AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0096990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096990 MtrunA17_Chr1g0153061 98.930 1028 11 0 1 1028 1 1028 0.0 2114
Msa0096990 MtrunA17_Chr3g0134191 84.436 1028 156 2 1 1027 1 1025 0.0 1790
Msa0096990 MtrunA17_Chr4g0053211 70.680 1030 291 8 5 1027 9 1034 0.0 1470
Msa0096990 MtrunA17_Chr5g0427481 47.168 971 376 22 8 891 17 937 0.0 754
Msa0096990 MtrunA17_Chr3g0132921 63.158 437 140 5 9 441 10 429 0.0 559
Msa0096990 MtrunA17_Chr3g0132911 46.522 460 190 5 476 892 32 478 6.28e-112 362
Msa0096990 MtrunA17_Chr2g0327581 39.152 401 202 11 9 394 50 423 3.35e-69 251
Msa0096990 MtrunA17_Chr1g0182151 36.967 422 223 11 9 415 55 448 7.28e-68 247
Msa0096990 MtrunA17_Chr1g0178411 38.272 405 205 11 9 394 14 392 9.11e-67 243
Msa0096990 MtrunA17_Chr7g0266631 37.284 405 209 11 9 394 10 388 8.78e-65 237
Msa0096990 MtrunA17_Chr2g0322291 37.799 418 204 12 6 404 86 466 1.88e-64 238
Msa0096990 MtrunA17_Chr4g0069141 38.140 430 215 13 6 422 151 542 2.30e-64 239
Msa0096990 MtrunA17_Chr3g0122121 37.871 404 205 10 3 392 93 464 1.05e-63 236
Msa0096990 MtrunA17_Chr1g0152231 37.403 385 201 9 9 386 4 355 9.79e-63 229
Msa0096990 MtrunA17_Chr4g0045381 37.531 397 203 11 9 392 194 558 1.87e-62 233
Msa0096990 MtrunA17_Chr8g0377731 36.609 407 207 11 1 392 48 418 7.57e-61 226
Msa0096990 MtrunA17_Chr1g0193221 37.352 423 225 13 9 426 4 391 9.79e-59 220
Msa0096990 MtrunA17_Chr2g0307481 37.260 365 182 9 2 366 82 399 3.62e-57 209
Msa0096990 MtrunA17_Chr7g0271961 34.063 411 206 11 9 404 402 762 6.60e-55 207
Msa0096990 MtrunA17_Chr2g0319271 36.813 364 192 12 9 360 400 737 2.18e-53 200
Msa0096990 MtrunA17_Chr7g0238581 33.690 374 185 11 9 365 26 353 1.68e-52 195
Msa0096990 MtrunA17_Chr1g0195111 34.005 397 217 12 9 397 397 756 2.66e-52 199
Msa0096990 MtrunA17_Chr5g0411971 35.792 366 190 8 9 368 400 726 3.68e-52 199
Msa0096990 MtrunA17_Chr1g0192481 33.985 409 223 12 9 409 59 428 5.00e-52 192
Msa0096990 MtrunA17_Chr4g0062291 35.925 373 185 10 9 366 124 457 6.67e-52 194
Msa0096990 MtrunA17_Chr5g0421521 35.519 366 191 8 9 368 375 701 2.44e-51 196
Msa0096990 MtrunA17_Chr5g0407791 35.326 368 192 10 9 370 890 1217 3.23e-51 197
Msa0096990 MtrunA17_Chr5g0421591 35.246 366 192 8 9 368 375 701 5.19e-51 194
Msa0096990 MtrunA17_Chr8g0369881 33.787 367 199 9 9 370 876 1203 5.20e-51 196
Msa0096990 MtrunA17_Chr7g0258991 36.667 390 200 13 9 392 74 422 7.13e-51 195
Msa0096990 MtrunA17_Chr4g0042061 36.565 361 196 11 9 360 433 769 1.35e-49 189
Msa0096990 MtrunA17_Chr3g0145071 36.340 377 186 12 44 410 137 469 1.47e-49 191
Msa0096990 MtrunA17_Chr6g0483701 35.891 404 198 16 3 392 26 382 1.48e-49 190
Msa0096990 MtrunA17_Chr3g0142261 33.182 440 234 15 9 437 20 410 1.04e-48 189
Msa0096990 MtrunA17_Chr2g0280421 36.288 361 186 10 9 360 438 763 1.84e-48 186
Msa0096990 MtrunA17_Chr4g0035661 35.544 377 189 13 44 410 127 459 2.15e-48 187
Msa0096990 MtrunA17_Chr4g0049011 35.616 365 201 12 9 364 280 619 7.14e-48 181
Msa0096990 MtrunA17_Chr7g0257301 32.432 407 224 12 9 392 393 771 7.17e-48 186
Msa0096990 MtrunA17_Chr2g0312631 34.509 397 203 16 9 392 385 737 9.49e-48 185
Msa0096990 MtrunA17_Chr7g0272871 31.395 430 234 15 9 426 128 508 2.97e-47 181
Msa0096990 MtrunA17_Chr8g0372171 33.094 417 219 14 9 409 20 392 4.23e-47 183
Msa0096990 MtrunA17_Chr6g0485471 34.439 392 201 9 9 388 116 463 5.40e-47 179
Msa0096990 MtrunA17_Chr1g0191851 31.850 427 236 14 9 426 148 528 7.52e-47 181
Msa0096990 MtrunA17_Chr5g0405181 32.143 420 220 14 9 409 21 394 8.89e-47 182
Msa0096990 MtrunA17_Chr5g0398521 31.733 375 208 9 9 365 58 402 1.18e-46 181
Msa0096990 MtrunA17_Chr4g0070001 33.967 368 194 10 9 370 144 468 6.68e-46 179
Msa0096990 MtrunA17_Chr5g0445211 30.394 431 248 10 6 416 72 470 9.04e-46 179
Msa0096990 MtrunA17_Chr3g0101021 31.156 398 224 10 9 390 76 439 9.24e-46 179
Msa0096990 MtrunA17_Chr5g0447041 31.200 500 245 17 9 471 435 872 1.67e-45 178
Msa0096990 MtrunA17_Chr7g0245931 30.280 393 219 9 9 386 53 405 1.79e-44 174
Msa0096990 MtrunA17_Chr2g0331761 34.959 369 180 10 9 363 186 508 3.18e-44 171
Msa0096990 MtrunA17_Chr1g0191181 34.358 358 199 11 9 363 89 413 9.16e-44 169
Msa0096990 MtrunA17_Chr4g0036001 33.766 385 210 11 46 428 70 411 1.79e-43 171
Msa0096990 MtrunA17_Chr3g0102921 34.722 360 191 12 47 392 484 813 2.09e-43 172
Msa0096990 MtrunA17_Chr4g0067421 33.756 394 194 14 9 376 206 558 9.22e-43 168
Msa0096990 MtrunA17_Chr2g0295881 32.487 394 201 13 9 376 198 552 7.32e-42 166
Msa0096990 MtrunA17_Chr3g0132901 43.830 235 121 4 523 757 24 247 9.35e-36 142
Msa0096990 MtrunA17_Chr7g0269681 38.222 225 119 5 174 397 21 226 2.08e-33 135
Msa0096990 MtrunA17_Chr8g0367581 30.278 360 198 11 9 362 147 459 7.85e-30 128
Msa0096990 MtrunA17_Chr8g0386891 40.936 171 84 2 193 363 3 156 4.05e-29 121
Msa0096990 MtrunA17_Chr8g0390991 39.151 212 101 4 203 404 13 206 6.92e-25 110
Msa0096990 MtrunA17_Chr1g0187411 29.178 353 183 11 39 367 163 472 7.83e-24 108
Msa0096990 MtrunA17_Chr6g0484501 41.176 170 83 3 194 363 34 186 1.07e-23 101
Msa0096990 MtrunA17_Chr3g0142841 29.452 292 163 9 49 337 145 396 1.11e-23 108
Msa0096990 MtrunA17_Chr6g0470541 29.043 303 158 13 47 343 51 302 8.02e-21 99.0
Msa0096990 MtrunA17_Chr7g0269691 34.014 147 87 4 9 148 401 544 1.21e-16 84.7
Msa0096990 MtrunA17_Chr6g0484511 29.730 148 93 4 9 148 290 434 5.35e-14 75.9
Msa0096990 MtrunA17_Chr8g0390981 31.081 148 91 4 9 148 516 660 6.38e-14 76.3
Msa0096990 MtrunA17_Chr8g0386901 30.055 183 105 7 9 174 484 660 1.94e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096990 AT5G47820.2 76.841 1032 220 10 5 1025 8 1031 0.0 1626
Msa0096990 AT5G47820.1 76.841 1032 220 10 5 1025 8 1031 0.0 1626
Msa0096990 AT3G50240.4 63.645 1026 342 12 7 1022 24 1028 0.0 1239
Msa0096990 AT3G50240.1 63.716 1028 343 13 7 1022 24 1033 0.0 1238
Msa0096990 AT3G50240.2 65.342 906 301 7 7 908 24 920 0.0 1146
Msa0096990 AT3G50240.3 62.830 947 322 13 88 1022 3 931 0.0 1100
Msa0096990 AT5G60930.1 63.274 452 150 7 1 446 1 442 2.65e-179 557
Msa0096990 AT5G60930.3 63.274 452 150 7 1 446 1 442 3.49e-179 557
Msa0096990 AT5G60930.2 63.274 452 150 7 1 446 1 442 2.07e-178 556
Msa0096990 AT2G36200.1 35.498 462 243 11 9 440 13 449 1.81e-68 249
Msa0096990 AT2G36200.2 37.871 404 208 10 9 394 13 391 9.82e-68 247
Msa0096990 AT2G28620.1 33.673 588 318 22 9 564 51 598 3.96e-67 245
Msa0096990 AT2G28620.3 33.503 588 319 22 9 564 51 598 5.55e-66 242
Msa0096990 AT2G28620.2 33.503 588 319 22 9 564 51 598 5.55e-66 242
Msa0096990 AT3G45850.2 38.557 402 203 13 9 394 56 429 6.43e-66 242
Msa0096990 AT3G45850.1 38.557 402 203 13 9 394 56 429 6.43e-66 242
Msa0096990 AT3G44050.1 39.012 405 202 10 6 397 91 463 5.99e-64 237
Msa0096990 AT2G37420.1 38.462 377 191 11 9 371 49 398 6.70e-64 235
Msa0096990 AT2G37420.2 38.462 377 191 11 9 371 49 398 6.70e-64 235
Msa0096990 AT3G19050.1 39.386 391 190 12 9 385 194 551 9.10e-64 238
Msa0096990 AT3G17360.2 36.344 454 232 13 9 448 169 579 3.14e-62 233
Msa0096990 AT3G17360.1 36.264 455 233 13 9 449 169 580 7.67e-62 231
Msa0096990 AT3G17360.3 36.264 455 233 13 9 449 169 580 7.91e-62 231
Msa0096990 AT3G63480.2 38.957 326 161 6 46 367 47 338 3.60e-59 211
Msa0096990 AT3G23670.2 34.837 399 215 8 6 392 94 459 8.26e-59 219
Msa0096990 AT4G14150.1 35.840 399 211 9 6 392 89 454 9.42e-59 221
Msa0096990 AT3G23670.1 34.837 399 215 8 6 392 94 459 2.43e-58 219
Msa0096990 AT1G59540.1 36.020 397 214 10 9 403 4 362 2.82e-57 213
Msa0096990 AT3G63480.1 38.485 330 161 7 46 367 47 342 4.55e-57 205
Msa0096990 AT3G12020.4 35.952 420 208 16 9 410 70 446 3.75e-56 211
Msa0096990 AT3G12020.1 35.952 420 208 16 9 410 70 446 3.75e-56 211
Msa0096990 AT3G10180.2 36.554 383 212 9 46 426 39 392 2.07e-55 210
Msa0096990 AT3G12020.3 35.800 419 210 15 9 410 70 446 2.09e-55 209
Msa0096990 AT3G12020.2 35.800 419 210 15 9 410 70 446 2.09e-55 209
Msa0096990 AT3G10180.1 36.554 383 212 9 46 426 39 392 2.39e-55 210
Msa0096990 AT2G22610.1 35.000 420 213 13 9 417 418 788 2.35e-54 206
Msa0096990 AT2G22610.3 35.000 420 213 13 9 417 419 789 2.35e-54 206
Msa0096990 AT4G21270.1 36.813 364 192 11 9 360 432 769 2.40e-54 204
Msa0096990 AT2G22610.2 35.000 420 213 13 9 417 418 788 2.87e-54 206
Msa0096990 AT3G49650.1 35.539 408 203 10 3 392 9 374 4.90e-54 203
Msa0096990 AT4G05190.2 36.264 364 194 11 9 360 416 753 6.32e-54 202
Msa0096990 AT1G18370.1 34.304 481 240 19 9 474 32 451 7.40e-54 204
Msa0096990 AT4G05190.1 36.264 364 194 11 9 360 429 766 7.63e-54 202
Msa0096990 AT5G27000.1 33.173 416 226 12 9 411 395 771 2.55e-52 199
Msa0096990 AT1G18550.1 35.405 370 186 9 9 364 152 482 6.23e-52 196
Msa0096990 AT1G21730.1 37.989 358 183 10 47 403 116 435 8.82e-52 197
Msa0096990 AT5G06670.8 36.061 391 199 12 9 389 67 416 1.60e-51 194
Msa0096990 AT5G06670.4 36.061 391 199 12 9 389 67 416 1.60e-51 194
Msa0096990 AT5G06670.7 36.061 391 199 12 9 389 67 416 1.60e-51 194
Msa0096990 AT3G10310.2 34.439 392 211 11 9 392 364 717 1.62e-51 197
Msa0096990 AT5G06670.5 36.061 391 199 12 9 389 67 416 1.66e-51 194
Msa0096990 AT1G72250.2 33.656 413 228 10 9 415 501 873 1.69e-51 198
Msa0096990 AT1G72250.1 33.656 413 228 10 9 415 492 864 1.72e-51 198
Msa0096990 AT1G72250.3 33.656 413 228 10 9 415 513 885 1.79e-51 198
Msa0096990 AT1G72250.4 33.656 413 228 10 9 415 512 884 1.97e-51 197
Msa0096990 AT3G10310.1 34.439 392 211 11 9 392 364 717 2.15e-51 196
Msa0096990 AT5G06670.2 36.061 391 199 12 9 389 67 416 2.34e-51 196
Msa0096990 AT5G06670.3 36.061 391 199 12 9 389 67 416 2.34e-51 196
Msa0096990 AT1G09170.5 32.840 405 225 11 9 405 435 800 2.78e-51 197
Msa0096990 AT1G09170.4 32.840 405 225 11 9 405 435 800 3.35e-51 195
Msa0096990 AT5G54670.3 37.168 339 172 11 45 371 381 690 4.58e-51 192
Msa0096990 AT5G65930.1 32.432 407 226 9 9 409 888 1251 4.75e-51 197
Msa0096990 AT5G65930.2 32.432 407 226 9 9 409 889 1252 5.10e-51 196
Msa0096990 AT5G65930.3 32.432 407 226 9 9 409 895 1258 5.18e-51 196
Msa0096990 AT1G09170.2 33.086 405 224 11 9 405 435 800 7.00e-51 194
Msa0096990 AT5G02370.1 32.804 378 187 9 9 370 21 347 1.16e-50 189
Msa0096990 AT5G27550.2 33.255 427 230 15 9 426 133 513 1.41e-50 192
Msa0096990 AT5G27550.1 33.255 427 230 15 9 426 133 513 1.41e-50 192
Msa0096990 AT5G54670.1 37.168 339 172 11 45 371 441 750 2.31e-50 191
Msa0096990 AT5G54670.2 37.168 339 172 11 45 371 441 750 2.31e-50 191
Msa0096990 AT2G47500.2 35.616 365 192 11 46 407 442 766 2.49e-50 193
Msa0096990 AT2G47500.1 35.616 365 192 11 46 407 442 766 4.69e-50 192
Msa0096990 AT2G21380.2 37.784 352 170 12 46 392 144 451 7.00e-50 192
Msa0096990 AT2G21380.1 37.784 352 170 12 46 392 144 451 7.00e-50 192
Msa0096990 AT4G27180.1 34.807 362 198 10 9 360 388 721 1.09e-49 189
Msa0096990 AT4G27180.2 34.807 362 198 10 9 360 388 721 1.09e-49 189
Msa0096990 AT4G24170.1 36.957 368 185 12 9 370 7 333 1.18e-49 191
Msa0096990 AT4G24170.2 36.957 368 185 12 9 370 7 333 1.18e-49 191
Msa0096990 AT5G66310.2 34.135 416 216 14 9 409 19 391 4.20e-49 190
Msa0096990 AT5G66310.3 34.135 416 216 14 9 409 19 391 4.20e-49 190
Msa0096990 AT5G66310.1 34.135 416 216 14 9 409 19 391 4.20e-49 190
Msa0096990 AT4G39050.1 35.897 390 201 13 9 392 99 445 4.25e-49 190
Msa0096990 AT1G09170.3 33.247 385 211 10 9 385 435 781 6.55e-49 187
Msa0096990 AT1G09170.7 33.247 385 211 10 9 385 435 781 6.55e-49 187
Msa0096990 AT5G06670.6 35.250 400 199 13 9 389 67 425 8.68e-49 189
Msa0096990 AT5G06670.1 35.250 400 199 13 9 389 67 425 8.68e-49 189
Msa0096990 AT3G54870.1 32.905 389 213 11 20 392 115 471 6.39e-48 186
Msa0096990 AT3G54870.2 32.474 388 216 10 20 392 115 471 8.42e-48 186
Msa0096990 AT3G54870.3 32.905 389 213 11 20 392 115 471 8.99e-48 185
Msa0096990 AT3G16060.1 35.492 386 185 11 9 378 170 507 1.52e-47 182
Msa0096990 AT1G12430.2 33.780 373 202 10 9 365 71 414 2.00e-47 184
Msa0096990 AT1G12430.1 33.780 373 202 10 9 365 71 414 2.12e-47 184
Msa0096990 AT3G43210.3 35.162 401 207 12 9 400 30 386 3.84e-47 183
Msa0096990 AT3G43210.5 35.162 401 207 12 9 400 30 386 3.84e-47 183
Msa0096990 AT3G43210.2 35.162 401 207 12 9 400 30 386 3.84e-47 183
Msa0096990 AT3G43210.4 35.162 401 207 12 9 400 30 386 3.84e-47 183
Msa0096990 AT3G43210.1 35.162 401 207 12 9 400 30 386 3.84e-47 183
Msa0096990 AT1G55550.1 34.262 359 193 10 9 363 92 411 9.98e-47 181
Msa0096990 AT3G51150.2 33.778 450 229 18 3 430 12 414 5.90e-46 180
Msa0096990 AT3G51150.4 33.778 450 229 18 3 430 12 414 5.90e-46 180
Msa0096990 AT3G51150.3 33.778 450 229 18 3 430 12 414 5.90e-46 180
Msa0096990 AT3G51150.1 33.778 450 229 18 3 430 12 414 6.29e-46 180
Msa0096990 AT1G73860.2 33.967 368 191 11 9 363 427 755 1.17e-45 179
Msa0096990 AT3G44730.2 32.483 431 218 15 9 429 423 790 2.06e-45 178
Msa0096990 AT3G44730.3 32.483 431 218 15 9 429 423 790 2.06e-45 178
Msa0096990 AT1G73860.1 33.967 368 191 11 9 363 510 838 2.07e-45 178
Msa0096990 AT3G44730.1 32.483 431 218 15 9 429 378 745 2.59e-45 178
Msa0096990 AT3G44730.4 32.483 431 218 15 9 429 378 745 2.59e-45 178
Msa0096990 AT1G01950.2 31.552 393 214 10 9 386 61 413 5.78e-45 176
Msa0096990 AT1G01950.1 31.552 393 214 10 9 386 61 413 7.05e-45 176
Msa0096990 AT1G01950.3 31.552 393 214 10 9 386 61 413 9.41e-45 176
Msa0096990 AT1G18410.3 34.153 366 192 12 9 363 490 817 2.41e-44 175
Msa0096990 AT1G18410.2 34.153 366 192 12 9 363 490 817 2.41e-44 175
Msa0096990 AT2G21300.2 32.234 394 215 12 9 392 25 376 4.99e-44 173
Msa0096990 AT2G21300.4 32.234 394 215 12 9 392 25 376 4.99e-44 173
Msa0096990 AT2G21300.3 32.234 394 215 12 9 392 25 376 4.99e-44 173
Msa0096990 AT2G21300.1 32.234 394 215 12 9 392 25 376 4.99e-44 173
Msa0096990 AT2G21300.5 32.234 394 215 12 9 392 25 376 4.99e-44 173
Msa0096990 AT1G18410.4 34.153 366 192 12 9 363 633 960 7.67e-44 173
Msa0096990 AT3G16630.2 32.564 390 205 10 9 374 194 549 8.34e-44 172
Msa0096990 AT3G16630.1 32.564 390 205 10 9 374 194 549 8.34e-44 172
Msa0096990 AT1G18410.5 34.153 366 184 12 9 363 480 799 1.57e-43 172
Msa0096990 AT5G41310.1 33.333 318 158 6 47 363 468 732 1.66e-43 172
Msa0096990 AT1G18410.1 33.880 366 185 12 9 363 633 952 4.16e-43 171
Msa0096990 AT1G59540.2 37.049 305 156 7 99 403 2 270 5.98e-43 168
Msa0096990 AT1G63640.5 33.019 318 177 7 47 363 508 790 2.04e-42 169
Msa0096990 AT1G63640.1 33.019 318 177 7 47 363 518 800 2.48e-42 168
Msa0096990 AT1G63640.4 33.019 318 177 7 47 363 518 800 2.48e-42 168
Msa0096990 AT1G63640.3 33.019 318 177 7 47 363 518 800 2.64e-42 168
Msa0096990 AT1G63640.2 32.812 320 168 8 47 363 518 793 3.95e-42 168
Msa0096990 AT5G27950.1 32.895 380 212 15 9 384 80 420 6.24e-41 161
Msa0096990 AT1G09170.6 33.232 328 176 8 9 329 435 726 6.73e-41 162
Msa0096990 AT1G09170.8 33.232 328 176 8 9 329 435 726 6.73e-41 162
Msa0096990 AT4G38950.3 31.218 394 219 13 9 392 14 365 8.03e-41 162
Msa0096990 AT4G38950.5 31.218 394 219 13 9 392 14 365 8.03e-41 162
Msa0096990 AT4G38950.4 31.218 394 219 13 9 392 14 365 8.03e-41 162
Msa0096990 AT4G38950.1 31.218 394 219 13 9 392 14 365 8.03e-41 162
Msa0096990 AT4G38950.2 31.218 394 219 13 9 392 14 365 8.03e-41 162
Msa0096990 AT1G09170.1 29.877 405 201 11 9 405 435 764 4.36e-40 161
Msa0096990 AT1G01950.4 34.483 290 155 6 84 365 1 263 1.90e-37 151
Msa0096990 AT3G20150.1 29.815 379 208 11 47 401 136 480 2.87e-37 152
Msa0096990 AT3G20150.2 29.815 379 208 11 47 401 136 480 4.07e-37 152
Msa0096990 AT3G51150.5 39.916 238 120 9 200 430 40 261 1.74e-31 133
Msa0096990 AT5G65460.2 31.198 359 196 12 9 362 139 451 4.76e-31 132
Msa0096990 AT5G42490.2 33.113 302 154 10 9 301 10 272 6.63e-31 132
Msa0096990 AT5G42490.1 33.113 302 154 10 9 301 10 272 6.95e-31 132
Msa0096990 AT5G65460.4 31.198 359 196 12 9 362 139 451 7.38e-31 132
Msa0096990 AT5G65460.1 31.198 359 196 12 9 362 139 451 8.16e-31 132
Msa0096990 AT5G65460.6 31.198 359 196 12 9 362 139 451 9.47e-31 131
Msa0096990 AT5G65460.3 30.601 366 196 12 9 362 139 458 4.99e-30 129
Msa0096990 AT5G27950.2 32.975 279 156 8 106 384 7 254 9.53e-30 124
Msa0096990 AT5G10470.2 29.805 359 201 12 9 362 143 455 1.10e-27 122
Msa0096990 AT5G10470.1 29.805 359 201 12 9 362 143 455 1.12e-27 122
Msa0096990 AT4G14330.1 28.358 335 195 12 42 372 84 377 2.24e-22 104
Msa0096990 AT5G33300.1 34.862 218 126 3 526 741 22 225 1.52e-20 96.3
Msa0096990 AT1G20060.10 30.743 296 166 8 49 340 165 425 4.04e-20 97.1
Msa0096990 AT1G20060.4 30.743 296 166 8 49 340 165 425 4.38e-20 97.1
Msa0096990 AT1G20060.3 30.743 296 166 8 49 340 165 425 4.48e-20 97.1
Msa0096990 AT1G20060.8 30.743 296 166 8 49 340 165 425 4.54e-20 97.1
Msa0096990 AT1G20060.9 30.743 296 166 8 49 340 165 425 4.54e-20 97.1
Msa0096990 AT1G20060.5 30.743 296 166 8 49 340 165 425 4.71e-20 97.1
Msa0096990 AT1G20060.2 30.743 296 166 8 49 340 165 425 4.71e-20 97.1
Msa0096990 AT1G20060.6 30.743 296 166 8 49 340 165 425 5.00e-20 96.7
Msa0096990 AT1G20060.7 30.743 296 166 8 49 340 165 425 5.50e-20 96.7
Msa0096990 AT5G65460.5 30.769 234 121 6 129 362 13 205 3.94e-18 90.9
Msa0096990 AT5G23910.1 26.769 325 185 11 46 370 54 325 1.20e-16 85.5
Msa0096990 AT5G23910.2 26.769 325 185 11 46 370 58 329 1.20e-16 85.5
Msa0096990 AT1G20060.1 28.571 315 160 10 49 340 165 437 4.32e-12 71.2

Find 268 sgRNAs with CRISPR-Local

Find 592 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACATTTGATCATGTTTA+TGG 0.105441 1_3:+2766694 Msa0096990:CDS
AATCTTCAGGCGGGCTGCTC+TGG 0.126360 1_3:+2772709 Msa0096990:intron
AAATTCAATCTGATTCTTTA+AGG 0.135777 1_3:-2767225 None:intergenic
CATGTTGTAGTTACAATAAA+TGG 0.152788 1_3:+2772414 Msa0096990:intron
AAGTGCTGCTTGAGTGTTTC+AGG 0.179023 1_3:-2770406 None:intergenic
CATATATTGAAGCAAAATTT+TGG 0.181552 1_3:-2773132 None:intergenic
ACAGAGTGTTTCAATGAATT+TGG 0.185752 1_3:-2774356 None:intergenic
TAACAGTTCCTTTAACTTCT+TGG 0.217843 1_3:-2772136 None:intergenic
AGCTTCTCATCATTGATTAA+TGG 0.218322 1_3:-2765813 None:intergenic
GTATGTCCATTTGTAGTATC+TGG 0.218444 1_3:-2767461 None:intergenic
GCAAATCCGTTCTTCCCTTT+TGG 0.237050 1_3:-2772791 None:intergenic
GATTGTGTAACTGTTGTTTC+TGG 0.240158 1_3:+2765849 Msa0096990:CDS
AGAAAGAGAGAGGGTAATTA+TGG 0.240428 1_3:-2765521 None:intergenic
GTTCTCCAGTGAAGCTATTC+TGG 0.259060 1_3:-2772988 None:intergenic
TCCTTAATGTTATGTTTCTA+TGG 0.291702 1_3:+2775439 Msa0096990:three_prime_UTR
TATTTCCAGACAAATTATAT+TGG 0.298172 1_3:+2775326 Msa0096990:three_prime_UTR
ACTCTATTGCAGACAGGTTC+TGG 0.306467 1_3:+2767110 Msa0096990:intron
CCAACACTAGAAGGAGAAAA+AGG 0.307171 1_3:+2775366 Msa0096990:three_prime_UTR
ACTAAATCAGCGTCAGAAAA+TGG 0.309017 1_3:+2771479 Msa0096990:CDS
TACTCAATGACCCTTGTTCT+AGG 0.309826 1_3:-2767604 None:intergenic
TAAAGACTGATGGGTTAAAA+AGG 0.310228 1_3:+2769740 Msa0096990:CDS
GCAAGATAGGGATCGTCTTT+TGG 0.320530 1_3:+2770581 Msa0096990:intron
TACTTACAACAGGCTTATTT+CGG 0.322983 1_3:-2768889 None:intergenic
CATTTGTGATGCAGCAAGAT+AGG 0.323996 1_3:+2770568 Msa0096990:intron
AGACAGGATCTTACCGAAAC+TGG 0.325139 1_3:-2773654 None:intergenic
CTTCTCCCATTGAGCGCAAC+TGG 0.330511 1_3:-2773109 None:intergenic
TCCTCAAGGAAAGAATTTCT+TGG 0.334203 1_3:+2769398 Msa0096990:CDS
GAGAAATGAAAGATCAAATC+AGG 0.338207 1_3:+2773532 Msa0096990:CDS
AGTATCTGGTTTGCTAATAA+AGG 0.339784 1_3:-2767447 None:intergenic
AACAAGAGGCAGAACAATTT+CGG 0.340705 1_3:+2771012 Msa0096990:CDS
AATTTCCAATATAATTTGTC+TGG 0.343918 1_3:-2775331 None:intergenic
TCAAATGTGGGAGAAGGATA+TGG 0.344753 1_3:+2773503 Msa0096990:CDS
AGTATATACCTCTATAAGTC+TGG 0.348499 1_3:+2775154 Msa0096990:three_prime_UTR
GCAGAACTTTGTGCTCGTTC+TGG 0.349147 1_3:+2769083 Msa0096990:CDS
ACCATAGAAACATAACATTA+AGG 0.349618 1_3:-2775440 None:intergenic
CAATGTGAGTGCGAGGTTCT+TGG 0.350177 1_3:-2765711 None:intergenic
AGAAGAAGTAAGAGATTTGC+TGG 0.350916 1_3:+2767418 Msa0096990:CDS
TTACCCATTGCTTCGCTCAT+TGG 0.355412 1_3:-2769790 None:intergenic
AATGGCCACCAAGAAGTTAA+AGG 0.357299 1_3:+2772128 Msa0096990:CDS
TTACATTTGATCATGTTTAT+GGG 0.368115 1_3:+2766695 Msa0096990:CDS
GAATGTGTTTCTTCCCTTGT+TGG 0.369011 1_3:+2766751 Msa0096990:CDS
ATTCATGGTATCATTTAAAC+TGG 0.377635 1_3:-2767946 None:intergenic
TCAATAAGCATGTAGCATAT+TGG 0.380362 1_3:-2765615 None:intergenic
CACATTGGCCAAGCCAGTTT+CGG 0.381161 1_3:+2773641 Msa0096990:CDS
TGGCTCTTCTGATGAAGTTC+AGG 0.382437 1_3:+2769106 Msa0096990:CDS
TTGCACTTGGTAGATCTTGC+TGG 0.382704 1_3:+2767990 Msa0096990:CDS
TAGATTGTATTTCATCTTGA+AGG 0.385584 1_3:-2770877 None:intergenic
GCAGTTGCAGGACAAGCTTC+TGG 0.386327 1_3:+2774615 Msa0096990:CDS
CGCTGTTTCGATGCTGGCAC+AGG 0.388568 1_3:-2774410 None:intergenic
ACTATGATACAGGTGCAAAT+TGG 0.390933 1_3:+2766661 Msa0096990:intron
GTAAGTTTACTATCTCTATA+AGG 0.392347 1_3:-2768238 None:intergenic
TTCTCCTTCTAGTGTTGGTA+TGG 0.393322 1_3:-2775361 None:intergenic
TTCATTGACAATTGCCCAAT+GGG 0.393915 1_3:-2774585 None:intergenic
TACACTTCTGCAAAACAGTA+TGG 0.394776 1_3:+2770006 Msa0096990:CDS
TTAACAACGGACCTCGATAA+AGG 0.395065 1_3:-2767261 None:intergenic
CTTGTTGGTGGTTTGTTCCA+AGG 0.395371 1_3:+2766766 Msa0096990:CDS
GGCACAGGATCCGGAGATAA+AGG 0.395926 1_3:-2774395 None:intergenic
AGTTGCTTGCTTGGAGGCAT+TGG 0.398435 1_3:+2775297 Msa0096990:three_prime_UTR
TATCAAATTCACTTGATTTG+AGG 0.400059 1_3:-2774780 None:intergenic
TTCGATGCTGGCACAGGATC+CGG 0.401136 1_3:-2774404 None:intergenic
GCTTCGCTCATTGGATAGTC+GGG 0.401714 1_3:-2769781 None:intergenic
CACTTGGCCATTAGCAATGC+CGG 0.410267 1_3:-2774444 None:intergenic
GAAGCCTCGCGAATTTGTAT+AGG 0.414886 1_3:-2767512 None:intergenic
ACAGGGAAAGTGACTATTCC+TGG 0.416389 1_3:+2767482 Msa0096990:CDS
ATCAATGATGAGAAGCTTCA+AGG 0.418084 1_3:+2765819 Msa0096990:CDS
TTGAAGAAGTAGCAAAAGAG+TGG 0.419207 1_3:+2769978 Msa0096990:CDS
AATGCTACTGTTCTTGCATA+TGG 0.422056 1_3:+2766793 Msa0096990:CDS
TGGCTGCAGGGTGATGTAAA+TGG 0.423265 1_3:+2775123 Msa0096990:intron
TCAATTATTTGATAACTGTC+AGG 0.424363 1_3:-2775263 None:intergenic
GATACTACAAATGGACATAC+AGG 0.424832 1_3:+2767464 Msa0096990:CDS
GAAATCTAAGCCACGACAAA+TGG 0.425273 1_3:-2774817 None:intergenic
ATCTAATTCACTTGTGGCAA+TGG 0.425321 1_3:+2773025 Msa0096990:CDS
AGTGGCTAATTCAATTCAAA+TGG 0.426597 1_3:+2774670 Msa0096990:CDS
TATACACCCGGCATTGCTAA+TGG 0.428341 1_3:+2774437 Msa0096990:CDS
TGGAACCAGTTGCGCTCAAT+GGG 0.432142 1_3:+2773104 Msa0096990:CDS
ATCTTCAGGCGGGCTGCTCT+GGG 0.433564 1_3:+2772710 Msa0096990:intron
TGCTTCGCTCATTGGATAGT+CGG 0.435654 1_3:-2769782 None:intergenic
TTGTTGGTGGTTTGTTCCAA+GGG 0.436542 1_3:+2766767 Msa0096990:CDS
GAGAGAGTAGATATAGTTGA+AGG 0.436741 1_3:-2765551 None:intergenic
TCTTTCTATGTCTTGTGCCT+AGG 0.437417 1_3:-2774863 None:intergenic
TGCTTCTTCGTGATGGAAGC+AGG 0.437443 1_3:+2765753 Msa0096990:exon
CTGGAACCAGTTGCGCTCAA+TGG 0.440080 1_3:+2773103 Msa0096990:CDS
CTGTCCATACCAACACTAGA+AGG 0.442261 1_3:+2775357 Msa0096990:three_prime_UTR
GATCAAATCAGGGAACTTGT+AGG 0.450119 1_3:+2773543 Msa0096990:CDS
CTCTATTGCAGACAGGTTCT+GGG 0.450217 1_3:+2767111 Msa0096990:intron
TGTTGTTTCTGGGAAGCCTC+AGG 0.452738 1_3:+2765860 Msa0096990:CDS
TGGGAGTGGAGCAACTAAAC+AGG 0.453139 1_3:+2772434 Msa0096990:CDS
ATGTTGTAGTTACAATAAAT+GGG 0.455550 1_3:+2772415 Msa0096990:intron
CAAATTCGCGAGGCTTCAAA+TGG 0.456822 1_3:+2767518 Msa0096990:CDS
GTGTGTTTGTCCGTCAGAAC+CGG 0.457027 1_3:-2770625 None:intergenic
TGCATACTTCAAAGTGTTGA+GGG 0.460196 1_3:-2768849 None:intergenic
GCAAGCTATGGAGGTGGAAA+AGG 0.461364 1_3:+2774637 Msa0096990:CDS
GCTAAACAGTTAAAGAAAGA+AGG 0.462165 1_3:+2771420 Msa0096990:intron
ATGGAAGATAGTTGCTTGCT+TGG 0.463654 1_3:+2775288 Msa0096990:three_prime_UTR
CAGGCGGGCTGCTCTGGGAG+AGG 0.466260 1_3:+2772715 Msa0096990:intron
TATTTGCGCTGTTTCGATGC+TGG 0.466599 1_3:-2774416 None:intergenic
GGGTCATTGAGTAGAGCAAC+TGG 0.468496 1_3:+2767614 Msa0096990:CDS
ACAATCTATAAAAGCCCAAA+AGG 0.470007 1_3:+2770892 Msa0096990:CDS
GATCATGTTTATGGGAGCAC+TGG 0.472880 1_3:+2766703 Msa0096990:CDS
TACTGTTCTTGCATATGGTC+AGG 0.474542 1_3:+2766798 Msa0096990:CDS
TACGATATTCATGAAGTTCA+CGG 0.477092 1_3:-2769447 None:intergenic
ACAAAGATAATCTTCATTCA+TGG 0.478872 1_3:-2767961 None:intergenic
TCCTCGGCATTAATGTCAGC+AGG 0.480865 1_3:-2768824 None:intergenic
AATGGCCAGAATAGCTTCAC+TGG 0.482049 1_3:+2772983 Msa0096990:CDS
CAAAGTGTTGAGGGTTTCCT+CGG 0.484661 1_3:-2768840 None:intergenic
TAAACAAGGAACTCATAACT+TGG 0.486871 1_3:-2767190 None:intergenic
AATGTCAGCAGGACTTATAC+AGG 0.488922 1_3:-2768813 None:intergenic
GAAGATAGTTGCTTGCTTGG+AGG 0.489492 1_3:+2775291 Msa0096990:three_prime_UTR
GAAACACTCAAGCAGCACTT+TGG 0.490880 1_3:+2770409 Msa0096990:CDS
TTGGCTTGAAGCAGCTAATG+AGG 0.491992 1_3:+2769417 Msa0096990:CDS
TGAGGCAGAAGAACGAGAAC+GGG 0.495043 1_3:+2773061 Msa0096990:CDS
TTTGCTTTAGAAGCTGAACC+TGG 0.496058 1_3:-2770826 None:intergenic
TGATGCAGATGGTACCCATT+GGG 0.496391 1_3:+2774571 Msa0096990:intron
TCTAAAGATGGTTATCAAGC+AGG 0.497886 1_3:+2767158 Msa0096990:CDS
CAGTTCCTTTAACTTCTTGG+TGG 0.500889 1_3:-2772133 None:intergenic
AATAGATAACTAACCTGGAT+TGG 0.501945 1_3:-2767655 None:intergenic
GAATATCGTAGTAGATGCTC+TGG 0.504319 1_3:+2769460 Msa0096990:CDS
AATCTTGCTGCCGGTTCTGA+CGG 0.504737 1_3:+2770615 Msa0096990:CDS
GGATGAGAAGAGAACTGTCC+AGG 0.504809 1_3:+2770453 Msa0096990:CDS
CATGTCGCTAAATGCAAGAA+TGG 0.506499 1_3:+2772965 Msa0096990:CDS
TCTTCTAGCCGAGATGCATC+AGG 0.507391 1_3:+2772171 Msa0096990:CDS
GACAAGCTTCTGGCAAGCTA+TGG 0.507510 1_3:+2774625 Msa0096990:CDS
ACATGAATTGAATAAACGCT+TGG 0.509616 1_3:+2770039 Msa0096990:CDS
CAGCAGCTCTTTCTCTCTAG+AGG 0.511454 1_3:-2771045 None:intergenic
AATGGCGTCATTACTCTAGC+AGG 0.512461 1_3:+2767536 Msa0096990:CDS
AGTGGTCTTAGTCCTCCAAA+AGG 0.512838 1_3:+2772776 Msa0096990:CDS
CTCTAATGTGATGGTGAAGA+TGG 0.513059 1_3:-2767892 None:intergenic
TTTCTTACAACAGTGATCCT+AGG 0.515169 1_3:+2774846 Msa0096990:three_prime_UTR
ATTGTGTAACTGTTGTTTCT+GGG 0.515444 1_3:+2765850 Msa0096990:CDS
TCAGAACGAGCTAAACGAAC+GGG 0.515451 1_3:+2768014 Msa0096990:CDS
GAACAGTAGCATTATACCCT+TGG 0.515800 1_3:-2766783 None:intergenic
GCCTCGCGAATTTGTATAGG+TGG 0.516572 1_3:-2767509 None:intergenic
ATGCTGTAACTAACTAGCTA+TGG 0.516659 1_3:-2775207 None:intergenic
GAAGTTGAAAATCTTGCTGC+CGG 0.517311 1_3:+2770606 Msa0096990:CDS
TCATTTAAACTGGTCTCACT+AGG 0.517650 1_3:-2767936 None:intergenic
AAACAAGGAACTCATAACTT+GGG 0.518178 1_3:-2767189 None:intergenic
AGCAAACCAGATACTACAAA+TGG 0.519187 1_3:+2767455 Msa0096990:CDS
AATGGAAGTGGCAGAAGCCA+TGG 0.519447 1_3:+2774688 Msa0096990:CDS
TGGTGCAGTACAAAGTGAAA+AGG 0.520685 1_3:+2769480 Msa0096990:CDS
ATTAAAAGCACTTGAAGCCC+AGG 0.520908 1_3:+2770674 Msa0096990:CDS
TTCATCAAACATGGCAGATG+AGG 0.522864 1_3:-2766731 None:intergenic
GCTAAACGAACGGGTTCTGA+TGG 0.523533 1_3:+2768023 Msa0096990:CDS
TTCATTTACTTGTTTCAGCA+TGG 0.524549 1_3:-2772744 None:intergenic
GAAGAAGAAACAAGATAGCC+AGG 0.525033 1_3:+2770808 Msa0096990:CDS
AGGCAGAACAATTTCGGCAG+TGG 0.527675 1_3:+2771018 Msa0096990:CDS
CAAGAGGAAGGAAGTTGAGA+AGG 0.527753 1_3:+2773587 Msa0096990:CDS
AGGAGGAGAGAGAAAGAGAG+AGG 0.528108 1_3:-2765531 None:intergenic
AAGATCTACCAAGTGCAACT+TGG 0.529653 1_3:-2767985 None:intergenic
TGTGTTTCTTCCCTTGTTGG+TGG 0.530044 1_3:+2766754 Msa0096990:CDS
AACAGCAGAACTGTTATGAT+AGG 0.530116 1_3:+2768663 Msa0096990:CDS
ATTTGTGATGCAGCAAGATA+GGG 0.531233 1_3:+2770569 Msa0096990:intron
ATTGAATTAGCCACTGATGA+TGG 0.532198 1_3:-2774662 None:intergenic
AGAGTAGATATAGTTGAAGG+AGG 0.532848 1_3:-2765548 None:intergenic
GCCAGGTTCAATTGCAACAA+AGG 0.533722 1_3:+2770985 Msa0096990:intron
AAATCAAACCTGCAAAAGCC+TGG 0.533751 1_3:-2768260 None:intergenic
GGATCTTACCGAAACTGGCT+TGG 0.533866 1_3:-2773649 None:intergenic
ATCCGTTCAGAAAGTTTCCA+TGG 0.534353 1_3:-2774705 None:intergenic
TTAAGCATCTCATTGGACAT+TGG 0.534383 1_3:-2769032 None:intergenic
CACTCAAGCAGCACTTTGGA+AGG 0.535297 1_3:+2770413 Msa0096990:CDS
ATTTGTATAGGTGGTTTACC+AGG 0.536156 1_3:-2767500 None:intergenic
CCTTCACTAACCGTGGACAC+TGG 0.536919 1_3:+2773084 Msa0096990:CDS
AAGAACATTTAACTAAGTAC+AGG 0.538715 1_3:+2774882 Msa0096990:three_prime_UTR
ATGGGCACTGGCTCTAAAGA+TGG 0.540306 1_3:+2767146 Msa0096990:CDS
AAGGAAGATCATGGAACTTG+AGG 0.540327 1_3:+2770432 Msa0096990:CDS
GCGTGATCAGCCATTTGTCG+TGG 0.541827 1_3:+2774807 Msa0096990:three_prime_UTR
GAAGAAGAAACGAATTTGAA+AGG 0.543337 1_3:+2771442 Msa0096990:CDS
CATCAAGGAACCTTTATCTC+CGG 0.543732 1_3:+2774385 Msa0096990:CDS
TTGCATACTTCAAAGTGTTG+AGG 0.543973 1_3:-2768850 None:intergenic
AAAACATACACAATGGGCAC+TGG 0.544765 1_3:+2767134 Msa0096990:CDS
TCTGGGAAAACATACACAAT+GGG 0.544841 1_3:+2767128 Msa0096990:CDS
TTTCATTGACAATTGCCCAA+TGG 0.545543 1_3:-2774586 None:intergenic
ATAAACATGATCAAATGTAA+AGG 0.546890 1_3:-2766692 None:intergenic
CATTCTTGCATTTAGCGACA+TGG 0.547369 1_3:-2772964 None:intergenic
GAACTTTGTGCTCGTTCTGG+TGG 0.547658 1_3:+2769086 Msa0096990:CDS
ATTTATAGATCAAAGTAGAA+AGG 0.548227 1_3:+2774481 Msa0096990:CDS
AAGCTTCTGGCAAGCTATGG+AGG 0.552380 1_3:+2774628 Msa0096990:CDS
GTAGTTACAATAAATGGGAG+TGG 0.554937 1_3:+2772420 Msa0096990:intron
CTTCGCTCATTGGATAGTCG+GGG 0.556388 1_3:-2769780 None:intergenic
ATGCTGCTGATTCCCTCACT+TGG 0.557504 1_3:-2774460 None:intergenic
GCCAAGAAATTCTTTCCTTG+AGG 0.557551 1_3:-2769399 None:intergenic
CAATTATTTGATAACTGTCA+GGG 0.557777 1_3:-2775262 None:intergenic
CTAATATGAACAACCAATCC+AGG 0.559038 1_3:+2767642 Msa0096990:CDS
GCACTTTGGAAGGAAGATCA+TGG 0.561078 1_3:+2770423 Msa0096990:CDS
ACTTGGCCATTAGCAATGCC+GGG 0.562514 1_3:-2774443 None:intergenic
AAACTACAGGTGTCAAATGT+GGG 0.563372 1_3:+2773491 Msa0096990:intron
CCGCATCTGCTCTAATGTGA+TGG 0.563483 1_3:-2767901 None:intergenic
GGAGGAGAGAGAAAGAGAGA+GGG 0.564450 1_3:-2765530 None:intergenic
TTGATGCAGATGGTACCCAT+TGG 0.564529 1_3:+2774570 Msa0096990:intron
ATGTCTGCTTGCCTAGAACA+AGG 0.565767 1_3:+2767593 Msa0096990:CDS
AGAACAATTTCGGCAGTGGA+AGG 0.566753 1_3:+2771022 Msa0096990:CDS
TAAACTACAGGTGTCAAATG+TGG 0.567809 1_3:+2773490 Msa0096990:intron
GTGATCAACCCACCGTTGCA+AGG 0.568414 1_3:-2772552 None:intergenic
CTGGTTTGCTAATAAAGGAC+GGG 0.569244 1_3:-2767442 None:intergenic
CTATCCAATGAGCGAAGCAA+TGG 0.570871 1_3:+2769786 Msa0096990:CDS
ACTGGTTATGTAGGTCCTCA+AGG 0.571402 1_3:+2769384 Msa0096990:intron
TAATTCAATTCAAATGGAAG+TGG 0.571541 1_3:+2774676 Msa0096990:CDS
CTGAGGCAGAAGAACGAGAA+CGG 0.572667 1_3:+2773060 Msa0096990:CDS
TAAACGCTTGGAGCAGAAAG+AGG 0.572986 1_3:+2770051 Msa0096990:CDS
AACAAAGGTCTACTAGCACT+TGG 0.574323 1_3:+2768160 Msa0096990:CDS
GTATTGACCCAGACTTATAG+AGG 0.577524 1_3:-2775162 None:intergenic
TATCCAATGAGCGAAGCAAT+GGG 0.582050 1_3:+2769787 Msa0096990:CDS
TGAAGAAGTAGCAAAAGAGT+GGG 0.583641 1_3:+2769979 Msa0096990:CDS
GTGTACAATATAAAGACTGA+TGG 0.584318 1_3:+2769730 Msa0096990:CDS
AGAAATGAAAGATCAAATCA+GGG 0.585288 1_3:+2773533 Msa0096990:CDS
AAGGGAAGAACGGATTTGCT+AGG 0.587045 1_3:+2772795 Msa0096990:CDS
GTATATACCTCTATAAGTCT+GGG 0.588111 1_3:+2775155 Msa0096990:three_prime_UTR
GTGGTCTTAGTCCTCCAAAA+GGG 0.588275 1_3:+2772777 Msa0096990:CDS
AAGTCATACCTGATGCATCT+CGG 0.588976 1_3:-2772179 None:intergenic
TACGGCAAAGCGAGATCAAG+AGG 0.592696 1_3:+2773571 Msa0096990:CDS
AGTTATCAAATAATTGAGCA+TGG 0.594964 1_3:+2775269 Msa0096990:three_prime_UTR
ATGTGATGGTGAAGATGGCA+TGG 0.595329 1_3:-2767887 None:intergenic
TCTTTGTGCCAAGTTGCACT+TGG 0.595380 1_3:+2767977 Msa0096990:CDS
CCAGTGTCCACGGTTAGTGA+AGG 0.595652 1_3:-2773084 None:intergenic
AAGCACACAGGCTAGGAGAG+TGG 0.597822 1_3:-2775562 None:intergenic
TGATCACGAGCTAGAAGTCA+TGG 0.598324 1_3:+2772568 Msa0096990:CDS
TCTGGTTTGCTAATAAAGGA+CGG 0.598718 1_3:-2767443 None:intergenic
CTTCTGGCAAGCTATGGAGG+TGG 0.598981 1_3:+2774631 Msa0096990:CDS
ACACTCTGTAGACGACATCA+AGG 0.598982 1_3:+2774370 Msa0096990:CDS
CTTGGAACAAACCACCAACA+AGG 0.599469 1_3:-2766765 None:intergenic
ATAGAGATAGTAAACTTACC+AGG 0.601140 1_3:+2768242 Msa0096990:CDS
TCCTGCTGACATTAATGCCG+AGG 0.601534 1_3:+2768823 Msa0096990:CDS
CATTGTTGTTGGAATAACTG+TGG 0.602446 1_3:-2765582 None:intergenic
CATATCATCTAATTCACTTG+TGG 0.602900 1_3:+2773019 Msa0096990:CDS
ATTGTTGTTGGAATAACTGT+GGG 0.604713 1_3:-2765581 None:intergenic
TGTACAATATAAAGACTGAT+GGG 0.607025 1_3:+2769731 Msa0096990:CDS
GGGAACTTGTAGGTCTACTA+CGG 0.607471 1_3:+2773553 Msa0096990:CDS
AGCCATGGAAACTTTCTGAA+CGG 0.607658 1_3:+2774703 Msa0096990:CDS
TCAACTCTCTTGCAGACACT+AGG 0.609851 1_3:+2773156 Msa0096990:CDS
ATGAGACTATGATGAGAGCA+AGG 0.610567 1_3:+2774739 Msa0096990:CDS
GCTAGATGATGCAACCACAT+TGG 0.610741 1_3:+2773626 Msa0096990:CDS
AGTCCTCCAAAAGGGAAGAA+CGG 0.612101 1_3:+2772785 Msa0096990:CDS
CATTGCTAATGGCCAAGTGA+GGG 0.612831 1_3:+2774448 Msa0096990:CDS
CCATCACATTAGAGCAGATG+CGG 0.613753 1_3:+2767901 Msa0096990:CDS
TCATCAAACATGGCAGATGA+GGG 0.614472 1_3:-2766730 None:intergenic
TGAGAAGTCCTTGCAACGGT+GGG 0.614533 1_3:+2772544 Msa0096990:CDS
AACAAGGAACTCATAACTTG+GGG 0.615666 1_3:-2767188 None:intergenic
GCAACTGGTTCCAGTGTCCA+CGG 0.616765 1_3:-2773094 None:intergenic
TTCTGGGAAAACATACACAA+TGG 0.617993 1_3:+2767127 Msa0096990:CDS
GTAAATGAATTTGCTGCCAG+TGG 0.619263 1_3:+2772758 Msa0096990:CDS
GCTGCATGTGTCCTTTATCG+AGG 0.619784 1_3:+2767250 Msa0096990:CDS
AATGGCTTCTCAACTATCTG+AGG 0.620100 1_3:+2773043 Msa0096990:CDS
TACACACAAGCACACAGGCT+AGG 0.622160 1_3:-2775569 None:intergenic
GCATTGCTAATGGCCAAGTG+AGG 0.623226 1_3:+2774447 Msa0096990:CDS
TGTCTGCTTGCCTAGAACAA+GGG 0.623483 1_3:+2767594 Msa0096990:CDS
TTCGCTCATTGGATAGTCGG+GGG 0.624812 1_3:-2769779 None:intergenic
GCAACAAAGGATAAAACAAG+AGG 0.626597 1_3:+2770998 Msa0096990:CDS
CAGGTGTCAAATGTGGGAGA+AGG 0.627421 1_3:+2773497 Msa0096990:intron
GCAAAGCGAGATCAAGAGGA+AGG 0.634660 1_3:+2773575 Msa0096990:CDS
ATGAGAAGTCCTTGCAACGG+TGG 0.637273 1_3:+2772543 Msa0096990:CDS
TTGGAACAAACCACCAACAA+GGG 0.639622 1_3:-2766764 None:intergenic
GAACGGGCCTTCACTAACCG+TGG 0.642327 1_3:+2773077 Msa0096990:CDS
GGAAAAGGAGCCATCATCAG+TGG 0.643577 1_3:+2774652 Msa0096990:CDS
CGAAACTGGCTTGGCCAATG+TGG 0.646367 1_3:-2773640 None:intergenic
GGCAATGTGATTAGTGCACT+CGG 0.650131 1_3:+2768181 Msa0096990:CDS
CAAGTCTTGAAAATGTGTCG+AGG 0.654976 1_3:+2775408 Msa0096990:three_prime_UTR
ATCAGAACGAGCTAAACGAA+CGG 0.657828 1_3:+2768013 Msa0096990:CDS
AGAAACACATTCATCAAACA+TGG 0.658773 1_3:-2766740 None:intergenic
ACAGGAGTTCACATTAACAA+AGG 0.663310 1_3:+2768145 Msa0096990:intron
CGGACAAACACACAAATCAG+AGG 0.669402 1_3:+2770635 Msa0096990:CDS
ACACAGACAATGTGAGTGCG+AGG 0.669712 1_3:-2765718 None:intergenic
TCATTTACACACAAGCACAC+AGG 0.673880 1_3:-2775574 None:intergenic
AAACAGCGCAAATATACACC+CGG 0.676738 1_3:+2774425 Msa0096990:CDS
TGTGATGGTGAAGATGGCAT+GGG 0.679124 1_3:-2767886 None:intergenic
GCAATGAGAAGTCCTTGCAA+CGG 0.682235 1_3:+2772540 Msa0096990:CDS
ATACTACAAATGGACATACA+GGG 0.690476 1_3:+2767465 Msa0096990:CDS
AGATTGTTGTGTGAAAGTTG+CGG 0.690879 1_3:+2765779 Msa0096990:CDS
ACCACCTATACAAATTCGCG+AGG 0.693589 1_3:+2767508 Msa0096990:CDS
TGAGGCAAAGTATGTGAACG+TGG 0.706746 1_3:-2774762 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTGTTTTGAAAAATT+CGG + chr1_3:2765680-2765699 Msa0096990:five_prime_UTR 10.0%
!!! AAATGATTTATGAATTTTTA+TGG + chr1_3:2766472-2766491 Msa0096990:intron 10.0%
!!! TATTTTATCTGATATAAAAA+TGG - chr1_3:2766880-2766899 None:intergenic 10.0%
!!! TTAATATTTTCTCAAATTTT+CGG + chr1_3:2769552-2769571 Msa0096990:intron 10.0%
!!! ATTTTATTAACATACATATT+CGG + chr1_3:2770337-2770356 Msa0096990:intron 10.0%
!! AAAACAAAAACAAAAAATAT+TGG - chr1_3:2772021-2772040 None:intergenic 10.0%
!!! ATATTTTTTGTTTTTGTTTT+TGG + chr1_3:2772021-2772040 Msa0096990:intron 10.0%
!! CAATTACAATATTAAAAAAA+GGG - chr1_3:2772389-2772408 None:intergenic 10.0%
!! ACAATTACAATATTAAAAAA+AGG - chr1_3:2772390-2772409 None:intergenic 10.0%
!!! TTTTTGTTTATTTTGATTAT+GGG - chr1_3:2773847-2773866 None:intergenic 10.0%
!!! ATTTTTGTTTATTTTGATTA+TGG - chr1_3:2773848-2773867 None:intergenic 10.0%
!! TAAATAAATAAACAAGTAAA+GGG - chr1_3:2774914-2774933 None:intergenic 10.0%
!! ATAAATAAATAAACAAGTAA+AGG - chr1_3:2774915-2774934 None:intergenic 10.0%
!!! ACTATATTATATTTTTGGTT+GGG + chr1_3:2766352-2766371 Msa0096990:intron 15.0%
!!! TTTAAGTTGTTTATATAATC+AGG - chr1_3:2766840-2766859 None:intergenic 15.0%
!!! TTTTATTTGTTTTATCTTCT+TGG - chr1_3:2768512-2768531 None:intergenic 15.0%
!! CATGAAAAAAAAATGTATAA+AGG + chr1_3:2768532-2768551 Msa0096990:intron 15.0%
!! TAAAACATATCAAATATTCA+CGG + chr1_3:2768755-2768774 Msa0096990:intron 15.0%
!!! TTTCAATATTTTCCTATAAT+AGG + chr1_3:2769161-2769180 Msa0096990:intron 15.0%
!! CATGTTTATTATGATAATAA+AGG - chr1_3:2769633-2769652 None:intergenic 15.0%
!! TAATTATATTACTTATCACA+AGG + chr1_3:2770246-2770265 Msa0096990:intron 15.0%
!! AATTATATTACTTATCACAA+GGG + chr1_3:2770247-2770266 Msa0096990:intron 15.0%
!!! TTCATGATTATTTTTTATTC+TGG - chr1_3:2770293-2770312 None:intergenic 15.0%
!! GAAAAAAATATACAAAAAAG+AGG - chr1_3:2771087-2771106 None:intergenic 15.0%
!!! GTATATTTTTTTCATTTCAT+TGG + chr1_3:2771094-2771113 Msa0096990:intron 15.0%
!!! AATTTTGGTAGAAAATTAAT+TGG - chr1_3:2771163-2771182 None:intergenic 15.0%
!! CAAAAATATTAAGTAGAATA+AGG - chr1_3:2771533-2771552 None:intergenic 15.0%
!!! TTCTTTAGAAAAAGAATTAA+AGG + chr1_3:2771976-2771995 Msa0096990:intron 15.0%
!! AAATAACTGAATATTTATTC+AGG + chr1_3:2772077-2772096 Msa0096990:intron 15.0%
!! TAAAATTTCTTCATCTTTAA+AGG + chr1_3:2772461-2772480 Msa0096990:intron 15.0%
!!! AGGAATTTTTTAAATATTTG+GGG - chr1_3:2773196-2773215 None:intergenic 15.0%
!!! GAGGAATTTTTTAAATATTT+GGG - chr1_3:2773197-2773216 None:intergenic 15.0%
!!! AGAGGAATTTTTTAAATATT+TGG - chr1_3:2773198-2773217 None:intergenic 15.0%
!! AATATTTAAAAAATTCCTCT+TGG + chr1_3:2773198-2773217 Msa0096990:intron 15.0%
!! CTAAGAATTTGAAAATAAAT+TGG + chr1_3:2773698-2773717 Msa0096990:intron 15.0%
!! ACGACAATTAAATAAATTAA+CGG - chr1_3:2775018-2775037 None:intergenic 15.0%
!!! CTTTTGATATAGATTTTGAT+TGG + chr1_3:2765917-2765936 Msa0096990:intron 20.0%
!! GAAAACAACTTATAGTTTAT+AGG - chr1_3:2766207-2766226 None:intergenic 20.0%
!! CCAAAAATATAATATAGTCA+AGG - chr1_3:2766350-2766369 None:intergenic 20.0%
!!! CCTTGACTATATTATATTTT+TGG + chr1_3:2766347-2766366 Msa0096990:intron 20.0%
!!! GACTATATTATATTTTTGGT+TGG + chr1_3:2766351-2766370 Msa0096990:intron 20.0%
!! AATACTTCAACTTAAGAATT+TGG + chr1_3:2766425-2766444 Msa0096990:intron 20.0%
!! ATACTTCAACTTAAGAATTT+GGG + chr1_3:2766426-2766445 Msa0096990:intron 20.0%
!! ATAAACATGATCAAATGTAA+AGG - chr1_3:2766695-2766714 None:intergenic 20.0%
!! TTTACATTTGATCATGTTTA+TGG + chr1_3:2766694-2766713 Msa0096990:CDS 20.0%
!! TTACATTTGATCATGTTTAT+GGG + chr1_3:2766695-2766714 Msa0096990:CDS 20.0%
!! AAATTCAATCTGATTCTTTA+AGG - chr1_3:2767228-2767247 None:intergenic 20.0%
!!! CAATTATATTTTCAAAACGA+TGG - chr1_3:2767305-2767324 None:intergenic 20.0%
!!! ATGTTTTTTCAACCTATTTT+TGG + chr1_3:2767723-2767742 Msa0096990:intron 20.0%
!! TAGTTAATCAAACCAAAAAT+AGG - chr1_3:2767738-2767757 None:intergenic 20.0%
!! AAAACTAGCTAATTAATGAA+AGG - chr1_3:2767801-2767820 None:intergenic 20.0%
!! AACAAAAATAAGAGATAGAA+AGG - chr1_3:2767842-2767861 None:intergenic 20.0%
!!! CTTTTTTAACATTCTTTTGA+TGG + chr1_3:2768090-2768109 Msa0096990:intron 20.0%
!! TTGAAAAGAGACAATTATTA+GGG - chr1_3:2768125-2768144 None:intergenic 20.0%
!! TTTGAAAAGAGACAATTATT+AGG - chr1_3:2768126-2768145 None:intergenic 20.0%
!!! ATTTTTCCAAATGAATGAAA+GGG - chr1_3:2768934-2768953 None:intergenic 20.0%
!!! AATTTTTCCAAATGAATGAA+AGG - chr1_3:2768935-2768954 None:intergenic 20.0%
!! TTTGGAAAAATTGAGATTAT+TGG + chr1_3:2768943-2768962 Msa0096990:intron 20.0%
!!! CATAAATGTCTAAAATACAT+AGG - chr1_3:2768972-2768991 None:intergenic 20.0%
!! TTCAATTGCATATATTCATA+TGG + chr1_3:2769326-2769345 Msa0096990:intron 20.0%
!!! ATATATAACCATTTTATGAC+TGG + chr1_3:2769366-2769385 Msa0096990:intron 20.0%
!!! TTCAAGTGCTTTTAATTTTT+GGG - chr1_3:2770670-2770689 None:intergenic 20.0%
!! TATGTGCAAAATATTAATTG+AGG + chr1_3:2771741-2771760 Msa0096990:intron 20.0%
!!! TTTTGTTTTTGTTTTTGGTT+AGG + chr1_3:2772026-2772045 Msa0096990:intron 20.0%
!!! ATTTATTTTTAAATGCGTAC+CGG + chr1_3:2772308-2772327 Msa0096990:intron 20.0%
!! ATGATTTATTCACTAAAAGA+GGG - chr1_3:2772343-2772362 None:intergenic 20.0%
!!! TTTTAGTGAATAAATCATGA+GGG + chr1_3:2772345-2772364 Msa0096990:intron 20.0%
!! ATGTTGTAGTTACAATAAAT+GGG + chr1_3:2772415-2772434 Msa0096990:intron 20.0%
!! ATCAATAAGAAACATAGATT+AGG - chr1_3:2772656-2772675 None:intergenic 20.0%
!!! CATATATTGAAGCAAAATTT+TGG - chr1_3:2773135-2773154 None:intergenic 20.0%
!!! GAATTTTTTAAATATTTGGG+GGG - chr1_3:2773194-2773213 None:intergenic 20.0%
!!! GGAATTTTTTAAATATTTGG+GGG - chr1_3:2773195-2773214 None:intergenic 20.0%
!!! AGACCATTTATTTTATTCAT+AGG + chr1_3:2773309-2773328 Msa0096990:intron 20.0%
!!! TTTCTTTTGAATTTTAAGAC+AGG - chr1_3:2773673-2773692 None:intergenic 20.0%
!! AGATTTATAGTTTCATTCTA+GGG - chr1_3:2773757-2773776 None:intergenic 20.0%
!! TAGATTTATAGTTTCATTCT+AGG - chr1_3:2773758-2773777 None:intergenic 20.0%
!! ATTTATAGATCAAAGTAGAA+AGG + chr1_3:2774481-2774500 Msa0096990:CDS 20.0%
!! CATAACAATTAAAATACTAG+TGG - chr1_3:2774518-2774537 None:intergenic 20.0%
!!! TAATTGTTATGTCTTTTCAT+TGG + chr1_3:2774527-2774546 Msa0096990:intron 20.0%
!! ATATAATTTGAAAGCTTGTA+TGG - chr1_3:2774960-2774979 None:intergenic 20.0%
!! CGACAATTAAATAAATTAAC+GGG - chr1_3:2775017-2775036 None:intergenic 20.0%
!! TATTTCCAGACAAATTATAT+TGG + chr1_3:2775326-2775345 Msa0096990:three_prime_UTR 20.0%
!!! AATTTCCAATATAATTTGTC+TGG - chr1_3:2775334-2775353 None:intergenic 20.0%
!!! TTTTCTTACAACTTTTGTAA+AGG + chr1_3:2775660-2775679 Msa0096990:three_prime_UTR 20.0%
!!! TTTCTTACAACTTTTGTAAA+GGG + chr1_3:2775661-2775680 Msa0096990:three_prime_UTR 20.0%
!!! ATTTTGATTGGTGAATCTAA+GGG + chr1_3:2765929-2765948 Msa0096990:intron 25.0%
!! AAGAAGATTGATTCTCAATA+TGG + chr1_3:2765983-2766002 Msa0096990:intron 25.0%
!!! GATTTGGATGTTAACTTTTT+TGG + chr1_3:2766038-2766057 Msa0096990:intron 25.0%
!!! TTTTTTGGTCATAGATTGAT+TGG + chr1_3:2766053-2766072 Msa0096990:intron 25.0%
!!! TTTTTGGTCATAGATTGATT+GGG + chr1_3:2766054-2766073 Msa0096990:intron 25.0%
!! TGTTTTCATAAGCTATTCTT+AGG + chr1_3:2766220-2766239 Msa0096990:intron 25.0%
!!! TATTATATTTTTGGTTGGGT+TGG + chr1_3:2766356-2766375 Msa0096990:intron 25.0%
!! TTATGACAAGCTATTTCAAA+GGG - chr1_3:2766590-2766609 None:intergenic 25.0%
!! ATTATGACAAGCTATTTCAA+AGG - chr1_3:2766591-2766610 None:intergenic 25.0%
! ATTAAGTACCTGAAAAGTTT+GGG + chr1_3:2766617-2766636 Msa0096990:intron 25.0%
! GCTAATTATTACTATGATAC+AGG + chr1_3:2766651-2766670 Msa0096990:intron 25.0%
! AAGCTATCTTGAATAACTTA+CGG + chr1_3:2766940-2766959 Msa0096990:intron 25.0%
!!! TTGGTTTGATTAACTAGTTT+TGG + chr1_3:2767742-2767761 Msa0096990:intron 25.0%
! ATTCATGGTATCATTTAAAC+TGG - chr1_3:2767949-2767968 None:intergenic 25.0%
! ACAAAGATAATCTTCATTCA+TGG - chr1_3:2767964-2767983 None:intergenic 25.0%
!! ATAATTGTCTCTTTTCAAAC+AGG + chr1_3:2768127-2768146 Msa0096990:intron 25.0%
! GTAAGTTTACTATCTCTATA+AGG - chr1_3:2768241-2768260 None:intergenic 25.0%
! TTTCAACATTGTAATGTAGA+TGG - chr1_3:2768326-2768345 None:intergenic 25.0%
! TGTAAATCTGTATCTTACTA+CGG + chr1_3:2768419-2768438 Msa0096990:intron 25.0%
! ATGATAGGAGGAAAAATATT+GGG - chr1_3:2768712-2768731 None:intergenic 25.0%
! AATGATAGGAGGAAAAATAT+TGG - chr1_3:2768713-2768732 None:intergenic 25.0%
!! AATATTTTTCCTCCTATCAT+TGG + chr1_3:2768712-2768731 Msa0096990:intron 25.0%
!! ATTTTCCTATAATAGGTTAG+TGG + chr1_3:2769168-2769187 Msa0096990:intron 25.0%
! CAGAATAAAAACACATATCT+AGG - chr1_3:2769580-2769599 None:intergenic 25.0%
!!! CTAGATATGTGTTTTTATTC+TGG + chr1_3:2769578-2769597 Msa0096990:intron 25.0%
!!! TGTGTTTTTATTCTGGTATT+TGG + chr1_3:2769585-2769604 Msa0096990:intron 25.0%
!!! GTGTTTTTATTCTGGTATTT+GGG + chr1_3:2769586-2769605 Msa0096990:intron 25.0%
! TGTACAATATAAAGACTGAT+GGG + chr1_3:2769731-2769750 Msa0096990:CDS 25.0%
!!! ATACAATTACCAATTTTAGC+AGG + chr1_3:2769941-2769960 Msa0096990:intron 25.0%
!!! TACAATTACCAATTTTAGCA+GGG + chr1_3:2769942-2769961 Msa0096990:intron 25.0%
! ATAATCATGAAAACATCAAG+TGG + chr1_3:2770302-2770321 Msa0096990:intron 25.0%
!!! CTTCAAGTGCTTTTAATTTT+TGG - chr1_3:2770671-2770690 None:intergenic 25.0%
! AATATATGAATGCTAGATTC+TGG + chr1_3:2770781-2770800 Msa0096990:intron 25.0%
! TAGATTGTATTTCATCTTGA+AGG - chr1_3:2770880-2770899 None:intergenic 25.0%
!! TGAAGCAATTGTTTCAATTT+TGG - chr1_3:2771178-2771197 None:intergenic 25.0%
! GCAAACATATAGTTAATAGA+AGG - chr1_3:2771402-2771421 None:intergenic 25.0%
! GAGATTGAACTATATATCAT+TGG + chr1_3:2771591-2771610 Msa0096990:intron 25.0%
! TTACATGAGTACATCTTAAA+TGG - chr1_3:2771654-2771673 None:intergenic 25.0%
!! ATTTAAGATGTACTCATGTA+AGG + chr1_3:2771653-2771672 Msa0096990:intron 25.0%
! AAAGTAATTGTTGCTGAAAT+TGG - chr1_3:2771693-2771712 None:intergenic 25.0%
! AAAGAACATATGAATAACGA+AGG - chr1_3:2771787-2771806 None:intergenic 25.0%
!! TGACAACATGTCATTTAATT+TGG - chr1_3:2771924-2771943 None:intergenic 25.0%
!!! CTTTCAAGTTTTTTAAGCTA+AGG + chr1_3:2772220-2772239 Msa0096990:intron 25.0%
! CATGATTTATTCACTAAAAG+AGG - chr1_3:2772344-2772363 None:intergenic 25.0%
!! CTTTTAGTGAATAAATCATG+AGG + chr1_3:2772344-2772363 Msa0096990:intron 25.0%
! CATGTTGTAGTTACAATAAA+TGG + chr1_3:2772414-2772433 Msa0096990:intron 25.0%
!! GATATTTTCAAAAAGTGAAG+AGG - chr1_3:2772857-2772876 None:intergenic 25.0%
! CCTCCTATGAATAAAATAAA+TGG - chr1_3:2773315-2773334 None:intergenic 25.0%
!!! CCATTTATTTTATTCATAGG+AGG + chr1_3:2773312-2773331 Msa0096990:intron 25.0%
! ATAAAGAAGTAGAGATATAG+AGG + chr1_3:2773402-2773421 Msa0096990:intron 25.0%
! TAAAGAAGTAGAGATATAGA+GGG + chr1_3:2773403-2773422 Msa0096990:intron 25.0%
! TGTATGAAATGTTAAACTAC+AGG + chr1_3:2773478-2773497 Msa0096990:intron 25.0%
! AGAAATGAAAGATCAAATCA+GGG + chr1_3:2773533-2773552 Msa0096990:CDS 25.0%
! ACTATCAAAAGTAACAACTT+AGG + chr1_3:2773782-2773801 Msa0096990:intron 25.0%
!! TTATAGTTGTCATTTCTATG+AGG - chr1_3:2773997-2774016 None:intergenic 25.0%
!!! GGGATGTCTAAAATTTTATT+TGG - chr1_3:2774118-2774137 None:intergenic 25.0%
! TATATGAAATCCGGTAAATA+GGG - chr1_3:2774138-2774157 None:intergenic 25.0%
! ATATATGAAATCCGGTAAAT+AGG - chr1_3:2774139-2774158 None:intergenic 25.0%
! TAATTCAATTCAAATGGAAG+TGG + chr1_3:2774676-2774695 Msa0096990:CDS 25.0%
!! TATCAAATTCACTTGATTTG+AGG - chr1_3:2774783-2774802 None:intergenic 25.0%
! AAGAACATTTAACTAAGTAC+AGG + chr1_3:2774882-2774901 Msa0096990:three_prime_UTR 25.0%
!! ATATCTGTGTTAAATGGATT+CGG - chr1_3:2774987-2775006 None:intergenic 25.0%
! TGATACATATCTGTGTTAAA+TGG - chr1_3:2774993-2775012 None:intergenic 25.0%
!! ATCTTAGCTTCTTTTATAGA+TGG + chr1_3:2775070-2775089 Msa0096990:intron 25.0%
!!! TGGAATCATTTTCAAGATTT+GGG - chr1_3:2775190-2775209 None:intergenic 25.0%
!!! ATGGAATCATTTTCAAGATT+TGG - chr1_3:2775191-2775210 None:intergenic 25.0%
!! CAATTATTTGATAACTGTCA+GGG - chr1_3:2775265-2775284 None:intergenic 25.0%
!! TCAATTATTTGATAACTGTC+AGG - chr1_3:2775266-2775285 None:intergenic 25.0%
! AGTTATCAAATAATTGAGCA+TGG + chr1_3:2775269-2775288 Msa0096990:three_prime_UTR 25.0%
!! TCCTTAATGTTATGTTTCTA+TGG + chr1_3:2775439-2775458 Msa0096990:three_prime_UTR 25.0%
! ACCATAGAAACATAACATTA+AGG - chr1_3:2775443-2775462 None:intergenic 25.0%
!! CTTTTACAACAAAATCTGTA+TGG - chr1_3:2775635-2775654 None:intergenic 25.0%
!!! CATACAGATTTTGTTGTAAA+AGG + chr1_3:2775633-2775652 Msa0096990:three_prime_UTR 25.0%
! ATTGTTGTTGGAATAACTGT+GGG - chr1_3:2765584-2765603 None:intergenic 30.0%
! GTTTTTCTTCTCATTGTTGT+TGG - chr1_3:2765596-2765615 None:intergenic 30.0%
TCAATAAGCATGTAGCATAT+TGG - chr1_3:2765618-2765637 None:intergenic 30.0%
! AGCTTCTCATCATTGATTAA+TGG - chr1_3:2765816-2765835 None:intergenic 30.0%
!! ATTGTGTAACTGTTGTTTCT+GGG + chr1_3:2765850-2765869 Msa0096990:CDS 30.0%
!!! GATTTTGATTGGTGAATCTA+AGG + chr1_3:2765928-2765947 Msa0096990:intron 30.0%
TTCAATTACGCAATCAATCA+TGG - chr1_3:2765965-2765984 None:intergenic 30.0%
! AGATTGATTGGGATATTTTG+AGG + chr1_3:2766065-2766084 Msa0096990:intron 30.0%
AATAAGCTGGAAACAACTTA+TGG + chr1_3:2766253-2766272 Msa0096990:intron 30.0%
TAGTCAAGGTCTATTTCAAT+TGG - chr1_3:2766336-2766355 None:intergenic 30.0%
TCATTCATTTACCAATCACT+TGG - chr1_3:2766529-2766548 None:intergenic 30.0%
CATTAAGTACCTGAAAAGTT+TGG + chr1_3:2766616-2766635 Msa0096990:intron 30.0%
AGAAACACATTCATCAAACA+TGG - chr1_3:2766743-2766762 None:intergenic 30.0%
ACTTATTTGAACTTATCTCC+TGG - chr1_3:2767044-2767063 None:intergenic 30.0%
CTACTGCAGTTATTTATCTT+TGG + chr1_3:2767073-2767092 Msa0096990:intron 30.0%
AAACAAGGAACTCATAACTT+GGG - chr1_3:2767192-2767211 None:intergenic 30.0%
TAAACAAGGAACTCATAACT+TGG - chr1_3:2767193-2767212 None:intergenic 30.0%
! GGTCTCAATTTTACTAAACA+AGG - chr1_3:2767207-2767226 None:intergenic 30.0%
TGCTGTAACAAAGTTAACAA+CGG - chr1_3:2767277-2767296 None:intergenic 30.0%
!! AGTATCTGGTTTGCTAATAA+AGG - chr1_3:2767450-2767469 None:intergenic 30.0%
ATACTACAAATGGACATACA+GGG + chr1_3:2767465-2767484 Msa0096990:CDS 30.0%
AATAGATAACTAACCTGGAT+TGG - chr1_3:2767658-2767677 None:intergenic 30.0%
TATGCAGTTAAAAGTAGAGA+AGG - chr1_3:2767683-2767702 None:intergenic 30.0%
! TTCTGATGGTTTACGTTTTA+AGG + chr1_3:2768037-2768056 Msa0096990:CDS 30.0%
GATGAGAAAAAGAGAAAAGA+AGG + chr1_3:2768205-2768224 Msa0096990:CDS 30.0%
ATAGAGATAGTAAACTTACC+AGG + chr1_3:2768242-2768261 Msa0096990:CDS 30.0%
! GCATGCTAATTTTGCATAAA+AGG - chr1_3:2768355-2768374 None:intergenic 30.0%
! GTAAAGCTAAATGATTTTGC+AGG + chr1_3:2768626-2768645 Msa0096990:intron 30.0%
AAAATATTGGGATAGAAGCA+AGG - chr1_3:2768700-2768719 None:intergenic 30.0%
TTATGAAGCTAATCACTTGA+GGG - chr1_3:2768738-2768757 None:intergenic 30.0%
TTTATGAAGCTAATCACTTG+AGG - chr1_3:2768739-2768758 None:intergenic 30.0%
TACTTACAACAGGCTTATTT+CGG - chr1_3:2768892-2768911 None:intergenic 30.0%
TTTATCCAGATACTTACAAC+AGG - chr1_3:2768902-2768921 None:intergenic 30.0%
TTTGTTCCCTTTCATTCATT+TGG + chr1_3:2768925-2768944 Msa0096990:intron 30.0%
! CAGGTATTCAGTTTCTATTT+TGG + chr1_3:2769125-2769144 Msa0096990:intron 30.0%
TGTAACCACTAACCTATTAT+AGG - chr1_3:2769176-2769195 None:intergenic 30.0%
AGGTTAGTGGTTACATTTAA+TGG + chr1_3:2769181-2769200 Msa0096990:intron 30.0%
CTACATAACCAGTCATAAAA+TGG - chr1_3:2769377-2769396 None:intergenic 30.0%
!! CATTTTATGACTGGTTATGT+AGG + chr1_3:2769375-2769394 Msa0096990:intron 30.0%
TACGATATTCATGAAGTTCA+CGG - chr1_3:2769450-2769469 None:intergenic 30.0%
! TCATCTGCTGATAATCTTTT+TGG + chr1_3:2769524-2769543 Msa0096990:intron 30.0%
GTGTACAATATAAAGACTGA+TGG + chr1_3:2769730-2769749 Msa0096990:CDS 30.0%
!! TAAAGACTGATGGGTTAAAA+AGG + chr1_3:2769740-2769759 Msa0096990:CDS 30.0%
! ACTTGACTAAATTTAAGACG+TGG - chr1_3:2769887-2769906 None:intergenic 30.0%
!! ACAATTACCAATTTTAGCAG+GGG + chr1_3:2769943-2769962 Msa0096990:intron 30.0%
ACATGAATTGAATAAACGCT+TGG + chr1_3:2770039-2770058 Msa0096990:CDS 30.0%
! CTTTGCTTTAGCTTACAAAA+TGG + chr1_3:2770160-2770179 Msa0096990:intron 30.0%
TGAAAAACACTATTTCACCT+GGG - chr1_3:2770694-2770713 None:intergenic 30.0%
ATGAAAAACACTATTTCACC+TGG - chr1_3:2770695-2770714 None:intergenic 30.0%
ACAATCTATAAAAGCCCAAA+AGG + chr1_3:2770892-2770911 Msa0096990:CDS 30.0%
! AGTACAACAATCAACCTTTT+GGG - chr1_3:2770909-2770928 None:intergenic 30.0%
! AAGTACAACAATCAACCTTT+TGG - chr1_3:2770910-2770929 None:intergenic 30.0%
GCTTGAACTTAAATGATATG+TGG + chr1_3:2771248-2771267 Msa0096990:intron 30.0%
! ATTGAGTTGTTTGAAAGCTT+TGG - chr1_3:2771278-2771297 None:intergenic 30.0%
AGCTTTCAAACAACTCAATT+TGG + chr1_3:2771279-2771298 Msa0096990:intron 30.0%
GCTTTCAAACAACTCAATTT+GGG + chr1_3:2771280-2771299 Msa0096990:intron 30.0%
GCTAAACAGTTAAAGAAAGA+AGG + chr1_3:2771420-2771439 Msa0096990:intron 30.0%
GAAGAAGAAACGAATTTGAA+AGG + chr1_3:2771442-2771461 Msa0096990:CDS 30.0%
!! AGTATTCTAAAGTTGTTGGA+TGG + chr1_3:2771504-2771523 Msa0096990:intron 30.0%
! TAACAGTTCCTTTAACTTCT+TGG - chr1_3:2772139-2772158 None:intergenic 30.0%
! TTTTAAGCTAAGGATACAGA+AGG + chr1_3:2772230-2772249 Msa0096990:intron 30.0%
!!! AAGGTGCTTGTTTTAATAGT+TGG + chr1_3:2772249-2772268 Msa0096990:intron 30.0%
!! TCTCTCTAAAGCATACAATA+GGG - chr1_3:2772279-2772298 None:intergenic 30.0%
!! TATTGTATGCTTTAGAGAGA+GGG + chr1_3:2772279-2772298 Msa0096990:intron 30.0%
TTCATTTACTTGTTTCAGCA+TGG - chr1_3:2772747-2772766 None:intergenic 30.0%
! TTTTCAAAAAGTGAAGAGGT+AGG - chr1_3:2772853-2772872 None:intergenic 30.0%
CATATCATCTAATTCACTTG+TGG + chr1_3:2773019-2773038 Msa0096990:CDS 30.0%
GAGAAATGAAAGATCAAATC+AGG + chr1_3:2773532-2773551 Msa0096990:CDS 30.0%
AAGTAACAACTTAGGTAAGT+AGG + chr1_3:2773790-2773809 Msa0096990:intron 30.0%
!! AATTCCACTATTTTTCCCTT+AGG + chr1_3:2773894-2773913 Msa0096990:intron 30.0%
!! ATTCCACTATTTTTCCCTTA+GGG + chr1_3:2773895-2773914 Msa0096990:intron 30.0%
CATAATTTCAGTATCCCTAA+GGG - chr1_3:2773912-2773931 None:intergenic 30.0%
ACATAATTTCAGTATCCCTA+AGG - chr1_3:2773913-2773932 None:intergenic 30.0%
! CATTTTCAGATATCAAGACA+GGG - chr1_3:2773938-2773957 None:intergenic 30.0%
! ACATTTTCAGATATCAAGAC+AGG - chr1_3:2773939-2773958 None:intergenic 30.0%
TGTCTTGATATCTGAAAATG+TGG + chr1_3:2773938-2773957 Msa0096990:intron 30.0%
! TTTTAGACATCCCTATTTAC+CGG + chr1_3:2774125-2774144 Msa0096990:intron 30.0%
CTACGAAGATATATGAAATC+CGG - chr1_3:2774147-2774166 None:intergenic 30.0%
ATCACAAAATATCAGCTACA+AGG - chr1_3:2774211-2774230 None:intergenic 30.0%
CATGTATCTTATACTTGTGT+TGG + chr1_3:2774254-2774273 Msa0096990:intron 30.0%
GACTAATTAGCTAATGACAA+TGG - chr1_3:2774309-2774328 None:intergenic 30.0%
! ACAGAGTGTTTCAATGAATT+TGG - chr1_3:2774359-2774378 None:intergenic 30.0%
!! AGATTTGTTATTGATGCAGA+TGG + chr1_3:2774560-2774579 Msa0096990:intron 30.0%
AGTGGCTAATTCAATTCAAA+TGG + chr1_3:2774670-2774689 Msa0096990:CDS 30.0%
AAAGAAGCTAAGATTGTGTT+TGG - chr1_3:2775064-2775083 None:intergenic 30.0%
AGTATATACCTCTATAAGTC+TGG + chr1_3:2775154-2775173 Msa0096990:three_prime_UTR 30.0%
GTATATACCTCTATAAGTCT+GGG + chr1_3:2775155-2775174 Msa0096990:three_prime_UTR 30.0%
! TTTTGTCACATAGTAACAGA+AGG + chr1_3:2775520-2775539 Msa0096990:three_prime_UTR 30.0%
AGAGTAGATATAGTTGAAGG+AGG - chr1_3:2765551-2765570 None:intergenic 35.0%
GAGAGAGTAGATATAGTTGA+AGG - chr1_3:2765554-2765573 None:intergenic 35.0%
! CATTGTTGTTGGAATAACTG+TGG - chr1_3:2765585-2765604 None:intergenic 35.0%
AGATTGTTGTGTGAAAGTTG+CGG + chr1_3:2765779-2765798 Msa0096990:CDS 35.0%
ATCAATGATGAGAAGCTTCA+AGG + chr1_3:2765819-2765838 Msa0096990:CDS 35.0%
!! GATTGTGTAACTGTTGTTTC+TGG + chr1_3:2765849-2765868 Msa0096990:CDS 35.0%
! CTGATGATGCTTACTTGATT+TGG + chr1_3:2766022-2766041 Msa0096990:intron 35.0%
!!! GGATATTTTGAGGTCATGTT+TGG + chr1_3:2766075-2766094 Msa0096990:intron 35.0%
AGGAGCTTATGAAAATAAGC+TGG + chr1_3:2766240-2766259 Msa0096990:intron 35.0%
!!! TATTTTTGGTTGGGTTGGTT+TGG + chr1_3:2766361-2766380 Msa0096990:intron 35.0%
!!! ATTTTTGGTTGGGTTGGTTT+GGG + chr1_3:2766362-2766381 Msa0096990:intron 35.0%
! GAACACTTAAGTGAAGTGTT+TGG + chr1_3:2766402-2766421 Msa0096990:intron 35.0%
AATCTTACATGCCAAGTGAT+TGG + chr1_3:2766515-2766534 Msa0096990:intron 35.0%
TGGAAGGGATGAGAATTTAA+GGG - chr1_3:2766554-2766573 None:intergenic 35.0%
TTGGAAGGGATGAGAATTTA+AGG - chr1_3:2766555-2766574 None:intergenic 35.0%
! GGAAGAAAACTTGTTTGGAA+GGG - chr1_3:2766569-2766588 None:intergenic 35.0%
! CAAAGGGAAGAAAACTTGTT+TGG - chr1_3:2766574-2766593 None:intergenic 35.0%
! TGATTCAACCCAAACTTTTC+AGG - chr1_3:2766628-2766647 None:intergenic 35.0%
ACTATGATACAGGTGCAAAT+TGG + chr1_3:2766661-2766680 Msa0096990:intron 35.0%
AATGCTACTGTTCTTGCATA+TGG + chr1_3:2766793-2766812 Msa0096990:CDS 35.0%
! ATTTTCACTCTATTGCAGAC+AGG + chr1_3:2767104-2767123 Msa0096990:intron 35.0%
! TTCTGGGAAAACATACACAA+TGG + chr1_3:2767127-2767146 Msa0096990:CDS 35.0%
TCTGGGAAAACATACACAAT+GGG + chr1_3:2767128-2767147 Msa0096990:CDS 35.0%
TCTAAAGATGGTTATCAAGC+AGG + chr1_3:2767158-2767177 Msa0096990:CDS 35.0%
AACAAGGAACTCATAACTTG+GGG - chr1_3:2767191-2767210 None:intergenic 35.0%
AGAAGAAGTAAGAGATTTGC+TGG + chr1_3:2767418-2767437 Msa0096990:CDS 35.0%
!! TCTGGTTTGCTAATAAAGGA+CGG - chr1_3:2767446-2767465 None:intergenic 35.0%
AGCAAACCAGATACTACAAA+TGG + chr1_3:2767455-2767474 Msa0096990:CDS 35.0%
GTATGTCCATTTGTAGTATC+TGG - chr1_3:2767464-2767483 None:intergenic 35.0%
GATACTACAAATGGACATAC+AGG + chr1_3:2767464-2767483 Msa0096990:CDS 35.0%
ATTTGTATAGGTGGTTTACC+AGG - chr1_3:2767503-2767522 None:intergenic 35.0%
CTAATATGAACAACCAATCC+AGG + chr1_3:2767642-2767661 Msa0096990:CDS 35.0%
AGGAGAATAGATAACTAACC+TGG - chr1_3:2767663-2767682 None:intergenic 35.0%
! TCATTTAAACTGGTCTCACT+AGG - chr1_3:2767939-2767958 None:intergenic 35.0%
!!! GATGGTTTACGTTTTAAGGA+AGG + chr1_3:2768041-2768060 Msa0096990:CDS 35.0%
!!! ACGTTTTAAGGAAGGTTAGA+TGG + chr1_3:2768049-2768068 Msa0096990:intron 35.0%
!! TTTTAAGGAAGGTTAGATGG+TGG + chr1_3:2768052-2768071 Msa0096990:intron 35.0%
ACAGGAGTTCACATTAACAA+AGG + chr1_3:2768145-2768164 Msa0096990:intron 35.0%
GAATATTGAGTAACGAGAAC+TGG - chr1_3:2768381-2768400 None:intergenic 35.0%
! ATGATTTTGCAGGATTCACT+TGG + chr1_3:2768636-2768655 Msa0096990:intron 35.0%
AACAGCAGAACTGTTATGAT+AGG + chr1_3:2768663-2768682 Msa0096990:CDS 35.0%
!! TGCATACTTCAAAGTGTTGA+GGG - chr1_3:2768852-2768871 None:intergenic 35.0%
!! TTGCATACTTCAAAGTGTTG+AGG - chr1_3:2768853-2768872 None:intergenic 35.0%
ATAAGCCTGTTGTAAGTATC+TGG + chr1_3:2768894-2768913 Msa0096990:intron 35.0%
TTAAGCATCTCATTGGACAT+TGG - chr1_3:2769035-2769054 None:intergenic 35.0%
! TCGCATTTTAAGCATCTCAT+TGG - chr1_3:2769042-2769061 None:intergenic 35.0%
TCCTAACCTTGAATGTAGTT+AGG + chr1_3:2769266-2769285 Msa0096990:intron 35.0%
TCCTCAAGGAAAGAATTTCT+TGG + chr1_3:2769398-2769417 Msa0096990:CDS 35.0%
ATTATCAGCAGATGAATGAG+AGG - chr1_3:2769519-2769538 None:intergenic 35.0%
AAGGAAATCACTTGATGTAG+TGG - chr1_3:2769614-2769633 None:intergenic 35.0%
!! GCTTCAAACCTTCATTTTTC+AGG + chr1_3:2769699-2769718 Msa0096990:intron 35.0%
!!! CAAACCTTCATTTTTCAGGA+CGG + chr1_3:2769703-2769722 Msa0096990:intron 35.0%
! GTAAGGCACACATTTAGAAT+TGG - chr1_3:2769856-2769875 None:intergenic 35.0%
CTCAAAACTTCTATGACTCA+TGG + chr1_3:2769913-2769932 Msa0096990:intron 35.0%
!! AATTTTAGCAGGGGATTCAA+GGG + chr1_3:2769952-2769971 Msa0096990:intron 35.0%
TTGAAGAAGTAGCAAAAGAG+TGG + chr1_3:2769978-2769997 Msa0096990:CDS 35.0%
TGAAGAAGTAGCAAAAGAGT+GGG + chr1_3:2769979-2769998 Msa0096990:CDS 35.0%
TACACTTCTGCAAAACAGTA+TGG + chr1_3:2770006-2770025 Msa0096990:CDS 35.0%
!! CATTGATTTAAGGGGTTATC+AGG - chr1_3:2770124-2770143 None:intergenic 35.0%
! GATGAAGCTTTTTGGATCAT+CGG + chr1_3:2770381-2770400 Msa0096990:CDS 35.0%
TGCAGAATTTCTATTGAACC+TGG - chr1_3:2770474-2770493 None:intergenic 35.0%
ATTTGTGATGCAGCAAGATA+GGG + chr1_3:2770569-2770588 Msa0096990:intron 35.0%
!!! GTGCTTTTAATTTTTGGGCA+TGG - chr1_3:2770665-2770684 None:intergenic 35.0%
ACTGATGCGAATCAAGTAAA+CGG - chr1_3:2770732-2770751 None:intergenic 35.0%
CTAAATTGAATACTGTTGCC+AGG + chr1_3:2770968-2770987 Msa0096990:intron 35.0%
GCAACAAAGGATAAAACAAG+AGG + chr1_3:2770998-2771017 Msa0096990:CDS 35.0%
AACAAGAGGCAGAACAATTT+CGG + chr1_3:2771012-2771031 Msa0096990:CDS 35.0%
! TGCTCTTGAGCTTCATTTTA+AGG + chr1_3:2771124-2771143 Msa0096990:intron 35.0%
TTTGGGCAAAAATTAGAAGC+TGG + chr1_3:2771297-2771316 Msa0096990:intron 35.0%
! AGGTCAAAGAGCATATATGA+CGG - chr1_3:2771382-2771401 None:intergenic 35.0%
ACTAAATCAGCGTCAGAAAA+TGG + chr1_3:2771479-2771498 Msa0096990:CDS 35.0%
!! GGTGAGTATTCTAAAGTTGT+TGG + chr1_3:2771500-2771519 Msa0096990:intron 35.0%
!! CTCTCTCTAAAGCATACAAT+AGG - chr1_3:2772280-2772299 None:intergenic 35.0%
!! CTATTGTATGCTTTAGAGAG+AGG + chr1_3:2772278-2772297 Msa0096990:intron 35.0%
GTAGTTACAATAAATGGGAG+TGG + chr1_3:2772420-2772439 Msa0096990:intron 35.0%
ATCTAATTCACTTGTGGCAA+TGG + chr1_3:2773025-2773044 Msa0096990:CDS 35.0%
!! TTCCTCTTGGTCTTTTTATC+TGG + chr1_3:2773211-2773230 Msa0096990:intron 35.0%
AAGTAGAGATATAGAGGGAA+AGG + chr1_3:2773408-2773427 Msa0096990:intron 35.0%
TAAACTACAGGTGTCAAATG+TGG + chr1_3:2773490-2773509 Msa0096990:intron 35.0%
AAACTACAGGTGTCAAATGT+GGG + chr1_3:2773491-2773510 Msa0096990:intron 35.0%
TATCCCTAAGGGAAAAATAG+TGG - chr1_3:2773901-2773920 None:intergenic 35.0%
ACAATAATAAATCCGACCGA+AGG - chr1_3:2774179-2774198 None:intergenic 35.0%
TTCATTGACAATTGCCCAAT+GGG - chr1_3:2774588-2774607 None:intergenic 35.0%
TTTCATTGACAATTGCCCAA+TGG - chr1_3:2774589-2774608 None:intergenic 35.0%
ATGAAAAAACTAGCAGTTGC+AGG + chr1_3:2774603-2774622 Msa0096990:CDS 35.0%
ATTGAATTAGCCACTGATGA+TGG - chr1_3:2774665-2774684 None:intergenic 35.0%
TTTCTTACAACAGTGATCCT+AGG + chr1_3:2774846-2774865 Msa0096990:three_prime_UTR 35.0%
! AATTCTGACTTCCTTGTTTC+TGG + chr1_3:2775103-2775122 Msa0096990:intron 35.0%
ATGCTGTAACTAACTAGCTA+TGG - chr1_3:2775210-2775229 None:intergenic 35.0%
! GTGATTTTGCTTCTTCGTGA+TGG + chr1_3:2765746-2765765 Msa0096990:exon 40.0%
! GTTGATAGAAAATGCACCTG+AGG - chr1_3:2765879-2765898 None:intergenic 40.0%
! GGGAAGAAAACTTGTTTGGA+AGG - chr1_3:2766570-2766589 None:intergenic 40.0%
TCATCAAACATGGCAGATGA+GGG - chr1_3:2766733-2766752 None:intergenic 40.0%
TTCATCAAACATGGCAGATG+AGG - chr1_3:2766734-2766753 None:intergenic 40.0%
GAATGTGTTTCTTCCCTTGT+TGG + chr1_3:2766751-2766770 Msa0096990:CDS 40.0%
TTGGAACAAACCACCAACAA+GGG - chr1_3:2766767-2766786 None:intergenic 40.0%
!! TTGTTGGTGGTTTGTTCCAA+GGG + chr1_3:2766767-2766786 Msa0096990:CDS 40.0%
GAACAGTAGCATTATACCCT+TGG - chr1_3:2766786-2766805 None:intergenic 40.0%
TACTGTTCTTGCATATGGTC+AGG + chr1_3:2766798-2766817 Msa0096990:CDS 40.0%
AAAACATACACAATGGGCAC+TGG + chr1_3:2767134-2767153 Msa0096990:CDS 40.0%
TTAACAACGGACCTCGATAA+AGG - chr1_3:2767264-2767283 None:intergenic 40.0%
!! CTGGTTTGCTAATAAAGGAC+GGG - chr1_3:2767445-2767464 None:intergenic 40.0%
TACTCAATGACCCTTGTTCT+AGG - chr1_3:2767607-2767626 None:intergenic 40.0%
! CTCTAATGTGATGGTGAAGA+TGG - chr1_3:2767895-2767914 None:intergenic 40.0%
AAGATCTACCAAGTGCAACT+TGG - chr1_3:2767988-2768007 None:intergenic 40.0%
ATCAGAACGAGCTAAACGAA+CGG + chr1_3:2768013-2768032 Msa0096990:CDS 40.0%
AACAAAGGTCTACTAGCACT+TGG + chr1_3:2768160-2768179 Msa0096990:CDS 40.0%
! TAAACTTACCAGGCTTTTGC+AGG + chr1_3:2768252-2768271 Msa0096990:CDS 40.0%
AAATCAAACCTGCAAAAGCC+TGG - chr1_3:2768263-2768282 None:intergenic 40.0%
! ATTTTGCAGGATTCACTTGG+TGG + chr1_3:2768639-2768658 Msa0096990:intron 40.0%
GCAGAACTGTTATGATAGGT+TGG + chr1_3:2768667-2768686 Msa0096990:intron 40.0%
AATGTCAGCAGGACTTATAC+AGG - chr1_3:2768816-2768835 None:intergenic 40.0%
!! TTTTGTTTATTCTGCCCCAC+AGG + chr1_3:2768998-2769017 Msa0096990:intron 40.0%
TTGGATCTCTATTGACCTGT+GGG - chr1_3:2769016-2769035 None:intergenic 40.0%
ATTGGATCTCTATTGACCTG+TGG - chr1_3:2769017-2769036 None:intergenic 40.0%
GCCTAACTACATTCAAGGTT+AGG - chr1_3:2769270-2769289 None:intergenic 40.0%
CAGAAGCCTAACTACATTCA+AGG - chr1_3:2769275-2769294 None:intergenic 40.0%
GCCAAGAAATTCTTTCCTTG+AGG - chr1_3:2769402-2769421 None:intergenic 40.0%
GAATATCGTAGTAGATGCTC+TGG + chr1_3:2769460-2769479 Msa0096990:CDS 40.0%
TGGTGCAGTACAAAGTGAAA+AGG + chr1_3:2769480-2769499 Msa0096990:CDS 40.0%
ACATGAGTGAAAGTGAGTTC+AGG + chr1_3:2769648-2769667 Msa0096990:intron 40.0%
GTGAAAGTGAGTTCAGGATA+TGG + chr1_3:2769654-2769673 Msa0096990:intron 40.0%
TATCCAATGAGCGAAGCAAT+GGG + chr1_3:2769787-2769806 Msa0096990:CDS 40.0%
AAGACGTGGCAGATAAAGTA+AGG - chr1_3:2769873-2769892 None:intergenic 40.0%
CTTGAATCCCCTGCTAAAAT+TGG - chr1_3:2769953-2769972 None:intergenic 40.0%
!! CAATTTTAGCAGGGGATTCA+AGG + chr1_3:2769951-2769970 Msa0096990:intron 40.0%
!! CCATGGTGCATTGATTTAAG+GGG - chr1_3:2770132-2770151 None:intergenic 40.0%
!! CCCATGGTGCATTGATTTAA+GGG - chr1_3:2770133-2770152 None:intergenic 40.0%
CCCTTAAATCAATGCACCAT+GGG + chr1_3:2770130-2770149 Msa0096990:intron 40.0%
!! ACCCATGGTGCATTGATTTA+AGG - chr1_3:2770134-2770153 None:intergenic 40.0%
TTAAATCAATGCACCATGGG+TGG + chr1_3:2770133-2770152 Msa0096990:intron 40.0%
AAAGCAAAGAATACCACCCA+TGG - chr1_3:2770149-2770168 None:intergenic 40.0%
AAGCTTCATCTCAGACTGTA+TGG - chr1_3:2770371-2770390 None:intergenic 40.0%
!! CAGTCTGAGATGAAGCTTTT+TGG + chr1_3:2770373-2770392 Msa0096990:intron 40.0%
AAGGAAGATCATGGAACTTG+AGG + chr1_3:2770432-2770451 Msa0096990:CDS 40.0%
ATCTTGCTGCATCACAAATG+AGG - chr1_3:2770568-2770587 None:intergenic 40.0%
CATTTGTGATGCAGCAAGAT+AGG + chr1_3:2770568-2770587 Msa0096990:intron 40.0%
GAAGTTGAAAATCTTGCTGC+CGG + chr1_3:2770606-2770625 Msa0096990:CDS 40.0%
!! ATTAAAAGCACTTGAAGCCC+AGG + chr1_3:2770674-2770693 Msa0096990:CDS 40.0%
!! TTTGCTTTAGAAGCTGAACC+TGG - chr1_3:2770829-2770848 None:intergenic 40.0%
TCCTTTGTTGCAATTGAACC+TGG - chr1_3:2770989-2771008 None:intergenic 40.0%
GTTGTGATCAGTTATCACAC+CGG - chr1_3:2771323-2771342 None:intergenic 40.0%
GGAGTCAAGTTAATAGTGTG+TGG - chr1_3:2771359-2771378 None:intergenic 40.0%
! GTCAAAGAGCATATATGACG+GGG - chr1_3:2771380-2771399 None:intergenic 40.0%
! GGTCAAAGAGCATATATGAC+GGG - chr1_3:2771381-2771400 None:intergenic 40.0%
GTATGTGATAATACTCCCAG+AGG - chr1_3:2771848-2771867 None:intergenic 40.0%
! CTTCCTCAGTTTTTCTCTGA+AGG - chr1_3:2772104-2772123 None:intergenic 40.0%
AAAAACTGAGGAAGCTGCAA+TGG + chr1_3:2772110-2772129 Msa0096990:CDS 40.0%
AATGGCCACCAAGAAGTTAA+AGG + chr1_3:2772128-2772147 Msa0096990:CDS 40.0%
! CAGTTCCTTTAACTTCTTGG+TGG - chr1_3:2772136-2772155 None:intergenic 40.0%
AAGTCATACCTGATGCATCT+CGG - chr1_3:2772182-2772201 None:intergenic 40.0%
TTTAAATGCGTACCGGAAAG+TGG + chr1_3:2772315-2772334 Msa0096990:intron 40.0%
TAAAAGAGGGTTCCACTTTC+CGG - chr1_3:2772330-2772349 None:intergenic 40.0%
!! GTAAATGAATTTGCTGCCAG+TGG + chr1_3:2772758-2772777 Msa0096990:CDS 40.0%
CATTCTTGCATTTAGCGACA+TGG - chr1_3:2772967-2772986 None:intergenic 40.0%
CATGTCGCTAAATGCAAGAA+TGG + chr1_3:2772965-2772984 Msa0096990:CDS 40.0%
AATGGCTTCTCAACTATCTG+AGG + chr1_3:2773043-2773062 Msa0096990:CDS 40.0%
GTCCAGATAAAAAGACCAAG+AGG - chr1_3:2773216-2773235 None:intergenic 40.0%
!! CTTGGTCTTTTTATCTGGAC+AGG + chr1_3:2773216-2773235 Msa0096990:intron 40.0%
TCAAATGTGGGAGAAGGATA+TGG + chr1_3:2773503-2773522 Msa0096990:CDS 40.0%
GATCAAATCAGGGAACTTGT+AGG + chr1_3:2773543-2773562 Msa0096990:CDS 40.0%
TTGCAGTGATGTCTTCCAAA+AGG + chr1_3:2773721-2773740 Msa0096990:intron 40.0%
! TAGGGCTATATCTGACCTTT+TGG - chr1_3:2773739-2773758 None:intergenic 40.0%
! TGATTATGGGTTGACTCTGT+TGG - chr1_3:2773834-2773853 None:intergenic 40.0%
TTCGTAGTGACTATCTCCTT+CGG + chr1_3:2774160-2774179 Msa0096990:intron 40.0%
AGTTTCCCTGTTGAAGTCAA+GGG - chr1_3:2774334-2774353 None:intergenic 40.0%
CATCAAGGAACCTTTATCTC+CGG + chr1_3:2774385-2774404 Msa0096990:CDS 40.0%
AAACAGCGCAAATATACACC+CGG + chr1_3:2774425-2774444 Msa0096990:CDS 40.0%
AGCCATGGAAACTTTCTGAA+CGG + chr1_3:2774703-2774722 Msa0096990:CDS 40.0%
ATCCGTTCAGAAAGTTTCCA+TGG - chr1_3:2774708-2774727 None:intergenic 40.0%
ATGAGACTATGATGAGAGCA+AGG + chr1_3:2774739-2774758 Msa0096990:CDS 40.0%
GAAATCTAAGCCACGACAAA+TGG - chr1_3:2774820-2774839 None:intergenic 40.0%
TCTTTCTATGTCTTGTGCCT+AGG - chr1_3:2774866-2774885 None:intergenic 40.0%
! GTATTGACCCAGACTTATAG+AGG - chr1_3:2775165-2775184 None:intergenic 40.0%
!! AGCATACAGAGCATTTTGTG+AGG + chr1_3:2775225-2775244 Msa0096990:three_prime_UTR 40.0%
ATGGAAGATAGTTGCTTGCT+TGG + chr1_3:2775288-2775307 Msa0096990:three_prime_UTR 40.0%
!! TTCTCCTTCTAGTGTTGGTA+TGG - chr1_3:2775364-2775383 None:intergenic 40.0%
! CCTTTTTCTCCTTCTAGTGT+TGG - chr1_3:2775369-2775388 None:intergenic 40.0%
CCAACACTAGAAGGAGAAAA+AGG + chr1_3:2775366-2775385 Msa0096990:three_prime_UTR 40.0%
CAAGTCTTGAAAATGTGTCG+AGG + chr1_3:2775408-2775427 Msa0096990:three_prime_UTR 40.0%
TCATTTACACACAAGCACAC+AGG - chr1_3:2775577-2775596 None:intergenic 40.0%
TGGTGAATCTAAGGGAGATC+TGG + chr1_3:2765937-2765956 Msa0096990:intron 45.0%
!! GGGTTGGTTTGGGTAATTGT+TGG + chr1_3:2766372-2766391 Msa0096990:intron 45.0%
! GATCATGTTTATGGGAGCAC+TGG + chr1_3:2766703-2766722 Msa0096990:CDS 45.0%
TGTGTTTCTTCCCTTGTTGG+TGG + chr1_3:2766754-2766773 Msa0096990:CDS 45.0%
CTTGGAACAAACCACCAACA+AGG - chr1_3:2766768-2766787 None:intergenic 45.0%
!! CTTGTTGGTGGTTTGTTCCA+AGG + chr1_3:2766766-2766785 Msa0096990:CDS 45.0%
TGGTCAGGTATAGTTACTGC+AGG + chr1_3:2766813-2766832 Msa0096990:intron 45.0%
AGTCTACACGTGCTTATACC+AGG + chr1_3:2767023-2767042 Msa0096990:intron 45.0%
ACTCTATTGCAGACAGGTTC+TGG + chr1_3:2767110-2767129 Msa0096990:intron 45.0%
CTCTATTGCAGACAGGTTCT+GGG + chr1_3:2767111-2767130 Msa0096990:intron 45.0%
ACAGGGAAAGTGACTATTCC+TGG + chr1_3:2767482-2767501 Msa0096990:CDS 45.0%
ACCACCTATACAAATTCGCG+AGG + chr1_3:2767508-2767527 Msa0096990:CDS 45.0%
GAAGCCTCGCGAATTTGTAT+AGG - chr1_3:2767515-2767534 None:intergenic 45.0%
CAAATTCGCGAGGCTTCAAA+TGG + chr1_3:2767518-2767537 Msa0096990:CDS 45.0%
AATGGCGTCATTACTCTAGC+AGG + chr1_3:2767536-2767555 Msa0096990:CDS 45.0%
ATGTCTGCTTGCCTAGAACA+AGG + chr1_3:2767593-2767612 Msa0096990:CDS 45.0%
TGTCTGCTTGCCTAGAACAA+GGG + chr1_3:2767594-2767613 Msa0096990:CDS 45.0%
! TGTGATGGTGAAGATGGCAT+GGG - chr1_3:2767889-2767908 None:intergenic 45.0%
! ATGTGATGGTGAAGATGGCA+TGG - chr1_3:2767890-2767909 None:intergenic 45.0%
CCATCACATTAGAGCAGATG+CGG + chr1_3:2767901-2767920 Msa0096990:CDS 45.0%
TCTTTGTGCCAAGTTGCACT+TGG + chr1_3:2767977-2767996 Msa0096990:CDS 45.0%
TTGCACTTGGTAGATCTTGC+TGG + chr1_3:2767990-2768009 Msa0096990:CDS 45.0%
TCAGAACGAGCTAAACGAAC+GGG + chr1_3:2768014-2768033 Msa0096990:CDS 45.0%
GGCAATGTGATTAGTGCACT+CGG + chr1_3:2768181-2768200 Msa0096990:CDS 45.0%
GATGGATATGTGCTGCAAGA+AGG - chr1_3:2768308-2768327 None:intergenic 45.0%
ATCACTTGAGGGCCAATGAT+AGG - chr1_3:2768727-2768746 None:intergenic 45.0%
!! CAAAGTGTTGAGGGTTTCCT+CGG - chr1_3:2768843-2768862 None:intergenic 45.0%
TGGATCTCTATTGACCTGTG+GGG - chr1_3:2769015-2769034 None:intergenic 45.0%
TGGCTCTTCTGATGAAGTTC+AGG + chr1_3:2769106-2769125 Msa0096990:CDS 45.0%
ACTGGTTATGTAGGTCCTCA+AGG + chr1_3:2769384-2769403 Msa0096990:intron 45.0%
! TTGGCTTGAAGCAGCTAATG+AGG + chr1_3:2769417-2769436 Msa0096990:CDS 45.0%
! GTTCAGGATATGGACTGCAA+AGG + chr1_3:2769664-2769683 Msa0096990:intron 45.0%
GCTACCGTCCTGAAAAATGA+AGG - chr1_3:2769710-2769729 None:intergenic 45.0%
TGCTTCGCTCATTGGATAGT+CGG - chr1_3:2769785-2769804 None:intergenic 45.0%
CTATCCAATGAGCGAAGCAA+TGG + chr1_3:2769786-2769805 Msa0096990:CDS 45.0%
TTACCCATTGCTTCGCTCAT+TGG - chr1_3:2769793-2769812 None:intergenic 45.0%
TAAACGCTTGGAGCAGAAAG+AGG + chr1_3:2770051-2770070 Msa0096990:CDS 45.0%
CCCCTTAAATCAATGCACCA+TGG + chr1_3:2770129-2770148 Msa0096990:intron 45.0%
!! AAGTGCTGCTTGAGTGTTTC+AGG - chr1_3:2770409-2770428 None:intergenic 45.0%
GAAACACTCAAGCAGCACTT+TGG + chr1_3:2770409-2770428 Msa0096990:CDS 45.0%
! GCACTTTGGAAGGAAGATCA+TGG + chr1_3:2770423-2770442 Msa0096990:CDS 45.0%
! GCAAGATAGGGATCGTCTTT+TGG + chr1_3:2770581-2770600 Msa0096990:intron 45.0%
CGGACAAACACACAAATCAG+AGG + chr1_3:2770635-2770654 Msa0096990:CDS 45.0%
GCCAGGTTCAATTGCAACAA+AGG + chr1_3:2770985-2771004 Msa0096990:intron 45.0%
AGAACAATTTCGGCAGTGGA+AGG + chr1_3:2771022-2771041 Msa0096990:CDS 45.0%
GGCAAAAATTAGAAGCTGGC+CGG + chr1_3:2771301-2771320 Msa0096990:intron 45.0%
AGAAAGCTAAATCGTGCCTC+TGG + chr1_3:2771829-2771848 Msa0096990:intron 45.0%
GAAAGCTAAATCGTGCCTCT+GGG + chr1_3:2771830-2771849 Msa0096990:intron 45.0%
GGTCCTTCAGAGAAAAACTG+AGG + chr1_3:2772098-2772117 Msa0096990:intron 45.0%
GCAATGAGAAGTCCTTGCAA+CGG + chr1_3:2772540-2772559 Msa0096990:CDS 45.0%
TGATCACGAGCTAGAAGTCA+TGG + chr1_3:2772568-2772587 Msa0096990:CDS 45.0%
GAGTATGTGCTGCATACACT+TGG - chr1_3:2772634-2772653 None:intergenic 45.0%
AACACTGTGCCACAATCTTC+AGG + chr1_3:2772696-2772715 Msa0096990:intron 45.0%
!! TTTTGGAGGACTAAGACCAC+TGG - chr1_3:2772777-2772796 None:intergenic 45.0%
! AGTGGTCTTAGTCCTCCAAA+AGG + chr1_3:2772776-2772795 Msa0096990:CDS 45.0%
! GTGGTCTTAGTCCTCCAAAA+GGG + chr1_3:2772777-2772796 Msa0096990:CDS 45.0%
AGTCCTCCAAAAGGGAAGAA+CGG + chr1_3:2772785-2772804 Msa0096990:CDS 45.0%
! AATCCGTTCTTCCCTTTTGG+AGG - chr1_3:2772791-2772810 None:intergenic 45.0%
! GCAAATCCGTTCTTCCCTTT+TGG - chr1_3:2772794-2772813 None:intergenic 45.0%
! AAGGGAAGAACGGATTTGCT+AGG + chr1_3:2772795-2772814 Msa0096990:CDS 45.0%
AATGGCCAGAATAGCTTCAC+TGG + chr1_3:2772983-2773002 Msa0096990:CDS 45.0%
GTTCTCCAGTGAAGCTATTC+TGG - chr1_3:2772991-2773010 None:intergenic 45.0%
TCAACTCTCTTGCAGACACT+AGG + chr1_3:2773156-2773175 Msa0096990:CDS 45.0%
GGGAACTTGTAGGTCTACTA+CGG + chr1_3:2773553-2773572 Msa0096990:CDS 45.0%
CAAGAGGAAGGAAGTTGAGA+AGG + chr1_3:2773587-2773606 Msa0096990:CDS 45.0%
GCTAGATGATGCAACCACAT+TGG + chr1_3:2773626-2773645 Msa0096990:CDS 45.0%
AGACAGGATCTTACCGAAAC+TGG - chr1_3:2773657-2773676 None:intergenic 45.0%
TGTTGGTGCAAGACTGTATG+GGG - chr1_3:2773817-2773836 None:intergenic 45.0%
CTGTTGGTGCAAGACTGTAT+GGG - chr1_3:2773818-2773837 None:intergenic 45.0%
TCTGTTGGTGCAAGACTGTA+TGG - chr1_3:2773819-2773838 None:intergenic 45.0%
TAGTGACTATCTCCTTCGGT+CGG + chr1_3:2774164-2774183 Msa0096990:intron 45.0%
AGTCTTCCCTTGACTTCAAC+AGG + chr1_3:2774325-2774344 Msa0096990:intron 45.0%
GTCTTCCCTTGACTTCAACA+GGG + chr1_3:2774326-2774345 Msa0096990:intron 45.0%
GAGTTTCCCTGTTGAAGTCA+AGG - chr1_3:2774335-2774354 None:intergenic 45.0%
ACACTCTGTAGACGACATCA+AGG + chr1_3:2774370-2774389 Msa0096990:CDS 45.0%
! TATTTGCGCTGTTTCGATGC+TGG - chr1_3:2774419-2774438 None:intergenic 45.0%
TATACACCCGGCATTGCTAA+TGG + chr1_3:2774437-2774456 Msa0096990:CDS 45.0%
CATTGCTAATGGCCAAGTGA+GGG + chr1_3:2774448-2774467 Msa0096990:CDS 45.0%
TTGATGCAGATGGTACCCAT+TGG + chr1_3:2774570-2774589 Msa0096990:intron 45.0%
TGATGCAGATGGTACCCATT+GGG + chr1_3:2774571-2774590 Msa0096990:intron 45.0%
TGAGGCAAAGTATGTGAACG+TGG - chr1_3:2774765-2774784 None:intergenic 45.0%
TTGAAAGCTTGTATGGCGCA+AGG - chr1_3:2774953-2774972 None:intergenic 45.0%
GAAGATAGTTGCTTGCTTGG+AGG + chr1_3:2775291-2775310 Msa0096990:three_prime_UTR 45.0%
CTGTCCATACCAACACTAGA+AGG + chr1_3:2775357-2775376 Msa0096990:three_prime_UTR 45.0%
!!! AATTTTTATCTATAAATTTT+AGG + chr1_3:2773868-2773887 Msa0096990:intron 5.0%
!!! ATTTTTATCTATAAATTTTA+GGG + chr1_3:2773869-2773888 Msa0096990:intron 5.0%
GGAGGAGAGAGAAAGAGAGA+GGG - chr1_3:2765533-2765552 None:intergenic 50.0%
AGGAGGAGAGAGAAAGAGAG+AGG - chr1_3:2765534-2765553 None:intergenic 50.0%
CAATGTGAGTGCGAGGTTCT+TGG - chr1_3:2765714-2765733 None:intergenic 50.0%
ACACAGACAATGTGAGTGCG+AGG - chr1_3:2765721-2765740 None:intergenic 50.0%
! TGCTTCTTCGTGATGGAAGC+AGG + chr1_3:2765753-2765772 Msa0096990:exon 50.0%
!! TGTTGTTTCTGGGAAGCCTC+AGG + chr1_3:2765860-2765879 Msa0096990:CDS 50.0%
!! ATGGGCACTGGCTCTAAAGA+TGG + chr1_3:2767146-2767165 Msa0096990:CDS 50.0%
GCTGCATGTGTCCTTTATCG+AGG + chr1_3:2767250-2767269 Msa0096990:CDS 50.0%
GCCTCGCGAATTTGTATAGG+TGG - chr1_3:2767512-2767531 None:intergenic 50.0%
GGGTCATTGAGTAGAGCAAC+TGG + chr1_3:2767614-2767633 Msa0096990:CDS 50.0%
! GGGAACGACTAGTTGGACAA+AGG - chr1_3:2767869-2767888 None:intergenic 50.0%
ATGGCATGGGAACGACTAGT+TGG - chr1_3:2767876-2767895 None:intergenic 50.0%
CCGCATCTGCTCTAATGTGA+TGG - chr1_3:2767904-2767923 None:intergenic 50.0%
! GCTAAACGAACGGGTTCTGA+TGG + chr1_3:2768023-2768042 Msa0096990:CDS 50.0%
ACTTGAGGGCCAATGATAGG+AGG - chr1_3:2768724-2768743 None:intergenic 50.0%
CAGCAGGACTTATACAGGCT+GGG - chr1_3:2768811-2768830 None:intergenic 50.0%
TCAGCAGGACTTATACAGGC+TGG - chr1_3:2768812-2768831 None:intergenic 50.0%
TCCTGCTGACATTAATGCCG+AGG + chr1_3:2768823-2768842 Msa0096990:CDS 50.0%
TCCTCGGCATTAATGTCAGC+AGG - chr1_3:2768827-2768846 None:intergenic 50.0%
GCAGAACTTTGTGCTCGTTC+TGG + chr1_3:2769083-2769102 Msa0096990:CDS 50.0%
GAACTTTGTGCTCGTTCTGG+TGG + chr1_3:2769086-2769105 Msa0096990:CDS 50.0%
TTCGCTCATTGGATAGTCGG+GGG - chr1_3:2769782-2769801 None:intergenic 50.0%
CTTCGCTCATTGGATAGTCG+GGG - chr1_3:2769783-2769802 None:intergenic 50.0%
GCTTCGCTCATTGGATAGTC+GGG - chr1_3:2769784-2769803 None:intergenic 50.0%
CACTCAAGCAGCACTTTGGA+AGG + chr1_3:2770413-2770432 Msa0096990:CDS 50.0%
GGATGAGAAGAGAACTGTCC+AGG + chr1_3:2770453-2770472 Msa0096990:CDS 50.0%
!! AATCTTGCTGCCGGTTCTGA+CGG + chr1_3:2770615-2770634 Msa0096990:CDS 50.0%
GTGTGTTTGTCCGTCAGAAC+CGG - chr1_3:2770628-2770647 None:intergenic 50.0%
AGGCAGAACAATTTCGGCAG+TGG + chr1_3:2771018-2771037 Msa0096990:CDS 50.0%
CAGCAGCTCTTTCTCTCTAG+AGG - chr1_3:2771048-2771067 None:intergenic 50.0%
TCTTCTAGCCGAGATGCATC+AGG + chr1_3:2772171-2772190 Msa0096990:CDS 50.0%
TGGGAGTGGAGCAACTAAAC+AGG + chr1_3:2772434-2772453 Msa0096990:CDS 50.0%
ATGAGAAGTCCTTGCAACGG+TGG + chr1_3:2772543-2772562 Msa0096990:CDS 50.0%
TGAGAAGTCCTTGCAACGGT+GGG + chr1_3:2772544-2772563 Msa0096990:CDS 50.0%
ACTGTGCCACAATCTTCAGG+CGG + chr1_3:2772699-2772718 Msa0096990:intron 50.0%
CTGAGGCAGAAGAACGAGAA+CGG + chr1_3:2773060-2773079 Msa0096990:CDS 50.0%
TGAGGCAGAAGAACGAGAAC+GGG + chr1_3:2773061-2773080 Msa0096990:CDS 50.0%
TGGAACCAGTTGCGCTCAAT+GGG + chr1_3:2773104-2773123 Msa0096990:CDS 50.0%
CAGGTGTCAAATGTGGGAGA+AGG + chr1_3:2773497-2773516 Msa0096990:intron 50.0%
TACGGCAAAGCGAGATCAAG+AGG + chr1_3:2773571-2773590 Msa0096990:CDS 50.0%
GCAAAGCGAGATCAAGAGGA+AGG + chr1_3:2773575-2773594 Msa0096990:CDS 50.0%
CACATTGGCCAAGCCAGTTT+CGG + chr1_3:2773641-2773660 Msa0096990:CDS 50.0%
GGATCTTACCGAAACTGGCT+TGG - chr1_3:2773652-2773671 None:intergenic 50.0%
ACTTGGCCATTAGCAATGCC+GGG - chr1_3:2774446-2774465 None:intergenic 50.0%
CACTTGGCCATTAGCAATGC+CGG - chr1_3:2774447-2774466 None:intergenic 50.0%
GCATTGCTAATGGCCAAGTG+AGG + chr1_3:2774447-2774466 Msa0096990:CDS 50.0%
!! ATGCTGCTGATTCCCTCACT+TGG - chr1_3:2774463-2774482 None:intergenic 50.0%
GACAAGCTTCTGGCAAGCTA+TGG + chr1_3:2774625-2774644 Msa0096990:CDS 50.0%
AAGCTTCTGGCAAGCTATGG+AGG + chr1_3:2774628-2774647 Msa0096990:CDS 50.0%
GCAAGCTATGGAGGTGGAAA+AGG + chr1_3:2774637-2774656 Msa0096990:CDS 50.0%
GGAAAAGGAGCCATCATCAG+TGG + chr1_3:2774652-2774671 Msa0096990:CDS 50.0%
AATGGAAGTGGCAGAAGCCA+TGG + chr1_3:2774688-2774707 Msa0096990:CDS 50.0%
!! ACTTCCTTGTTTCTGGCTGC+AGG + chr1_3:2775110-2775129 Msa0096990:intron 50.0%
!! CTTCCTTGTTTCTGGCTGCA+GGG + chr1_3:2775111-2775130 Msa0096990:intron 50.0%
TGGCTGCAGGGTGATGTAAA+TGG + chr1_3:2775123-2775142 Msa0096990:intron 50.0%
! AGTTGCTTGCTTGGAGGCAT+TGG + chr1_3:2775297-2775316 Msa0096990:three_prime_UTR 50.0%
TACACACAAGCACACAGGCT+AGG - chr1_3:2775572-2775591 None:intergenic 50.0%
GTGATCAACCCACCGTTGCA+AGG - chr1_3:2772555-2772574 None:intergenic 55.0%
CTGTGCCACAATCTTCAGGC+GGG + chr1_3:2772700-2772719 Msa0096990:intron 55.0%
CCAGTGTCCACGGTTAGTGA+AGG - chr1_3:2773087-2773106 None:intergenic 55.0%
CCTTCACTAACCGTGGACAC+TGG + chr1_3:2773084-2773103 Msa0096990:CDS 55.0%
! GCAACTGGTTCCAGTGTCCA+CGG - chr1_3:2773097-2773116 None:intergenic 55.0%
CTGGAACCAGTTGCGCTCAA+TGG + chr1_3:2773103-2773122 Msa0096990:CDS 55.0%
CTTCTCCCATTGAGCGCAAC+TGG - chr1_3:2773112-2773131 None:intergenic 55.0%
!! CGAAACTGGCTTGGCCAATG+TGG - chr1_3:2773643-2773662 None:intergenic 55.0%
GGCACAGGATCCGGAGATAA+AGG - chr1_3:2774398-2774417 None:intergenic 55.0%
TTCGATGCTGGCACAGGATC+CGG - chr1_3:2774407-2774426 None:intergenic 55.0%
GCAGTTGCAGGACAAGCTTC+TGG + chr1_3:2774615-2774634 Msa0096990:CDS 55.0%
CTTCTGGCAAGCTATGGAGG+TGG + chr1_3:2774631-2774650 Msa0096990:CDS 55.0%
GCGTGATCAGCCATTTGTCG+TGG + chr1_3:2774807-2774826 Msa0096990:three_prime_UTR 55.0%
TCACCCTGCAGCCAGAAACA+AGG - chr1_3:2775117-2775136 None:intergenic 55.0%
AAGCACACAGGCTAGGAGAG+TGG - chr1_3:2775565-2775584 None:intergenic 55.0%
GGATAGTCGGGGGCTGTGAA+AGG - chr1_3:2769772-2769791 None:intergenic 60.0%
AGCAGCCCGCCTGAAGATTG+TGG - chr1_3:2772708-2772727 None:intergenic 60.0%
!! AATCTTCAGGCGGGCTGCTC+TGG + chr1_3:2772709-2772728 Msa0096990:intron 60.0%
!! ATCTTCAGGCGGGCTGCTCT+GGG + chr1_3:2772710-2772729 Msa0096990:intron 60.0%
GAACGGGCCTTCACTAACCG+TGG + chr1_3:2773077-2773096 Msa0096990:CDS 60.0%
! CGCTGTTTCGATGCTGGCAC+AGG - chr1_3:2774413-2774432 None:intergenic 60.0%
!! CAGGCGGGCTGCTCTGGGAG+AGG + chr1_3:2772715-2772734 Msa0096990:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2765522 2775731 2765522 ID=Msa0096990;Name=Msa0096990
chr1_3 mRNA 2765522 2775731 2765522 ID=Msa0096990-mRNA-1;Parent=Msa0096990;Name=Msa0096990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=243|1|1|1|0.96|0.96|26|709|1028
chr1_3 exon 2765522 2765881 2765522 ID=Msa0096990-mRNA-1:exon:733;Parent=Msa0096990-mRNA-1
chr1_3 exon 2766673 2766819 2766673 ID=Msa0096990-mRNA-1:exon:734;Parent=Msa0096990-mRNA-1
chr1_3 exon 2767122 2767271 2767122 ID=Msa0096990-mRNA-1:exon:735;Parent=Msa0096990-mRNA-1
chr1_3 exon 2767410 2767663 2767410 ID=Msa0096990-mRNA-1:exon:736;Parent=Msa0096990-mRNA-1
chr1_3 exon 2767881 2768062 2767881 ID=Msa0096990-mRNA-1:exon:737;Parent=Msa0096990-mRNA-1
chr1_3 exon 2768149 2768273 2768149 ID=Msa0096990-mRNA-1:exon:738;Parent=Msa0096990-mRNA-1
chr1_3 exon 2768648 2768684 2768648 ID=Msa0096990-mRNA-1:exon:739;Parent=Msa0096990-mRNA-1
chr1_3 exon 2768813 2768904 2768813 ID=Msa0096990-mRNA-1:exon:740;Parent=Msa0096990-mRNA-1
chr1_3 exon 2769020 2769127 2769020 ID=Msa0096990-mRNA-1:exon:741;Parent=Msa0096990-mRNA-1
chr1_3 exon 2769397 2769510 2769397 ID=Msa0096990-mRNA-1:exon:742;Parent=Msa0096990-mRNA-1
chr1_3 exon 2769721 2769808 2769721 ID=Msa0096990-mRNA-1:exon:743;Parent=Msa0096990-mRNA-1
chr1_3 exon 2769963 2770072 2769963 ID=Msa0096990-mRNA-1:exon:744;Parent=Msa0096990-mRNA-1
chr1_3 exon 2770376 2770474 2770376 ID=Msa0096990-mRNA-1:exon:745;Parent=Msa0096990-mRNA-1
chr1_3 exon 2770582 2770695 2770582 ID=Msa0096990-mRNA-1:exon:746;Parent=Msa0096990-mRNA-1
chr1_3 exon 2770797 2770913 2770797 ID=Msa0096990-mRNA-1:exon:747;Parent=Msa0096990-mRNA-1
chr1_3 exon 2770990 2771070 2770990 ID=Msa0096990-mRNA-1:exon:748;Parent=Msa0096990-mRNA-1
chr1_3 exon 2771429 2771500 2771429 ID=Msa0096990-mRNA-1:exon:749;Parent=Msa0096990-mRNA-1
chr1_3 exon 2772099 2772192 2772099 ID=Msa0096990-mRNA-1:exon:750;Parent=Msa0096990-mRNA-1
chr1_3 exon 2772424 2772455 2772424 ID=Msa0096990-mRNA-1:exon:751;Parent=Msa0096990-mRNA-1
chr1_3 exon 2772539 2772636 2772539 ID=Msa0096990-mRNA-1:exon:752;Parent=Msa0096990-mRNA-1
chr1_3 exon 2772718 2772816 2772718 ID=Msa0096990-mRNA-1:exon:753;Parent=Msa0096990-mRNA-1
chr1_3 exon 2772956 2773177 2772956 ID=Msa0096990-mRNA-1:exon:754;Parent=Msa0096990-mRNA-1
chr1_3 exon 2773500 2773662 2773500 ID=Msa0096990-mRNA-1:exon:755;Parent=Msa0096990-mRNA-1
chr1_3 exon 2774347 2774502 2774347 ID=Msa0096990-mRNA-1:exon:756;Parent=Msa0096990-mRNA-1
chr1_3 exon 2774579 2774903 2774579 ID=Msa0096990-mRNA-1:exon:757;Parent=Msa0096990-mRNA-1
chr1_3 exon 2775132 2775731 2775132 ID=Msa0096990-mRNA-1:exon:758;Parent=Msa0096990-mRNA-1
chr1_3 five_prime_UTR 2765522 2765764 2765522 ID=Msa0096990-mRNA-1:five_prime_utr;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2765765 2765881 2765765 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2766673 2766819 2766673 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2767122 2767271 2767122 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2767410 2767663 2767410 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2767881 2768062 2767881 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2768149 2768273 2768149 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2768648 2768684 2768648 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2768813 2768904 2768813 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2769020 2769127 2769020 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2769397 2769510 2769397 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2769721 2769808 2769721 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2769963 2770072 2769963 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2770376 2770474 2770376 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2770582 2770695 2770582 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2770797 2770913 2770797 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2770990 2771070 2770990 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2771429 2771500 2771429 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2772099 2772192 2772099 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2772424 2772455 2772424 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2772539 2772636 2772539 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2772718 2772816 2772718 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2772956 2773177 2772956 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2773500 2773662 2773500 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2774347 2774502 2774347 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 CDS 2774579 2774794 2774579 ID=Msa0096990-mRNA-1:cds;Parent=Msa0096990-mRNA-1
chr1_3 three_prime_UTR 2774795 2774903 2774795 ID=Msa0096990-mRNA-1:three_prime_utr;Parent=Msa0096990-mRNA-1
chr1_3 three_prime_UTR 2775132 2775731 2775132 ID=Msa0096990-mRNA-1:three_prime_utr;Parent=Msa0096990-mRNA-1
Gene Sequence

>Msa0096990

ATGGAAGCAGGTGAAGATTGTTGTGTGAAAGTTGCGGTTCATGTGAGACCATTAATCAATGATGAGAAGCTTCAAGGTTGTAAAGATTGTGTAACTGTTGTTTCTGGGAAGCCTCAGGTGCAAATTGGTGCTCATTCCTTTACATTTGATCATGTTTATGGGAGCACTGGTTCACCCTCATCTGCCATGTTTGATGAATGTGTTTCTTCCCTTGTTGGTGGTTTGTTCCAAGGGTATAATGCTACTGTTCTTGCATATGGTCAGACAGGTTCTGGGAAAACATACACAATGGGCACTGGCTCTAAAGATGGTTATCAAGCAGGAATAGTACCCCAAGTTATGAGTTCCTTGTTTAGTAAAATTGAGACCTTAAAGAATCAGATTGAATTTCAGCTGCATGTGTCCTTTATCGAGATTCTTAAAGAAGAAGTAAGAGATTTGCTGGACCCGTCCTTTATTAGCAAACCAGATACTACAAATGGACATACAGGGAAAGTGACTATTCCTGGTAAACCACCTATACAAATTCGCGAGGCTTCAAATGGCGTCATTACTCTAGCAGGATCTACTGAAGTCAGTGTTGCAACATTAAAAGAAATGTCTGCTTGCCTAGAACAAGGGTCATTGAGTAGAGCAACTGGAAGCACTAATATGAACAACCAATCCAGTCGTTCCCATGCCATCTTCACCATCACATTAGAGCAGATGCGGAAGCTCAACAATCCTAGTGAGACCAGTTTAAATGATACCATGAATGAAGATTATCTTTGTGCCAAGTTGCACTTGGTAGATCTTGCTGGATCAGAACGAGCTAAACGAACGGGTTCTGATGGTTTACGTTTTAAGGAAGGAGTTCACATTAACAAAGGTCTACTAGCACTTGGCAATGTGATTAGTGCACTCGGTGATGAGAAAAAGAGAAAAGAAGGCGTTCATGTTCCTTATAGAGATAGTAAACTTACCAGGCTTTTGCAGGATTCACTTGGTGGTAACAGCAGAACTGTTATGATAGCCTGTATAAGTCCTGCTGACATTAATGCCGAGGAAACCCTCAACACTTTGAAGTATGCAAATCGTGCACGCAATATCCGAAATAAGCCTGTTGTCAATAGAGATCCAATGTCCAATGAGATGCTTAAAATGCGACAACAACTAGAGACTTTGCAAGCAGAACTTTGTGCTCGTTCTGGTGGCTCTTCTGATGAAGTTCAGGTCCTCAAGGAAAGAATTTCTTGGCTTGAAGCAGCTAATGAGGATCTTTGCCGTGAACTTCATGAATATCGTAGTAGATGCTCTGGTGCAGTACAAAGTGAAAAGGATGCTTATGACGGTAGCGTGTACAATATAAAGACTGATGGGTTAAAAAGGAGCTTACCTTTCACAGCCCCCGACTATCCAATGAGCGAAGCAATGGGGGATTCAAGGGAAATTGAAGAAGTAGCAAAAGAGTGGGAGCATACACTTCTGCAAAACAGTATGGATAGAGAGTTACATGAATTGAATAAACGCTTGGAGCAGAAAGAGTCTGAGATGAAGCTTTTTGGATCATCGGATCCTGAAACACTCAAGCAGCACTTTGGAAGGAAGATCATGGAACTTGAGGATGAGAAGAGAACTGTCCAGCAAGATAGGGATCGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCGGTTCTGACGGACAAACACACAAATCAGAGGATATCCATGCCCAAAAATTAAAAGCACTTGAAGCCCAGATTCTGGATATGAAGAAGAAACAAGATAGCCAGGTTCAGCTTCTAAAGCAAAAGCAAAAAAGTGATGAAGCAGCAAAGCGCCTTCAAGATGAAATACAATCTATAAAAGCCCAAAAGGTTCAATTGCAACAAAGGATAAAACAAGAGGCAGAACAATTTCGGCAGTGGAAGGCCTCTAGAGAGAAAGAGCTGCTGCAATTAAAGAAAGAAGGAAGAAGAAACGAATTTGAAAGGCATAAGCTGCAAGCACTAAATCAGCGTCAGAAAATGGTCCTTCAGAGAAAAACTGAGGAAGCTGCAATGGCCACCAAGAAGTTAAAGGAACTGTTAGAAGCTCGTAAATCTTCTAGCCGAGATGCATCAGTTACAATAAATGGGAGTGGAGCAACTAAACAGAGCAATGAGAAGTCCTTGCAACGGTGGGTTGATCACGAGCTAGAAGTCATGGTAAAAGAGCATGAAGTTCGTTTTGAGTATGAGAAGCAGAGCCAAGTGCGGGCTGCTCTGGGAGAGGAGTTAGCCATGCTGAAACAAGTAAATGAATTTGCTGCCAGTGGTCTTAGTCCTCCAAAAGGGAAGAACGGATTTGCTAGAGCATTCTCCATGTCGCTAAATGCAAGAATGGCCAGAATAGCTTCACTGGAGAACATGCTGAGCATATCATCTAATTCACTTGTGGCAATGGCTTCTCAACTATCTGAGGCAGAAGAACGAGAACGGGCCTTCACTAACCGTGGACACTGGAACCAGTTGCGCTCAATGGGAGAAGCCAAAATTTTGCTTCAATATATGTTCAACTCTCTTGCAGACACTAGGTGTCAAATGTGGGAGAAGGATATGGAGATAAGAGAAATGAAAGATCAAATCAGGGAACTTGTAGGTCTACTACGGCAAAGCGAGATCAAGAGGAAGGAAGTTGAGAAGGAACTAAAAGTGAGAGAGCTAGATGATGCAACCACATTGGCCAAGCCAGTTTCGGGAAACTCTCCAAATTCATTGAAACACTCTGTAGACGACATCAAGGAACCTTTATCTCCGGATCCTGTGCCAGCATCGAAACAGCGCAAATATACACCCGGCATTGCTAATGGCCAAGTGAGGGAATCAGCAGCATTTATAGATCAAAGTAGAAAGATGGTACCCATTGGGCAATTGTCAATGAAAAAACTAGCAGTTGCAGGACAAGCTTCTGGCAAGCTATGGAGGTGGAAAAGGAGCCATCATCAGTGGCTAATTCAATTCAAATGGAAGTGGCAGAAGCCATGGAAACTTTCTGAACGGATTCGACACAGTGATGAGACTATGATGAGAGCAAGGCCACGTTCACATACTTTGCCTCAAATCAAGTGA
Protein sequence

>Msa0096990

MEAGEDCCVKVAVHVRPLINDEKLQGCKDCVTVVSGKPQVQIGAHSFTFDHVYGSTGSPSSAMFDECVSSLVGGLFQGYNATVLAYGQTGSGKTYTMGTGSKDGYQAGIVPQVMSSLFSKIETLKNQIEFQLHVSFIEILKEEVRDLLDPSFISKPDTTNGHTGKVTIPGKPPIQIREASNGVITLAGSTEVSVATLKEMSACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNNPSETSLNDTMNEDYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIRNKPVVNRDPMSNEMLKMRQQLETLQAELCARSGGSSDEVQVLKERISWLEAANEDLCRELHEYRSRCSGAVQSEKDAYDGSVYNIKTDGLKRSLPFTAPDYPMSEAMGDSREIEEVAKEWEHTLLQNSMDRELHELNKRLEQKESEMKLFGSSDPETLKQHFGRKIMELEDEKRTVQQDRDRLLAEVENLAAGSDGQTHKSEDIHAQKLKALEAQILDMKKKQDSQVQLLKQKQKSDEAAKRLQDEIQSIKAQKVQLQQRIKQEAEQFRQWKASREKELLQLKKEGRRNEFERHKLQALNQRQKMVLQRKTEEAAMATKKLKELLEARKSSSRDASVTINGSGATKQSNEKSLQRWVDHELEVMVKEHEVRFEYEKQSQVRAALGEELAMLKQVNEFAASGLSPPKGKNGFARAFSMSLNARMARIASLENMLSISSNSLVAMASQLSEAEERERAFTNRGHWNQLRSMGEAKILLQYMFNSLADTRCQMWEKDMEIREMKDQIRELVGLLRQSEIKRKEVEKELKVRELDDATTLAKPVSGNSPNSLKHSVDDIKEPLSPDPVPASKQRKYTPGIANGQVRESAAFIDQSRKMVPIGQLSMKKLAVAGQASGKLWRWKRSHHQWLIQFKWKWQKPWKLSERIRHSDETMMRARPRSHTLPQIK*