AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145000 MtrunA17_Chr1g0153161 95.477 398 18 0 85 482 15 412 0.0 744
Msa0145000 MtrunA17_Chr8g0372101 37.945 253 116 7 87 300 18 268 6.48e-31 125
Msa0145000 MtrunA17_Chr8g0372101 46.000 100 51 2 377 476 461 557 1.09e-17 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145000 AT1G19860.2 42.424 429 173 15 91 479 21 415 3.28e-84 266
Msa0145000 AT1G19860.1 42.424 429 173 15 91 479 19 413 4.50e-84 265
Msa0145000 AT5G66270.1 26.077 441 217 15 91 456 21 427 9.89e-25 107
Msa0145000 AT3G51180.1 32.489 237 109 9 91 295 23 240 1.29e-17 85.9

Find 138 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTTCAACAGGCGTAAT+TGG 0.151616 1_4:-4597959 None:intergenic
TCAGAAACTGGCGGCAAATT+AGG 0.194412 1_4:-4598871 None:intergenic
ATTTACTTTCATGTTAAAAT+TGG 0.202521 1_4:+4599112 Msa0145000:three_prime_UTR
GCTGCATCTGTTGCTTTAAC+TGG 0.213192 1_4:+4598067 Msa0145000:CDS
CATGTTAAAATTGGCATAAA+TGG 0.216173 1_4:+4599121 Msa0145000:three_prime_UTR
CTGCAGCTGCCTCTCTTTCT+TGG 0.229038 1_4:+4598941 Msa0145000:three_prime_UTR
AACATGAAAGTAAATTAAAA+TGG 0.238916 1_4:-4599104 None:intergenic
AGAATATTATTGAGTAATTC+AGG 0.252544 1_4:-4598127 None:intergenic
TTGCTGGTTCTGGCGATTAC+TGG 0.255064 1_4:-4598503 None:intergenic
GCAATAGCTGGACTGATTTC+AGG 0.255929 1_4:-4598379 None:intergenic
TACATTATCTCCTGGTATAT+TGG 0.266652 1_4:+4597997 Msa0145000:CDS
TCGTCAACATCCACTGAAAT+AGG 0.270410 1_4:-4597902 None:intergenic
TTGATAATGGTTGCTGGTTC+TGG 0.279964 1_4:-4598513 None:intergenic
AGTGGTCTCAACTTGATTAA+AGG 0.289882 1_4:-4598260 None:intergenic
GACGATTCCCATTACATTGA+TGG 0.304640 1_4:+4597920 Msa0145000:CDS
GGCCTCCCCATCAAAATAAA+TGG 0.309355 1_4:-4598777 None:intergenic
TAGTTCAAAGAGAATGAAAA+TGG 0.338707 1_4:+4598702 Msa0145000:CDS
CCAGCTAATAACTGGTATTT+CGG 0.350750 1_4:-4597289 None:intergenic
TGACGAGGGATTACCTTGTT+GGG 0.359371 1_4:-4598671 None:intergenic
TTTGTTGAAGGGACCTCAAC+AGG 0.365719 1_4:-4598409 None:intergenic
ATTCTTTATGATTGTAACTA+AGG 0.365941 1_4:+4598966 Msa0145000:three_prime_UTR
GTGGTCTCAACTTGATTAAA+GGG 0.370543 1_4:-4598259 None:intergenic
CTGACGAGGGATTACCTTGT+TGG 0.373906 1_4:-4598672 None:intergenic
TCAACTTGATTAAAGGGATT+AGG 0.374101 1_4:-4598253 None:intergenic
ACCAACTTCTCAATCACTTC+CGG 0.375302 1_4:-4598157 None:intergenic
CAGAAACTGGCGGCAAATTA+GGG 0.377427 1_4:-4598870 None:intergenic
GGTCTATTACACATTTGATA+TGG 0.380526 1_4:+4598813 Msa0145000:three_prime_UTR
CATAGTTTGATAATGGTTGC+TGG 0.387584 1_4:-4598519 None:intergenic
CAACAAGGTAATCCCTCGTC+AGG 0.403842 1_4:+4598673 Msa0145000:CDS
AACATGACCATCAATGTAAT+GGG 0.405673 1_4:-4597927 None:intergenic
CAGAAAATATCACACTGATT+TGG 0.405868 1_4:-4595986 None:intergenic
GTAAAGTTGACAGAAATTCT+TGG 0.406741 1_4:+4596044 Msa0145000:CDS
AGCTCCATTCCGACATCCTC+TGG 0.406929 1_4:-4598614 None:intergenic
GGTTTAATCCAGCTAATAAC+TGG 0.414260 1_4:-4597297 None:intergenic
CATCTTCAACAGGCGTAATT+GGG 0.418349 1_4:-4597958 None:intergenic
AGGAATCTCCTTCACAAGTT+GGG 0.421056 1_4:+4597136 Msa0145000:CDS
CCGAAATACCAGTTATTAGC+TGG 0.425996 1_4:+4597289 Msa0145000:CDS
CAACATGACCATCAATGTAA+TGG 0.430043 1_4:-4597928 None:intergenic
ATAAATGTATGATCAGAAAC+TGG 0.437227 1_4:-4598883 None:intergenic
TGGCGATTACTGGAGGAGTA+TGG 0.439812 1_4:-4598493 None:intergenic
GAAAATCGAAGAGAGTTTCA+TGG 0.443092 1_4:+4594057 Msa0145000:CDS
TCCGGAAGTGATTGAGAAGT+TGG 0.446609 1_4:+4598156 Msa0145000:CDS
CCAATTACGCCTGTTGAAGA+TGG 0.451403 1_4:+4597959 Msa0145000:CDS
CCCACATCCCCATCTTCAAC+AGG 0.453414 1_4:-4597968 None:intergenic
GAGGAATCTCCTTCACAAGT+TGG 0.461742 1_4:+4597135 Msa0145000:CDS
CTCACATGGCAAGTGGTGGC+TGG 0.478796 1_4:+4597695 Msa0145000:CDS
ACAGGAGTAGCAGCAATAGC+TGG 0.488249 1_4:-4598391 None:intergenic
CAATTACGCCTGTTGAAGAT+GGG 0.490357 1_4:+4597960 Msa0145000:CDS
TTCCGAGTTAGATCTTTGTC+AGG 0.491528 1_4:+4594082 Msa0145000:CDS
CAATAATATTCTCAACAATC+CGG 0.493677 1_4:+4598138 Msa0145000:CDS
TGGCCCTCCCATGTTGGAAG+TGG 0.493940 1_4:-4595966 None:intergenic
TTCGTGGATAAATAGCTTCA+AGG 0.494743 1_4:-4597766 None:intergenic
TTGTTGCCTCAAGGAGAAGC+TGG 0.494944 1_4:+4597198 Msa0145000:CDS
TATGATTGTAACTAAGGATG+AGG 0.499183 1_4:+4598972 Msa0145000:three_prime_UTR
GAAGGGCCGATCCTCTTGTT+GGG 0.500523 1_4:+4596286 Msa0145000:CDS
ACTGTATCATAGTTTGATAA+TGG 0.503276 1_4:-4598526 None:intergenic
TCTTACATGGCTGGTGATGT+TGG 0.503583 1_4:+4598751 Msa0145000:three_prime_UTR
AGAAGGGCCGATCCTCTTGT+TGG 0.509208 1_4:+4596285 Msa0145000:CDS
ATGCAGAGTTATAGAGAGAA+GGG 0.518069 1_4:+4596269 Msa0145000:CDS
TTATCTCCTGGTATATTGGA+TGG 0.518348 1_4:+4598001 Msa0145000:CDS
CAGTTAACTGAAGTCTTACA+TGG 0.523109 1_4:+4598738 Msa0145000:exon
ATCTCAGCCACTTCCAACAT+GGG 0.525224 1_4:+4595959 Msa0145000:CDS
ACCTCCGGCTGTGTGAGTAT+AGG 0.526743 1_4:-4598317 None:intergenic
TAGCTGGATTAAACCACCTA+AGG 0.527680 1_4:+4597305 Msa0145000:CDS
GCATGAGTTCCCTCAAATCC+AGG 0.528859 1_4:-4597240 None:intergenic
AGACTCGTACTTTGGAGGAA+TGG 0.532082 1_4:-4597795 None:intergenic
AGAGAAGACTCGTACTTTGG+AGG 0.538641 1_4:-4597800 None:intergenic
CTGATTTGGCCCTCCCATGT+TGG 0.541373 1_4:-4595972 None:intergenic
GGGAGGCCTGGATGCATGCA+AGG 0.544937 1_4:+4598792 Msa0145000:three_prime_UTR
AATAGACCTTGCATGCATCC+AGG 0.546936 1_4:-4598798 None:intergenic
GACGAGGGATTACCTTGTTG+GGG 0.547183 1_4:-4598670 None:intergenic
ACAAGGATGATATCTTTGCT+TGG 0.550411 1_4:-4597179 None:intergenic
AGTTGACAGAAATTCTTGGT+TGG 0.553134 1_4:+4596048 Msa0145000:CDS
GCCTGTTGAAGATGGGGATG+TGG 0.558484 1_4:+4597967 Msa0145000:CDS
TCACACAGCCGGAGGTCAGA+TGG 0.558835 1_4:+4598324 Msa0145000:CDS
GGAGGAATGGAAGATATTCG+TGG 0.560244 1_4:-4597782 None:intergenic
TAACTGAAGTCTTACATGGC+TGG 0.560377 1_4:+4598742 Msa0145000:exon
AATGCAGAGTTATAGAGAGA+AGG 0.560735 1_4:+4596268 Msa0145000:CDS
GATCTCAGCCACTTCCAACA+TGG 0.561348 1_4:+4595958 Msa0145000:CDS
TGAAGATGGGGATGTGGGAG+CGG 0.563372 1_4:+4597973 Msa0145000:CDS
CTAATAACTGGTATTTCGGA+CGG 0.563575 1_4:-4597285 None:intergenic
GGTTAGATTATTCTTATCTG+AGG 0.564458 1_4:+4597116 Msa0145000:intron
CGTCAACTATGTCTACTCAA+TGG 0.565260 1_4:+4598347 Msa0145000:CDS
AGCTTCTCCTTGAGGCAACA+AGG 0.565922 1_4:-4597196 None:intergenic
GTATAAATACATCATCCAGC+TGG 0.566536 1_4:-4599025 None:intergenic
GGAGCGGATACATTATCTCC+TGG 0.567885 1_4:+4597989 Msa0145000:CDS
ACTTGATTAAAGGGATTAGG+AGG 0.568417 1_4:-4598250 None:intergenic
TCGTTAATTTGCCCAACAAG+AGG 0.569074 1_4:-4596297 None:intergenic
TATTGCTGCTACTCCTGTTG+AGG 0.569271 1_4:+4598396 Msa0145000:CDS
TTAATAGTTCCAGAGGATGT+CGG 0.569456 1_4:+4598605 Msa0145000:CDS
TGTCTACTCAATGGCATCGT+AGG 0.571059 1_4:+4598356 Msa0145000:CDS
GCTGGTGCTTGCAGAAGTAT+CGG 0.571164 1_4:+4596019 Msa0145000:CDS
CTGGTTCTGGCGATTACTGG+AGG 0.572380 1_4:-4598500 None:intergenic
AGTATTTGATGAGGATGTAG+TGG 0.572858 1_4:-4598278 None:intergenic
GATATTTGATCAACATCAGA+GGG 0.578943 1_4:+4597733 Msa0145000:CDS
GAATTCAACCCAACTTGTGA+AGG 0.578955 1_4:-4597144 None:intergenic
CACTGTTACGACTATGTCGA+TGG 0.580449 1_4:+4598030 Msa0145000:CDS
AGGATGATATCTTTGCTTGG+AGG 0.580593 1_4:-4597176 None:intergenic
ATATCATCCTTGTTGCCTCA+AGG 0.583248 1_4:+4597189 Msa0145000:CDS
TCTTCCTATACTCACACAGC+CGG 0.583250 1_4:+4598313 Msa0145000:CDS
TGATATATCTTATGCAAGAG+AGG 0.585763 1_4:-4593966 None:intergenic
TGAAAGTAAATTAAAATGGA+CGG 0.587246 1_4:-4599100 None:intergenic
TCGATGCAGTCCTATTTCAG+TGG 0.588300 1_4:+4597892 Msa0145000:intron
AATTTGCCCAACAAGAGGAT+CGG 0.592689 1_4:-4596292 None:intergenic
AAAGAATCACCAAGAAAGAG+AGG 0.593172 1_4:-4598950 None:intergenic
TGAACTATGCATCCCTGACG+AGG 0.599293 1_4:-4598686 None:intergenic
AAGAGCTTGATTCAGCAACA+TGG 0.600253 1_4:+4598448 Msa0145000:CDS
TCAGAACCAGCTTCTCCTTG+AGG 0.604428 1_4:-4597204 None:intergenic
AGTTCCAGAGGATGTCGGAA+TGG 0.612631 1_4:+4598610 Msa0145000:CDS
AGATTGGAGATACCACCAGC+TGG 0.612636 1_4:+4599010 Msa0145000:three_prime_UTR
ATAACTCTGCATTGAGACTG+AGG 0.613768 1_4:-4596258 None:intergenic
AGTTGACGCCATCTGACCTC+CGG 0.616959 1_4:-4598332 None:intergenic
TAAATACATCATCCAGCTGG+TGG 0.620850 1_4:-4599022 None:intergenic
TACCTGACAAAGATCTAACT+CGG 0.627396 1_4:-4594084 None:intergenic
CAGCCACTTCCAACATGGGA+GGG 0.629186 1_4:+4595963 Msa0145000:CDS
TTTGAACCATCCAATATACC+AGG 0.631062 1_4:-4598007 None:intergenic
GAACTATGCATCCCTGACGA+GGG 0.631209 1_4:-4598685 None:intergenic
TGACAAAGATCTAACTCGGA+AGG 0.633363 1_4:-4594080 None:intergenic
CCTGTTGAAGATGGGGATGT+GGG 0.634741 1_4:+4597968 Msa0145000:CDS
TTAGTGAAGAGCAGTGAACA+TGG 0.639897 1_4:+4598091 Msa0145000:CDS
GCTAGATCTCACATGGCAAG+TGG 0.640415 1_4:+4597688 Msa0145000:CDS
GATACTTCTGCAAGCACCAG+CGG 0.641670 1_4:-4596017 None:intergenic
AAATGATGCATCATGCTGAA+AGG 0.642980 1_4:-4598644 None:intergenic
TCAGCCACTTCCAACATGGG+AGG 0.643487 1_4:+4595962 Msa0145000:CDS
GCATCATTTCAGCCCCAACA+AGG 0.644422 1_4:+4598658 Msa0145000:CDS
AGATATTTGATCAACATCAG+AGG 0.644462 1_4:+4597732 Msa0145000:CDS
AGATCTCACATGGCAAGTGG+TGG 0.645516 1_4:+4597691 Msa0145000:CDS
TCCTATACTCACACAGCCGG+AGG 0.650386 1_4:+4598316 Msa0145000:CDS
AGATCGTGCTAGATCTCACA+TGG 0.650447 1_4:+4597681 Msa0145000:intron
AATTACGCCTGTTGAAGATG+GGG 0.658485 1_4:+4597961 Msa0145000:CDS
AACAAGGTAATCCCTCGTCA+GGG 0.664383 1_4:+4598674 Msa0145000:CDS
AATGTATGATCAGAAACTGG+CGG 0.667429 1_4:-4598880 None:intergenic
GCACAGTATGCACAAAACAC+CGG 0.673863 1_4:+4598202 Msa0145000:CDS
TGTGTGAGTATAGGAAGAAG+TGG 0.682691 1_4:-4598308 None:intergenic
GGTGCTTGCAGAAGTATCGG+AGG 0.700785 1_4:+4596022 Msa0145000:CDS
GCGGTGTGTGAAAATATGCG+TGG 0.706081 1_4:+4594029 Msa0145000:exon
AGCTTGATTCAGCAACATGG+AGG 0.714964 1_4:+4598451 Msa0145000:CDS
TGAGTTCCCTCAAATCCAGG+AGG 0.756506 1_4:-4597237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATATATGAAAAAATTA+GGG - chr1_4:4594176-4594195 None:intergenic 10.0%
!! AAGAAATATATGAAAAAATT+AGG - chr1_4:4594177-4594196 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAAAAAC+TGG + chr1_4:4594395-4594414 Msa0145000:intron 10.0%
!! ATTATAAACTAATTCTAATA+TGG - chr1_4:4595090-4595109 None:intergenic 10.0%
!! TTTCTTATTCAAATTATTAT+GGG - chr1_4:4596460-4596479 None:intergenic 10.0%
!! GATAATATTAATAATATATG+TGG - chr1_4:4596651-4596670 None:intergenic 10.0%
!! TTTAAAAATGAATCGATTAT+TGG - chr1_4:4594153-4594172 None:intergenic 15.0%
!!! TAATGTACTAAAAAAGTATA+CGG - chr1_4:4594628-4594647 None:intergenic 15.0%
!!! ATGTTATTTTTTTGGATTTT+TGG - chr1_4:4595531-4595550 None:intergenic 15.0%
!!! TGAAACTAATGTTATTTTTT+TGG - chr1_4:4595539-4595558 None:intergenic 15.0%
!!! AAAAAAATAACATTAGTTTC+AGG + chr1_4:4595538-4595557 Msa0145000:intron 15.0%
!! CTTTCTTATTCAAATTATTA+TGG - chr1_4:4596461-4596480 None:intergenic 15.0%
!! TAATATTTATATTTCAACGT+TGG + chr1_4:4597373-4597392 Msa0145000:intron 15.0%
!! AAAAAAAGAAATATCAAACA+AGG - chr1_4:4597828-4597847 None:intergenic 15.0%
!! AACATGAAAGTAAATTAAAA+TGG - chr1_4:4599107-4599126 None:intergenic 15.0%
!! ATTTACTTTCATGTTAAAAT+TGG + chr1_4:4599112-4599131 Msa0145000:three_prime_UTR 15.0%
!!! AGATATATCAAATACGTTTT+CGG + chr1_4:4593979-4593998 Msa0145000:five_prime_UTR 20.0%
!! ATTTAATGATGAATTACTTG+TGG + chr1_4:4594478-4594497 Msa0145000:intron 20.0%
!!! AAGAAATTGCAATTATTTTG+CGG + chr1_4:4594802-4594821 Msa0145000:intron 20.0%
!! GATTTCTTTAATTAAACTCA+CGG - chr1_4:4595794-4595813 None:intergenic 20.0%
!! TTTATGATTATTGTAGACTA+GGG - chr1_4:4596337-4596356 None:intergenic 20.0%
!!! TTTTATGATTATTGTAGACT+AGG - chr1_4:4596338-4596357 None:intergenic 20.0%
!! ATTATGGGTAATCATAATAA+AGG - chr1_4:4596445-4596464 None:intergenic 20.0%
!! TAAAATATGACAGTAAAAGA+TGG - chr1_4:4596724-4596743 None:intergenic 20.0%
!! TATAACTACAAAAATACCTT+AGG - chr1_4:4597324-4597343 None:intergenic 20.0%
!! AATATTACTGAAGATTACTA+TGG - chr1_4:4597360-4597379 None:intergenic 20.0%
!! TCATAACTCGAAAAAAAAAA+AGG + chr1_4:4597591-4597610 Msa0145000:intron 20.0%
!! AGAATATTATTGAGTAATTC+AGG - chr1_4:4598130-4598149 None:intergenic 20.0%
!! GAACTATTAAAAAAGATACA+AGG - chr1_4:4598595-4598614 None:intergenic 20.0%
!! ATTCTTTATGATTGTAACTA+AGG + chr1_4:4598966-4598985 Msa0145000:three_prime_UTR 20.0%
!! TGAAAGTAAATTAAAATGGA+CGG - chr1_4:4599103-4599122 None:intergenic 20.0%
!!! CTGTATATTCTATTGTTTTG+TGG + chr1_4:4594007-4594026 Msa0145000:five_prime_UTR 25.0%
!!! TATATTCTATTGTTTTGTGG+CGG + chr1_4:4594010-4594029 Msa0145000:five_prime_UTR 25.0%
! AATTTACATGCAAAGCTAAA+AGG - chr1_4:4594266-4594285 None:intergenic 25.0%
! TAAGGAAGTTAAGATGTATT+TGG + chr1_4:4594441-4594460 Msa0145000:intron 25.0%
! AAGGAAGTTAAGATGTATTT+GGG + chr1_4:4594442-4594461 Msa0145000:intron 25.0%
!! GTTAATTGGATTAGATTAGA+TGG + chr1_4:4594865-4594884 Msa0145000:intron 25.0%
! ATGCTGAAGATATTTATCAA+AGG - chr1_4:4595048-4595067 None:intergenic 25.0%
! TTCAAAGTAACTTCATTGAA+TGG - chr1_4:4595143-4595162 None:intergenic 25.0%
! ACTAATGTCCAATCATAAAA+AGG - chr1_4:4595189-4595208 None:intergenic 25.0%
!!! AGATTTTTAACTTTCCACAA+TGG + chr1_4:4595343-4595362 Msa0145000:intron 25.0%
! AAAACTAGTATTATCAATGG+TGG - chr1_4:4595377-4595396 None:intergenic 25.0%
! TGGAAAACTAGTATTATCAA+TGG - chr1_4:4595380-4595399 None:intergenic 25.0%
! ATCGAAAAATGCAACTAAAT+TGG - chr1_4:4595588-4595607 None:intergenic 25.0%
!! TTTGAGAATTTTTATGCTGT+TGG + chr1_4:4595609-4595628 Msa0145000:intron 25.0%
!! TACTGTTAGTAAGGATATTT+TGG + chr1_4:4595840-4595859 Msa0145000:intron 25.0%
!! TGTTCTTTTTCTGTTTCAAA+AGG + chr1_4:4595922-4595941 Msa0145000:intron 25.0%
!!! TTTTGAAAAAGCTTGCAATT+TGG + chr1_4:4596190-4596209 Msa0145000:intron 25.0%
!!! ATCTGTTTTCACTTTTAATC+AGG + chr1_4:4596221-4596240 Msa0145000:intron 25.0%
!! TTTTAATCAGGATCTTAACT+TGG + chr1_4:4596233-4596252 Msa0145000:intron 25.0%
! TTATGATTATTGTAGACTAG+GGG - chr1_4:4596336-4596355 None:intergenic 25.0%
! ATTCATACTAGATACTTAGA+AGG - chr1_4:4596391-4596410 None:intergenic 25.0%
! AGTATCTAGTATGAATCTTA+TGG + chr1_4:4596395-4596414 Msa0145000:intron 25.0%
! TATTTATTGTGCGTTCAAAA+TGG + chr1_4:4596513-4596532 Msa0145000:intron 25.0%
! CAAAATGGCTATAAATATTC+TGG + chr1_4:4596528-4596547 Msa0145000:intron 25.0%
!!! CTTTTACTGTCATATTTTAG+TGG + chr1_4:4596725-4596744 Msa0145000:intron 25.0%
!! ACAAAGAAATAAACAGGTTT+TGG - chr1_4:4596844-4596863 None:intergenic 25.0%
! GTACTTTATAATGAACATCT+GGG - chr1_4:4597046-4597065 None:intergenic 25.0%
! TGTACTTTATAATGAACATC+TGG - chr1_4:4597047-4597066 None:intergenic 25.0%
!!! CATATTATAAGAGTGCTAAA+AGG + chr1_4:4597065-4597084 Msa0145000:intron 25.0%
! ATCTAACCTATTCAACAAAA+AGG - chr1_4:4597104-4597123 None:intergenic 25.0%
! CAATAATATTCTCAACAATC+CGG + chr1_4:4598138-4598157 Msa0145000:CDS 25.0%
!!! AAAAACATTTGATGATGATC+CGG - chr1_4:4598224-4598243 None:intergenic 25.0%
!! AGTTTACATCTTTTGTTGAA+GGG - chr1_4:4598423-4598442 None:intergenic 25.0%
!! TAGTTTACATCTTTTGTTGA+AGG - chr1_4:4598424-4598443 None:intergenic 25.0%
! ACTGTATCATAGTTTGATAA+TGG - chr1_4:4598529-4598548 None:intergenic 25.0%
!!! ATCTTTTTTAATAGTTCCAG+AGG + chr1_4:4598598-4598617 Msa0145000:CDS 25.0%
! TAGTTCAAAGAGAATGAAAA+TGG + chr1_4:4598702-4598721 Msa0145000:CDS 25.0%
!! TTAGCGTTTTATATGATAGT+TGG + chr1_4:4598841-4598860 Msa0145000:three_prime_UTR 25.0%
! ATAAATGTATGATCAGAAAC+TGG - chr1_4:4598886-4598905 None:intergenic 25.0%
!!! TCTCTTTTTTTACATTCTGA+CGG + chr1_4:4599058-4599077 Msa0145000:three_prime_UTR 25.0%
! CATGTTAAAATTGGCATAAA+TGG + chr1_4:4599121-4599140 Msa0145000:three_prime_UTR 25.0%
TGATATATCTTATGCAAGAG+AGG - chr1_4:4593969-4593988 None:intergenic 30.0%
CGATTATTGGAAGTGATTAT+TGG - chr1_4:4594140-4594159 None:intergenic 30.0%
GATTAGATGATTGATGAAGT+TGG - chr1_4:4594209-4594228 None:intergenic 30.0%
! TTAATCAGGAAATTTTCCTC+TGG - chr1_4:4594233-4594252 None:intergenic 30.0%
AATTTCCTGATTAATCCGAT+CGG + chr1_4:4594239-4594258 Msa0145000:intron 30.0%
!! TTAGCTTTGCATGTAAATTC+AGG + chr1_4:4594267-4594286 Msa0145000:intron 30.0%
AAAAGTAGACTACACTGATA+AGG + chr1_4:4594423-4594442 Msa0145000:intron 30.0%
! AGTTAAGATGTATTTGGGAT+TGG + chr1_4:4594447-4594466 Msa0145000:intron 30.0%
TCCCTAATGAGTATTTATCT+GGG + chr1_4:4594511-4594530 Msa0145000:intron 30.0%
ACCCAGATAAATACTCATTA+GGG - chr1_4:4594515-4594534 None:intergenic 30.0%
AACCCAGATAAATACTCATT+AGG - chr1_4:4594516-4594535 None:intergenic 30.0%
TAATGAGTATTTATCTGGGT+TGG + chr1_4:4594515-4594534 Msa0145000:intron 30.0%
AAAACTTATCCCACTAAGTA+GGG - chr1_4:4594677-4594696 None:intergenic 30.0%
TTTCTATACGCGAAAATACA+TGG - chr1_4:4594731-4594750 None:intergenic 30.0%
! TTTTGAATTGAGACTTCTGA+CGG + chr1_4:4594757-4594776 Msa0145000:intron 30.0%
TTGCAATTTCTTGAAAGACT+AGG - chr1_4:4594794-4594813 None:intergenic 30.0%
! CTTTCAGTTTTCTTTGTCTT+GGG + chr1_4:4594837-4594856 Msa0145000:intron 30.0%
! TTTCAGTTTTCTTTGTCTTG+GGG + chr1_4:4594838-4594857 Msa0145000:intron 30.0%
! TTGTGGGTTATTAGTGTATT+TGG + chr1_4:4594931-4594950 Msa0145000:intron 30.0%
CAGCATATATGCAAAAATGT+AGG + chr1_4:4595062-4595081 Msa0145000:intron 30.0%
!!! TCTGTTAGCCTTTTTATGAT+TGG + chr1_4:4595178-4595197 Msa0145000:intron 30.0%
TAGTCAGTGTTGTCAAATAT+TGG + chr1_4:4595228-4595247 Msa0145000:intron 30.0%
! TTGTCAAATATTGGCTATGA+CGG + chr1_4:4595237-4595256 Msa0145000:intron 30.0%
!!! CAGCTCTATCTTTTAAAACT+TGG - chr1_4:4595306-4595325 None:intergenic 30.0%
AAGAACACACTAAGAAGAAA+TGG - chr1_4:4595400-4595419 None:intergenic 30.0%
TTGTATTATCTCTTTGTACG+TGG + chr1_4:4595447-4595466 Msa0145000:intron 30.0%
AGCAATTACTTTACTAGAAC+AGG - chr1_4:4595491-4595510 None:intergenic 30.0%
AAATGCAACTAAATTGGACA+GGG - chr1_4:4595582-4595601 None:intergenic 30.0%
AAAATGCAACTAAATTGGAC+AGG - chr1_4:4595583-4595602 None:intergenic 30.0%
AAGCGAAAAGATCAGATATT+CGG - chr1_4:4595704-4595723 None:intergenic 30.0%
GAATTCGTATGAACAAAACA+AGG - chr1_4:4595727-4595746 None:intergenic 30.0%
GTAATATCAGCGAAAACAAA+AGG - chr1_4:4595823-4595842 None:intergenic 30.0%
! CAGAAAATATCACACTGATT+TGG - chr1_4:4595989-4596008 None:intergenic 30.0%
! CAAATCAGTGTGATATTTTC+TGG + chr1_4:4595987-4596006 Msa0145000:CDS 30.0%
GTAAAGTTGACAGAAATTCT+TGG + chr1_4:4596044-4596063 Msa0145000:CDS 30.0%
! GTTGTCTGAAGTGAATTAAT+TGG - chr1_4:4596078-4596097 None:intergenic 30.0%
!! TAGTAGAAGATATTGATTCC+TGG + chr1_4:4596365-4596384 Msa0145000:intron 30.0%
TCTAGTATGAATCTTATGGA+TGG + chr1_4:4596399-4596418 Msa0145000:intron 30.0%
!! ATAAGAGTGCTAAAAGGAAA+AGG + chr1_4:4597071-4597090 Msa0145000:intron 30.0%
! CTGTTTCCTTTTTGTTGAAT+AGG + chr1_4:4597095-4597114 Msa0145000:intron 30.0%
GGTTAGATTATTCTTATCTG+AGG + chr1_4:4597116-4597135 Msa0145000:intron 30.0%
AACTACAAAAATACCTTAGG+TGG - chr1_4:4597321-4597340 None:intergenic 30.0%
TGTCAAACCTATGTATATAG+CGG + chr1_4:4597457-4597476 Msa0145000:intron 30.0%
GAAAAAACCGCTATATACAT+AGG - chr1_4:4597467-4597486 None:intergenic 30.0%
AGTATGCCAATATATCATCA+GGG + chr1_4:4597517-4597536 Msa0145000:intron 30.0%
TACATACCCTGATGATATAT+TGG - chr1_4:4597526-4597545 None:intergenic 30.0%
!! GTATGTATTTCTAGGTTGTT+GGG + chr1_4:4597539-4597558 Msa0145000:intron 30.0%
AGATATTTGATCAACATCAG+AGG + chr1_4:4597732-4597751 Msa0145000:CDS 30.0%
GATATTTGATCAACATCAGA+GGG + chr1_4:4597733-4597752 Msa0145000:CDS 30.0%
AACATGACCATCAATGTAAT+GGG - chr1_4:4597930-4597949 None:intergenic 30.0%
TACATTATCTCCTGGTATAT+TGG + chr1_4:4597997-4598016 Msa0145000:CDS 30.0%
TCAACTTGATTAAAGGGATT+AGG - chr1_4:4598256-4598275 None:intergenic 30.0%
!! GGATGAAAAAGTATTTGATG+AGG - chr1_4:4598290-4598309 None:intergenic 30.0%
!!! GTACACAATTTTAGAGCAAA+AGG + chr1_4:4598547-4598566 Msa0145000:CDS 30.0%
!!! TTGGTTGCCATTTATTTTGA+TGG + chr1_4:4598770-4598789 Msa0145000:three_prime_UTR 30.0%
!!! TGGTTGCCATTTATTTTGAT+GGG + chr1_4:4598771-4598790 Msa0145000:three_prime_UTR 30.0%
GGTCTATTACACATTTGATA+TGG + chr1_4:4598813-4598832 Msa0145000:three_prime_UTR 30.0%
TATGATTGTAACTAAGGATG+AGG + chr1_4:4598972-4598991 Msa0145000:three_prime_UTR 30.0%
!! GTTTTGATGTTGTAACAGAT+TGG + chr1_4:4598994-4599013 Msa0145000:three_prime_UTR 30.0%
GAAAATCGAAGAGAGTTTCA+TGG + chr1_4:4594057-4594076 Msa0145000:CDS 35.0%
TACCTGACAAAGATCTAACT+CGG - chr1_4:4594087-4594106 None:intergenic 35.0%
ATCAATCATCTAATCTCCAG+AGG + chr1_4:4594214-4594233 Msa0145000:intron 35.0%
CTCCCTAATGAGTATTTATC+TGG + chr1_4:4594510-4594529 Msa0145000:intron 35.0%
CAAAACTTATCCCACTAAGT+AGG - chr1_4:4594678-4594697 None:intergenic 35.0%
! CTACTTAGTGGGATAAGTTT+TGG + chr1_4:4594676-4594695 Msa0145000:intron 35.0%
TTTGAATTGAGACTTCTGAC+GGG + chr1_4:4594758-4594777 Msa0145000:intron 35.0%
! GCTTTCAGTTTTCTTTGTCT+TGG + chr1_4:4594836-4594855 Msa0145000:intron 35.0%
GGATTAGATTAGATGGTGAA+TGG + chr1_4:4594872-4594891 Msa0145000:intron 35.0%
ACAAAAATATAGCGCGTGTT+TGG - chr1_4:4595005-4595024 None:intergenic 35.0%
ATGTTGTCAAAAAACGTGCA+CGG - chr1_4:4595278-4595297 None:intergenic 35.0%
TTTAAAAGATAGAGCTGCTG+TGG + chr1_4:4595309-4595328 Msa0145000:intron 35.0%
! CTAGTATTATCAATGGTGGA+TGG - chr1_4:4595373-4595392 None:intergenic 35.0%
TTCTTCTTAGTGTGTTCTTG+TGG + chr1_4:4595401-4595420 Msa0145000:intron 35.0%
AGCGAAAAGATCAGATATTC+GGG - chr1_4:4595703-4595722 None:intergenic 35.0%
CGCTGATATTACTGTTAGTA+AGG + chr1_4:4595831-4595850 Msa0145000:intron 35.0%
!!! GGATATTTTGGTGTTCAAAC+AGG + chr1_4:4595852-4595871 Msa0145000:intron 35.0%
AGTTGACAGAAATTCTTGGT+TGG + chr1_4:4596048-4596067 Msa0145000:CDS 35.0%
TTATATAGCCTCACTATGAC+AGG - chr1_4:4596102-4596121 None:intergenic 35.0%
GAGGCTATATAAGTTGCAAT+TGG + chr1_4:4596110-4596129 Msa0145000:intron 35.0%
TGGTCTTTATTCTCTAACAC+TGG + chr1_4:4596130-4596149 Msa0145000:intron 35.0%
GGTCTTTATTCTCTAACACT+GGG + chr1_4:4596131-4596150 Msa0145000:intron 35.0%
TTTATTCTCTAACACTGGGA+TGG + chr1_4:4596135-4596154 Msa0145000:intron 35.0%
AATGCAGAGTTATAGAGAGA+AGG + chr1_4:4596268-4596287 Msa0145000:CDS 35.0%
ATGCAGAGTTATAGAGAGAA+GGG + chr1_4:4596269-4596288 Msa0145000:CDS 35.0%
!!! AAACAGGTTTTGGATGAAAG+TGG - chr1_4:4596834-4596853 None:intergenic 35.0%
CACAGCACAAAGAAATAAAC+AGG - chr1_4:4596850-4596869 None:intergenic 35.0%
ACAAGGATGATATCTTTGCT+TGG - chr1_4:4597182-4597201 None:intergenic 35.0%
! TCTGATGATATTTTACCTCC+TGG + chr1_4:4597222-4597241 Msa0145000:CDS 35.0%
! TATTTTACCTCCTGGATTTG+AGG + chr1_4:4597230-4597249 Msa0145000:CDS 35.0%
! ATTTTACCTCCTGGATTTGA+GGG + chr1_4:4597231-4597250 Msa0145000:CDS 35.0%
CTAATAACTGGTATTTCGGA+CGG - chr1_4:4597288-4597307 None:intergenic 35.0%
CCAGCTAATAACTGGTATTT+CGG - chr1_4:4597292-4597311 None:intergenic 35.0%
GGTTTAATCCAGCTAATAAC+TGG - chr1_4:4597300-4597319 None:intergenic 35.0%
CAGTATGCCAATATATCATC+AGG + chr1_4:4597516-4597535 Msa0145000:intron 35.0%
TCATCAGGGTATGTATTTCT+AGG + chr1_4:4597531-4597550 Msa0145000:intron 35.0%
!! GGTATGTATTTCTAGGTTGT+TGG + chr1_4:4597538-4597557 Msa0145000:intron 35.0%
TTCGTGGATAAATAGCTTCA+AGG - chr1_4:4597769-4597788 None:intergenic 35.0%
CAACATGACCATCAATGTAA+TGG - chr1_4:4597931-4597950 None:intergenic 35.0%
TTATCTCCTGGTATATTGGA+TGG + chr1_4:4598001-4598020 Msa0145000:CDS 35.0%
TTTGAACCATCCAATATACC+AGG - chr1_4:4598010-4598029 None:intergenic 35.0%
ACTTGATTAAAGGGATTAGG+AGG - chr1_4:4598253-4598272 None:intergenic 35.0%
GTGGTCTCAACTTGATTAAA+GGG - chr1_4:4598262-4598281 None:intergenic 35.0%
AGTGGTCTCAACTTGATTAA+AGG - chr1_4:4598263-4598282 None:intergenic 35.0%
AGTATTTGATGAGGATGTAG+TGG - chr1_4:4598281-4598300 None:intergenic 35.0%
!! CATAGTTTGATAATGGTTGC+TGG - chr1_4:4598522-4598541 None:intergenic 35.0%
!! ATACAAGGCTTCGTTGTTTT+TGG - chr1_4:4598580-4598599 None:intergenic 35.0%
TTAATAGTTCCAGAGGATGT+CGG + chr1_4:4598605-4598624 Msa0145000:CDS 35.0%
AAATGATGCATCATGCTGAA+AGG - chr1_4:4598647-4598666 None:intergenic 35.0%
CAGTTAACTGAAGTCTTACA+TGG + chr1_4:4598738-4598757 Msa0145000:exon 35.0%
!!! GGTTGCCATTTATTTTGATG+GGG + chr1_4:4598772-4598791 Msa0145000:three_prime_UTR 35.0%
AATGTATGATCAGAAACTGG+CGG - chr1_4:4598883-4598902 None:intergenic 35.0%
AAAGAATCACCAAGAAAGAG+AGG - chr1_4:4598953-4598972 None:intergenic 35.0%
GTATAAATACATCATCCAGC+TGG - chr1_4:4599028-4599047 None:intergenic 35.0%
TGACAAAGATCTAACTCGGA+AGG - chr1_4:4594083-4594102 None:intergenic 40.0%
TTCCGAGTTAGATCTTTGTC+AGG + chr1_4:4594082-4594101 Msa0145000:CDS 40.0%
GTCTTGTGCTGTGTAATCTT+TGG + chr1_4:4594557-4594576 Msa0145000:intron 40.0%
!! CTTAGTGGGATAAGTTTTGG+TGG + chr1_4:4594679-4594698 Msa0145000:intron 40.0%
! GACAACACTGACTAACACTA+CGG - chr1_4:4595222-4595241 None:intergenic 40.0%
!! GTATTATCAATGGTGGATGG+TGG - chr1_4:4595370-4595389 None:intergenic 40.0%
TGTTCTTGTGGTTGTTAACC+AGG + chr1_4:4595413-4595432 Msa0145000:intron 40.0%
AATACAAAGCATAAGCAGCC+TGG - chr1_4:4595434-4595453 None:intergenic 40.0%
ACTTGAAACCACACTAACAC+CGG - chr1_4:4595768-4595787 None:intergenic 40.0%
!!! TTTTGGTGTTCAAACAGGCT+TGG + chr1_4:4595857-4595876 Msa0145000:intron 40.0%
ATAACTCTGCATTGAGACTG+AGG - chr1_4:4596261-4596280 None:intergenic 40.0%
AATTTGCCCAACAAGAGGAT+CGG - chr1_4:4596295-4596314 None:intergenic 40.0%
!! TCGTTAATTTGCCCAACAAG+AGG - chr1_4:4596300-4596319 None:intergenic 40.0%
TACTAGATACTTAGAAGGCC+AGG - chr1_4:4596386-4596405 None:intergenic 40.0%
! CTTTGTGCTGTGAGTTTTTG+TGG + chr1_4:4596858-4596877 Msa0145000:intron 40.0%
AGGAATCTCCTTCACAAGTT+GGG + chr1_4:4597136-4597155 Msa0145000:CDS 40.0%
GAATTCAACCCAACTTGTGA+AGG - chr1_4:4597147-4597166 None:intergenic 40.0%
AGGATGATATCTTTGCTTGG+AGG - chr1_4:4597179-4597198 None:intergenic 40.0%
ATATCATCCTTGTTGCCTCA+AGG + chr1_4:4597189-4597208 Msa0145000:CDS 40.0%
CCGAAATACCAGTTATTAGC+TGG + chr1_4:4597289-4597308 Msa0145000:CDS 40.0%
TAGCTGGATTAAACCACCTA+AGG + chr1_4:4597305-4597324 Msa0145000:CDS 40.0%
ACGTTGGTGCAAGAAAGTAA+AGG + chr1_4:4597389-4597408 Msa0145000:intron 40.0%
TCGTCAACATCCACTGAAAT+AGG - chr1_4:4597905-4597924 None:intergenic 40.0%
GACGATTCCCATTACATTGA+TGG + chr1_4:4597920-4597939 Msa0145000:CDS 40.0%
CATCTTCAACAGGCGTAATT+GGG - chr1_4:4597961-4597980 None:intergenic 40.0%
CAATTACGCCTGTTGAAGAT+GGG + chr1_4:4597960-4597979 Msa0145000:CDS 40.0%
AATTACGCCTGTTGAAGATG+GGG + chr1_4:4597961-4597980 Msa0145000:CDS 40.0%
TTAGTGAAGAGCAGTGAACA+TGG + chr1_4:4598091-4598110 Msa0145000:CDS 40.0%
ACCAACTTCTCAATCACTTC+CGG - chr1_4:4598160-4598179 None:intergenic 40.0%
TGTGTGAGTATAGGAAGAAG+TGG - chr1_4:4598311-4598330 None:intergenic 40.0%
CGTCAACTATGTCTACTCAA+TGG + chr1_4:4598347-4598366 Msa0145000:CDS 40.0%
AAGAGCTTGATTCAGCAACA+TGG + chr1_4:4598448-4598467 Msa0145000:CDS 40.0%
!! TTGATAATGGTTGCTGGTTC+TGG - chr1_4:4598516-4598535 None:intergenic 40.0%
TAACTGAAGTCTTACATGGC+TGG + chr1_4:4598742-4598761 Msa0145000:exon 40.0%
!!! TGCCATTTATTTTGATGGGG+AGG + chr1_4:4598775-4598794 Msa0145000:three_prime_UTR 40.0%
TAAATACATCATCCAGCTGG+TGG - chr1_4:4599025-4599044 None:intergenic 40.0%
AAGGTCCGATCGGATTAATC+AGG - chr1_4:4594247-4594266 None:intergenic 45.0%
GCAAAGCTAAAAGGTCCGAT+CGG - chr1_4:4594257-4594276 None:intergenic 45.0%
ATGTAGCCAACCCTACTTAG+TGG + chr1_4:4594664-4594683 Msa0145000:intron 45.0%
TGTAGCCAACCCTACTTAGT+GGG + chr1_4:4594665-4594684 Msa0145000:intron 45.0%
CTTATCCCACTAAGTAGGGT+TGG - chr1_4:4594673-4594692 None:intergenic 45.0%
! CAGTTTTCTTTGTCTTGGGG+TGG + chr1_4:4594841-4594860 Msa0145000:intron 45.0%
! TGTCTTGGGGTGGTGTTAAT+TGG + chr1_4:4594851-4594870 Msa0145000:intron 45.0%
TGTATGAGCAACTGCTCTTG+TGG + chr1_4:4594914-4594933 Msa0145000:intron 45.0%
GTATGAGCAACTGCTCTTGT+GGG + chr1_4:4594915-4594934 Msa0145000:intron 45.0%
!! TTTCAGGTTCCAACGACATG+TGG + chr1_4:4595554-4595573 Msa0145000:intron 45.0%
AAAAAGCCAACCCCACATAG+TGG + chr1_4:4595647-4595666 Msa0145000:intron 45.0%
AAAAGCCAACCCCACATAGT+GGG + chr1_4:4595648-4595667 Msa0145000:intron 45.0%
! AAGCCTTATCCCACTATGTG+GGG - chr1_4:4595660-4595679 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG - chr1_4:4595661-4595680 None:intergenic 45.0%
CTGTTGCTCATGTGTTAGAC+CGG + chr1_4:4595746-4595765 Msa0145000:intron 45.0%
ATCTCAGCCACTTCCAACAT+GGG + chr1_4:4595959-4595978 Msa0145000:CDS 45.0%
!! ATTTTCTGGAGATGTACCGC+TGG + chr1_4:4596001-4596020 Msa0145000:CDS 45.0%
AGACAACACCTGTCATAGTG+AGG + chr1_4:4596091-4596110 Msa0145000:intron 45.0%
AAGGTCTCGGGATCTGATTA+GGG + chr1_4:4596165-4596184 Msa0145000:intron 45.0%
! AGCACAAAGAGTGCAAGGAA+AGG - chr1_4:4596910-4596929 None:intergenic 45.0%
TTCCTTGCACTCTTTGTGCT+TGG + chr1_4:4596910-4596929 Msa0145000:intron 45.0%
! AACCAAGCACAAAGAGTGCA+AGG - chr1_4:4596915-4596934 None:intergenic 45.0%
TGCACTCTTTGTGCTTGGTT+AGG + chr1_4:4596915-4596934 Msa0145000:intron 45.0%
TAGACTCTCAAGTGCATGCA+TGG - chr1_4:4596987-4597006 None:intergenic 45.0%
GAGGAATCTCCTTCACAAGT+TGG + chr1_4:4597135-4597154 Msa0145000:CDS 45.0%
AGATCGTGCTAGATCTCACA+TGG + chr1_4:4597681-4597700 Msa0145000:intron 45.0%
GGAGGAATGGAAGATATTCG+TGG - chr1_4:4597785-4597804 None:intergenic 45.0%
! AGACTCGTACTTTGGAGGAA+TGG - chr1_4:4597798-4597817 None:intergenic 45.0%
AGAGAAGACTCGTACTTTGG+AGG - chr1_4:4597803-4597822 None:intergenic 45.0%
GCAAGAGAAGACTCGTACTT+TGG - chr1_4:4597806-4597825 None:intergenic 45.0%
AATAGGACTGCATCGAAGGA+AGG - chr1_4:4597888-4597907 None:intergenic 45.0%
CTGAAATAGGACTGCATCGA+AGG - chr1_4:4597892-4597911 None:intergenic 45.0%
TCGATGCAGTCCTATTTCAG+TGG + chr1_4:4597892-4597911 Msa0145000:intron 45.0%
CCATCTTCAACAGGCGTAAT+TGG - chr1_4:4597962-4597981 None:intergenic 45.0%
CCAATTACGCCTGTTGAAGA+TGG + chr1_4:4597959-4597978 Msa0145000:CDS 45.0%
CACTGTTACGACTATGTCGA+TGG + chr1_4:4598030-4598049 Msa0145000:CDS 45.0%
!! GCTGCATCTGTTGCTTTAAC+TGG + chr1_4:4598067-4598086 Msa0145000:CDS 45.0%
TCCGGAAGTGATTGAGAAGT+TGG + chr1_4:4598156-4598175 Msa0145000:CDS 45.0%
GCACAGTATGCACAAAACAC+CGG + chr1_4:4598202-4598221 Msa0145000:CDS 45.0%
TCTTCCTATACTCACACAGC+CGG + chr1_4:4598313-4598332 Msa0145000:CDS 45.0%
TGTCTACTCAATGGCATCGT+AGG + chr1_4:4598356-4598375 Msa0145000:CDS 45.0%
! GCAATAGCTGGACTGATTTC+AGG - chr1_4:4598382-4598401 None:intergenic 45.0%
TATTGCTGCTACTCCTGTTG+AGG + chr1_4:4598396-4598415 Msa0145000:CDS 45.0%
TTTGTTGAAGGGACCTCAAC+AGG - chr1_4:4598412-4598431 None:intergenic 45.0%
AGCTTGATTCAGCAACATGG+AGG + chr1_4:4598451-4598470 Msa0145000:CDS 45.0%
TGACGAGGGATTACCTTGTT+GGG - chr1_4:4598674-4598693 None:intergenic 45.0%
AACAAGGTAATCCCTCGTCA+GGG + chr1_4:4598674-4598693 Msa0145000:CDS 45.0%
! TCTTACATGGCTGGTGATGT+TGG + chr1_4:4598751-4598770 Msa0145000:three_prime_UTR 45.0%
GGCCTCCCCATCAAAATAAA+TGG - chr1_4:4598780-4598799 None:intergenic 45.0%
!!! TTTATTTTGATGGGGAGGCC+TGG + chr1_4:4598780-4598799 Msa0145000:three_prime_UTR 45.0%
AATAGACCTTGCATGCATCC+AGG - chr1_4:4598801-4598820 None:intergenic 45.0%
CAGAAACTGGCGGCAAATTA+GGG - chr1_4:4598873-4598892 None:intergenic 45.0%
TCAGAAACTGGCGGCAAATT+AGG - chr1_4:4598874-4598893 None:intergenic 45.0%
!! TTTATTTATATATATTATCT+TGG + chr1_4:4596940-4596959 Msa0145000:intron 5.0%
GCGGTGTGTGAAAATATGCG+TGG + chr1_4:4594029-4594048 Msa0145000:exon 50.0%
CTTATCCCACTATGTGGGGT+TGG - chr1_4:4595656-4595675 None:intergenic 50.0%
! CAACCCCACATAGTGGGATA+AGG + chr1_4:4595654-4595673 Msa0145000:intron 50.0%
! CCAAGCCTTATCCCACTATG+TGG - chr1_4:4595662-4595681 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG + chr1_4:4595659-4595678 Msa0145000:intron 50.0%
! GTGGGATAAGGCTTGGTTGT+TGG + chr1_4:4595666-4595685 Msa0145000:intron 50.0%
! GTGTTAGACCGGTGTTAGTG+TGG + chr1_4:4595757-4595776 Msa0145000:intron 50.0%
GATCTCAGCCACTTCCAACA+TGG + chr1_4:4595958-4595977 Msa0145000:CDS 50.0%
GATACTTCTGCAAGCACCAG+CGG - chr1_4:4596020-4596039 None:intergenic 50.0%
! GCTGGTGCTTGCAGAAGTAT+CGG + chr1_4:4596019-4596038 Msa0145000:CDS 50.0%
TCTCTAACACTGGGATGGAG+AGG + chr1_4:4596140-4596159 Msa0145000:intron 50.0%
GAAGGTCTCGGGATCTGATT+AGG + chr1_4:4596164-4596183 Msa0145000:intron 50.0%
ACTCTCAAGTGCATGCATGG+TGG - chr1_4:4596984-4597003 None:intergenic 50.0%
AGCTTCTCCTTGAGGCAACA+AGG - chr1_4:4597199-4597218 None:intergenic 50.0%
TTGTTGCCTCAAGGAGAAGC+TGG + chr1_4:4597198-4597217 Msa0145000:CDS 50.0%
TCAGAACCAGCTTCTCCTTG+AGG - chr1_4:4597207-4597226 None:intergenic 50.0%
TGAGTTCCCTCAAATCCAGG+AGG - chr1_4:4597240-4597259 None:intergenic 50.0%
GCATGAGTTCCCTCAAATCC+AGG - chr1_4:4597243-4597262 None:intergenic 50.0%
GCTAGATCTCACATGGCAAG+TGG + chr1_4:4597688-4597707 Msa0145000:CDS 50.0%
AGATCTCACATGGCAAGTGG+TGG + chr1_4:4597691-4597710 Msa0145000:CDS 50.0%
CCTGTTGAAGATGGGGATGT+GGG + chr1_4:4597968-4597987 Msa0145000:CDS 50.0%
GGAGCGGATACATTATCTCC+TGG + chr1_4:4597989-4598008 Msa0145000:CDS 50.0%
ACAGGAGTAGCAGCAATAGC+TGG - chr1_4:4598394-4598413 None:intergenic 50.0%
TGGCGATTACTGGAGGAGTA+TGG - chr1_4:4598496-4598515 None:intergenic 50.0%
!! TTGCTGGTTCTGGCGATTAC+TGG - chr1_4:4598506-4598525 None:intergenic 50.0%
AGTTCCAGAGGATGTCGGAA+TGG + chr1_4:4598610-4598629 Msa0145000:CDS 50.0%
GCATCATTTCAGCCCCAACA+AGG + chr1_4:4598658-4598677 Msa0145000:CDS 50.0%
GACGAGGGATTACCTTGTTG+GGG - chr1_4:4598673-4598692 None:intergenic 50.0%
CTGACGAGGGATTACCTTGT+TGG - chr1_4:4598675-4598694 None:intergenic 50.0%
CAACAAGGTAATCCCTCGTC+AGG + chr1_4:4598673-4598692 Msa0145000:CDS 50.0%
GAACTATGCATCCCTGACGA+GGG - chr1_4:4598688-4598707 None:intergenic 50.0%
TGAACTATGCATCCCTGACG+AGG - chr1_4:4598689-4598708 None:intergenic 50.0%
! GCTGCAGATTTTCGGTCATG+AGG - chr1_4:4598928-4598947 None:intergenic 50.0%
! GAGAGGCAGCTGCAGATTTT+CGG - chr1_4:4598936-4598955 None:intergenic 50.0%
AGATTGGAGATACCACCAGC+TGG + chr1_4:4599010-4599029 Msa0145000:three_prime_UTR 50.0%
ACGCACACCAATGCCAATGC+AGG + chr1_4:4594978-4594997 Msa0145000:intron 55.0%
CGCACACCAATGCCAATGCA+GGG + chr1_4:4594979-4594998 Msa0145000:intron 55.0%
! GTTTGGCCCTGCATTGGCAT+TGG - chr1_4:4594988-4595007 None:intergenic 55.0%
! TATTGGCTATGACGGCGCCA+TGG + chr1_4:4595245-4595264 Msa0145000:intron 55.0%
ACGTGCACGGAAATCCTCCA+TGG - chr1_4:4595265-4595284 None:intergenic 55.0%
! TGGTGGATGGTGGTCCATTG+TGG - chr1_4:4595360-4595379 None:intergenic 55.0%
GACAGGGAACCACATGTCGT+TGG - chr1_4:4595566-4595585 None:intergenic 55.0%
TCAGCCACTTCCAACATGGG+AGG + chr1_4:4595962-4595981 Msa0145000:CDS 55.0%
CAGCCACTTCCAACATGGGA+GGG + chr1_4:4595963-4595982 Msa0145000:CDS 55.0%
!! CTGATTTGGCCCTCCCATGT+TGG - chr1_4:4595975-4595994 None:intergenic 55.0%
!! GGTGCTTGCAGAAGTATCGG+AGG + chr1_4:4596022-4596041 Msa0145000:CDS 55.0%
ACACTGGGATGGAGAGGTGA+AGG + chr1_4:4596146-4596165 Msa0145000:intron 55.0%
GGATGGAGAGGTGAAGGTCT+CGG + chr1_4:4596152-4596171 Msa0145000:intron 55.0%
GATGGAGAGGTGAAGGTCTC+GGG + chr1_4:4596153-4596172 Msa0145000:intron 55.0%
AGAAGGGCCGATCCTCTTGT+TGG + chr1_4:4596285-4596304 Msa0145000:CDS 55.0%
GAAGGGCCGATCCTCTTGTT+GGG + chr1_4:4596286-4596305 Msa0145000:CDS 55.0%
GCCTGTTGAAGATGGGGATG+TGG + chr1_4:4597967-4597986 Msa0145000:CDS 55.0%
CCCACATCCCCATCTTCAAC+AGG - chr1_4:4597971-4597990 None:intergenic 55.0%
TGAAGATGGGGATGTGGGAG+CGG + chr1_4:4597973-4597992 Msa0145000:CDS 55.0%
TCCTATACTCACACAGCCGG+AGG + chr1_4:4598316-4598335 Msa0145000:CDS 55.0%
ACCTCCGGCTGTGTGAGTAT+AGG - chr1_4:4598320-4598339 None:intergenic 55.0%
AGTTGACGCCATCTGACCTC+CGG - chr1_4:4598335-4598354 None:intergenic 55.0%
!! CTGGTTCTGGCGATTACTGG+AGG - chr1_4:4598503-4598522 None:intergenic 55.0%
AGCTCCATTCCGACATCCTC+TGG - chr1_4:4598617-4598636 None:intergenic 55.0%
CTGCAGCTGCCTCTCTTTCT+TGG + chr1_4:4598941-4598960 Msa0145000:three_prime_UTR 55.0%
TGGCCCTCCCATGTTGGAAG+TGG - chr1_4:4595969-4595988 None:intergenic 60.0%
CTCACATGGCAAGTGGTGGC+TGG + chr1_4:4597695-4597714 Msa0145000:CDS 60.0%
TCACACAGCCGGAGGTCAGA+TGG + chr1_4:4598324-4598343 Msa0145000:CDS 60.0%
GCGCGTGTTTGGCCCTGCAT+TGG - chr1_4:4594994-4595013 None:intergenic 65.0%
TGGCTATGACGGCGCCATGG+AGG + chr1_4:4595248-4595267 Msa0145000:intron 65.0%
GGGAGGCCTGGATGCATGCA+AGG + chr1_4:4598792-4598811 Msa0145000:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 4593962 4599168 4593962 ID=Msa0145000;Name=Msa0145000
chr1_4 mRNA 4593962 4599168 4593962 ID=Msa0145000-mRNA-1;Parent=Msa0145000;Name=Msa0145000-mRNA-1;_AED=0.18;_eAED=0.18;_QI=82|0.6|0.66|1|1|1|6|424|482
chr1_4 exon 4593962 4594103 4593962 ID=Msa0145000-mRNA-1:exon:1964;Parent=Msa0145000-mRNA-1
chr1_4 exon 4595944 4596069 4595944 ID=Msa0145000-mRNA-1:exon:1965;Parent=Msa0145000-mRNA-1
chr1_4 exon 4596243 4596326 4596243 ID=Msa0145000-mRNA-1:exon:1966;Parent=Msa0145000-mRNA-1
chr1_4 exon 4597117 4597326 4597117 ID=Msa0145000-mRNA-1:exon:1967;Parent=Msa0145000-mRNA-1
chr1_4 exon 4597683 4597807 4597683 ID=Msa0145000-mRNA-1:exon:1968;Parent=Msa0145000-mRNA-1
chr1_4 exon 4597901 4599168 4597901 ID=Msa0145000-mRNA-1:exon:1969;Parent=Msa0145000-mRNA-1
chr1_4 five_prime_UTR 4593962 4594043 4593962 ID=Msa0145000-mRNA-1:five_prime_utr;Parent=Msa0145000-mRNA-1
chr1_4 CDS 4594044 4594103 4594044 ID=Msa0145000-mRNA-1:cds;Parent=Msa0145000-mRNA-1
chr1_4 CDS 4595944 4596069 4595944 ID=Msa0145000-mRNA-1:cds;Parent=Msa0145000-mRNA-1
chr1_4 CDS 4596243 4596326 4596243 ID=Msa0145000-mRNA-1:cds;Parent=Msa0145000-mRNA-1
chr1_4 CDS 4597117 4597326 4597117 ID=Msa0145000-mRNA-1:cds;Parent=Msa0145000-mRNA-1
chr1_4 CDS 4597683 4597807 4597683 ID=Msa0145000-mRNA-1:cds;Parent=Msa0145000-mRNA-1
chr1_4 CDS 4597901 4598744 4597901 ID=Msa0145000-mRNA-1:cds;Parent=Msa0145000-mRNA-1
chr1_4 three_prime_UTR 4598745 4599168 4598745 ID=Msa0145000-mRNA-1:three_prime_utr;Parent=Msa0145000-mRNA-1
Gene Sequence

>Msa0145000

ATGCGTGGATTGCGAAAATCGAAGAGAGTTTCATGGCCTTCCGAGTTAGATCTTTGTCAGGAGACTGAGTGCAAGATCTCAGCCACTTCCAACATGGGAGGGCCAAATCAGTGTGATATTTTCTGGAGATGTACCGCTGGTGCTTGCAGAAGTATCGGAGGTAAAGTTGACAGAAATTCTTGGTTGGATCTTAACTTGGTGCCTCAGTCTCAATGCAGAGTTATAGAGAGAAGGGCCGATCCTCTTGTTGGGCAAATTAACGAGATATCAGTTAGATTATTCTTATCTGAGGAATCTCCTTCACAAGTTGGGTTGAATTCTCAAGATCACCTCCAAGCAAAGATATCATCCTTGTTGCCTCAAGGAGAAGCTGGTTCTGATGATATTTTACCTCCTGGATTTGAGGGAACTCATGCTTCAAGTCAGTTTGACATTAAGCCGTCCGAAATACCAGTTATTAGCTGGATTAAACCACCTAAGATCGTGCTAGATCTCACATGGCAAGTGGTGGCTGGAGAAGAAAGCAAAGAGATATTTGATCAACATCAGAGGGAGATGAGAGTCCTTGAAGCTATTTATCCACGAATATCTTCCATTCCTCCAAATCCTATTTCAGTGGATGTTGACGATTCCCATTACATTGATGGTCATGTTGTCGTGATCCCAATTACGCCTGTTGAAGATGGGGATGTGGGAGCGGATACATTATCTCCTGGTATATTGGATGGTTCAAACACTGTTACGACTATGTCGATGGTGTCTGATGTAGCTGCTGCATCTGTTGCTTTAACTGGCTTAGTGAAGAGCAGTGAACATGGTAATTTGATTGATCCTGAATTACTCAATAATATTCTCAACAATCCGGAAGTGATTGAGAAGTTGGTTAGAAATTATAATGTTCAAAATGCACAGTATGCACAAAACACCGGATCATCATCAAATGTTTTTTCACATCCTCCTAATCCCTTTAATCAAGTTGAGACCACTACATCCTCATCAAATACTTTTTCATCCACTTCTTCCTATACTCACACAGCCGGAGGTCAGATGGCGTCAACTATGTCTACTCAATGGCATCGTAGGCCTGAAATCAGTCCAGCTATTGCTGCTACTCCTGTTGAGGTCCCTTCAACAAAAGATGTAAACTACTATAAGAGCTTGATTCAGCAACATGGAGGAGATAAACAAGAAGCACTTCCATACTCCTCCAGTAATCGCCAGAACCAGCAACCATTATCAAACTATGATACAGTACACAATTTTAGAGCAAAAGGATCAAAACCAAAAACAACGAAGCCTTGTATCTTTTTTAATAGTTCCAGAGGATGTCGGAATGGAGCTAACTGTACCTTTCAGCATGATGCATCATTTCAGCCCCAACAAGGTAATCCCTCGTCAGGGATGCATAGTTCAAAGAGAATGAAAATGGATAATGAGATCAGCAGTTAA
Protein sequence

>Msa0145000

MRGLRKSKRVSWPSELDLCQETECKISATSNMGGPNQCDIFWRCTAGACRSIGGKVDRNSWLDLNLVPQSQCRVIERRADPLVGQINEISVRLFLSEESPSQVGLNSQDHLQAKISSLLPQGEAGSDDILPPGFEGTHASSQFDIKPSEIPVISWIKPPKIVLDLTWQVVAGEESKEIFDQHQREMRVLEAIYPRISSIPPNPISVDVDDSHYIDGHVVVIPITPVEDGDVGADTLSPGILDGSNTVTTMSMVSDVAAASVALTGLVKSSEHGNLIDPELLNNILNNPEVIEKLVRNYNVQNAQYAQNTGSSSNVFSHPPNPFNQVETTTSSSNTFSSTSSYTHTAGGQMASTMSTQWHRRPEISPAIAATPVEVPSTKDVNYYKSLIQQHGGDKQEALPYSSSNRQNQQPLSNYDTVHNFRAKGSKPKTTKPCIFFNSSRGCRNGANCTFQHDASFQPQQGNPSSGMHSSKRMKMDNEISS*