Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412380 | sp|Q8GW78|CLPT2_ARATH | 55.238 | 210 | 82 | 4 | 28 | 233 | 40 | 241 | 4.13e-68 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412380 | G7KG47 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 1.86e-163 | 460 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095930 | Msa1412380 | 0.997644 | 2.413877e-246 | -8.615850e-47 |
| Msa0253510 | Msa1412380 | 0.828234 | 1.006863e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412380 | MtrunA17_Chr5g0398561 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 3.59e-167 | 460 |
| Msa1412380 | MtrunA17_Chr6g0475931 | 45.989 | 187 | 96 | 3 | 38 | 221 | 40 | 224 | 7.13e-49 | 160 |
| Msa1412380 | MtrunA17_Chr3g0131711 | 27.326 | 172 | 112 | 5 | 7 | 176 | 23 | 183 | 6.64e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412380 | AT4G12060.1 | 55.238 | 210 | 82 | 4 | 28 | 233 | 40 | 241 | 4.20e-69 | 212 |
| Msa1412380 | AT4G25370.1 | 53.571 | 168 | 77 | 1 | 62 | 229 | 63 | 229 | 2.55e-60 | 190 |
Find 71 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCTAGGAACCAAAATT+AGG | 0.149394 | tig0023889:-68152 | Msa1412380:CDS |
| GCAATGTTGAACCCTAATTT+TGG | 0.225097 | tig0023889:+68140 | None:intergenic |
| TAACAAACCCTAACAATTCT+TGG | 0.295248 | tig0023889:-68170 | Msa1412380:CDS |
| GTTCCTAGCCAAGAATTGTT+AGG | 0.304035 | tig0023889:+68162 | None:intergenic |
| CACATATGATTCTTGGCATT+TGG | 0.318600 | tig0023889:-65216 | Msa1412380:CDS |
| TTGGCTAGGAACCAAAATTA+GGG | 0.344080 | tig0023889:-68151 | Msa1412380:CDS |
| GTTGATCGAAAATTAAAATC+TGG | 0.351809 | tig0023889:-66567 | Msa1412380:intron |
| GCGACACTTTCGGAAGGAAT+TGG | 0.358696 | tig0023889:+68294 | None:intergenic |
| ATACTCACTTGGGAATTTCC+TGG | 0.365990 | tig0023889:+67646 | None:intergenic |
| ACCACAGCACATATGATTCT+TGG | 0.387411 | tig0023889:-65223 | Msa1412380:CDS |
| AGACGAAAATGCGACACTTT+CGG | 0.390425 | tig0023889:+68284 | None:intergenic |
| AATTTCTAAACATGTTGTTA+AGG | 0.398372 | tig0023889:-65113 | Msa1412380:CDS |
| TCAGTCATTGGTGGACGCTC+GGG | 0.405748 | tig0023889:+66618 | None:intergenic |
| AACAACATGTTTAGAAATTG+AGG | 0.411712 | tig0023889:+65117 | None:intergenic |
| TGCTCAGAAGGCCCTTGATT+GGG | 0.418536 | tig0023889:-66592 | Msa1412380:CDS |
| ATCAGTCATTGGTGGACGCT+CGG | 0.419261 | tig0023889:+66617 | None:intergenic |
| CACTTGGGAATTTCCTGGCC+TGG | 0.426904 | tig0023889:+67651 | None:intergenic |
| ATGCTCAGAAGGCCCTTGAT+TGG | 0.427901 | tig0023889:-66593 | Msa1412380:CDS |
| AAACTCAAGTTTACTACTAC+TGG | 0.429106 | tig0023889:-67491 | Msa1412380:CDS |
| TTCGATCAACAGCCCAATCA+AGG | 0.438437 | tig0023889:+66580 | None:intergenic |
| CAAAGGACGGCGGTGGAAAA+CGG | 0.443160 | tig0023889:+68092 | None:intergenic |
| TGTACAATAGATAGATCAAC+AGG | 0.451645 | tig0023889:-64935 | Msa1412380:three_prime_UTR |
| TTCCTAGCCAAGAATTGTTA+GGG | 0.461149 | tig0023889:+68163 | None:intergenic |
| TTCTGAGCATCATCAGTCAT+TGG | 0.477835 | tig0023889:+66606 | None:intergenic |
| TTCGTCATTAATGCCAAGGT+TGG | 0.479778 | tig0023889:+65159 | None:intergenic |
| GATGAAATTGTGAAAGTACT+TGG | 0.480263 | tig0023889:-66666 | Msa1412380:CDS |
| TGGTCTGATGTGGATTCCCC+AGG | 0.492555 | tig0023889:-65196 | Msa1412380:CDS |
| GAACGCAGTGACAAGGTTGA+AGG | 0.494563 | tig0023889:+68228 | None:intergenic |
| TGGCACTGAAGCTCTTATCA+TGG | 0.495214 | tig0023889:-67471 | Msa1412380:CDS |
| CTTGAAAAGTGTAATTCCAT+TGG | 0.498369 | tig0023889:+66695 | None:intergenic |
| CAGTCATTGGTGGACGCTCG+GGG | 0.498876 | tig0023889:+66619 | None:intergenic |
| AATCCTGAGCGTGTTTCTCC+AGG | 0.502802 | tig0023889:-67669 | Msa1412380:CDS |
| TTCTGAATCAAACGAAGAGA+AGG | 0.513016 | tig0023889:+68201 | None:intergenic |
| TATCATGGGGATTCTTATCG+AGG | 0.522562 | tig0023889:-67456 | Msa1412380:CDS |
| GGCACTGAAGCTCTTATCAT+GGG | 0.526277 | tig0023889:-67470 | Msa1412380:CDS |
| TAGCAGCCAAAGGACGGCGG+TGG | 0.529392 | tig0023889:+68085 | None:intergenic |
| TCTTGGCATTTGGTCTGATG+TGG | 0.533304 | tig0023889:-65206 | Msa1412380:CDS |
| TTTGTGCAGGAAAATGGATA+CGG | 0.534018 | tig0023889:+68327 | None:intergenic |
| ACGGAAGAAGCTTACGAGGT+GGG | 0.538870 | tig0023889:+68045 | None:intergenic |
| TGGATAGTATCTTGTGACCT+GGG | 0.541017 | tig0023889:+65179 | None:intergenic |
| TGAGCGTGTTTCTCCAGGCC+AGG | 0.541328 | tig0023889:-67664 | Msa1412380:CDS |
| AACCCTAACAATTCTTGGCT+AGG | 0.555839 | tig0023889:-68165 | Msa1412380:CDS |
| AGCTATAAAATCGTTTGCAA+TGG | 0.557048 | tig0023889:-67531 | Msa1412380:CDS |
| AAACGGTAGCAGCCAAAGGA+CGG | 0.558088 | tig0023889:+68079 | None:intergenic |
| ACGGCGGTGGAAAACGGAGA+CGG | 0.563060 | tig0023889:+68098 | None:intergenic |
| TTGGATAGTATCTTGTGACC+TGG | 0.565691 | tig0023889:+65178 | None:intergenic |
| TGAGCATCATCAGTCATTGG+TGG | 0.568919 | tig0023889:+66609 | None:intergenic |
| TGGCCTGGAGAAACACGCTC+AGG | 0.569149 | tig0023889:+67666 | None:intergenic |
| GTGACAAGGTTGAAGGGAGA+TGG | 0.572958 | tig0023889:+68235 | None:intergenic |
| AATGACTGATGATGCTCAGA+AGG | 0.575648 | tig0023889:-66604 | Msa1412380:CDS |
| ATCATGGGGATTCTTATCGA+GGG | 0.575992 | tig0023889:-67455 | Msa1412380:intron |
| AACGCAGTGACAAGGTTGAA+GGG | 0.586304 | tig0023889:+68229 | None:intergenic |
| TGTGAATTGCAGTTGATGGT+GGG | 0.597530 | tig0023889:-65252 | Msa1412380:intron |
| TCGATCAACAGCCCAATCAA+GGG | 0.597652 | tig0023889:+66581 | None:intergenic |
| CGGAAGAAGCTTACGAGGTG+GGG | 0.599247 | tig0023889:+68046 | None:intergenic |
| ATGTGAATTGCAGTTGATGG+TGG | 0.600685 | tig0023889:-65253 | Msa1412380:intron |
| ATGTTGTTAAGGATGAATGA+TGG | 0.608307 | tig0023889:-65102 | Msa1412380:exon |
| CACAAGATACTATCCAACCT+TGG | 0.608702 | tig0023889:-65172 | Msa1412380:CDS |
| TCTGAATCAAACGAAGAGAA+GGG | 0.609767 | tig0023889:+68202 | None:intergenic |
| GGTGGGGAGACTGAAGGAAA+CGG | 0.627016 | tig0023889:+68062 | None:intergenic |
| AAGGAAACGGTAGCAGCCAA+AGG | 0.627517 | tig0023889:+68075 | None:intergenic |
| TTACGAGGTGGGGAGACTGA+AGG | 0.627947 | tig0023889:+68056 | None:intergenic |
| AGGGTTCGAACGCAGTGACA+AGG | 0.640507 | tig0023889:+68221 | None:intergenic |
| GGATAGTATCTTGTGACCTG+GGG | 0.658006 | tig0023889:+65180 | None:intergenic |
| GCCAAGAATCATATGTGCTG+TGG | 0.666072 | tig0023889:+65222 | None:intergenic |
| GAAAATGCGACACTTTCGGA+AGG | 0.668630 | tig0023889:+68288 | None:intergenic |
| GCGGTGGAAAACGGAGACGG+AGG | 0.678617 | tig0023889:+68101 | None:intergenic |
| AGTCATTGGTGGACGCTCGG+GGG | 0.687506 | tig0023889:+66620 | None:intergenic |
| CGGTAGCAGCCAAAGGACGG+CGG | 0.692355 | tig0023889:+68082 | None:intergenic |
| GCACTGAAGCTCTTATCATG+GGG | 0.692529 | tig0023889:-67469 | Msa1412380:CDS |
| GTGAATTGCAGTTGATGGTG+GGG | 0.701928 | tig0023889:-65251 | Msa1412380:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAGTAAAAAAATAAAATAG+TGG | + | tig0023889:65541-65560 | None:intergenic | 15.0% |
| !!! | AATATTTTCAATATTATTCC+TGG | + | tig0023889:66328-66347 | None:intergenic | 15.0% |
| !!! | AACTTTTATTGTAAAGAAAT+GGG | + | tig0023889:66467-66486 | None:intergenic | 15.0% |
| !!! | AAACTTTTATTGTAAAGAAA+TGG | + | tig0023889:66468-66487 | None:intergenic | 15.0% |
| !!! | TTTCTTTACAATAAAAGTTT+TGG | - | tig0023889:66468-66487 | Msa1412380:intron | 15.0% |
| !!! | TGTTTTTAATTGCATTTTAA+CGG | - | tig0023889:66867-66886 | Msa1412380:intron | 15.0% |
| !! | ATTCACATGAATTTATAAAA+AGG | + | tig0023889:67997-68016 | None:intergenic | 15.0% |
| !!! | TTTTCTTGTTCATTCAATTA+TGG | - | tig0023889:65662-65681 | Msa1412380:intron | 20.0% |
| !!! | TTTTTTCTAAAGTTCTTTTG+AGG | - | tig0023889:66373-66392 | Msa1412380:intron | 20.0% |
| !!! | AATTTTGCCATTATTATGTT+TGG | - | tig0023889:66401-66420 | Msa1412380:intron | 20.0% |
| !!! | ATTTTGCCATTATTATGTTT+GGG | - | tig0023889:66402-66421 | Msa1412380:intron | 20.0% |
| !!! | ACTTTTATTGTAAAGAAATG+GGG | + | tig0023889:66466-66485 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAATGAGAAAAA+TGG | + | tig0023889:66731-66750 | None:intergenic | 20.0% |
| !! | AAAATGCAATTAAAAACATC+TGG | + | tig0023889:66865-66884 | None:intergenic | 20.0% |
| !! | GTTACAAAATATTGTCTAAT+TGG | + | tig0023889:67009-67028 | None:intergenic | 20.0% |
| !!! | AGTTCTTGATGAAATTTTAT+AGG | - | tig0023889:67030-67049 | Msa1412380:intron | 20.0% |
| !!! | ACTATTTTATTTAAATCCCT+AGG | - | tig0023889:67139-67158 | Msa1412380:intron | 20.0% |
| !!! | TACCTATTTTAATTATGTAC+TGG | - | tig0023889:67200-67219 | Msa1412380:intron | 20.0% |
| !! | ATCCAGTACATAATTAAAAT+AGG | + | tig0023889:67205-67224 | None:intergenic | 20.0% |
| !! | TTTAATTATGTACTGGATTA+TGG | - | tig0023889:67207-67226 | Msa1412380:intron | 20.0% |
| !! | TATCTTTAATCTTAAGTCAA+GGG | + | tig0023889:67312-67331 | None:intergenic | 20.0% |
| !! | TTGACTTAAGATTAAAGATA+GGG | - | tig0023889:67312-67331 | Msa1412380:intron | 20.0% |
| !! | AACAAAAATCATCTAAACAA+TGG | + | tig0023889:67709-67728 | None:intergenic | 20.0% |
| !! | GAAAATATATAAATTAGCAG+TGG | + | tig0023889:67854-67873 | None:intergenic | 20.0% |
| !! | AGTGACAGAAAAAATAATAT+GGG | + | tig0023889:67876-67895 | None:intergenic | 20.0% |
| !! | AAGTGACAGAAAAAATAATA+TGG | + | tig0023889:67877-67896 | None:intergenic | 20.0% |
| !! | ATCAAAAGTTTCATAAGAAA+AGG | + | tig0023889:67933-67952 | None:intergenic | 20.0% |
| !! | GATTCTTATCAAATATTCTA+TGG | - | tig0023889:67950-67969 | Msa1412380:intron | 20.0% |
| !! | AATTTCTAAACATGTTGTTA+AGG | - | tig0023889:68149-68168 | Msa1412380:CDS | 20.0% |
| ! | GACAAAACAACATTGAATAT+GGG | + | tig0023889:65244-65263 | None:intergenic | 25.0% |
| ! | AGACAAAACAACATTGAATA+TGG | + | tig0023889:65245-65264 | None:intergenic | 25.0% |
| !!! | AATGTTGTTTTGTCTCATTT+TGG | - | tig0023889:65250-65269 | Msa1412380:intron | 25.0% |
| !!! | TGTTGATTGTTGATTTTGTT+TGG | - | tig0023889:65686-65705 | Msa1412380:intron | 25.0% |
| ! | ACAAACACAAATTACACTTT+AGG | + | tig0023889:65865-65884 | None:intergenic | 25.0% |
| !! | AAGTGTAATTTGTGTTTGTT+TGG | - | tig0023889:65866-65885 | Msa1412380:intron | 25.0% |
| !!! | GTTTGGCTTTAGAATATAAA+TGG | - | tig0023889:65883-65902 | Msa1412380:intron | 25.0% |
| ! | ACCTTGTTAATATTGTTGAT+GGG | - | tig0023889:65909-65928 | Msa1412380:intron | 25.0% |
| ! | TTAATTAGTTGTTACGACTT+GGG | + | tig0023889:66281-66300 | None:intergenic | 25.0% |
| ! | TTTAATTAGTTGTTACGACT+TGG | + | tig0023889:66282-66301 | None:intergenic | 25.0% |
| ! | AAGTCGTAACAACTAATTAA+AGG | - | tig0023889:66281-66300 | Msa1412380:intron | 25.0% |
| ! | GTTGATCGAAAATTAAAATC+TGG | - | tig0023889:66695-66714 | Msa1412380:CDS | 25.0% |
| ! | ACAAAAACTATATGACTGTA+TGG | - | tig0023889:66789-66808 | Msa1412380:intron | 25.0% |
| !! | TTTTTGTCTCCTTTCTTTTA+TGG | - | tig0023889:66905-66924 | Msa1412380:intron | 25.0% |
| !! | GTGACTAACATAATTTGTAT+TGG | - | tig0023889:67052-67071 | Msa1412380:intron | 25.0% |
| !! | CTTCAAGCACATATTTTATT+TGG | + | tig0023889:67104-67123 | None:intergenic | 25.0% |
| ! | CTATCTTTAATCTTAAGTCA+AGG | + | tig0023889:67313-67332 | None:intergenic | 25.0% |
| ! | CTTGACTTAAGATTAAAGAT+AGG | - | tig0023889:67311-67330 | Msa1412380:intron | 25.0% |
| ! | TGACTTAAGATTAAAGATAG+GGG | - | tig0023889:67313-67332 | Msa1412380:intron | 25.0% |
| !!! | AACTGTCTTTTTCACATTTT+TGG | - | tig0023889:67669-67688 | Msa1412380:CDS | 25.0% |
| ! | GGACAACTAATAAGAATAAA+GGG | + | tig0023889:67757-67776 | None:intergenic | 25.0% |
| ! | CTTTATTCTTATTAGTTGTC+CGG | - | tig0023889:67756-67775 | Msa1412380:intron | 25.0% |
| ! | ACAAAATAAAACTCAAACAC+CGG | + | tig0023889:67778-67797 | None:intergenic | 25.0% |
| !!! | GTGTTTGAGTTTTATTTTGT+TGG | - | tig0023889:67778-67797 | Msa1412380:intron | 25.0% |
| ! | AACAACATGTTTAGAAATTG+AGG | + | tig0023889:68148-68167 | None:intergenic | 25.0% |
| !! | AATGTTTTTGTGCAGGAAAA+TGG | + | tig0023889:64944-64963 | None:intergenic | 30.0% |
| TAACAAACCCTAACAATTCT+TGG | - | tig0023889:65092-65111 | Msa1412380:exon | 30.0% | |
| AACAACATTGAATATGGGAA+CGG | + | tig0023889:65239-65258 | None:intergenic | 30.0% | |
| CATGATATTGATACTCACTT+GGG | + | tig0023889:65629-65648 | None:intergenic | 30.0% | |
| ACATGATATTGATACTCACT+TGG | + | tig0023889:65630-65649 | None:intergenic | 30.0% | |
| AGCTATAAAATCGTTTGCAA+TGG | - | tig0023889:65731-65750 | Msa1412380:intron | 30.0% | |
| AAACTCAAGTTTACTACTAC+TGG | - | tig0023889:65771-65790 | Msa1412380:intron | 30.0% | |
| GACCTTGTTAATATTGTTGA+TGG | - | tig0023889:65908-65927 | Msa1412380:intron | 30.0% | |
| TCCCATCAACAATATTAACA+AGG | + | tig0023889:65913-65932 | None:intergenic | 30.0% | |
| AAATGACAGAAATTCGTCTA+TGG | + | tig0023889:66063-66082 | None:intergenic | 30.0% | |
| ATGACTGCTAGAATAATACT+TGG | - | tig0023889:66230-66249 | Msa1412380:intron | 30.0% | |
| !! | AATAATACTTGGCTTGTGTA+AGG | - | tig0023889:66241-66260 | Msa1412380:intron | 30.0% |
| ATTGTAAAGAAATGGGGTAA+GGG | + | tig0023889:66460-66479 | None:intergenic | 30.0% | |
| TATTGTAAAGAAATGGGGTA+AGG | + | tig0023889:66461-66480 | None:intergenic | 30.0% | |
| ! | CATTAAGCCTACTCTATTTT+GGG | - | tig0023889:66506-66525 | Msa1412380:intron | 30.0% |
| ! | ATTAAGCCTACTCTATTTTG+GGG | - | tig0023889:66507-66526 | Msa1412380:intron | 30.0% |
| ! | CTTGAAAAGTGTAATTCCAT+TGG | + | tig0023889:66570-66589 | None:intergenic | 30.0% |
| ! | CAATGGAATTACACTTTTCA+AGG | - | tig0023889:66568-66587 | Msa1412380:CDS | 30.0% |
| !! | GATGAAATTGTGAAAGTACT+TGG | - | tig0023889:66596-66615 | Msa1412380:CDS | 30.0% |
| AGCATCAATCCATAAAAGAA+AGG | + | tig0023889:66917-66936 | None:intergenic | 30.0% | |
| !! | TCTTTTATGGATTGATGCTA+TGG | - | tig0023889:66918-66937 | Msa1412380:intron | 30.0% |
| ! | GATGCTATGGTTTGTATAAA+TGG | - | tig0023889:66931-66950 | Msa1412380:intron | 30.0% |
| AAATGGAACTGAAAAATCGT+AGG | - | tig0023889:66948-66967 | Msa1412380:intron | 30.0% | |
| TGTATTGGAATTCATGTTTC+TGG | - | tig0023889:67067-67086 | Msa1412380:intron | 30.0% | |
| GTATTGGAATTCATGTTTCT+GGG | - | tig0023889:67068-67087 | Msa1412380:intron | 30.0% | |
| ATATGTGCTTGAAGTTGAAA+AGG | - | tig0023889:67110-67129 | Msa1412380:intron | 30.0% | |
| ! | TAACTAGAAATCTAGAGTCA+TGG | + | tig0023889:67182-67201 | None:intergenic | 30.0% |
| AAAGCTTCAAACAAAAGGTT+GGG | - | tig0023889:67262-67281 | Msa1412380:intron | 30.0% | |
| ! | CATTCAGGTTTATGATGATT+TGG | - | tig0023889:67402-67421 | Msa1412380:intron | 30.0% |
| !! | TTAGCTTTTGCAAAGTCATT+TGG | - | tig0023889:67567-67586 | Msa1412380:intron | 30.0% |
| AAATCATCTAAACAATGGCA+GGG | + | tig0023889:67704-67723 | None:intergenic | 30.0% | |
| AAAATCATCTAAACAATGGC+AGG | + | tig0023889:67705-67724 | None:intergenic | 30.0% | |
| CGGACAACTAATAAGAATAA+AGG | + | tig0023889:67758-67777 | None:intergenic | 30.0% | |
| ! | TATAAATACGAATGCCACTT+TGG | - | tig0023889:67823-67842 | Msa1412380:intron | 30.0% |
| !! | ATAAATACGAATGCCACTTT+GGG | - | tig0023889:67824-67843 | Msa1412380:intron | 30.0% |
| ATGTTGTTAAGGATGAATGA+TGG | - | tig0023889:68160-68179 | Msa1412380:CDS | 30.0% | |
| TGTACAATAGATAGATCAAC+AGG | - | tig0023889:68327-68346 | Msa1412380:five_prime_UTR | 30.0% | |
| TTTGTGCAGGAAAATGGATA+CGG | + | tig0023889:64938-64957 | None:intergenic | 35.0% | |
| !! | TGGATAGAATGTTTTTGTGC+AGG | + | tig0023889:64951-64970 | None:intergenic | 35.0% |
| ! | ATTTTCGTCTTGGAAGGAAA+TGG | - | tig0023889:64991-65010 | Msa1412380:intron | 35.0% |
| TCTGAATCAAACGAAGAGAA+GGG | + | tig0023889:65063-65082 | None:intergenic | 35.0% | |
| TTCTGAATCAAACGAAGAGA+AGG | + | tig0023889:65064-65083 | None:intergenic | 35.0% | |
| TTCCTAGCCAAGAATTGTTA+GGG | + | tig0023889:65102-65121 | None:intergenic | 35.0% | |
| TTGGCTAGGAACCAAAATTA+GGG | - | tig0023889:65111-65130 | Msa1412380:CDS | 35.0% | |
| ! | GCAATGTTGAACCCTAATTT+TGG | + | tig0023889:65125-65144 | None:intergenic | 35.0% |
| ! | TTTGTTTGGTGAAAGCAAGA+TGG | - | tig0023889:65700-65719 | Msa1412380:intron | 35.0% |
| TTTCACCTGAACTTACTTTC+TGG | - | tig0023889:66196-66215 | Msa1412380:intron | 35.0% | |
| TTGCCATTATTATGTTTGGG+AGG | - | tig0023889:66405-66424 | Msa1412380:intron | 35.0% | |
| AAGCCTCCCAAACATAATAA+TGG | + | tig0023889:66411-66430 | None:intergenic | 35.0% | |
| ! | GCATTAAGCCTACTCTATTT+TGG | - | tig0023889:66505-66524 | Msa1412380:intron | 35.0% |
| !! | TTAAGCCTACTCTATTTTGG+GGG | - | tig0023889:66508-66527 | Msa1412380:intron | 35.0% |
| TATCATCAATTGCCAAAGAG+TGG | - | tig0023889:66756-66775 | Msa1412380:intron | 35.0% | |
| TAATCAACGTTTGAATGCCA+AGG | + | tig0023889:66975-66994 | None:intergenic | 35.0% | |
| TATTTAAATCCCTAGGTCAG+AGG | - | tig0023889:67146-67165 | Msa1412380:intron | 35.0% | |
| TAATAAAAGCCTCTGACCTA+GGG | + | tig0023889:67158-67177 | None:intergenic | 35.0% | |
| TTAATAAAAGCCTCTGACCT+AGG | + | tig0023889:67159-67178 | None:intergenic | 35.0% | |
| CAAAGCTTCAAACAAAAGGT+TGG | - | tig0023889:67261-67280 | Msa1412380:intron | 35.0% | |
| TGTCAAATATTCCTGCATTC+AGG | - | tig0023889:67387-67406 | Msa1412380:intron | 35.0% | |
| ATCATCATAAACCTGAATGC+AGG | + | tig0023889:67401-67420 | None:intergenic | 35.0% | |
| ! | GGCTTTATCTTGGAATTCAT+AGG | + | tig0023889:67501-67520 | None:intergenic | 35.0% |
| AATTCCAAGATAAAGCCCTT+GGG | - | tig0023889:67504-67523 | Msa1412380:CDS | 35.0% | |
| CTAGAATGATCTTGTGACAA+AGG | - | tig0023889:67731-67750 | Msa1412380:intron | 35.0% | |
| !! | TAAATACGAATGCCACTTTG+GGG | - | tig0023889:67825-67844 | Msa1412380:intron | 35.0% |
| ! | TCTGTCACTTATTTGCTGAA+TGG | - | tig0023889:67887-67906 | Msa1412380:intron | 35.0% |
| TTCATGTGAATTGCAGTTGA+TGG | - | tig0023889:68006-68025 | Msa1412380:intron | 35.0% | |
| CACATATGATTCTTGGCATT+TGG | - | tig0023889:68046-68065 | Msa1412380:intron | 35.0% | |
| !! | CTTTTTCGTCATTAATGCCA+AGG | + | tig0023889:68110-68129 | None:intergenic | 35.0% |
| AGACGAAAATGCGACACTTT+CGG | + | tig0023889:64981-65000 | None:intergenic | 40.0% | |
| !!! | AAAGTGTCGCATTTTCGTCT+TGG | - | tig0023889:64981-65000 | Msa1412380:three_prime_UTR | 40.0% |
| AACCCTAACAATTCTTGGCT+AGG | - | tig0023889:65097-65116 | Msa1412380:exon | 40.0% | |
| GTTCCTAGCCAAGAATTGTT+AGG | + | tig0023889:65103-65122 | None:intergenic | 40.0% | |
| CTTGGCTAGGAACCAAAATT+AGG | - | tig0023889:65110-65129 | Msa1412380:CDS | 40.0% | |
| ATACTCACTTGGGAATTTCC+TGG | + | tig0023889:65619-65638 | None:intergenic | 40.0% | |
| TATCATGGGGATTCTTATCG+AGG | - | tig0023889:65806-65825 | Msa1412380:intron | 40.0% | |
| ATCATGGGGATTCTTATCGA+GGG | - | tig0023889:65807-65826 | Msa1412380:intron | 40.0% | |
| GAACTTAGCTCACTGCAATT+AGG | - | tig0023889:65931-65950 | Msa1412380:intron | 40.0% | |
| !! | GTTTCCATGTTCTAGAAGCT+AGG | - | tig0023889:66030-66049 | Msa1412380:intron | 40.0% |
| CTCTACCAGAAAGTAAGTTC+AGG | + | tig0023889:66204-66223 | None:intergenic | 40.0% | |
| ! | CAGAGACTTGATTTTTCACC+AGG | - | tig0023889:66307-66326 | Msa1412380:intron | 40.0% |
| TAGAACCCCCAAAATAGAGT+AGG | + | tig0023889:66516-66535 | None:intergenic | 40.0% | |
| !! | TACTCTATTTTGGGGGTTCT+AGG | - | tig0023889:66515-66534 | Msa1412380:intron | 40.0% |
| TTCTGAGCATCATCAGTCAT+TGG | + | tig0023889:66659-66678 | None:intergenic | 40.0% | |
| ! | AATGACTGATGATGCTCAGA+AGG | - | tig0023889:66658-66677 | Msa1412380:CDS | 40.0% |
| !! | GTAAGAAGCATTCCACTCTT+TGG | + | tig0023889:66771-66790 | None:intergenic | 40.0% |
| ACTGAAAAATCGTAGGACCT+TGG | - | tig0023889:66955-66974 | Msa1412380:intron | 40.0% | |
| TGCTTGAAGTTGAAAAGGAG+TGG | - | tig0023889:67115-67134 | Msa1412380:intron | 40.0% | |
| CGTGCAAAGCTTCAAACAAA+AGG | - | tig0023889:67257-67276 | Msa1412380:intron | 40.0% | |
| GAATTCCAAGATAAAGCCCT+TGG | - | tig0023889:67503-67522 | Msa1412380:CDS | 40.0% | |
| GAAAATTCACAGTGACTCAC+CGG | + | tig0023889:67533-67552 | None:intergenic | 40.0% | |
| !!! | CATTTGGCTTGCTGCAATTT+TGG | - | tig0023889:67583-67602 | Msa1412380:intron | 40.0% |
| TCATGGCATGTTTGGTATCA+CGG | + | tig0023889:67617-67636 | None:intergenic | 40.0% | |
| ! | CTTATTTGCTGAATGGAGTG+TGG | - | tig0023889:67894-67913 | Msa1412380:intron | 40.0% |
| !! | ATGTGAATTGCAGTTGATGG+TGG | - | tig0023889:68009-68028 | Msa1412380:intron | 40.0% |
| !! | TGTGAATTGCAGTTGATGGT+GGG | - | tig0023889:68010-68029 | Msa1412380:intron | 40.0% |
| ACCACAGCACATATGATTCT+TGG | - | tig0023889:68039-68058 | Msa1412380:intron | 40.0% | |
| TGGATAGTATCTTGTGACCT+GGG | + | tig0023889:68086-68105 | None:intergenic | 40.0% | |
| TTGGATAGTATCTTGTGACC+TGG | + | tig0023889:68087-68106 | None:intergenic | 40.0% | |
| CACAAGATACTATCCAACCT+TGG | - | tig0023889:68090-68109 | Msa1412380:CDS | 40.0% | |
| TTCGTCATTAATGCCAAGGT+TGG | + | tig0023889:68106-68125 | None:intergenic | 40.0% | |
| CGAAAAAGCTAAAGAGCTAG+AGG | - | tig0023889:68122-68141 | Msa1412380:CDS | 40.0% | |
| GAAAATGCGACACTTTCGGA+AGG | + | tig0023889:64977-64996 | None:intergenic | 45.0% | |
| ! | TGTCGCATTTTCGTCTTGGA+AGG | - | tig0023889:64985-65004 | Msa1412380:intron | 45.0% |
| AACGCAGTGACAAGGTTGAA+GGG | + | tig0023889:65036-65055 | None:intergenic | 45.0% | |
| ! | TGGCACTGAAGCTCTTATCA+TGG | - | tig0023889:65791-65810 | Msa1412380:intron | 45.0% |
| ! | GGCACTGAAGCTCTTATCAT+GGG | - | tig0023889:65792-65811 | Msa1412380:intron | 45.0% |
| GCACTGAAGCTCTTATCATG+GGG | - | tig0023889:65793-65812 | Msa1412380:intron | 45.0% | |
| !! | TCAGCCTAGCTTCTAGAACA+TGG | + | tig0023889:66037-66056 | None:intergenic | 45.0% |
| ! | AGTTGTTACGACTTGGGAGA+GGG | + | tig0023889:66275-66294 | None:intergenic | 45.0% |
| ! | TAGTTGTTACGACTTGGGAG+AGG | + | tig0023889:66276-66295 | None:intergenic | 45.0% |
| ! | AGCAAGTTTTTGCGAGCCAA+TGG | - | tig0023889:66551-66570 | Msa1412380:intron | 45.0% |
| TGAGCATCATCAGTCATTGG+TGG | + | tig0023889:66656-66675 | None:intergenic | 45.0% | |
| TCGATCAACAGCCCAATCAA+GGG | + | tig0023889:66684-66703 | None:intergenic | 45.0% | |
| TTCGATCAACAGCCCAATCA+AGG | + | tig0023889:66685-66704 | None:intergenic | 45.0% | |
| GATTAAAGATAGGGGCCAGT+CGG | - | tig0023889:67321-67340 | Msa1412380:intron | 45.0% | |
| ATTAAAGATAGGGGCCAGTC+GGG | - | tig0023889:67322-67341 | Msa1412380:intron | 45.0% | |
| !!! | TGGTTCTGAGGCTTTTCTTC+AGG | - | tig0023889:67354-67373 | Msa1412380:intron | 45.0% |
| ! | GAAACCCAAGGGCTTTATCT+TGG | + | tig0023889:67511-67530 | None:intergenic | 45.0% |
| AGATAAAGCCCTTGGGTTTC+CGG | - | tig0023889:67511-67530 | Msa1412380:CDS | 45.0% | |
| CTCTCTTCTCATGGCATGTT+TGG | + | tig0023889:67625-67644 | None:intergenic | 45.0% | |
| !! | GTGAATTGCAGTTGATGGTG+GGG | - | tig0023889:68011-68030 | Msa1412380:intron | 45.0% |
| GCCAAGAATCATATGTGCTG+TGG | + | tig0023889:68043-68062 | None:intergenic | 45.0% | |
| TCTTGGCATTTGGTCTGATG+TGG | - | tig0023889:68056-68075 | Msa1412380:intron | 45.0% | |
| GGATAGTATCTTGTGACCTG+GGG | + | tig0023889:68085-68104 | None:intergenic | 45.0% | |
| GCGACACTTTCGGAAGGAAT+TGG | + | tig0023889:64971-64990 | None:intergenic | 50.0% | |
| GTGACAAGGTTGAAGGGAGA+TGG | + | tig0023889:65030-65049 | None:intergenic | 50.0% | |
| GAACGCAGTGACAAGGTTGA+AGG | + | tig0023889:65037-65056 | None:intergenic | 50.0% | |
| AAACGGTAGCAGCCAAAGGA+CGG | + | tig0023889:65186-65205 | None:intergenic | 50.0% | |
| AAGGAAACGGTAGCAGCCAA+AGG | + | tig0023889:65190-65209 | None:intergenic | 50.0% | |
| ACGGAAGAAGCTTACGAGGT+GGG | + | tig0023889:65220-65239 | None:intergenic | 50.0% | |
| AACGGAAGAAGCTTACGAGG+TGG | + | tig0023889:65221-65240 | None:intergenic | 50.0% | |
| AATCCTGAGCGTGTTTCTCC+AGG | - | tig0023889:65593-65612 | Msa1412380:intron | 50.0% | |
| ATGGGGTAAGGGTCACAACA+CGG | + | tig0023889:66449-66468 | None:intergenic | 50.0% | |
| !! | GGGGGTTCTAGGTACTAATC+TGG | - | tig0023889:66526-66545 | Msa1412380:intron | 50.0% |
| ! | ATCAGTCATTGGTGGACGCT+CGG | + | tig0023889:66648-66667 | None:intergenic | 50.0% |
| ATGCTCAGAAGGCCCTTGAT+TGG | - | tig0023889:66669-66688 | Msa1412380:CDS | 50.0% | |
| TGCTCAGAAGGCCCTTGATT+GGG | - | tig0023889:66670-66689 | Msa1412380:CDS | 50.0% | |
| AACCAAAACACAAGCCCGAC+TGG | + | tig0023889:67339-67358 | None:intergenic | 50.0% | |
| !!! | GGGCTTGTGTTTTGGTTCTG+AGG | - | tig0023889:67342-67361 | Msa1412380:intron | 50.0% |
| TGGCATGTTTGGTATCACGG+TGG | + | tig0023889:67614-67633 | None:intergenic | 50.0% | |
| ACATGCCATGAGAAGAGAGC+AGG | - | tig0023889:67626-67645 | Msa1412380:intron | 50.0% | |
| CATGCCATGAGAAGAGAGCA+GGG | - | tig0023889:67627-67646 | Msa1412380:intron | 50.0% | |
| ATGCCATGAGAAGAGAGCAG+GGG | - | tig0023889:67628-67647 | Msa1412380:intron | 50.0% | |
| AGGGTTCGAACGCAGTGACA+AGG | + | tig0023889:65044-65063 | None:intergenic | 55.0% | |
| CAAAGGACGGCGGTGGAAAA+CGG | + | tig0023889:65173-65192 | None:intergenic | 55.0% | |
| GGTGGGGAGACTGAAGGAAA+CGG | + | tig0023889:65203-65222 | None:intergenic | 55.0% | |
| TTACGAGGTGGGGAGACTGA+AGG | + | tig0023889:65209-65228 | None:intergenic | 55.0% | |
| CGGAAGAAGCTTACGAGGTG+GGG | + | tig0023889:65219-65238 | None:intergenic | 55.0% | |
| GGGAACGGAAGAAGCTTACG+AGG | + | tig0023889:65224-65243 | None:intergenic | 55.0% | |
| CACTTGGGAATTTCCTGGCC+TGG | + | tig0023889:65614-65633 | None:intergenic | 55.0% | |
| TGGGGTAAGGGTCACAACAC+GGG | + | tig0023889:66448-66467 | None:intergenic | 55.0% | |
| ! | TCAGTCATTGGTGGACGCTC+GGG | + | tig0023889:66647-66666 | None:intergenic | 55.0% |
| GTGACTCACCGGAAACCCAA+GGG | + | tig0023889:67522-67541 | None:intergenic | 55.0% | |
| AGTGACTCACCGGAAACCCA+AGG | + | tig0023889:67523-67542 | None:intergenic | 55.0% | |
| CAACCCCTGCTCTCTTCTCA+TGG | + | tig0023889:67634-67653 | None:intergenic | 55.0% | |
| TAGCAGTGGCTACCCCAAAG+TGG | + | tig0023889:67840-67859 | None:intergenic | 55.0% | |
| TGGTCTGATGTGGATTCCCC+AGG | - | tig0023889:68066-68085 | Msa1412380:CDS | 55.0% | |
| ACGGCGGTGGAAAACGGAGA+CGG | + | tig0023889:65167-65186 | None:intergenic | 60.0% | |
| ! | CGTTTTCCACCGCCGTCCTT+TGG | - | tig0023889:65171-65190 | Msa1412380:CDS | 60.0% |
| TGGCCTGGAGAAACACGCTC+AGG | + | tig0023889:65599-65618 | None:intergenic | 60.0% | |
| TGAGCGTGTTTCTCCAGGCC+AGG | - | tig0023889:65598-65617 | Msa1412380:intron | 60.0% | |
| ! | AGTCATTGGTGGACGCTCGG+GGG | + | tig0023889:66645-66664 | None:intergenic | 60.0% |
| ! | CAGTCATTGGTGGACGCTCG+GGG | + | tig0023889:66646-66665 | None:intergenic | 60.0% |
| ! | GGCCAGTCGGGCTTGTGTTT+TGG | - | tig0023889:67334-67353 | Msa1412380:intron | 60.0% |
| GCGGTGGAAAACGGAGACGG+AGG | + | tig0023889:65164-65183 | None:intergenic | 65.0% | |
| TAGCAGCCAAAGGACGGCGG+TGG | + | tig0023889:65180-65199 | None:intergenic | 65.0% | |
| CGGTAGCAGCCAAAGGACGG+CGG | + | tig0023889:65183-65202 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023889 | gene | 64934 | 68350 | 64934 | ID=Msa1412380;Name=Msa1412380 |
| tig0023889 | mRNA | 64934 | 68350 | 64934 | ID=Msa1412380-mRNA-1;Parent=Msa1412380;Name=Msa1412380-mRNA-1;_AED=0.03;_eAED=0.03;_QI=76|1|1|1|0.8|0.66|6|101|233 |
| tig0023889 | exon | 64934 | 65001 | 64934 | ID=Msa1412380-mRNA-1:exon:20567;Parent=Msa1412380-mRNA-1 |
| tig0023889 | exon | 65072 | 65262 | 65072 | ID=Msa1412380-mRNA-1:exon:20566;Parent=Msa1412380-mRNA-1 |
| tig0023889 | exon | 66568 | 66747 | 66568 | ID=Msa1412380-mRNA-1:exon:20565;Parent=Msa1412380-mRNA-1 |
| tig0023889 | exon | 67456 | 67565 | 67456 | ID=Msa1412380-mRNA-1:exon:20564;Parent=Msa1412380-mRNA-1 |
| tig0023889 | exon | 67654 | 67692 | 67654 | ID=Msa1412380-mRNA-1:exon:20563;Parent=Msa1412380-mRNA-1 |
| tig0023889 | exon | 68060 | 68350 | 68060 | ID=Msa1412380-mRNA-1:exon:20562;Parent=Msa1412380-mRNA-1 |
| tig0023889 | five_prime_UTR | 68275 | 68350 | 68275 | ID=Msa1412380-mRNA-1:five_prime_utr;Parent=Msa1412380-mRNA-1 |
| tig0023889 | CDS | 68060 | 68274 | 68060 | ID=Msa1412380-mRNA-1:cds;Parent=Msa1412380-mRNA-1 |
| tig0023889 | CDS | 67654 | 67692 | 67654 | ID=Msa1412380-mRNA-1:cds;Parent=Msa1412380-mRNA-1 |
| tig0023889 | CDS | 67456 | 67565 | 67456 | ID=Msa1412380-mRNA-1:cds;Parent=Msa1412380-mRNA-1 |
| tig0023889 | CDS | 66568 | 66747 | 66568 | ID=Msa1412380-mRNA-1:cds;Parent=Msa1412380-mRNA-1 |
| tig0023889 | CDS | 65105 | 65262 | 65105 | ID=Msa1412380-mRNA-1:cds;Parent=Msa1412380-mRNA-1 |
| tig0023889 | three_prime_UTR | 65072 | 65104 | 65072 | ID=Msa1412380-mRNA-1:three_prime_utr;Parent=Msa1412380-mRNA-1 |
| tig0023889 | three_prime_UTR | 64934 | 65001 | 64934 | ID=Msa1412380-mRNA-1:three_prime_utr;Parent=Msa1412380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
