196186 | 1195953 | ID=Msa0095830-mRNA-1:exon:215;Parent=Msa0095830-mRNA-1 |
| chr1_3 | exon | 1195927 | 1195933 | 1195927 | ID=Msa0095830-mRNA-1:exon:214;Parent=Msa0095830-mRNA-1 |
| chr1_3 | exon | 1195643 | 1195870 | 1195643 | ID=Msa0095830-mRNA-1:exon:213;Parent=Msa0095830-mRNA-1 |
| chr1_3 | exon | 1195466 | 1195568 | 1195466 | ID=Msa0095830-mRNA-1:exon:212;Parent=Msa0095830-mRNA-1 |
| chr1_3 | exon | 1194492 | 1195365 | 1194492 | ID=Msa0095830-mRNA-1:exon:211;Parent=Msa0095830-mRNA-1 |
| chr1_3 | CDS | 1196208 | 1196342 | 1196208 | ID=Msa0095830-mRNA-1:cds;Parent=Msa0095830-mRNA-1 |
| chr1_3 | CDS | 1195953 | 1196186 | 1195953 | ID=Msa0095830-mRNA-1:cds;Parent=Msa0095830-mRNA-1 |
| chr1_3 | CDS | 1195927 | 1195933 | 1195927 | ID=Msa0095830-mRNA-1:cds;Parent=Msa0095830-mRNA-1 |
| chr1_3 | CDS | 1195643 | 1195870 | 1195643 | ID=Msa0095830-mRNA-1:cds;Parent=Msa0095830-mRNA-1 |
| chr1_3 | CDS | 1195466 | 1195568 | 1195466 | ID=Msa0095830-mRNA-1:cds;Parent=Msa0095830-mRNA-1 |
| chr1_3 | CDS | 1194492 | 1195365 | 1194492 | ID=Msa0095830-mRNA-1:cds;Parent=Msa0095830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
