Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095930 | XP_003611217.1 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 3.90e-163 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095930 | sp|Q8GW78|CLPT2_ARATH | 55.238 | 210 | 82 | 4 | 28 | 233 | 40 | 241 | 4.13e-68 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095930 | G7KG47 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 1.86e-163 | 460 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095930 | Msa0253510 | 0.821418 | 4.081085e-53 | -8.615850e-47 |
| Msa0095930 | Msa1412380 | 0.997644 | 2.413877e-246 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095930 | MtrunA17_Chr5g0398561 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 3.59e-167 | 460 |
| Msa0095930 | MtrunA17_Chr6g0475931 | 45.989 | 187 | 96 | 3 | 38 | 221 | 40 | 224 | 7.13e-49 | 160 |
| Msa0095930 | MtrunA17_Chr3g0131711 | 27.326 | 172 | 112 | 5 | 7 | 176 | 23 | 183 | 6.64e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095930 | AT4G12060.1 | 55.238 | 210 | 82 | 4 | 28 | 233 | 40 | 241 | 4.20e-69 | 212 |
| Msa0095930 | AT4G25370.1 | 53.571 | 168 | 77 | 1 | 62 | 229 | 63 | 229 | 2.55e-60 | 190 |
Find 71 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCTAGGAACCAAAATT+AGG | 0.149394 | 1_3:-1363813 | Msa0095930:CDS |
| GCAATGTTGAACCCTAATTT+TGG | 0.225097 | 1_3:+1363801 | None:intergenic |
| TAACAAACCCTAACAATTCT+TGG | 0.295248 | 1_3:-1363831 | Msa0095930:CDS |
| GTTCCTAGCCAAGAATTGTT+AGG | 0.304035 | 1_3:+1363823 | None:intergenic |
| CACATATGATTCTTGGCATT+TGG | 0.318600 | 1_3:-1360877 | Msa0095930:CDS |
| TTGGCTAGGAACCAAAATTA+GGG | 0.344080 | 1_3:-1363812 | Msa0095930:CDS |
| GTTGATCGAAAATTAAAATC+TGG | 0.351809 | 1_3:-1362228 | Msa0095930:intron |
| GCGACACTTTCGGAAGGAAT+TGG | 0.358696 | 1_3:+1363955 | None:intergenic |
| ATACTCACTTGGGAATTTCC+TGG | 0.365990 | 1_3:+1363307 | None:intergenic |
| ACCACAGCACATATGATTCT+TGG | 0.387411 | 1_3:-1360884 | Msa0095930:CDS |
| AGACGAAAATGCGACACTTT+CGG | 0.390425 | 1_3:+1363945 | None:intergenic |
| AATTTCTAAACATGTTGTTA+AGG | 0.398372 | 1_3:-1360774 | Msa0095930:CDS |
| TCAGTCATTGGTGGACGCTC+GGG | 0.405748 | 1_3:+1362279 | None:intergenic |
| AACAACATGTTTAGAAATTG+AGG | 0.411712 | 1_3:+1360778 | None:intergenic |
| TGCTCAGAAGGCCCTTGATT+GGG | 0.418536 | 1_3:-1362253 | Msa0095930:CDS |
| ATCAGTCATTGGTGGACGCT+CGG | 0.419261 | 1_3:+1362278 | None:intergenic |
| CACTTGGGAATTTCCTGGCC+TGG | 0.426904 | 1_3:+1363312 | None:intergenic |
| ATGCTCAGAAGGCCCTTGAT+TGG | 0.427901 | 1_3:-1362254 | Msa0095930:CDS |
| AAACTCAAGTTTACTACTAC+TGG | 0.429106 | 1_3:-1363152 | Msa0095930:CDS |
| TTCGATCAACAGCCCAATCA+AGG | 0.438437 | 1_3:+1362241 | None:intergenic |
| CAAAGGACGGCGGTGGAAAA+CGG | 0.443160 | 1_3:+1363753 | None:intergenic |
| TGTACAATAGATAGATCAAC+AGG | 0.451645 | 1_3:-1360595 | Msa0095930:three_prime_UTR |
| TTCCTAGCCAAGAATTGTTA+GGG | 0.461149 | 1_3:+1363824 | None:intergenic |
| TTCTGAGCATCATCAGTCAT+TGG | 0.477835 | 1_3:+1362267 | None:intergenic |
| TTCGTCATTAATGCCAAGGT+TGG | 0.479778 | 1_3:+1360820 | None:intergenic |
| GATGAAATTGTGAAAGTACT+TGG | 0.480263 | 1_3:-1362327 | Msa0095930:CDS |
| TGGTCTGATGTGGATTCCCC+AGG | 0.492555 | 1_3:-1360857 | Msa0095930:CDS |
| GAACGCAGTGACAAGGTTGA+AGG | 0.494563 | 1_3:+1363889 | None:intergenic |
| TGGCACTGAAGCTCTTATCA+TGG | 0.495214 | 1_3:-1363132 | Msa0095930:CDS |
| CTTGAAAAGTGTAATTCCAT+TGG | 0.498369 | 1_3:+1362356 | None:intergenic |
| CAGTCATTGGTGGACGCTCG+GGG | 0.498876 | 1_3:+1362280 | None:intergenic |
| AATCCTGAGCGTGTTTCTCC+AGG | 0.502802 | 1_3:-1363330 | Msa0095930:CDS |
| TTCTGAATCAAACGAAGAGA+AGG | 0.513016 | 1_3:+1363862 | None:intergenic |
| TATCATGGGGATTCTTATCG+AGG | 0.522562 | 1_3:-1363117 | Msa0095930:CDS |
| GGCACTGAAGCTCTTATCAT+GGG | 0.526277 | 1_3:-1363131 | Msa0095930:CDS |
| TAGCAGCCAAAGGACGGCGG+TGG | 0.529392 | 1_3:+1363746 | None:intergenic |
| TCTTGGCATTTGGTCTGATG+TGG | 0.533304 | 1_3:-1360867 | Msa0095930:CDS |
| TTTGTGCAGGAAAATGGATA+CGG | 0.534018 | 1_3:+1363988 | None:intergenic |
| ACGGAAGAAGCTTACGAGGT+GGG | 0.538870 | 1_3:+1363706 | None:intergenic |
| TGGATAGTATCTTGTGACCT+GGG | 0.541017 | 1_3:+1360840 | None:intergenic |
| TGAGCGTGTTTCTCCAGGCC+AGG | 0.541328 | 1_3:-1363325 | Msa0095930:CDS |
| AACCCTAACAATTCTTGGCT+AGG | 0.555839 | 1_3:-1363826 | Msa0095930:CDS |
| AGCTATAAAATCGTTTGCAA+TGG | 0.557048 | 1_3:-1363192 | Msa0095930:CDS |
| AAACGGTAGCAGCCAAAGGA+CGG | 0.558088 | 1_3:+1363740 | None:intergenic |
| ACGGCGGTGGAAAACGGAGA+CGG | 0.563060 | 1_3:+1363759 | None:intergenic |
| TTGGATAGTATCTTGTGACC+TGG | 0.565691 | 1_3:+1360839 | None:intergenic |
| TGAGCATCATCAGTCATTGG+TGG | 0.568919 | 1_3:+1362270 | None:intergenic |
| TGGCCTGGAGAAACACGCTC+AGG | 0.569149 | 1_3:+1363327 | None:intergenic |
| GTGACAAGGTTGAAGGGAGA+TGG | 0.572958 | 1_3:+1363896 | None:intergenic |
| AATGACTGATGATGCTCAGA+AGG | 0.575648 | 1_3:-1362265 | Msa0095930:CDS |
| ATCATGGGGATTCTTATCGA+GGG | 0.575992 | 1_3:-1363116 | Msa0095930:intron |
| AACGCAGTGACAAGGTTGAA+GGG | 0.586304 | 1_3:+1363890 | None:intergenic |
| TGTGAATTGCAGTTGATGGT+GGG | 0.597530 | 1_3:-1360913 | Msa0095930:intron |
| TCGATCAACAGCCCAATCAA+GGG | 0.597652 | 1_3:+1362242 | None:intergenic |
| CGGAAGAAGCTTACGAGGTG+GGG | 0.599247 | 1_3:+1363707 | None:intergenic |
| ATGTGAATTGCAGTTGATGG+TGG | 0.600685 | 1_3:-1360914 | Msa0095930:intron |
| ATGTTGTTAAGGATGAATGA+TGG | 0.608307 | 1_3:-1360763 | Msa0095930:exon |
| CACAAGATACTATCCAACCT+TGG | 0.608702 | 1_3:-1360833 | Msa0095930:CDS |
| TCTGAATCAAACGAAGAGAA+GGG | 0.609767 | 1_3:+1363863 | None:intergenic |
| GGTGGGGAGACTGAAGGAAA+CGG | 0.627016 | 1_3:+1363723 | None:intergenic |
| AAGGAAACGGTAGCAGCCAA+AGG | 0.627517 | 1_3:+1363736 | None:intergenic |
| TTACGAGGTGGGGAGACTGA+AGG | 0.627947 | 1_3:+1363717 | None:intergenic |
| AGGGTTCGAACGCAGTGACA+AGG | 0.640507 | 1_3:+1363882 | None:intergenic |
| GGATAGTATCTTGTGACCTG+GGG | 0.658006 | 1_3:+1360841 | None:intergenic |
| GCCAAGAATCATATGTGCTG+TGG | 0.666072 | 1_3:+1360883 | None:intergenic |
| GAAAATGCGACACTTTCGGA+AGG | 0.668630 | 1_3:+1363949 | None:intergenic |
| GCGGTGGAAAACGGAGACGG+AGG | 0.678617 | 1_3:+1363762 | None:intergenic |
| AGTCATTGGTGGACGCTCGG+GGG | 0.687506 | 1_3:+1362281 | None:intergenic |
| CGGTAGCAGCCAAAGGACGG+CGG | 0.692355 | 1_3:+1363743 | None:intergenic |
| GCACTGAAGCTCTTATCATG+GGG | 0.692529 | 1_3:-1363130 | Msa0095930:CDS |
| GTGAATTGCAGTTGATGGTG+GGG | 0.701928 | 1_3:-1360912 | Msa0095930:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAGTAAAAAAATAAAATAG+TGG | + | chr1_3:1361201-1361220 | None:intergenic | 15.0% |
| !!! | AATATTTTCAATATTATTCC+TGG | + | chr1_3:1361988-1362007 | None:intergenic | 15.0% |
| !!! | AACTTTTATTGTAAAGAAAT+GGG | + | chr1_3:1362127-1362146 | None:intergenic | 15.0% |
| !!! | AAACTTTTATTGTAAAGAAA+TGG | + | chr1_3:1362128-1362147 | None:intergenic | 15.0% |
| !!! | TTTCTTTACAATAAAAGTTT+TGG | - | chr1_3:1362128-1362147 | Msa0095930:intron | 15.0% |
| !!! | TGTTTTTAATTGCATTTTAA+CGG | - | chr1_3:1362527-1362546 | Msa0095930:intron | 15.0% |
| !! | ATTCACATGAATTTATAAAA+AGG | + | chr1_3:1363657-1363676 | None:intergenic | 15.0% |
| !!! | TTTTCTTGTTCATTCAATTA+TGG | - | chr1_3:1361322-1361341 | Msa0095930:intron | 20.0% |
| !!! | TTTTTTCTAAAGTTCTTTTG+AGG | - | chr1_3:1362033-1362052 | Msa0095930:intron | 20.0% |
| !!! | AATTTTGCCATTATTATGTT+TGG | - | chr1_3:1362061-1362080 | Msa0095930:intron | 20.0% |
| !!! | ATTTTGCCATTATTATGTTT+GGG | - | chr1_3:1362062-1362081 | Msa0095930:intron | 20.0% |
| !!! | ACTTTTATTGTAAAGAAATG+GGG | + | chr1_3:1362126-1362145 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAATGAGAAAAA+TGG | + | chr1_3:1362391-1362410 | None:intergenic | 20.0% |
| !! | AAAATGCAATTAAAAACATC+TGG | + | chr1_3:1362525-1362544 | None:intergenic | 20.0% |
| !! | GTTACAAAATATTGTCTAAT+TGG | + | chr1_3:1362669-1362688 | None:intergenic | 20.0% |
| !!! | AGTTCTTGATGAAATTTTAT+AGG | - | chr1_3:1362690-1362709 | Msa0095930:intron | 20.0% |
| !!! | ACTATTTTATTTAAATCCCT+AGG | - | chr1_3:1362799-1362818 | Msa0095930:intron | 20.0% |
| !!! | TACCTATTTTAATTATGTAC+TGG | - | chr1_3:1362860-1362879 | Msa0095930:intron | 20.0% |
| !! | ATCCAGTACATAATTAAAAT+AGG | + | chr1_3:1362865-1362884 | None:intergenic | 20.0% |
| !! | TTTAATTATGTACTGGATTA+TGG | - | chr1_3:1362867-1362886 | Msa0095930:intron | 20.0% |
| !! | TATCTTTAATCTTAAGTCAA+GGG | + | chr1_3:1362972-1362991 | None:intergenic | 20.0% |
| !! | TTGACTTAAGATTAAAGATA+GGG | - | chr1_3:1362972-1362991 | Msa0095930:intron | 20.0% |
| !! | AACAAAAATCATCTAAACAA+TGG | + | chr1_3:1363369-1363388 | None:intergenic | 20.0% |
| !! | GAAAATATATAAATTAGCAG+TGG | + | chr1_3:1363514-1363533 | None:intergenic | 20.0% |
| !! | AGTGACAGAAAAAATAATAT+GGG | + | chr1_3:1363536-1363555 | None:intergenic | 20.0% |
| !! | AAGTGACAGAAAAAATAATA+TGG | + | chr1_3:1363537-1363556 | None:intergenic | 20.0% |
| !! | ATCAAAAGTTTCATAAGAAA+AGG | + | chr1_3:1363593-1363612 | None:intergenic | 20.0% |
| !! | GATTCTTATCAAATATTCTA+TGG | - | chr1_3:1363610-1363629 | Msa0095930:intron | 20.0% |
| !! | AATTTCTAAACATGTTGTTA+AGG | - | chr1_3:1363809-1363828 | Msa0095930:CDS | 20.0% |
| ! | GACAAAACAACATTGAATAT+GGG | + | chr1_3:1360904-1360923 | None:intergenic | 25.0% |
| ! | AGACAAAACAACATTGAATA+TGG | + | chr1_3:1360905-1360924 | None:intergenic | 25.0% |
| !!! | AATGTTGTTTTGTCTCATTT+TGG | - | chr1_3:1360910-1360929 | Msa0095930:intron | 25.0% |
| !!! | TGTTGATTGTTGATTTTGTT+TGG | - | chr1_3:1361346-1361365 | Msa0095930:intron | 25.0% |
| ! | ACAAACACAAATTACACTTT+AGG | + | chr1_3:1361525-1361544 | None:intergenic | 25.0% |
| !! | AAGTGTAATTTGTGTTTGTT+TGG | - | chr1_3:1361526-1361545 | Msa0095930:intron | 25.0% |
| !!! | GTTTGGCTTTAGAATATAAA+TGG | - | chr1_3:1361543-1361562 | Msa0095930:intron | 25.0% |
| ! | ACCTTGTTAATATTGTTGAT+GGG | - | chr1_3:1361569-1361588 | Msa0095930:intron | 25.0% |
| ! | TTAATTAGTTGTTACGACTT+GGG | + | chr1_3:1361941-1361960 | None:intergenic | 25.0% |
| ! | TTTAATTAGTTGTTACGACT+TGG | + | chr1_3:1361942-1361961 | None:intergenic | 25.0% |
| ! | AAGTCGTAACAACTAATTAA+AGG | - | chr1_3:1361941-1361960 | Msa0095930:intron | 25.0% |
| ! | GTTGATCGAAAATTAAAATC+TGG | - | chr1_3:1362355-1362374 | Msa0095930:CDS | 25.0% |
| ! | ACAAAAACTATATGACTGTA+TGG | - | chr1_3:1362449-1362468 | Msa0095930:intron | 25.0% |
| !! | TTTTTGTCTCCTTTCTTTTA+TGG | - | chr1_3:1362565-1362584 | Msa0095930:intron | 25.0% |
| !! | GTGACTAACATAATTTGTAT+TGG | - | chr1_3:1362712-1362731 | Msa0095930:intron | 25.0% |
| !! | CTTCAAGCACATATTTTATT+TGG | + | chr1_3:1362764-1362783 | None:intergenic | 25.0% |
| ! | CTATCTTTAATCTTAAGTCA+AGG | + | chr1_3:1362973-1362992 | None:intergenic | 25.0% |
| ! | CTTGACTTAAGATTAAAGAT+AGG | - | chr1_3:1362971-1362990 | Msa0095930:intron | 25.0% |
| ! | TGACTTAAGATTAAAGATAG+GGG | - | chr1_3:1362973-1362992 | Msa0095930:intron | 25.0% |
| !!! | AACTGTCTTTTTCACATTTT+TGG | - | chr1_3:1363329-1363348 | Msa0095930:CDS | 25.0% |
| ! | GGACAACTAATAAGAATAAA+GGG | + | chr1_3:1363417-1363436 | None:intergenic | 25.0% |
| ! | CTTTATTCTTATTAGTTGTC+CGG | - | chr1_3:1363416-1363435 | Msa0095930:intron | 25.0% |
| ! | ACAAAATAAAACTCAAACAC+CGG | + | chr1_3:1363438-1363457 | None:intergenic | 25.0% |
| !!! | GTGTTTGAGTTTTATTTTGT+TGG | - | chr1_3:1363438-1363457 | Msa0095930:intron | 25.0% |
| ! | AACAACATGTTTAGAAATTG+AGG | + | chr1_3:1363808-1363827 | None:intergenic | 25.0% |
| !! | AATGTTTTTGTGCAGGAAAA+TGG | + | chr1_3:1360604-1360623 | None:intergenic | 30.0% |
| TAACAAACCCTAACAATTCT+TGG | - | chr1_3:1360752-1360771 | Msa0095930:exon | 30.0% | |
| AACAACATTGAATATGGGAA+CGG | + | chr1_3:1360899-1360918 | None:intergenic | 30.0% | |
| CATGATATTGATACTCACTT+GGG | + | chr1_3:1361289-1361308 | None:intergenic | 30.0% | |
| ACATGATATTGATACTCACT+TGG | + | chr1_3:1361290-1361309 | None:intergenic | 30.0% | |
| AGCTATAAAATCGTTTGCAA+TGG | - | chr1_3:1361391-1361410 | Msa0095930:intron | 30.0% | |
| AAACTCAAGTTTACTACTAC+TGG | - | chr1_3:1361431-1361450 | Msa0095930:intron | 30.0% | |
| GACCTTGTTAATATTGTTGA+TGG | - | chr1_3:1361568-1361587 | Msa0095930:intron | 30.0% | |
| TCCCATCAACAATATTAACA+AGG | + | chr1_3:1361573-1361592 | None:intergenic | 30.0% | |
| AAATGACAGAAATTCGTCTA+TGG | + | chr1_3:1361723-1361742 | None:intergenic | 30.0% | |
| ATGACTGCTAGAATAATACT+TGG | - | chr1_3:1361890-1361909 | Msa0095930:intron | 30.0% | |
| !! | AATAATACTTGGCTTGTGTA+AGG | - | chr1_3:1361901-1361920 | Msa0095930:intron | 30.0% |
| ATTGTAAAGAAATGGGGTAA+GGG | + | chr1_3:1362120-1362139 | None:intergenic | 30.0% | |
| TATTGTAAAGAAATGGGGTA+AGG | + | chr1_3:1362121-1362140 | None:intergenic | 30.0% | |
| ! | CATTAAGCCTACTCTATTTT+GGG | - | chr1_3:1362166-1362185 | Msa0095930:intron | 30.0% |
| ! | ATTAAGCCTACTCTATTTTG+GGG | - | chr1_3:1362167-1362186 | Msa0095930:intron | 30.0% |
| ! | CTTGAAAAGTGTAATTCCAT+TGG | + | chr1_3:1362230-1362249 | None:intergenic | 30.0% |
| ! | CAATGGAATTACACTTTTCA+AGG | - | chr1_3:1362228-1362247 | Msa0095930:intron | 30.0% |
| !! | GATGAAATTGTGAAAGTACT+TGG | - | chr1_3:1362256-1362275 | Msa0095930:CDS | 30.0% |
| AGCATCAATCCATAAAAGAA+AGG | + | chr1_3:1362577-1362596 | None:intergenic | 30.0% | |
| !! | TCTTTTATGGATTGATGCTA+TGG | - | chr1_3:1362578-1362597 | Msa0095930:intron | 30.0% |
| ! | GATGCTATGGTTTGTATAAA+TGG | - | chr1_3:1362591-1362610 | Msa0095930:intron | 30.0% |
| AAATGGAACTGAAAAATCGT+AGG | - | chr1_3:1362608-1362627 | Msa0095930:intron | 30.0% | |
| TGTATTGGAATTCATGTTTC+TGG | - | chr1_3:1362727-1362746 | Msa0095930:intron | 30.0% | |
| GTATTGGAATTCATGTTTCT+GGG | - | chr1_3:1362728-1362747 | Msa0095930:intron | 30.0% | |
| ATATGTGCTTGAAGTTGAAA+AGG | - | chr1_3:1362770-1362789 | Msa0095930:intron | 30.0% | |
| ! | TAACTAGAAATCTAGAGTCA+TGG | + | chr1_3:1362842-1362861 | None:intergenic | 30.0% |
| AAAGCTTCAAACAAAAGGTT+GGG | - | chr1_3:1362922-1362941 | Msa0095930:intron | 30.0% | |
| ! | CATTCAGGTTTATGATGATT+TGG | - | chr1_3:1363062-1363081 | Msa0095930:intron | 30.0% |
| !! | TTAGCTTTTGCAAAGTCATT+TGG | - | chr1_3:1363227-1363246 | Msa0095930:intron | 30.0% |
| AAATCATCTAAACAATGGCA+GGG | + | chr1_3:1363364-1363383 | None:intergenic | 30.0% | |
| AAAATCATCTAAACAATGGC+AGG | + | chr1_3:1363365-1363384 | None:intergenic | 30.0% | |
| CGGACAACTAATAAGAATAA+AGG | + | chr1_3:1363418-1363437 | None:intergenic | 30.0% | |
| ! | TATAAATACGAATGCCACTT+TGG | - | chr1_3:1363483-1363502 | Msa0095930:intron | 30.0% |
| !! | ATAAATACGAATGCCACTTT+GGG | - | chr1_3:1363484-1363503 | Msa0095930:intron | 30.0% |
| ATGTTGTTAAGGATGAATGA+TGG | - | chr1_3:1363820-1363839 | Msa0095930:CDS | 30.0% | |
| TGTACAATAGATAGATCAAC+AGG | - | chr1_3:1363988-1364007 | Msa0095930:five_prime_UTR | 30.0% | |
| TTTGTGCAGGAAAATGGATA+CGG | + | chr1_3:1360598-1360617 | None:intergenic | 35.0% | |
| !! | TGGATAGAATGTTTTTGTGC+AGG | + | chr1_3:1360611-1360630 | None:intergenic | 35.0% |
| ! | ATTTTCGTCTTGGAAGGAAA+TGG | - | chr1_3:1360651-1360670 | Msa0095930:intron | 35.0% |
| TCTGAATCAAACGAAGAGAA+GGG | + | chr1_3:1360723-1360742 | None:intergenic | 35.0% | |
| TTCTGAATCAAACGAAGAGA+AGG | + | chr1_3:1360724-1360743 | None:intergenic | 35.0% | |
| TTCCTAGCCAAGAATTGTTA+GGG | + | chr1_3:1360762-1360781 | None:intergenic | 35.0% | |
| TTGGCTAGGAACCAAAATTA+GGG | - | chr1_3:1360771-1360790 | Msa0095930:CDS | 35.0% | |
| ! | GCAATGTTGAACCCTAATTT+TGG | + | chr1_3:1360785-1360804 | None:intergenic | 35.0% |
| ! | TTTGTTTGGTGAAAGCAAGA+TGG | - | chr1_3:1361360-1361379 | Msa0095930:intron | 35.0% |
| TTTCACCTGAACTTACTTTC+TGG | - | chr1_3:1361856-1361875 | Msa0095930:intron | 35.0% | |
| TTGCCATTATTATGTTTGGG+AGG | - | chr1_3:1362065-1362084 | Msa0095930:intron | 35.0% | |
| AAGCCTCCCAAACATAATAA+TGG | + | chr1_3:1362071-1362090 | None:intergenic | 35.0% | |
| ! | GCATTAAGCCTACTCTATTT+TGG | - | chr1_3:1362165-1362184 | Msa0095930:intron | 35.0% |
| !! | TTAAGCCTACTCTATTTTGG+GGG | - | chr1_3:1362168-1362187 | Msa0095930:intron | 35.0% |
| TATCATCAATTGCCAAAGAG+TGG | - | chr1_3:1362416-1362435 | Msa0095930:intron | 35.0% | |
| TAATCAACGTTTGAATGCCA+AGG | + | chr1_3:1362635-1362654 | None:intergenic | 35.0% | |
| TATTTAAATCCCTAGGTCAG+AGG | - | chr1_3:1362806-1362825 | Msa0095930:intron | 35.0% | |
| TAATAAAAGCCTCTGACCTA+GGG | + | chr1_3:1362818-1362837 | None:intergenic | 35.0% | |
| TTAATAAAAGCCTCTGACCT+AGG | + | chr1_3:1362819-1362838 | None:intergenic | 35.0% | |
| CAAAGCTTCAAACAAAAGGT+TGG | - | chr1_3:1362921-1362940 | Msa0095930:intron | 35.0% | |
| TGTCAAATATTCCTGCATTC+AGG | - | chr1_3:1363047-1363066 | Msa0095930:intron | 35.0% | |
| ATCATCATAAACCTGAATGC+AGG | + | chr1_3:1363061-1363080 | None:intergenic | 35.0% | |
| ! | GGCTTTATCTTGGAATTCAT+AGG | + | chr1_3:1363161-1363180 | None:intergenic | 35.0% |
| AATTCCAAGATAAAGCCCTT+GGG | - | chr1_3:1363164-1363183 | Msa0095930:CDS | 35.0% | |
| CTAGAATGATCTTGTGACAA+AGG | - | chr1_3:1363391-1363410 | Msa0095930:intron | 35.0% | |
| !! | TAAATACGAATGCCACTTTG+GGG | - | chr1_3:1363485-1363504 | Msa0095930:intron | 35.0% |
| ! | TCTGTCACTTATTTGCTGAA+TGG | - | chr1_3:1363547-1363566 | Msa0095930:intron | 35.0% |
| TTCATGTGAATTGCAGTTGA+TGG | - | chr1_3:1363666-1363685 | Msa0095930:intron | 35.0% | |
| CACATATGATTCTTGGCATT+TGG | - | chr1_3:1363706-1363725 | Msa0095930:intron | 35.0% | |
| !! | CTTTTTCGTCATTAATGCCA+AGG | + | chr1_3:1363770-1363789 | None:intergenic | 35.0% |
| AGACGAAAATGCGACACTTT+CGG | + | chr1_3:1360641-1360660 | None:intergenic | 40.0% | |
| !!! | AAAGTGTCGCATTTTCGTCT+TGG | - | chr1_3:1360641-1360660 | Msa0095930:three_prime_UTR | 40.0% |
| AACCCTAACAATTCTTGGCT+AGG | - | chr1_3:1360757-1360776 | Msa0095930:exon | 40.0% | |
| GTTCCTAGCCAAGAATTGTT+AGG | + | chr1_3:1360763-1360782 | None:intergenic | 40.0% | |
| CTTGGCTAGGAACCAAAATT+AGG | - | chr1_3:1360770-1360789 | Msa0095930:CDS | 40.0% | |
| ATACTCACTTGGGAATTTCC+TGG | + | chr1_3:1361279-1361298 | None:intergenic | 40.0% | |
| TATCATGGGGATTCTTATCG+AGG | - | chr1_3:1361466-1361485 | Msa0095930:intron | 40.0% | |
| ATCATGGGGATTCTTATCGA+GGG | - | chr1_3:1361467-1361486 | Msa0095930:intron | 40.0% | |
| GAACTTAGCTCACTGCAATT+AGG | - | chr1_3:1361591-1361610 | Msa0095930:intron | 40.0% | |
| !! | GTTTCCATGTTCTAGAAGCT+AGG | - | chr1_3:1361690-1361709 | Msa0095930:intron | 40.0% |
| CTCTACCAGAAAGTAAGTTC+AGG | + | chr1_3:1361864-1361883 | None:intergenic | 40.0% | |
| ! | CAGAGACTTGATTTTTCACC+AGG | - | chr1_3:1361967-1361986 | Msa0095930:intron | 40.0% |
| TAGAACCCCCAAAATAGAGT+AGG | + | chr1_3:1362176-1362195 | None:intergenic | 40.0% | |
| !! | TACTCTATTTTGGGGGTTCT+AGG | - | chr1_3:1362175-1362194 | Msa0095930:intron | 40.0% |
| TTCTGAGCATCATCAGTCAT+TGG | + | chr1_3:1362319-1362338 | None:intergenic | 40.0% | |
| ! | AATGACTGATGATGCTCAGA+AGG | - | chr1_3:1362318-1362337 | Msa0095930:CDS | 40.0% |
| !! | GTAAGAAGCATTCCACTCTT+TGG | + | chr1_3:1362431-1362450 | None:intergenic | 40.0% |
| ACTGAAAAATCGTAGGACCT+TGG | - | chr1_3:1362615-1362634 | Msa0095930:intron | 40.0% | |
| TGCTTGAAGTTGAAAAGGAG+TGG | - | chr1_3:1362775-1362794 | Msa0095930:intron | 40.0% | |
| CGTGCAAAGCTTCAAACAAA+AGG | - | chr1_3:1362917-1362936 | Msa0095930:intron | 40.0% | |
| GAATTCCAAGATAAAGCCCT+TGG | - | chr1_3:1363163-1363182 | Msa0095930:CDS | 40.0% | |
| GAAAATTCACAGTGACTCAC+CGG | + | chr1_3:1363193-1363212 | None:intergenic | 40.0% | |
| !!! | CATTTGGCTTGCTGCAATTT+TGG | - | chr1_3:1363243-1363262 | Msa0095930:intron | 40.0% |
| TCATGGCATGTTTGGTATCA+CGG | + | chr1_3:1363277-1363296 | None:intergenic | 40.0% | |
| ! | CTTATTTGCTGAATGGAGTG+TGG | - | chr1_3:1363554-1363573 | Msa0095930:intron | 40.0% |
| !! | ATGTGAATTGCAGTTGATGG+TGG | - | chr1_3:1363669-1363688 | Msa0095930:intron | 40.0% |
| !! | TGTGAATTGCAGTTGATGGT+GGG | - | chr1_3:1363670-1363689 | Msa0095930:intron | 40.0% |
| ACCACAGCACATATGATTCT+TGG | - | chr1_3:1363699-1363718 | Msa0095930:intron | 40.0% | |
| TGGATAGTATCTTGTGACCT+GGG | + | chr1_3:1363746-1363765 | None:intergenic | 40.0% | |
| TTGGATAGTATCTTGTGACC+TGG | + | chr1_3:1363747-1363766 | None:intergenic | 40.0% | |
| CACAAGATACTATCCAACCT+TGG | - | chr1_3:1363750-1363769 | Msa0095930:CDS | 40.0% | |
| TTCGTCATTAATGCCAAGGT+TGG | + | chr1_3:1363766-1363785 | None:intergenic | 40.0% | |
| CGAAAAAGCTAAAGAGCTAG+AGG | - | chr1_3:1363782-1363801 | Msa0095930:CDS | 40.0% | |
| GAAAATGCGACACTTTCGGA+AGG | + | chr1_3:1360637-1360656 | None:intergenic | 45.0% | |
| ! | TGTCGCATTTTCGTCTTGGA+AGG | - | chr1_3:1360645-1360664 | Msa0095930:intron | 45.0% |
| AACGCAGTGACAAGGTTGAA+GGG | + | chr1_3:1360696-1360715 | None:intergenic | 45.0% | |
| ! | TGGCACTGAAGCTCTTATCA+TGG | - | chr1_3:1361451-1361470 | Msa0095930:intron | 45.0% |
| ! | GGCACTGAAGCTCTTATCAT+GGG | - | chr1_3:1361452-1361471 | Msa0095930:intron | 45.0% |
| GCACTGAAGCTCTTATCATG+GGG | - | chr1_3:1361453-1361472 | Msa0095930:intron | 45.0% | |
| !! | TCAGCCTAGCTTCTAGAACA+TGG | + | chr1_3:1361697-1361716 | None:intergenic | 45.0% |
| ! | AGTTGTTACGACTTGGGAGA+GGG | + | chr1_3:1361935-1361954 | None:intergenic | 45.0% |
| ! | TAGTTGTTACGACTTGGGAG+AGG | + | chr1_3:1361936-1361955 | None:intergenic | 45.0% |
| ! | AGCAAGTTTTTGCGAGCCAA+TGG | - | chr1_3:1362211-1362230 | Msa0095930:intron | 45.0% |
| TGAGCATCATCAGTCATTGG+TGG | + | chr1_3:1362316-1362335 | None:intergenic | 45.0% | |
| TCGATCAACAGCCCAATCAA+GGG | + | chr1_3:1362344-1362363 | None:intergenic | 45.0% | |
| TTCGATCAACAGCCCAATCA+AGG | + | chr1_3:1362345-1362364 | None:intergenic | 45.0% | |
| GATTAAAGATAGGGGCCAGT+CGG | - | chr1_3:1362981-1363000 | Msa0095930:intron | 45.0% | |
| ATTAAAGATAGGGGCCAGTC+GGG | - | chr1_3:1362982-1363001 | Msa0095930:intron | 45.0% | |
| !!! | TGGTTCTGAGGCTTTTCTTC+AGG | - | chr1_3:1363014-1363033 | Msa0095930:intron | 45.0% |
| ! | GAAACCCAAGGGCTTTATCT+TGG | + | chr1_3:1363171-1363190 | None:intergenic | 45.0% |
| AGATAAAGCCCTTGGGTTTC+CGG | - | chr1_3:1363171-1363190 | Msa0095930:CDS | 45.0% | |
| CTCTCTTCTCATGGCATGTT+TGG | + | chr1_3:1363285-1363304 | None:intergenic | 45.0% | |
| !! | GTGAATTGCAGTTGATGGTG+GGG | - | chr1_3:1363671-1363690 | Msa0095930:intron | 45.0% |
| GCCAAGAATCATATGTGCTG+TGG | + | chr1_3:1363703-1363722 | None:intergenic | 45.0% | |
| TCTTGGCATTTGGTCTGATG+TGG | - | chr1_3:1363716-1363735 | Msa0095930:intron | 45.0% | |
| GGATAGTATCTTGTGACCTG+GGG | + | chr1_3:1363745-1363764 | None:intergenic | 45.0% | |
| GCGACACTTTCGGAAGGAAT+TGG | + | chr1_3:1360631-1360650 | None:intergenic | 50.0% | |
| GTGACAAGGTTGAAGGGAGA+TGG | + | chr1_3:1360690-1360709 | None:intergenic | 50.0% | |
| GAACGCAGTGACAAGGTTGA+AGG | + | chr1_3:1360697-1360716 | None:intergenic | 50.0% | |
| AAACGGTAGCAGCCAAAGGA+CGG | + | chr1_3:1360846-1360865 | None:intergenic | 50.0% | |
| AAGGAAACGGTAGCAGCCAA+AGG | + | chr1_3:1360850-1360869 | None:intergenic | 50.0% | |
| ACGGAAGAAGCTTACGAGGT+GGG | + | chr1_3:1360880-1360899 | None:intergenic | 50.0% | |
| AACGGAAGAAGCTTACGAGG+TGG | + | chr1_3:1360881-1360900 | None:intergenic | 50.0% | |
| AATCCTGAGCGTGTTTCTCC+AGG | - | chr1_3:1361253-1361272 | Msa0095930:intron | 50.0% | |
| ATGGGGTAAGGGTCACAACA+CGG | + | chr1_3:1362109-1362128 | None:intergenic | 50.0% | |
| !! | GGGGGTTCTAGGTACTAATC+TGG | - | chr1_3:1362186-1362205 | Msa0095930:intron | 50.0% |
| ! | ATCAGTCATTGGTGGACGCT+CGG | + | chr1_3:1362308-1362327 | None:intergenic | 50.0% |
| ATGCTCAGAAGGCCCTTGAT+TGG | - | chr1_3:1362329-1362348 | Msa0095930:CDS | 50.0% | |
| TGCTCAGAAGGCCCTTGATT+GGG | - | chr1_3:1362330-1362349 | Msa0095930:CDS | 50.0% | |
| AACCAAAACACAAGCCCGAC+TGG | + | chr1_3:1362999-1363018 | None:intergenic | 50.0% | |
| !!! | GGGCTTGTGTTTTGGTTCTG+AGG | - | chr1_3:1363002-1363021 | Msa0095930:intron | 50.0% |
| TGGCATGTTTGGTATCACGG+TGG | + | chr1_3:1363274-1363293 | None:intergenic | 50.0% | |
| ACATGCCATGAGAAGAGAGC+AGG | - | chr1_3:1363286-1363305 | Msa0095930:intron | 50.0% | |
| CATGCCATGAGAAGAGAGCA+GGG | - | chr1_3:1363287-1363306 | Msa0095930:intron | 50.0% | |
| ATGCCATGAGAAGAGAGCAG+GGG | - | chr1_3:1363288-1363307 | Msa0095930:intron | 50.0% | |
| AGGGTTCGAACGCAGTGACA+AGG | + | chr1_3:1360704-1360723 | None:intergenic | 55.0% | |
| CAAAGGACGGCGGTGGAAAA+CGG | + | chr1_3:1360833-1360852 | None:intergenic | 55.0% | |
| GGTGGGGAGACTGAAGGAAA+CGG | + | chr1_3:1360863-1360882 | None:intergenic | 55.0% | |
| TTACGAGGTGGGGAGACTGA+AGG | + | chr1_3:1360869-1360888 | None:intergenic | 55.0% | |
| CGGAAGAAGCTTACGAGGTG+GGG | + | chr1_3:1360879-1360898 | None:intergenic | 55.0% | |
| GGGAACGGAAGAAGCTTACG+AGG | + | chr1_3:1360884-1360903 | None:intergenic | 55.0% | |
| CACTTGGGAATTTCCTGGCC+TGG | + | chr1_3:1361274-1361293 | None:intergenic | 55.0% | |
| TGGGGTAAGGGTCACAACAC+GGG | + | chr1_3:1362108-1362127 | None:intergenic | 55.0% | |
| ! | TCAGTCATTGGTGGACGCTC+GGG | + | chr1_3:1362307-1362326 | None:intergenic | 55.0% |
| GTGACTCACCGGAAACCCAA+GGG | + | chr1_3:1363182-1363201 | None:intergenic | 55.0% | |
| AGTGACTCACCGGAAACCCA+AGG | + | chr1_3:1363183-1363202 | None:intergenic | 55.0% | |
| CAACCCCTGCTCTCTTCTCA+TGG | + | chr1_3:1363294-1363313 | None:intergenic | 55.0% | |
| TAGCAGTGGCTACCCCAAAG+TGG | + | chr1_3:1363500-1363519 | None:intergenic | 55.0% | |
| TGGTCTGATGTGGATTCCCC+AGG | - | chr1_3:1363726-1363745 | Msa0095930:CDS | 55.0% | |
| ACGGCGGTGGAAAACGGAGA+CGG | + | chr1_3:1360827-1360846 | None:intergenic | 60.0% | |
| ! | CGTTTTCCACCGCCGTCCTT+TGG | - | chr1_3:1360831-1360850 | Msa0095930:CDS | 60.0% |
| TGGCCTGGAGAAACACGCTC+AGG | + | chr1_3:1361259-1361278 | None:intergenic | 60.0% | |
| TGAGCGTGTTTCTCCAGGCC+AGG | - | chr1_3:1361258-1361277 | Msa0095930:intron | 60.0% | |
| ! | AGTCATTGGTGGACGCTCGG+GGG | + | chr1_3:1362305-1362324 | None:intergenic | 60.0% |
| ! | CAGTCATTGGTGGACGCTCG+GGG | + | chr1_3:1362306-1362325 | None:intergenic | 60.0% |
| ! | GGCCAGTCGGGCTTGTGTTT+TGG | - | chr1_3:1362994-1363013 | Msa0095930:intron | 60.0% |
| GCGGTGGAAAACGGAGACGG+AGG | + | chr1_3:1360824-1360843 | None:intergenic | 65.0% | |
| TAGCAGCCAAAGGACGGCGG+TGG | + | chr1_3:1360840-1360859 | None:intergenic | 65.0% | |
| CGGTAGCAGCCAAAGGACGG+CGG | + | chr1_3:1360843-1360862 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 1360594 | 1364011 | 1360594 | ID=Msa0095930;Name=Msa0095930 |
| chr1_3 | mRNA | 1360594 | 1364011 | 1360594 | ID=Msa0095930-mRNA-1;Parent=Msa0095930;Name=Msa0095930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=76|1|1|1|0.8|0.66|6|101|233 |
| chr1_3 | exon | 1360594 | 1360661 | 1360594 | ID=Msa0095930-mRNA-1:exon:268;Parent=Msa0095930-mRNA-1 |
| chr1_3 | exon | 1360733 | 1360923 | 1360733 | ID=Msa0095930-mRNA-1:exon:267;Parent=Msa0095930-mRNA-1 |
| chr1_3 | exon | 1362229 | 1362408 | 1362229 | ID=Msa0095930-mRNA-1:exon:266;Parent=Msa0095930-mRNA-1 |
| chr1_3 | exon | 1363117 | 1363226 | 1363117 | ID=Msa0095930-mRNA-1:exon:265;Parent=Msa0095930-mRNA-1 |
| chr1_3 | exon | 1363315 | 1363353 | 1363315 | ID=Msa0095930-mRNA-1:exon:264;Parent=Msa0095930-mRNA-1 |
| chr1_3 | exon | 1363721 | 1364011 | 1363721 | ID=Msa0095930-mRNA-1:exon:263;Parent=Msa0095930-mRNA-1 |
| chr1_3 | five_prime_UTR | 1363936 | 1364011 | 1363936 | ID=Msa0095930-mRNA-1:five_prime_utr;Parent=Msa0095930-mRNA-1 |
| chr1_3 | CDS | 1363721 | 1363935 | 1363721 | ID=Msa0095930-mRNA-1:cds;Parent=Msa0095930-mRNA-1 |
| chr1_3 | CDS | 1363315 | 1363353 | 1363315 | ID=Msa0095930-mRNA-1:cds;Parent=Msa0095930-mRNA-1 |
| chr1_3 | CDS | 1363117 | 1363226 | 1363117 | ID=Msa0095930-mRNA-1:cds;Parent=Msa0095930-mRNA-1 |
| chr1_3 | CDS | 1362229 | 1362408 | 1362229 | ID=Msa0095930-mRNA-1:cds;Parent=Msa0095930-mRNA-1 |
| chr1_3 | CDS | 1360766 | 1360923 | 1360766 | ID=Msa0095930-mRNA-1:cds;Parent=Msa0095930-mRNA-1 |
| chr1_3 | three_prime_UTR | 1360733 | 1360765 | 1360733 | ID=Msa0095930-mRNA-1:three_prime_utr;Parent=Msa0095930-mRNA-1 |
| chr1_3 | three_prime_UTR | 1360594 | 1360661 | 1360594 | ID=Msa0095930-mRNA-1:three_prime_utr;Parent=Msa0095930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
