AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0096970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096970 MtrunA17_Chr1g0153161 95.477 398 18 0 85 482 15 412 0.0 744
Msa0096970 MtrunA17_Chr8g0372101 37.945 253 116 7 87 300 18 268 6.48e-31 125
Msa0096970 MtrunA17_Chr8g0372101 46.000 100 51 2 377 476 461 557 1.09e-17 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096970 AT1G19860.2 42.424 429 173 15 91 479 21 415 3.28e-84 266
Msa0096970 AT1G19860.1 42.424 429 173 15 91 479 19 413 4.50e-84 265
Msa0096970 AT5G66270.1 26.077 441 217 15 91 456 21 427 9.89e-25 107
Msa0096970 AT3G51180.1 32.489 237 109 9 91 295 23 240 1.29e-17 85.9

Find 138 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTTCAACAGGCGTAAT+TGG 0.151616 1_3:-2727247 None:intergenic
TCAGAAACTGGCGGCAAATT+AGG 0.194412 1_3:-2728159 None:intergenic
ATTTACTTTCATGTTAAAAT+TGG 0.202521 1_3:+2728400 Msa0096970:three_prime_UTR
GCTGCATCTGTTGCTTTAAC+TGG 0.213192 1_3:+2727355 Msa0096970:CDS
CATGTTAAAATTGGCATAAA+TGG 0.216173 1_3:+2728409 Msa0096970:three_prime_UTR
CTGCAGCTGCCTCTCTTTCT+TGG 0.229038 1_3:+2728229 Msa0096970:three_prime_UTR
AACATGAAAGTAAATTAAAA+TGG 0.238916 1_3:-2728392 None:intergenic
AGAATATTATTGAGTAATTC+AGG 0.252544 1_3:-2727415 None:intergenic
TTGCTGGTTCTGGCGATTAC+TGG 0.255064 1_3:-2727791 None:intergenic
GCAATAGCTGGACTGATTTC+AGG 0.255929 1_3:-2727667 None:intergenic
TACATTATCTCCTGGTATAT+TGG 0.266652 1_3:+2727285 Msa0096970:CDS
TCGTCAACATCCACTGAAAT+AGG 0.270410 1_3:-2727190 None:intergenic
TTGATAATGGTTGCTGGTTC+TGG 0.279964 1_3:-2727801 None:intergenic
AGTGGTCTCAACTTGATTAA+AGG 0.289882 1_3:-2727548 None:intergenic
GACGATTCCCATTACATTGA+TGG 0.304640 1_3:+2727208 Msa0096970:CDS
GGCCTCCCCATCAAAATAAA+TGG 0.309355 1_3:-2728065 None:intergenic
TAGTTCAAAGAGAATGAAAA+TGG 0.338707 1_3:+2727990 Msa0096970:CDS
CCAGCTAATAACTGGTATTT+CGG 0.350750 1_3:-2726577 None:intergenic
TGACGAGGGATTACCTTGTT+GGG 0.359371 1_3:-2727959 None:intergenic
TTTGTTGAAGGGACCTCAAC+AGG 0.365719 1_3:-2727697 None:intergenic
ATTCTTTATGATTGTAACTA+AGG 0.365941 1_3:+2728254 Msa0096970:three_prime_UTR
GTGGTCTCAACTTGATTAAA+GGG 0.370543 1_3:-2727547 None:intergenic
CTGACGAGGGATTACCTTGT+TGG 0.373906 1_3:-2727960 None:intergenic
TCAACTTGATTAAAGGGATT+AGG 0.374101 1_3:-2727541 None:intergenic
ACCAACTTCTCAATCACTTC+CGG 0.375302 1_3:-2727445 None:intergenic
CAGAAACTGGCGGCAAATTA+GGG 0.377427 1_3:-2728158 None:intergenic
GGTCTATTACACATTTGATA+TGG 0.380526 1_3:+2728101 Msa0096970:three_prime_UTR
CATAGTTTGATAATGGTTGC+TGG 0.387584 1_3:-2727807 None:intergenic
CAACAAGGTAATCCCTCGTC+AGG 0.403842 1_3:+2727961 Msa0096970:CDS
AACATGACCATCAATGTAAT+GGG 0.405673 1_3:-2727215 None:intergenic
CAGAAAATATCACACTGATT+TGG 0.405868 1_3:-2725274 None:intergenic
GTAAAGTTGACAGAAATTCT+TGG 0.406741 1_3:+2725332 Msa0096970:CDS
AGCTCCATTCCGACATCCTC+TGG 0.406929 1_3:-2727902 None:intergenic
GGTTTAATCCAGCTAATAAC+TGG 0.414260 1_3:-2726585 None:intergenic
CATCTTCAACAGGCGTAATT+GGG 0.418349 1_3:-2727246 None:intergenic
AGGAATCTCCTTCACAAGTT+GGG 0.421056 1_3:+2726424 Msa0096970:CDS
CCGAAATACCAGTTATTAGC+TGG 0.425996 1_3:+2726577 Msa0096970:CDS
CAACATGACCATCAATGTAA+TGG 0.430043 1_3:-2727216 None:intergenic
ATAAATGTATGATCAGAAAC+TGG 0.437227 1_3:-2728171 None:intergenic
TGGCGATTACTGGAGGAGTA+TGG 0.439812 1_3:-2727781 None:intergenic
GAAAATCGAAGAGAGTTTCA+TGG 0.443092 1_3:+2723345 Msa0096970:CDS
TCCGGAAGTGATTGAGAAGT+TGG 0.446609 1_3:+2727444 Msa0096970:CDS
CCAATTACGCCTGTTGAAGA+TGG 0.451403 1_3:+2727247 Msa0096970:CDS
CCCACATCCCCATCTTCAAC+AGG 0.453414 1_3:-2727256 None:intergenic
GAGGAATCTCCTTCACAAGT+TGG 0.461742 1_3:+2726423 Msa0096970:CDS
CTCACATGGCAAGTGGTGGC+TGG 0.478796 1_3:+2726983 Msa0096970:CDS
ACAGGAGTAGCAGCAATAGC+TGG 0.488249 1_3:-2727679 None:intergenic
CAATTACGCCTGTTGAAGAT+GGG 0.490357 1_3:+2727248 Msa0096970:CDS
TTCCGAGTTAGATCTTTGTC+AGG 0.491528 1_3:+2723370 Msa0096970:CDS
CAATAATATTCTCAACAATC+CGG 0.493677 1_3:+2727426 Msa0096970:CDS
TGGCCCTCCCATGTTGGAAG+TGG 0.493940 1_3:-2725254 None:intergenic
TTCGTGGATAAATAGCTTCA+AGG 0.494743 1_3:-2727054 None:intergenic
TTGTTGCCTCAAGGAGAAGC+TGG 0.494944 1_3:+2726486 Msa0096970:CDS
TATGATTGTAACTAAGGATG+AGG 0.499183 1_3:+2728260 Msa0096970:three_prime_UTR
GAAGGGCCGATCCTCTTGTT+GGG 0.500523 1_3:+2725574 Msa0096970:CDS
ACTGTATCATAGTTTGATAA+TGG 0.503276 1_3:-2727814 None:intergenic
TCTTACATGGCTGGTGATGT+TGG 0.503583 1_3:+2728039 Msa0096970:three_prime_UTR
AGAAGGGCCGATCCTCTTGT+TGG 0.509208 1_3:+2725573 Msa0096970:CDS
ATGCAGAGTTATAGAGAGAA+GGG 0.518069 1_3:+2725557 Msa0096970:CDS
TTATCTCCTGGTATATTGGA+TGG 0.518348 1_3:+2727289 Msa0096970:CDS
CAGTTAACTGAAGTCTTACA+TGG 0.523109 1_3:+2728026 Msa0096970:exon
ATCTCAGCCACTTCCAACAT+GGG 0.525224 1_3:+2725247 Msa0096970:CDS
ACCTCCGGCTGTGTGAGTAT+AGG 0.526743 1_3:-2727605 None:intergenic
TAGCTGGATTAAACCACCTA+AGG 0.527680 1_3:+2726593 Msa0096970:CDS
GCATGAGTTCCCTCAAATCC+AGG 0.528859 1_3:-2726528 None:intergenic
AGACTCGTACTTTGGAGGAA+TGG 0.532082 1_3:-2727083 None:intergenic
AGAGAAGACTCGTACTTTGG+AGG 0.538641 1_3:-2727088 None:intergenic
CTGATTTGGCCCTCCCATGT+TGG 0.541373 1_3:-2725260 None:intergenic
GGGAGGCCTGGATGCATGCA+AGG 0.544937 1_3:+2728080 Msa0096970:three_prime_UTR
AATAGACCTTGCATGCATCC+AGG 0.546936 1_3:-2728086 None:intergenic
GACGAGGGATTACCTTGTTG+GGG 0.547183 1_3:-2727958 None:intergenic
ACAAGGATGATATCTTTGCT+TGG 0.550411 1_3:-2726467 None:intergenic
AGTTGACAGAAATTCTTGGT+TGG 0.553134 1_3:+2725336 Msa0096970:CDS
GCCTGTTGAAGATGGGGATG+TGG 0.558484 1_3:+2727255 Msa0096970:CDS
TCACACAGCCGGAGGTCAGA+TGG 0.558835 1_3:+2727612 Msa0096970:CDS
GGAGGAATGGAAGATATTCG+TGG 0.560244 1_3:-2727070 None:intergenic
TAACTGAAGTCTTACATGGC+TGG 0.560377 1_3:+2728030 Msa0096970:exon
AATGCAGAGTTATAGAGAGA+AGG 0.560735 1_3:+2725556 Msa0096970:CDS
GATCTCAGCCACTTCCAACA+TGG 0.561348 1_3:+2725246 Msa0096970:CDS
TGAAGATGGGGATGTGGGAG+CGG 0.563372 1_3:+2727261 Msa0096970:CDS
CTAATAACTGGTATTTCGGA+CGG 0.563575 1_3:-2726573 None:intergenic
GGTTAGATTATTCTTATCTG+AGG 0.564458 1_3:+2726404 Msa0096970:intron
CGTCAACTATGTCTACTCAA+TGG 0.565260 1_3:+2727635 Msa0096970:CDS
AGCTTCTCCTTGAGGCAACA+AGG 0.565922 1_3:-2726484 None:intergenic
GTATAAATACATCATCCAGC+TGG 0.566536 1_3:-2728313 None:intergenic
GGAGCGGATACATTATCTCC+TGG 0.567885 1_3:+2727277 Msa0096970:CDS
ACTTGATTAAAGGGATTAGG+AGG 0.568417 1_3:-2727538 None:intergenic
TCGTTAATTTGCCCAACAAG+AGG 0.569074 1_3:-2725585 None:intergenic
TATTGCTGCTACTCCTGTTG+AGG 0.569271 1_3:+2727684 Msa0096970:CDS
TTAATAGTTCCAGAGGATGT+CGG 0.569456 1_3:+2727893 Msa0096970:CDS
TGTCTACTCAATGGCATCGT+AGG 0.571059 1_3:+2727644 Msa0096970:CDS
GCTGGTGCTTGCAGAAGTAT+CGG 0.571164 1_3:+2725307 Msa0096970:CDS
CTGGTTCTGGCGATTACTGG+AGG 0.572380 1_3:-2727788 None:intergenic
AGTATTTGATGAGGATGTAG+TGG 0.572858 1_3:-2727566 None:intergenic
GATATTTGATCAACATCAGA+GGG 0.578943 1_3:+2727021 Msa0096970:CDS
GAATTCAACCCAACTTGTGA+AGG 0.578955 1_3:-2726432 None:intergenic
CACTGTTACGACTATGTCGA+TGG 0.580449 1_3:+2727318 Msa0096970:CDS
AGGATGATATCTTTGCTTGG+AGG 0.580593 1_3:-2726464 None:intergenic
ATATCATCCTTGTTGCCTCA+AGG 0.583248 1_3:+2726477 Msa0096970:CDS
TCTTCCTATACTCACACAGC+CGG 0.583250 1_3:+2727601 Msa0096970:CDS
TGATATATCTTATGCAAGAG+AGG 0.585763 1_3:-2723254 None:intergenic
TGAAAGTAAATTAAAATGGA+CGG 0.587246 1_3:-2728388 None:intergenic
TCGATGCAGTCCTATTTCAG+TGG 0.588300 1_3:+2727180 Msa0096970:intron
AATTTGCCCAACAAGAGGAT+CGG 0.592689 1_3:-2725580 None:intergenic
AAAGAATCACCAAGAAAGAG+AGG 0.593172 1_3:-2728238 None:intergenic
TGAACTATGCATCCCTGACG+AGG 0.599293 1_3:-2727974 None:intergenic
AAGAGCTTGATTCAGCAACA+TGG 0.600253 1_3:+2727736 Msa0096970:CDS
TCAGAACCAGCTTCTCCTTG+AGG 0.604428 1_3:-2726492 None:intergenic
AGTTCCAGAGGATGTCGGAA+TGG 0.612631 1_3:+2727898 Msa0096970:CDS
AGATTGGAGATACCACCAGC+TGG 0.612636 1_3:+2728298 Msa0096970:three_prime_UTR
ATAACTCTGCATTGAGACTG+AGG 0.613768 1_3:-2725546 None:intergenic
AGTTGACGCCATCTGACCTC+CGG 0.616959 1_3:-2727620 None:intergenic
TAAATACATCATCCAGCTGG+TGG 0.620850 1_3:-2728310 None:intergenic
TACCTGACAAAGATCTAACT+CGG 0.627396 1_3:-2723372 None:intergenic
CAGCCACTTCCAACATGGGA+GGG 0.629186 1_3:+2725251 Msa0096970:CDS
TTTGAACCATCCAATATACC+AGG 0.631062 1_3:-2727295 None:intergenic
GAACTATGCATCCCTGACGA+GGG 0.631209 1_3:-2727973 None:intergenic
TGACAAAGATCTAACTCGGA+AGG 0.633363 1_3:-2723368 None:intergenic
CCTGTTGAAGATGGGGATGT+GGG 0.634741 1_3:+2727256 Msa0096970:CDS
TTAGTGAAGAGCAGTGAACA+TGG 0.639897 1_3:+2727379 Msa0096970:CDS
GCTAGATCTCACATGGCAAG+TGG 0.640415 1_3:+2726976 Msa0096970:CDS
GATACTTCTGCAAGCACCAG+CGG 0.641670 1_3:-2725305 None:intergenic
AAATGATGCATCATGCTGAA+AGG 0.642980 1_3:-2727932 None:intergenic
TCAGCCACTTCCAACATGGG+AGG 0.643487 1_3:+2725250 Msa0096970:CDS
GCATCATTTCAGCCCCAACA+AGG 0.644422 1_3:+2727946 Msa0096970:CDS
AGATATTTGATCAACATCAG+AGG 0.644462 1_3:+2727020 Msa0096970:CDS
AGATCTCACATGGCAAGTGG+TGG 0.645516 1_3:+2726979 Msa0096970:CDS
TCCTATACTCACACAGCCGG+AGG 0.650386 1_3:+2727604 Msa0096970:CDS
AGATCGTGCTAGATCTCACA+TGG 0.650447 1_3:+2726969 Msa0096970:intron
AATTACGCCTGTTGAAGATG+GGG 0.658485 1_3:+2727249 Msa0096970:CDS
AACAAGGTAATCCCTCGTCA+GGG 0.664383 1_3:+2727962 Msa0096970:CDS
AATGTATGATCAGAAACTGG+CGG 0.667429 1_3:-2728168 None:intergenic
GCACAGTATGCACAAAACAC+CGG 0.673863 1_3:+2727490 Msa0096970:CDS
TGTGTGAGTATAGGAAGAAG+TGG 0.682691 1_3:-2727596 None:intergenic
GGTGCTTGCAGAAGTATCGG+AGG 0.700785 1_3:+2725310 Msa0096970:CDS
GCGGTGTGTGAAAATATGCG+TGG 0.706081 1_3:+2723317 Msa0096970:exon
AGCTTGATTCAGCAACATGG+AGG 0.714964 1_3:+2727739 Msa0096970:CDS
TGAGTTCCCTCAAATCCAGG+AGG 0.756506 1_3:-2726525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATATATGAAAAAATTA+GGG - chr1_3:2723464-2723483 None:intergenic 10.0%
!! AAGAAATATATGAAAAAATT+AGG - chr1_3:2723465-2723484 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAAAAAC+TGG + chr1_3:2723683-2723702 Msa0096970:intron 10.0%
!! ATTATAAACTAATTCTAATA+TGG - chr1_3:2724378-2724397 None:intergenic 10.0%
!! TTTCTTATTCAAATTATTAT+GGG - chr1_3:2725748-2725767 None:intergenic 10.0%
!! GATAATATTAATAATATATG+TGG - chr1_3:2725939-2725958 None:intergenic 10.0%
!! TTTAAAAATGAATCGATTAT+TGG - chr1_3:2723441-2723460 None:intergenic 15.0%
!!! TAATGTACTAAAAAAGTATA+CGG - chr1_3:2723916-2723935 None:intergenic 15.0%
!!! ATGTTATTTTTTTGGATTTT+TGG - chr1_3:2724819-2724838 None:intergenic 15.0%
!!! TGAAACTAATGTTATTTTTT+TGG - chr1_3:2724827-2724846 None:intergenic 15.0%
!!! AAAAAAATAACATTAGTTTC+AGG + chr1_3:2724826-2724845 Msa0096970:intron 15.0%
!! CTTTCTTATTCAAATTATTA+TGG - chr1_3:2725749-2725768 None:intergenic 15.0%
!! TAATATTTATATTTCAACGT+TGG + chr1_3:2726661-2726680 Msa0096970:intron 15.0%
!! AAAAAAAGAAATATCAAACA+AGG - chr1_3:2727116-2727135 None:intergenic 15.0%
!! AACATGAAAGTAAATTAAAA+TGG - chr1_3:2728395-2728414 None:intergenic 15.0%
!! ATTTACTTTCATGTTAAAAT+TGG + chr1_3:2728400-2728419 Msa0096970:three_prime_UTR 15.0%
!!! AGATATATCAAATACGTTTT+CGG + chr1_3:2723267-2723286 Msa0096970:five_prime_UTR 20.0%
!! ATTTAATGATGAATTACTTG+TGG + chr1_3:2723766-2723785 Msa0096970:intron 20.0%
!!! AAGAAATTGCAATTATTTTG+CGG + chr1_3:2724090-2724109 Msa0096970:intron 20.0%
!! GATTTCTTTAATTAAACTCA+CGG - chr1_3:2725082-2725101 None:intergenic 20.0%
!! TTTATGATTATTGTAGACTA+GGG - chr1_3:2725625-2725644 None:intergenic 20.0%
!!! TTTTATGATTATTGTAGACT+AGG - chr1_3:2725626-2725645 None:intergenic 20.0%
!! ATTATGGGTAATCATAATAA+AGG - chr1_3:2725733-2725752 None:intergenic 20.0%
!! TAAAATATGACAGTAAAAGA+TGG - chr1_3:2726012-2726031 None:intergenic 20.0%
!! TATAACTACAAAAATACCTT+AGG - chr1_3:2726612-2726631 None:intergenic 20.0%
!! AATATTACTGAAGATTACTA+TGG - chr1_3:2726648-2726667 None:intergenic 20.0%
!! TCATAACTCGAAAAAAAAAA+AGG + chr1_3:2726879-2726898 Msa0096970:intron 20.0%
!! AGAATATTATTGAGTAATTC+AGG - chr1_3:2727418-2727437 None:intergenic 20.0%
!! GAACTATTAAAAAAGATACA+AGG - chr1_3:2727883-2727902 None:intergenic 20.0%
!! ATTCTTTATGATTGTAACTA+AGG + chr1_3:2728254-2728273 Msa0096970:three_prime_UTR 20.0%
!! TGAAAGTAAATTAAAATGGA+CGG - chr1_3:2728391-2728410 None:intergenic 20.0%
!!! CTGTATATTCTATTGTTTTG+TGG + chr1_3:2723295-2723314 Msa0096970:five_prime_UTR 25.0%
!!! TATATTCTATTGTTTTGTGG+CGG + chr1_3:2723298-2723317 Msa0096970:five_prime_UTR 25.0%
! AATTTACATGCAAAGCTAAA+AGG - chr1_3:2723554-2723573 None:intergenic 25.0%
! TAAGGAAGTTAAGATGTATT+TGG + chr1_3:2723729-2723748 Msa0096970:intron 25.0%
! AAGGAAGTTAAGATGTATTT+GGG + chr1_3:2723730-2723749 Msa0096970:intron 25.0%
!! GTTAATTGGATTAGATTAGA+TGG + chr1_3:2724153-2724172 Msa0096970:intron 25.0%
! ATGCTGAAGATATTTATCAA+AGG - chr1_3:2724336-2724355 None:intergenic 25.0%
! TTCAAAGTAACTTCATTGAA+TGG - chr1_3:2724431-2724450 None:intergenic 25.0%
! ACTAATGTCCAATCATAAAA+AGG - chr1_3:2724477-2724496 None:intergenic 25.0%
!!! AGATTTTTAACTTTCCACAA+TGG + chr1_3:2724631-2724650 Msa0096970:intron 25.0%
! AAAACTAGTATTATCAATGG+TGG - chr1_3:2724665-2724684 None:intergenic 25.0%
! TGGAAAACTAGTATTATCAA+TGG - chr1_3:2724668-2724687 None:intergenic 25.0%
! ATCGAAAAATGCAACTAAAT+TGG - chr1_3:2724876-2724895 None:intergenic 25.0%
!! TTTGAGAATTTTTATGCTGT+TGG + chr1_3:2724897-2724916 Msa0096970:intron 25.0%
!! TACTGTTAGTAAGGATATTT+TGG + chr1_3:2725128-2725147 Msa0096970:intron 25.0%
!! TGTTCTTTTTCTGTTTCAAA+AGG + chr1_3:2725210-2725229 Msa0096970:intron 25.0%
!!! TTTTGAAAAAGCTTGCAATT+TGG + chr1_3:2725478-2725497 Msa0096970:intron 25.0%
!!! ATCTGTTTTCACTTTTAATC+AGG + chr1_3:2725509-2725528 Msa0096970:intron 25.0%
!! TTTTAATCAGGATCTTAACT+TGG + chr1_3:2725521-2725540 Msa0096970:intron 25.0%
! TTATGATTATTGTAGACTAG+GGG - chr1_3:2725624-2725643 None:intergenic 25.0%
! ATTCATACTAGATACTTAGA+AGG - chr1_3:2725679-2725698 None:intergenic 25.0%
! AGTATCTAGTATGAATCTTA+TGG + chr1_3:2725683-2725702 Msa0096970:intron 25.0%
! TATTTATTGTGCGTTCAAAA+TGG + chr1_3:2725801-2725820 Msa0096970:intron 25.0%
! CAAAATGGCTATAAATATTC+TGG + chr1_3:2725816-2725835 Msa0096970:intron 25.0%
!!! CTTTTACTGTCATATTTTAG+TGG + chr1_3:2726013-2726032 Msa0096970:intron 25.0%
!! ACAAAGAAATAAACAGGTTT+TGG - chr1_3:2726132-2726151 None:intergenic 25.0%
! GTACTTTATAATGAACATCT+GGG - chr1_3:2726334-2726353 None:intergenic 25.0%
! TGTACTTTATAATGAACATC+TGG - chr1_3:2726335-2726354 None:intergenic 25.0%
!!! CATATTATAAGAGTGCTAAA+AGG + chr1_3:2726353-2726372 Msa0096970:intron 25.0%
! ATCTAACCTATTCAACAAAA+AGG - chr1_3:2726392-2726411 None:intergenic 25.0%
! CAATAATATTCTCAACAATC+CGG + chr1_3:2727426-2727445 Msa0096970:CDS 25.0%
!!! AAAAACATTTGATGATGATC+CGG - chr1_3:2727512-2727531 None:intergenic 25.0%
!! AGTTTACATCTTTTGTTGAA+GGG - chr1_3:2727711-2727730 None:intergenic 25.0%
!! TAGTTTACATCTTTTGTTGA+AGG - chr1_3:2727712-2727731 None:intergenic 25.0%
! ACTGTATCATAGTTTGATAA+TGG - chr1_3:2727817-2727836 None:intergenic 25.0%
!!! ATCTTTTTTAATAGTTCCAG+AGG + chr1_3:2727886-2727905 Msa0096970:CDS 25.0%
! TAGTTCAAAGAGAATGAAAA+TGG + chr1_3:2727990-2728009 Msa0096970:CDS 25.0%
!! TTAGCGTTTTATATGATAGT+TGG + chr1_3:2728129-2728148 Msa0096970:three_prime_UTR 25.0%
! ATAAATGTATGATCAGAAAC+TGG - chr1_3:2728174-2728193 None:intergenic 25.0%
!!! TCTCTTTTTTTACATTCTGA+CGG + chr1_3:2728346-2728365 Msa0096970:three_prime_UTR 25.0%
! CATGTTAAAATTGGCATAAA+TGG + chr1_3:2728409-2728428 Msa0096970:three_prime_UTR 25.0%
TGATATATCTTATGCAAGAG+AGG - chr1_3:2723257-2723276 None:intergenic 30.0%
CGATTATTGGAAGTGATTAT+TGG - chr1_3:2723428-2723447 None:intergenic 30.0%
GATTAGATGATTGATGAAGT+TGG - chr1_3:2723497-2723516 None:intergenic 30.0%
! TTAATCAGGAAATTTTCCTC+TGG - chr1_3:2723521-2723540 None:intergenic 30.0%
AATTTCCTGATTAATCCGAT+CGG + chr1_3:2723527-2723546 Msa0096970:intron 30.0%
!! TTAGCTTTGCATGTAAATTC+AGG + chr1_3:2723555-2723574 Msa0096970:intron 30.0%
AAAAGTAGACTACACTGATA+AGG + chr1_3:2723711-2723730 Msa0096970:intron 30.0%
! AGTTAAGATGTATTTGGGAT+TGG + chr1_3:2723735-2723754 Msa0096970:intron 30.0%
TCCCTAATGAGTATTTATCT+GGG + chr1_3:2723799-2723818 Msa0096970:intron 30.0%
ACCCAGATAAATACTCATTA+GGG - chr1_3:2723803-2723822 None:intergenic 30.0%
AACCCAGATAAATACTCATT+AGG - chr1_3:2723804-2723823 None:intergenic 30.0%
TAATGAGTATTTATCTGGGT+TGG + chr1_3:2723803-2723822 Msa0096970:intron 30.0%
AAAACTTATCCCACTAAGTA+GGG - chr1_3:2723965-2723984 None:intergenic 30.0%
TTTCTATACGCGAAAATACA+TGG - chr1_3:2724019-2724038 None:intergenic 30.0%
! TTTTGAATTGAGACTTCTGA+CGG + chr1_3:2724045-2724064 Msa0096970:intron 30.0%
TTGCAATTTCTTGAAAGACT+AGG - chr1_3:2724082-2724101 None:intergenic 30.0%
! CTTTCAGTTTTCTTTGTCTT+GGG + chr1_3:2724125-2724144 Msa0096970:intron 30.0%
! TTTCAGTTTTCTTTGTCTTG+GGG + chr1_3:2724126-2724145 Msa0096970:intron 30.0%
! TTGTGGGTTATTAGTGTATT+TGG + chr1_3:2724219-2724238 Msa0096970:intron 30.0%
CAGCATATATGCAAAAATGT+AGG + chr1_3:2724350-2724369 Msa0096970:intron 30.0%
!!! TCTGTTAGCCTTTTTATGAT+TGG + chr1_3:2724466-2724485 Msa0096970:intron 30.0%
TAGTCAGTGTTGTCAAATAT+TGG + chr1_3:2724516-2724535 Msa0096970:intron 30.0%
! TTGTCAAATATTGGCTATGA+CGG + chr1_3:2724525-2724544 Msa0096970:intron 30.0%
!!! CAGCTCTATCTTTTAAAACT+TGG - chr1_3:2724594-2724613 None:intergenic 30.0%
AAGAACACACTAAGAAGAAA+TGG - chr1_3:2724688-2724707 None:intergenic 30.0%
TTGTATTATCTCTTTGTACG+TGG + chr1_3:2724735-2724754 Msa0096970:intron 30.0%
AGCAATTACTTTACTAGAAC+AGG - chr1_3:2724779-2724798 None:intergenic 30.0%
AAATGCAACTAAATTGGACA+GGG - chr1_3:2724870-2724889 None:intergenic 30.0%
AAAATGCAACTAAATTGGAC+AGG - chr1_3:2724871-2724890 None:intergenic 30.0%
AAGCGAAAAGATCAGATATT+CGG - chr1_3:2724992-2725011 None:intergenic 30.0%
GAATTCGTATGAACAAAACA+AGG - chr1_3:2725015-2725034 None:intergenic 30.0%
GTAATATCAGCGAAAACAAA+AGG - chr1_3:2725111-2725130 None:intergenic 30.0%
! CAGAAAATATCACACTGATT+TGG - chr1_3:2725277-2725296 None:intergenic 30.0%
! CAAATCAGTGTGATATTTTC+TGG + chr1_3:2725275-2725294 Msa0096970:CDS 30.0%
GTAAAGTTGACAGAAATTCT+TGG + chr1_3:2725332-2725351 Msa0096970:CDS 30.0%
! GTTGTCTGAAGTGAATTAAT+TGG - chr1_3:2725366-2725385 None:intergenic 30.0%
!! TAGTAGAAGATATTGATTCC+TGG + chr1_3:2725653-2725672 Msa0096970:intron 30.0%
TCTAGTATGAATCTTATGGA+TGG + chr1_3:2725687-2725706 Msa0096970:intron 30.0%
!! ATAAGAGTGCTAAAAGGAAA+AGG + chr1_3:2726359-2726378 Msa0096970:intron 30.0%
! CTGTTTCCTTTTTGTTGAAT+AGG + chr1_3:2726383-2726402 Msa0096970:intron 30.0%
GGTTAGATTATTCTTATCTG+AGG + chr1_3:2726404-2726423 Msa0096970:intron 30.0%
AACTACAAAAATACCTTAGG+TGG - chr1_3:2726609-2726628 None:intergenic 30.0%
TGTCAAACCTATGTATATAG+CGG + chr1_3:2726745-2726764 Msa0096970:intron 30.0%
GAAAAAACCGCTATATACAT+AGG - chr1_3:2726755-2726774 None:intergenic 30.0%
AGTATGCCAATATATCATCA+GGG + chr1_3:2726805-2726824 Msa0096970:intron 30.0%
TACATACCCTGATGATATAT+TGG - chr1_3:2726814-2726833 None:intergenic 30.0%
!! GTATGTATTTCTAGGTTGTT+GGG + chr1_3:2726827-2726846 Msa0096970:intron 30.0%
AGATATTTGATCAACATCAG+AGG + chr1_3:2727020-2727039 Msa0096970:CDS 30.0%
GATATTTGATCAACATCAGA+GGG + chr1_3:2727021-2727040 Msa0096970:CDS 30.0%
AACATGACCATCAATGTAAT+GGG - chr1_3:2727218-2727237 None:intergenic 30.0%
TACATTATCTCCTGGTATAT+TGG + chr1_3:2727285-2727304 Msa0096970:CDS 30.0%
TCAACTTGATTAAAGGGATT+AGG - chr1_3:2727544-2727563 None:intergenic 30.0%
!! GGATGAAAAAGTATTTGATG+AGG - chr1_3:2727578-2727597 None:intergenic 30.0%
!!! GTACACAATTTTAGAGCAAA+AGG + chr1_3:2727835-2727854 Msa0096970:CDS 30.0%
!!! TTGGTTGCCATTTATTTTGA+TGG + chr1_3:2728058-2728077 Msa0096970:three_prime_UTR 30.0%
!!! TGGTTGCCATTTATTTTGAT+GGG + chr1_3:2728059-2728078 Msa0096970:three_prime_UTR 30.0%
GGTCTATTACACATTTGATA+TGG + chr1_3:2728101-2728120 Msa0096970:three_prime_UTR 30.0%
TATGATTGTAACTAAGGATG+AGG + chr1_3:2728260-2728279 Msa0096970:three_prime_UTR 30.0%
!! GTTTTGATGTTGTAACAGAT+TGG + chr1_3:2728282-2728301 Msa0096970:three_prime_UTR 30.0%
GAAAATCGAAGAGAGTTTCA+TGG + chr1_3:2723345-2723364 Msa0096970:CDS 35.0%
TACCTGACAAAGATCTAACT+CGG - chr1_3:2723375-2723394 None:intergenic 35.0%
ATCAATCATCTAATCTCCAG+AGG + chr1_3:2723502-2723521 Msa0096970:intron 35.0%
CTCCCTAATGAGTATTTATC+TGG + chr1_3:2723798-2723817 Msa0096970:intron 35.0%
CAAAACTTATCCCACTAAGT+AGG - chr1_3:2723966-2723985 None:intergenic 35.0%
! CTACTTAGTGGGATAAGTTT+TGG + chr1_3:2723964-2723983 Msa0096970:intron 35.0%
TTTGAATTGAGACTTCTGAC+GGG + chr1_3:2724046-2724065 Msa0096970:intron 35.0%
! GCTTTCAGTTTTCTTTGTCT+TGG + chr1_3:2724124-2724143 Msa0096970:intron 35.0%
GGATTAGATTAGATGGTGAA+TGG + chr1_3:2724160-2724179 Msa0096970:intron 35.0%
ACAAAAATATAGCGCGTGTT+TGG - chr1_3:2724293-2724312 None:intergenic 35.0%
ATGTTGTCAAAAAACGTGCA+CGG - chr1_3:2724566-2724585 None:intergenic 35.0%
TTTAAAAGATAGAGCTGCTG+TGG + chr1_3:2724597-2724616 Msa0096970:intron 35.0%
! CTAGTATTATCAATGGTGGA+TGG - chr1_3:2724661-2724680 None:intergenic 35.0%
TTCTTCTTAGTGTGTTCTTG+TGG + chr1_3:2724689-2724708 Msa0096970:intron 35.0%
AGCGAAAAGATCAGATATTC+GGG - chr1_3:2724991-2725010 None:intergenic 35.0%
CGCTGATATTACTGTTAGTA+AGG + chr1_3:2725119-2725138 Msa0096970:intron 35.0%
!!! GGATATTTTGGTGTTCAAAC+AGG + chr1_3:2725140-2725159 Msa0096970:intron 35.0%
AGTTGACAGAAATTCTTGGT+TGG + chr1_3:2725336-2725355 Msa0096970:CDS 35.0%
TTATATAGCCTCACTATGAC+AGG - chr1_3:2725390-2725409 None:intergenic 35.0%
GAGGCTATATAAGTTGCAAT+TGG + chr1_3:2725398-2725417 Msa0096970:intron 35.0%
TGGTCTTTATTCTCTAACAC+TGG + chr1_3:2725418-2725437 Msa0096970:intron 35.0%
GGTCTTTATTCTCTAACACT+GGG + chr1_3:2725419-2725438 Msa0096970:intron 35.0%
TTTATTCTCTAACACTGGGA+TGG + chr1_3:2725423-2725442 Msa0096970:intron 35.0%
AATGCAGAGTTATAGAGAGA+AGG + chr1_3:2725556-2725575 Msa0096970:CDS 35.0%
ATGCAGAGTTATAGAGAGAA+GGG + chr1_3:2725557-2725576 Msa0096970:CDS 35.0%
!!! AAACAGGTTTTGGATGAAAG+TGG - chr1_3:2726122-2726141 None:intergenic 35.0%
CACAGCACAAAGAAATAAAC+AGG - chr1_3:2726138-2726157 None:intergenic 35.0%
ACAAGGATGATATCTTTGCT+TGG - chr1_3:2726470-2726489 None:intergenic 35.0%
! TCTGATGATATTTTACCTCC+TGG + chr1_3:2726510-2726529 Msa0096970:CDS 35.0%
! TATTTTACCTCCTGGATTTG+AGG + chr1_3:2726518-2726537 Msa0096970:CDS 35.0%
! ATTTTACCTCCTGGATTTGA+GGG + chr1_3:2726519-2726538 Msa0096970:CDS 35.0%
CTAATAACTGGTATTTCGGA+CGG - chr1_3:2726576-2726595 None:intergenic 35.0%
CCAGCTAATAACTGGTATTT+CGG - chr1_3:2726580-2726599 None:intergenic 35.0%
GGTTTAATCCAGCTAATAAC+TGG - chr1_3:2726588-2726607 None:intergenic 35.0%
CAGTATGCCAATATATCATC+AGG + chr1_3:2726804-2726823 Msa0096970:intron 35.0%
TCATCAGGGTATGTATTTCT+AGG + chr1_3:2726819-2726838 Msa0096970:intron 35.0%
!! GGTATGTATTTCTAGGTTGT+TGG + chr1_3:2726826-2726845 Msa0096970:intron 35.0%
TTCGTGGATAAATAGCTTCA+AGG - chr1_3:2727057-2727076 None:intergenic 35.0%
CAACATGACCATCAATGTAA+TGG - chr1_3:2727219-2727238 None:intergenic 35.0%
TTATCTCCTGGTATATTGGA+TGG + chr1_3:2727289-2727308 Msa0096970:CDS 35.0%
TTTGAACCATCCAATATACC+AGG - chr1_3:2727298-2727317 None:intergenic 35.0%
ACTTGATTAAAGGGATTAGG+AGG - chr1_3:2727541-2727560 None:intergenic 35.0%
GTGGTCTCAACTTGATTAAA+GGG - chr1_3:2727550-2727569 None:intergenic 35.0%
AGTGGTCTCAACTTGATTAA+AGG - chr1_3:2727551-2727570 None:intergenic 35.0%
AGTATTTGATGAGGATGTAG+TGG - chr1_3:2727569-2727588 None:intergenic 35.0%
!! CATAGTTTGATAATGGTTGC+TGG - chr1_3:2727810-2727829 None:intergenic 35.0%
!! ATACAAGGCTTCGTTGTTTT+TGG - chr1_3:2727868-2727887 None:intergenic 35.0%
TTAATAGTTCCAGAGGATGT+CGG + chr1_3:2727893-2727912 Msa0096970:CDS 35.0%
AAATGATGCATCATGCTGAA+AGG - chr1_3:2727935-2727954 None:intergenic 35.0%
CAGTTAACTGAAGTCTTACA+TGG + chr1_3:2728026-2728045 Msa0096970:exon 35.0%
!!! GGTTGCCATTTATTTTGATG+GGG + chr1_3:2728060-2728079 Msa0096970:three_prime_UTR 35.0%
AATGTATGATCAGAAACTGG+CGG - chr1_3:2728171-2728190 None:intergenic 35.0%
AAAGAATCACCAAGAAAGAG+AGG - chr1_3:2728241-2728260 None:intergenic 35.0%
GTATAAATACATCATCCAGC+TGG - chr1_3:2728316-2728335 None:intergenic 35.0%
TGACAAAGATCTAACTCGGA+AGG - chr1_3:2723371-2723390 None:intergenic 40.0%
TTCCGAGTTAGATCTTTGTC+AGG + chr1_3:2723370-2723389 Msa0096970:CDS 40.0%
GTCTTGTGCTGTGTAATCTT+TGG + chr1_3:2723845-2723864 Msa0096970:intron 40.0%
!! CTTAGTGGGATAAGTTTTGG+TGG + chr1_3:2723967-2723986 Msa0096970:intron 40.0%
! GACAACACTGACTAACACTA+CGG - chr1_3:2724510-2724529 None:intergenic 40.0%
!! GTATTATCAATGGTGGATGG+TGG - chr1_3:2724658-2724677 None:intergenic 40.0%
TGTTCTTGTGGTTGTTAACC+AGG + chr1_3:2724701-2724720 Msa0096970:intron 40.0%
AATACAAAGCATAAGCAGCC+TGG - chr1_3:2724722-2724741 None:intergenic 40.0%
ACTTGAAACCACACTAACAC+CGG - chr1_3:2725056-2725075 None:intergenic 40.0%
!!! TTTTGGTGTTCAAACAGGCT+TGG + chr1_3:2725145-2725164 Msa0096970:intron 40.0%
ATAACTCTGCATTGAGACTG+AGG - chr1_3:2725549-2725568 None:intergenic 40.0%
AATTTGCCCAACAAGAGGAT+CGG - chr1_3:2725583-2725602 None:intergenic 40.0%
!! TCGTTAATTTGCCCAACAAG+AGG - chr1_3:2725588-2725607 None:intergenic 40.0%
TACTAGATACTTAGAAGGCC+AGG - chr1_3:2725674-2725693 None:intergenic 40.0%
! CTTTGTGCTGTGAGTTTTTG+TGG + chr1_3:2726146-2726165 Msa0096970:intron 40.0%
AGGAATCTCCTTCACAAGTT+GGG + chr1_3:2726424-2726443 Msa0096970:CDS 40.0%
GAATTCAACCCAACTTGTGA+AGG - chr1_3:2726435-2726454 None:intergenic 40.0%
AGGATGATATCTTTGCTTGG+AGG - chr1_3:2726467-2726486 None:intergenic 40.0%
ATATCATCCTTGTTGCCTCA+AGG + chr1_3:2726477-2726496 Msa0096970:CDS 40.0%
CCGAAATACCAGTTATTAGC+TGG + chr1_3:2726577-2726596 Msa0096970:CDS 40.0%
TAGCTGGATTAAACCACCTA+AGG + chr1_3:2726593-2726612 Msa0096970:CDS 40.0%
ACGTTGGTGCAAGAAAGTAA+AGG + chr1_3:2726677-2726696 Msa0096970:intron 40.0%
TCGTCAACATCCACTGAAAT+AGG - chr1_3:2727193-2727212 None:intergenic 40.0%
GACGATTCCCATTACATTGA+TGG + chr1_3:2727208-2727227 Msa0096970:CDS 40.0%
CATCTTCAACAGGCGTAATT+GGG - chr1_3:2727249-2727268 None:intergenic 40.0%
CAATTACGCCTGTTGAAGAT+GGG + chr1_3:2727248-2727267 Msa0096970:CDS 40.0%
AATTACGCCTGTTGAAGATG+GGG + chr1_3:2727249-2727268 Msa0096970:CDS 40.0%
TTAGTGAAGAGCAGTGAACA+TGG + chr1_3:2727379-2727398 Msa0096970:CDS 40.0%
ACCAACTTCTCAATCACTTC+CGG - chr1_3:2727448-2727467 None:intergenic 40.0%
TGTGTGAGTATAGGAAGAAG+TGG - chr1_3:2727599-2727618 None:intergenic 40.0%
CGTCAACTATGTCTACTCAA+TGG + chr1_3:2727635-2727654 Msa0096970:CDS 40.0%
AAGAGCTTGATTCAGCAACA+TGG + chr1_3:2727736-2727755 Msa0096970:CDS 40.0%
!! TTGATAATGGTTGCTGGTTC+TGG - chr1_3:2727804-2727823 None:intergenic 40.0%
TAACTGAAGTCTTACATGGC+TGG + chr1_3:2728030-2728049 Msa0096970:exon 40.0%
!!! TGCCATTTATTTTGATGGGG+AGG + chr1_3:2728063-2728082 Msa0096970:three_prime_UTR 40.0%
TAAATACATCATCCAGCTGG+TGG - chr1_3:2728313-2728332 None:intergenic 40.0%
AAGGTCCGATCGGATTAATC+AGG - chr1_3:2723535-2723554 None:intergenic 45.0%
GCAAAGCTAAAAGGTCCGAT+CGG - chr1_3:2723545-2723564 None:intergenic 45.0%
ATGTAGCCAACCCTACTTAG+TGG + chr1_3:2723952-2723971 Msa0096970:intron 45.0%
TGTAGCCAACCCTACTTAGT+GGG + chr1_3:2723953-2723972 Msa0096970:intron 45.0%
CTTATCCCACTAAGTAGGGT+TGG - chr1_3:2723961-2723980 None:intergenic 45.0%
! CAGTTTTCTTTGTCTTGGGG+TGG + chr1_3:2724129-2724148 Msa0096970:intron 45.0%
! TGTCTTGGGGTGGTGTTAAT+TGG + chr1_3:2724139-2724158 Msa0096970:intron 45.0%
TGTATGAGCAACTGCTCTTG+TGG + chr1_3:2724202-2724221 Msa0096970:intron 45.0%
GTATGAGCAACTGCTCTTGT+GGG + chr1_3:2724203-2724222 Msa0096970:intron 45.0%
!! TTTCAGGTTCCAACGACATG+TGG + chr1_3:2724842-2724861 Msa0096970:intron 45.0%
AAAAAGCCAACCCCACATAG+TGG + chr1_3:2724935-2724954 Msa0096970:intron 45.0%
AAAAGCCAACCCCACATAGT+GGG + chr1_3:2724936-2724955 Msa0096970:intron 45.0%
! AAGCCTTATCCCACTATGTG+GGG - chr1_3:2724948-2724967 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG - chr1_3:2724949-2724968 None:intergenic 45.0%
CTGTTGCTCATGTGTTAGAC+CGG + chr1_3:2725034-2725053 Msa0096970:intron 45.0%
ATCTCAGCCACTTCCAACAT+GGG + chr1_3:2725247-2725266 Msa0096970:CDS 45.0%
!! ATTTTCTGGAGATGTACCGC+TGG + chr1_3:2725289-2725308 Msa0096970:CDS 45.0%
AGACAACACCTGTCATAGTG+AGG + chr1_3:2725379-2725398 Msa0096970:intron 45.0%
AAGGTCTCGGGATCTGATTA+GGG + chr1_3:2725453-2725472 Msa0096970:intron 45.0%
! AGCACAAAGAGTGCAAGGAA+AGG - chr1_3:2726198-2726217 None:intergenic 45.0%
TTCCTTGCACTCTTTGTGCT+TGG + chr1_3:2726198-2726217 Msa0096970:intron 45.0%
! AACCAAGCACAAAGAGTGCA+AGG - chr1_3:2726203-2726222 None:intergenic 45.0%
TGCACTCTTTGTGCTTGGTT+AGG + chr1_3:2726203-2726222 Msa0096970:intron 45.0%
TAGACTCTCAAGTGCATGCA+TGG - chr1_3:2726275-2726294 None:intergenic 45.0%
GAGGAATCTCCTTCACAAGT+TGG + chr1_3:2726423-2726442 Msa0096970:CDS 45.0%
AGATCGTGCTAGATCTCACA+TGG + chr1_3:2726969-2726988 Msa0096970:intron 45.0%
GGAGGAATGGAAGATATTCG+TGG - chr1_3:2727073-2727092 None:intergenic 45.0%
! AGACTCGTACTTTGGAGGAA+TGG - chr1_3:2727086-2727105 None:intergenic 45.0%
AGAGAAGACTCGTACTTTGG+AGG - chr1_3:2727091-2727110 None:intergenic 45.0%
GCAAGAGAAGACTCGTACTT+TGG - chr1_3:2727094-2727113 None:intergenic 45.0%
AATAGGACTGCATCGAAGGA+AGG - chr1_3:2727176-2727195 None:intergenic 45.0%
CTGAAATAGGACTGCATCGA+AGG - chr1_3:2727180-2727199 None:intergenic 45.0%
TCGATGCAGTCCTATTTCAG+TGG + chr1_3:2727180-2727199 Msa0096970:intron 45.0%
CCATCTTCAACAGGCGTAAT+TGG - chr1_3:2727250-2727269 None:intergenic 45.0%
CCAATTACGCCTGTTGAAGA+TGG + chr1_3:2727247-2727266 Msa0096970:CDS 45.0%
CACTGTTACGACTATGTCGA+TGG + chr1_3:2727318-2727337 Msa0096970:CDS 45.0%
!! GCTGCATCTGTTGCTTTAAC+TGG + chr1_3:2727355-2727374 Msa0096970:CDS 45.0%
TCCGGAAGTGATTGAGAAGT+TGG + chr1_3:2727444-2727463 Msa0096970:CDS 45.0%
GCACAGTATGCACAAAACAC+CGG + chr1_3:2727490-2727509 Msa0096970:CDS 45.0%
TCTTCCTATACTCACACAGC+CGG + chr1_3:2727601-2727620 Msa0096970:CDS 45.0%
TGTCTACTCAATGGCATCGT+AGG + chr1_3:2727644-2727663 Msa0096970:CDS 45.0%
! GCAATAGCTGGACTGATTTC+AGG - chr1_3:2727670-2727689 None:intergenic 45.0%
TATTGCTGCTACTCCTGTTG+AGG + chr1_3:2727684-2727703 Msa0096970:CDS 45.0%
TTTGTTGAAGGGACCTCAAC+AGG - chr1_3:2727700-2727719 None:intergenic 45.0%
AGCTTGATTCAGCAACATGG+AGG + chr1_3:2727739-2727758 Msa0096970:CDS 45.0%
TGACGAGGGATTACCTTGTT+GGG - chr1_3:2727962-2727981 None:intergenic 45.0%
AACAAGGTAATCCCTCGTCA+GGG + chr1_3:2727962-2727981 Msa0096970:CDS 45.0%
! TCTTACATGGCTGGTGATGT+TGG + chr1_3:2728039-2728058 Msa0096970:three_prime_UTR 45.0%
GGCCTCCCCATCAAAATAAA+TGG - chr1_3:2728068-2728087 None:intergenic 45.0%
!!! TTTATTTTGATGGGGAGGCC+TGG + chr1_3:2728068-2728087 Msa0096970:three_prime_UTR 45.0%
AATAGACCTTGCATGCATCC+AGG - chr1_3:2728089-2728108 None:intergenic 45.0%
CAGAAACTGGCGGCAAATTA+GGG - chr1_3:2728161-2728180 None:intergenic 45.0%
TCAGAAACTGGCGGCAAATT+AGG - chr1_3:2728162-2728181 None:intergenic 45.0%
!! TTTATTTATATATATTATCT+TGG + chr1_3:2726228-2726247 Msa0096970:intron 5.0%
GCGGTGTGTGAAAATATGCG+TGG + chr1_3:2723317-2723336 Msa0096970:exon 50.0%
CTTATCCCACTATGTGGGGT+TGG - chr1_3:2724944-2724963 None:intergenic 50.0%
! CAACCCCACATAGTGGGATA+AGG + chr1_3:2724942-2724961 Msa0096970:intron 50.0%
! CCAAGCCTTATCCCACTATG+TGG - chr1_3:2724950-2724969 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG + chr1_3:2724947-2724966 Msa0096970:intron 50.0%
! GTGGGATAAGGCTTGGTTGT+TGG + chr1_3:2724954-2724973 Msa0096970:intron 50.0%
! GTGTTAGACCGGTGTTAGTG+TGG + chr1_3:2725045-2725064 Msa0096970:intron 50.0%
GATCTCAGCCACTTCCAACA+TGG + chr1_3:2725246-2725265 Msa0096970:CDS 50.0%
GATACTTCTGCAAGCACCAG+CGG - chr1_3:2725308-2725327 None:intergenic 50.0%
! GCTGGTGCTTGCAGAAGTAT+CGG + chr1_3:2725307-2725326 Msa0096970:CDS 50.0%
TCTCTAACACTGGGATGGAG+AGG + chr1_3:2725428-2725447 Msa0096970:intron 50.0%
GAAGGTCTCGGGATCTGATT+AGG + chr1_3:2725452-2725471 Msa0096970:intron 50.0%
ACTCTCAAGTGCATGCATGG+TGG - chr1_3:2726272-2726291 None:intergenic 50.0%
AGCTTCTCCTTGAGGCAACA+AGG - chr1_3:2726487-2726506 None:intergenic 50.0%
TTGTTGCCTCAAGGAGAAGC+TGG + chr1_3:2726486-2726505 Msa0096970:CDS 50.0%
TCAGAACCAGCTTCTCCTTG+AGG - chr1_3:2726495-2726514 None:intergenic 50.0%
TGAGTTCCCTCAAATCCAGG+AGG - chr1_3:2726528-2726547 None:intergenic 50.0%
GCATGAGTTCCCTCAAATCC+AGG - chr1_3:2726531-2726550 None:intergenic 50.0%
GCTAGATCTCACATGGCAAG+TGG + chr1_3:2726976-2726995 Msa0096970:CDS 50.0%
AGATCTCACATGGCAAGTGG+TGG + chr1_3:2726979-2726998 Msa0096970:CDS 50.0%
CCTGTTGAAGATGGGGATGT+GGG + chr1_3:2727256-2727275 Msa0096970:CDS 50.0%
GGAGCGGATACATTATCTCC+TGG + chr1_3:2727277-2727296 Msa0096970:CDS 50.0%
ACAGGAGTAGCAGCAATAGC+TGG - chr1_3:2727682-2727701 None:intergenic 50.0%
TGGCGATTACTGGAGGAGTA+TGG - chr1_3:2727784-2727803 None:intergenic 50.0%
!! TTGCTGGTTCTGGCGATTAC+TGG - chr1_3:2727794-2727813 None:intergenic 50.0%
AGTTCCAGAGGATGTCGGAA+TGG + chr1_3:2727898-2727917 Msa0096970:CDS 50.0%
GCATCATTTCAGCCCCAACA+AGG + chr1_3:2727946-2727965 Msa0096970:CDS 50.0%
GACGAGGGATTACCTTGTTG+GGG - chr1_3:2727961-2727980 None:intergenic 50.0%
CTGACGAGGGATTACCTTGT+TGG - chr1_3:2727963-2727982 None:intergenic 50.0%
CAACAAGGTAATCCCTCGTC+AGG + chr1_3:2727961-2727980 Msa0096970:CDS 50.0%
GAACTATGCATCCCTGACGA+GGG - chr1_3:2727976-2727995 None:intergenic 50.0%
TGAACTATGCATCCCTGACG+AGG - chr1_3:2727977-2727996 None:intergenic 50.0%
! GCTGCAGATTTTCGGTCATG+AGG - chr1_3:2728216-2728235 None:intergenic 50.0%
! GAGAGGCAGCTGCAGATTTT+CGG - chr1_3:2728224-2728243 None:intergenic 50.0%
AGATTGGAGATACCACCAGC+TGG + chr1_3:2728298-2728317 Msa0096970:three_prime_UTR 50.0%
ACGCACACCAATGCCAATGC+AGG + chr1_3:2724266-2724285 Msa0096970:intron 55.0%
CGCACACCAATGCCAATGCA+GGG + chr1_3:2724267-2724286 Msa0096970:intron 55.0%
! GTTTGGCCCTGCATTGGCAT+TGG - chr1_3:2724276-2724295 None:intergenic 55.0%
! TATTGGCTATGACGGCGCCA+TGG + chr1_3:2724533-2724552 Msa0096970:intron 55.0%
ACGTGCACGGAAATCCTCCA+TGG - chr1_3:2724553-2724572 None:intergenic 55.0%
! TGGTGGATGGTGGTCCATTG+TGG - chr1_3:2724648-2724667 None:intergenic 55.0%
GACAGGGAACCACATGTCGT+TGG - chr1_3:2724854-2724873 None:intergenic 55.0%
TCAGCCACTTCCAACATGGG+AGG + chr1_3:2725250-2725269 Msa0096970:CDS 55.0%
CAGCCACTTCCAACATGGGA+GGG + chr1_3:2725251-2725270 Msa0096970:CDS 55.0%
!! CTGATTTGGCCCTCCCATGT+TGG - chr1_3:2725263-2725282 None:intergenic 55.0%
!! GGTGCTTGCAGAAGTATCGG+AGG + chr1_3:2725310-2725329 Msa0096970:CDS 55.0%
ACACTGGGATGGAGAGGTGA+AGG + chr1_3:2725434-2725453 Msa0096970:intron 55.0%
GGATGGAGAGGTGAAGGTCT+CGG + chr1_3:2725440-2725459 Msa0096970:intron 55.0%
GATGGAGAGGTGAAGGTCTC+GGG + chr1_3:2725441-2725460 Msa0096970:intron 55.0%
AGAAGGGCCGATCCTCTTGT+TGG + chr1_3:2725573-2725592 Msa0096970:CDS 55.0%
GAAGGGCCGATCCTCTTGTT+GGG + chr1_3:2725574-2725593 Msa0096970:CDS 55.0%
GCCTGTTGAAGATGGGGATG+TGG + chr1_3:2727255-2727274 Msa0096970:CDS 55.0%
CCCACATCCCCATCTTCAAC+AGG - chr1_3:2727259-2727278 None:intergenic 55.0%
TGAAGATGGGGATGTGGGAG+CGG + chr1_3:2727261-2727280 Msa0096970:CDS 55.0%
TCCTATACTCACACAGCCGG+AGG + chr1_3:2727604-2727623 Msa0096970:CDS 55.0%
ACCTCCGGCTGTGTGAGTAT+AGG - chr1_3:2727608-2727627 None:intergenic 55.0%
AGTTGACGCCATCTGACCTC+CGG - chr1_3:2727623-2727642 None:intergenic 55.0%
!! CTGGTTCTGGCGATTACTGG+AGG - chr1_3:2727791-2727810 None:intergenic 55.0%
AGCTCCATTCCGACATCCTC+TGG - chr1_3:2727905-2727924 None:intergenic 55.0%
CTGCAGCTGCCTCTCTTTCT+TGG + chr1_3:2728229-2728248 Msa0096970:three_prime_UTR 55.0%
TGGCCCTCCCATGTTGGAAG+TGG - chr1_3:2725257-2725276 None:intergenic 60.0%
CTCACATGGCAAGTGGTGGC+TGG + chr1_3:2726983-2727002 Msa0096970:CDS 60.0%
TCACACAGCCGGAGGTCAGA+TGG + chr1_3:2727612-2727631 Msa0096970:CDS 60.0%
GCGCGTGTTTGGCCCTGCAT+TGG - chr1_3:2724282-2724301 None:intergenic 65.0%
TGGCTATGACGGCGCCATGG+AGG + chr1_3:2724536-2724555 Msa0096970:intron 65.0%
GGGAGGCCTGGATGCATGCA+AGG + chr1_3:2728080-2728099 Msa0096970:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2723250 2728456 2723250 ID=Msa0096970;Name=Msa0096970
chr1_3 mRNA 2723250 2728456 2723250 ID=Msa0096970-mRNA-1;Parent=Msa0096970;Name=Msa0096970-mRNA-1;_AED=0.18;_eAED=0.18;_QI=82|0.6|0.66|1|1|1|6|424|482
chr1_3 exon 2723250 2723391 2723250 ID=Msa0096970-mRNA-1:exon:759;Parent=Msa0096970-mRNA-1
chr1_3 exon 2725232 2725357 2725232 ID=Msa0096970-mRNA-1:exon:760;Parent=Msa0096970-mRNA-1
chr1_3 exon 2725531 2725614 2725531 ID=Msa0096970-mRNA-1:exon:761;Parent=Msa0096970-mRNA-1
chr1_3 exon 2726405 2726614 2726405 ID=Msa0096970-mRNA-1:exon:762;Parent=Msa0096970-mRNA-1
chr1_3 exon 2726971 2727095 2726971 ID=Msa0096970-mRNA-1:exon:763;Parent=Msa0096970-mRNA-1
chr1_3 exon 2727189 2728456 2727189 ID=Msa0096970-mRNA-1:exon:764;Parent=Msa0096970-mRNA-1
chr1_3 five_prime_UTR 2723250 2723331 2723250 ID=Msa0096970-mRNA-1:five_prime_utr;Parent=Msa0096970-mRNA-1
chr1_3 CDS 2723332 2723391 2723332 ID=Msa0096970-mRNA-1:cds;Parent=Msa0096970-mRNA-1
chr1_3 CDS 2725232 2725357 2725232 ID=Msa0096970-mRNA-1:cds;Parent=Msa0096970-mRNA-1
chr1_3 CDS 2725531 2725614 2725531 ID=Msa0096970-mRNA-1:cds;Parent=Msa0096970-mRNA-1
chr1_3 CDS 2726405 2726614 2726405 ID=Msa0096970-mRNA-1:cds;Parent=Msa0096970-mRNA-1
chr1_3 CDS 2726971 2727095 2726971 ID=Msa0096970-mRNA-1:cds;Parent=Msa0096970-mRNA-1
chr1_3 CDS 2727189 2728032 2727189 ID=Msa0096970-mRNA-1:cds;Parent=Msa0096970-mRNA-1
chr1_3 three_prime_UTR 2728033 2728456 2728033 ID=Msa0096970-mRNA-1:three_prime_utr;Parent=Msa0096970-mRNA-1
Gene Sequence

>Msa0096970

ATGCGTGGATTGCGAAAATCGAAGAGAGTTTCATGGCCTTCCGAGTTAGATCTTTGTCAGGAGACTGAGTGCAAGATCTCAGCCACTTCCAACATGGGAGGGCCAAATCAGTGTGATATTTTCTGGAGATGTACCGCTGGTGCTTGCAGAAGTATCGGAGGTAAAGTTGACAGAAATTCTTGGTTGGATCTTAACTTGGTGCCTCAGTCTCAATGCAGAGTTATAGAGAGAAGGGCCGATCCTCTTGTTGGGCAAATTAACGAGATATCAGTTAGATTATTCTTATCTGAGGAATCTCCTTCACAAGTTGGGTTGAATTCTCAAGATCACCTCCAAGCAAAGATATCATCCTTGTTGCCTCAAGGAGAAGCTGGTTCTGATGATATTTTACCTCCTGGATTTGAGGGAACTCATGCTTCAAGTCAGTTTGACATTAAGCCGTCCGAAATACCAGTTATTAGCTGGATTAAACCACCTAAGATCGTGCTAGATCTCACATGGCAAGTGGTGGCTGGAGAAGAAAGCAAAGAGATATTTGATCAACATCAGAGGGAGATGAGAGTCCTTGAAGCTATTTATCCACGAATATCTTCCATTCCTCCAAATCCTATTTCAGTGGATGTTGACGATTCCCATTACATTGATGGTCATGTTGTCGTGATCCCAATTACGCCTGTTGAAGATGGGGATGTGGGAGCGGATACATTATCTCCTGGTATATTGGATGGTTCAAACACTGTTACGACTATGTCGATGGTGTCTGATGTAGCTGCTGCATCTGTTGCTTTAACTGGCTTAGTGAAGAGCAGTGAACATGGTAATTTGATTGATCCTGAATTACTCAATAATATTCTCAACAATCCGGAAGTGATTGAGAAGTTGGTTAGAAATTATAATGTTCAAAATGCACAGTATGCACAAAACACCGGATCATCATCAAATGTTTTTTCACATCCTCCTAATCCCTTTAATCAAGTTGAGACCACTACATCCTCATCAAATACTTTTTCATCCACTTCTTCCTATACTCACACAGCCGGAGGTCAGATGGCGTCAACTATGTCTACTCAATGGCATCGTAGGCCTGAAATCAGTCCAGCTATTGCTGCTACTCCTGTTGAGGTCCCTTCAACAAAAGATGTAAACTACTATAAGAGCTTGATTCAGCAACATGGAGGAGATAAACAAGAAGCACTTCCATACTCCTCCAGTAATCGCCAGAACCAGCAACCATTATCAAACTATGATACAGTACACAATTTTAGAGCAAAAGGATCAAAACCAAAAACAACGAAGCCTTGTATCTTTTTTAATAGTTCCAGAGGATGTCGGAATGGAGCTAACTGTACCTTTCAGCATGATGCATCATTTCAGCCCCAACAAGGTAATCCCTCGTCAGGGATGCATAGTTCAAAGAGAATGAAAATGGATAATGAGATCAGCAGTTAA
Protein sequence

>Msa0096970

MRGLRKSKRVSWPSELDLCQETECKISATSNMGGPNQCDIFWRCTAGACRSIGGKVDRNSWLDLNLVPQSQCRVIERRADPLVGQINEISVRLFLSEESPSQVGLNSQDHLQAKISSLLPQGEAGSDDILPPGFEGTHASSQFDIKPSEIPVISWIKPPKIVLDLTWQVVAGEESKEIFDQHQREMRVLEAIYPRISSIPPNPISVDVDDSHYIDGHVVVIPITPVEDGDVGADTLSPGILDGSNTVTTMSMVSDVAAASVALTGLVKSSEHGNLIDPELLNNILNNPEVIEKLVRNYNVQNAQYAQNTGSSSNVFSHPPNPFNQVETTTSSSNTFSSTSSYTHTAGGQMASTMSTQWHRRPEISPAIAATPVEVPSTKDVNYYKSLIQQHGGDKQEALPYSSSNRQNQQPLSNYDTVHNFRAKGSKPKTTKPCIFFNSSRGCRNGANCTFQHDASFQPQQGNPSSGMHSSKRMKMDNEISS*