AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373490 MtrunA17_Chr3g0122901 97.188 320 9 0 1 320 1 320 0.0 628
Msa0373490 MtrunA17_Chr7g0259521 35.714 252 155 5 75 320 6 256 1.86e-38 137
Msa0373490 MtrunA17_Chr4g0026001 33.074 257 158 7 71 320 10 259 8.71e-36 130
Msa0373490 MtrunA17_Chr7g0259531 35.223 247 151 6 79 318 15 259 1.01e-35 130
Msa0373490 MtrunA17_Chr4g0025971 32.549 255 162 6 69 318 8 257 1.04e-34 127
Msa0373490 MtrunA17_Chr4g0028921 31.923 260 167 6 70 320 6 264 2.89e-32 121
Msa0373490 MtrunA17_Chr4g0028911 32.197 264 161 9 70 320 6 264 4.48e-31 117
Msa0373490 MtrunA17_Chr4g0032141 30.072 276 188 4 46 318 27 300 4.75e-31 119
Msa0373490 MtrunA17_Chr1g0171831 35.769 260 142 12 70 310 9 262 2.08e-30 115
Msa0373490 MtrunA17_Chr3g0112261 31.707 246 157 5 81 320 25 265 1.10e-29 114
Msa0373490 MtrunA17_Chr7g0272961 30.451 266 153 7 74 320 39 291 1.34e-29 114
Msa0373490 MtrunA17_Chr6g0459261 30.739 257 159 8 74 318 24 273 1.72e-29 114
Msa0373490 MtrunA17_Chr7g0244061 27.957 279 156 6 73 318 27 293 1.78e-29 114
Msa0373490 MtrunA17_Chr4g0025981 30.522 249 155 6 79 318 45 284 2.38e-29 114
Msa0373490 MtrunA17_Chr1g0182511 35.686 255 152 7 74 319 13 264 4.62e-29 112
Msa0373490 MtrunA17_Chr3g0112151 30.488 246 160 6 81 320 92 332 1.96e-28 112
Msa0373490 MtrunA17_Chr3g0112171 30.488 246 160 6 81 320 21 261 3.46e-28 110
Msa0373490 MtrunA17_Chr7g0268591 28.517 263 171 6 68 318 26 283 1.33e-27 109
Msa0373490 MtrunA17_Chr1g0191751 29.572 257 167 6 74 320 100 352 1.64e-27 110
Msa0373490 MtrunA17_Chr6g0459351 30.916 262 158 9 69 316 7 259 3.12e-27 107
Msa0373490 MtrunA17_Chr7g0266981 30.916 262 158 9 70 318 8 259 3.42e-27 107
Msa0373490 MtrunA17_Chr4g0074511 30.739 257 165 8 74 320 39 292 4.15e-27 107
Msa0373490 MtrunA17_Chr7g0239481 30.000 250 160 5 81 320 21 265 1.02e-26 106
Msa0373490 MtrunA17_Chr4g0044111 30.916 262 158 9 70 318 8 259 1.13e-26 106
Msa0373490 MtrunA17_Chr7g0267011 31.795 195 124 4 73 263 6 195 1.54e-26 103
Msa0373490 MtrunA17_Chr7g0252031 30.682 264 165 6 68 318 28 286 1.77e-26 106
Msa0373490 MtrunA17_Chr7g0239491 30.400 250 154 7 81 318 21 262 2.94e-26 104
Msa0373490 MtrunA17_Chr7g0239511 30.435 253 155 6 81 320 22 266 5.40e-26 104
Msa0373490 MtrunA17_Chr3g0112141 29.508 244 161 6 81 318 23 261 5.64e-26 104
Msa0373490 MtrunA17_Chr4g0032181 32.870 216 139 5 109 320 34 247 5.87e-26 103
Msa0373490 MtrunA17_Chr6g0459271 31.274 259 155 8 74 318 12 261 9.89e-26 103
Msa0373490 MtrunA17_Chr6g0459301 30.233 258 159 8 74 318 13 262 1.13e-25 103
Msa0373490 MtrunA17_Chr0c30g0494101 29.572 257 166 8 74 320 39 290 1.39e-25 103
Msa0373490 MtrunA17_Chr7g0239501 29.880 251 159 6 81 320 22 266 2.22e-25 102
Msa0373490 MtrunA17_Chr3g0112271 29.675 246 162 5 81 320 23 263 2.63e-25 102
Msa0373490 MtrunA17_Chr3g0133421 84.314 51 8 0 1 51 1 51 1.29e-24 96.3
Msa0373490 MtrunA17_Chr4g0044131 28.346 254 167 7 73 317 6 253 1.95e-24 100
Msa0373490 MtrunA17_Chr4g0075531 30.739 257 160 8 70 318 2 248 2.54e-24 99.4
Msa0373490 MtrunA17_Chr6g0459281 29.615 260 160 9 74 319 12 262 2.74e-24 99.8
Msa0373490 MtrunA17_Chr6g0459331 29.434 265 164 8 68 318 6 261 1.76e-23 97.4
Msa0373490 MtrunA17_Chr7g0266891 29.804 255 164 8 73 318 5 253 2.33e-23 97.1
Msa0373490 MtrunA17_Chr3g0084871 31.295 278 162 8 61 318 1 269 2.49e-22 94.4
Msa0373490 MtrunA17_Chr3g0124471 32.124 193 124 3 73 264 24 210 1.47e-21 92.8
Msa0373490 MtrunA17_Chr7g0239451 29.435 248 158 6 81 317 22 263 2.46e-21 91.7
Msa0373490 MtrunA17_Chr2g0324021 27.519 258 166 9 73 318 4 252 9.14e-21 90.1
Msa0373490 MtrunA17_Chr7g0270451 29.297 256 164 8 73 318 4 252 1.76e-20 89.0
Msa0373490 MtrunA17_Chr4g0040371 30.189 265 159 9 71 318 15 270 2.62e-20 89.0
Msa0373490 MtrunA17_Chr8g0357481 27.715 267 178 6 67 320 3 267 2.64e-20 89.4
Msa0373490 MtrunA17_Chr7g0270441 26.820 261 165 10 73 318 4 253 5.96e-19 85.1
Msa0373490 MtrunA17_Chr7g0239461 28.745 247 113 7 81 318 22 214 3.82e-18 81.6
Msa0373490 MtrunA17_Chr4g0076931 32.984 191 122 5 80 266 11 199 4.68e-18 82.0
Msa0373490 MtrunA17_Chr3g0124481 30.058 173 115 2 92 264 29 195 3.29e-17 80.5
Msa0373490 MtrunA17_Chr4g0054341 28.718 195 124 3 76 264 3 188 3.95e-17 80.1
Msa0373490 MtrunA17_Chr4g0045041 28.641 206 130 6 81 272 10 212 9.46e-17 80.9
Msa0373490 MtrunA17_Chr7g0266991 29.146 199 119 3 72 268 22 200 9.94e-17 78.2
Msa0373490 MtrunA17_Chr7g0267001 26.000 250 160 6 73 317 6 235 2.08e-16 77.4
Msa0373490 MtrunA17_Chr8g0386201 26.009 223 151 5 73 283 43 263 2.37e-16 78.6
Msa0373490 MtrunA17_Chr4g0045061 28.780 205 123 7 81 268 10 208 6.10e-16 78.6
Msa0373490 MtrunA17_Chr8g0381191 27.230 213 140 5 81 283 51 258 2.25e-15 75.5
Msa0373490 MtrunA17_Chr3g0123251 30.208 192 127 4 81 266 57 247 4.81e-15 74.7
Msa0373490 MtrunA17_Chr8g0355281 28.879 232 141 9 80 298 74 294 7.39e-15 74.3
Msa0373490 MtrunA17_Chr4g0033091 31.088 193 125 6 80 266 29 219 7.75e-14 70.5
Msa0373490 MtrunA17_Chr2g0287951 32.787 183 112 5 80 257 38 214 1.48e-13 70.5
Msa0373490 MtrunA17_Chr7g0249571 27.979 193 133 5 75 262 38 229 4.21e-13 68.9
Msa0373490 MtrunA17_Chr4g0044121 31.579 171 101 6 159 318 1 166 1.11e-12 65.5
Msa0373490 MtrunA17_Chr7g0270471 31.081 148 83 6 185 320 3 143 1.57e-12 64.3
Msa0373490 MtrunA17_Chr8g0386171 27.935 247 135 9 73 283 50 289 1.97e-12 67.4
Msa0373490 MtrunA17_Chr6g0463951 30.952 168 106 5 159 318 1 166 2.94e-12 64.3
Msa0373490 MtrunA17_Chr7g0247011 22.449 245 131 5 81 269 10 251 3.61e-12 65.9
Msa0373490 MtrunA17_Chr3g0142651 29.457 129 84 2 159 280 1 129 6.53e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373490 AT1G24360.1 69.637 303 92 0 18 320 17 319 1.84e-151 428
Msa0373490 AT5G18210.1 35.060 251 151 6 79 319 12 260 2.40e-36 132
Msa0373490 AT5G06060.1 34.940 249 145 7 81 320 15 255 2.51e-34 126
Msa0373490 AT1G62610.4 36.538 260 150 10 70 317 14 270 3.98e-34 126
Msa0373490 AT1G62610.2 36.293 259 152 9 70 317 8 264 4.90e-34 126
Msa0373490 AT1G62610.1 36.538 260 150 10 70 317 9 265 5.57e-34 126
Msa0373490 AT1G62610.3 36.538 260 150 10 70 317 10 266 6.13e-34 125
Msa0373490 AT3G03980.1 34.646 254 152 5 79 319 18 270 6.35e-34 125
Msa0373490 AT5G18210.2 35.498 231 138 5 79 299 12 241 1.20e-33 125
Msa0373490 AT1G07440.1 32.661 248 163 4 75 320 12 257 3.47e-33 123
Msa0373490 AT3G04000.1 34.375 256 153 6 79 320 18 272 3.52e-33 124
Msa0373490 AT1G63380.1 35.361 263 155 11 70 320 12 271 5.73e-33 123
Msa0373490 AT1G63380.4 35.361 263 155 11 70 320 14 273 6.32e-33 123
Msa0373490 AT1G63380.3 35.361 263 155 11 70 320 10 269 7.27e-33 123
Msa0373490 AT1G63380.2 35.361 263 155 11 70 320 17 276 8.76e-33 123
Msa0373490 AT2G29260.1 31.535 241 160 4 81 318 74 312 1.35e-32 123
Msa0373490 AT4G13180.1 34.940 249 153 7 79 320 17 263 9.85e-31 117
Msa0373490 AT2G29150.1 32.520 246 160 5 75 317 16 258 2.59e-30 116
Msa0373490 AT1G54870.1 27.362 307 210 7 23 320 31 333 3.04e-30 117
Msa0373490 AT1G54870.2 27.362 307 210 7 23 320 33 335 3.21e-30 117
Msa0373490 AT2G30670.1 32.510 243 159 4 81 320 13 253 4.18e-30 115
Msa0373490 AT3G05260.1 29.412 255 169 5 74 320 36 287 6.26e-30 115
Msa0373490 AT2G29370.1 33.333 252 157 7 75 320 16 262 6.88e-30 115
Msa0373490 AT3G46170.1 34.363 259 156 11 70 317 21 276 1.59e-29 114
Msa0373490 AT3G55290.2 33.206 262 155 11 70 317 12 267 1.86e-29 114
Msa0373490 AT3G55290.1 33.206 262 155 11 70 317 13 268 2.04e-29 114
Msa0373490 AT2G29340.2 32.099 243 160 4 81 320 13 253 2.66e-29 113
Msa0373490 AT3G55310.1 33.588 262 160 11 70 320 12 270 3.53e-29 113
Msa0373490 AT2G29340.1 32.099 243 160 4 81 320 13 253 4.81e-29 113
Msa0373490 AT2G29360.1 32.099 243 160 5 81 320 22 262 5.21e-29 112
Msa0373490 AT3G26770.1 29.344 259 165 5 73 318 39 292 7.58e-28 110
Msa0373490 AT2G29330.1 31.687 243 161 4 81 320 13 253 1.16e-27 108
Msa0373490 AT2G29350.1 32.083 240 157 6 81 317 21 257 1.47e-27 108
Msa0373490 AT2G17845.1 33.462 260 152 12 74 317 46 300 1.56e-27 109
Msa0373490 AT1G52340.1 33.208 265 152 7 73 318 16 274 1.78e-27 108
Msa0373490 AT2G29290.2 30.705 241 162 4 81 318 13 251 4.72e-27 107
Msa0373490 AT2G29310.1 31.276 243 162 4 81 320 13 253 5.40e-27 107
Msa0373490 AT2G29320.1 31.429 245 160 6 81 320 19 260 4.54e-26 104
Msa0373490 AT2G29300.1 31.837 245 159 6 81 320 13 254 1.25e-25 103
Msa0373490 AT2G29300.2 32.510 243 156 6 81 318 13 252 2.59e-25 103
Msa0373490 AT4G03140.1 27.799 259 168 6 73 318 76 328 2.61e-25 104
Msa0373490 AT2G47120.2 31.783 258 153 9 72 317 4 250 3.12e-24 99.8
Msa0373490 AT2G47120.1 32.031 256 151 9 74 317 5 249 4.61e-24 99.4
Msa0373490 AT2G29310.2 31.527 203 135 3 121 320 50 251 8.66e-24 98.6
Msa0373490 AT3G51680.1 32.836 201 123 4 73 264 30 227 1.20e-23 99.0
Msa0373490 AT3G26760.1 29.389 262 163 7 73 318 34 289 2.06e-23 98.2
Msa0373490 AT1G49670.2 35.349 215 116 7 81 280 10 216 3.35e-23 100
Msa0373490 AT1G49670.1 35.349 215 116 7 81 280 10 216 3.52e-23 100
Msa0373490 AT2G29290.1 30.047 213 145 3 109 318 23 234 6.28e-23 95.9
Msa0373490 AT2G29350.3 30.660 212 142 5 109 317 10 219 6.54e-23 95.5
Msa0373490 AT5G65205.1 33.684 190 119 3 76 264 7 190 7.75e-23 96.3
Msa0373490 AT1G07450.1 31.621 253 147 7 81 320 14 253 1.56e-22 95.1
Msa0373490 AT2G29320.2 31.414 191 124 5 135 320 54 242 2.23e-22 94.4
Msa0373490 AT3G42960.1 31.439 264 152 7 73 317 6 259 6.86e-22 93.6
Msa0373490 AT5G10050.1 31.579 190 123 3 76 264 6 189 2.27e-21 92.4
Msa0373490 AT1G10310.1 33.679 193 123 5 80 270 20 209 8.18e-21 90.1
Msa0373490 AT3G29260.1 29.804 255 161 7 73 317 4 250 8.84e-21 90.1
Msa0373490 AT3G47350.2 32.821 195 126 5 73 265 42 233 1.63e-20 90.5
Msa0373490 AT3G47350.1 32.821 195 126 5 73 265 42 233 1.67e-20 90.5
Msa0373490 AT2G47130.1 29.020 255 161 8 74 317 5 250 3.64e-20 88.6
Msa0373490 AT2G47140.1 28.235 255 166 7 73 317 4 251 1.56e-19 86.7
Msa0373490 AT4G05530.1 28.800 250 168 7 73 318 7 250 2.42e-19 86.3
Msa0373490 AT3G12800.1 27.237 257 174 5 75 320 10 264 9.06e-19 85.5
Msa0373490 AT3G29250.2 28.077 260 160 8 74 318 5 252 4.10e-18 82.8
Msa0373490 AT3G47360.1 31.884 207 131 6 73 272 43 246 1.37e-17 82.0
Msa0373490 AT3G29250.1 28.352 261 160 8 73 318 42 290 1.43e-17 82.0
Msa0373490 AT3G29250.3 28.077 260 160 8 74 318 41 288 1.93e-17 81.6
Msa0373490 AT5G50770.1 31.282 195 129 5 73 265 43 234 3.14e-16 78.6
Msa0373490 AT5G50700.1 28.947 190 128 6 79 265 49 234 9.27e-16 77.4
Msa0373490 AT5G50600.1 28.947 190 128 6 79 265 49 234 9.27e-16 77.4
Msa0373490 AT2G29350.2 30.151 199 131 5 81 277 21 213 2.65e-15 74.3
Msa0373490 AT3G06060.1 34.615 182 108 5 81 257 43 218 3.26e-15 75.5
Msa0373490 AT3G06060.2 35.165 182 107 6 81 257 60 235 3.42e-15 75.9
Msa0373490 AT5G19200.1 34.973 183 108 5 80 257 40 216 4.69e-15 75.1
Msa0373490 AT1G24470.1 28.205 195 129 6 81 268 56 246 8.01e-15 74.3
Msa0373490 AT1G67730.1 33.854 192 118 7 81 265 55 244 1.19e-14 73.9
Msa0373490 AT5G50590.2 30.366 191 126 6 73 260 43 229 2.72e-14 72.0
Msa0373490 AT5G50690.2 30.366 191 126 6 73 260 43 229 2.72e-14 72.0
Msa0373490 AT3G03330.1 29.268 205 120 6 73 262 39 233 4.14e-14 72.4
Msa0373490 AT5G50590.1 30.366 191 126 6 73 260 43 229 9.08e-14 71.2
Msa0373490 AT5G50690.1 30.366 191 126 6 73 260 43 229 9.08e-14 71.2
Msa0373490 AT4G10020.1 28.788 198 134 6 71 265 43 236 5.54e-13 69.3
Msa0373490 AT2G29340.3 26.702 191 138 2 81 270 13 202 1.98e-12 65.9
Msa0373490 AT2G29340.4 26.702 191 138 2 81 270 13 202 1.98e-12 65.9
Msa0373490 AT5G04900.1 27.500 200 122 7 80 264 82 273 6.69e-12 65.9
Msa0373490 AT2G29310.3 26.344 186 135 2 81 265 13 197 2.62e-11 62.4

Find 101 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGTCGTGTTAGCAAAAT+AGG 0.205410 3_1:+72542341 Msa0373490:three_prime_UTR
ATTTGGATGAACTGTGATTT+AGG 0.268514 3_1:-72542198 None:intergenic
AATCATCTCCGTCCTGTTTC+CGG 0.282070 3_1:+72538324 Msa0373490:CDS
TGCTGGATTAGTGGAATTCT+TGG 0.283631 3_1:+72541783 Msa0373490:CDS
TCATCAGTTGTTGGTTTGAT+TGG 0.305542 3_1:+72541381 Msa0373490:CDS
GCTGCAAAAGCAGGAGTAAT+TGG 0.309144 3_1:+72541429 Msa0373490:CDS
CTCAAGGTCATTTCCTAACT+TGG 0.314108 3_1:-72541621 None:intergenic
CCTAGATGTTCTTTGCTAGT+AGG 0.324392 3_1:+72542413 Msa0373490:three_prime_UTR
ACAGCAATGGCTTCTCTTAC+CGG 0.335931 3_1:+72538213 Msa0373490:exon
GGAAACCTCTTCAGCTTCCT+TGG 0.347864 3_1:-72539453 None:intergenic
TCATTTCATTTCATTTCCTC+TGG 0.350340 3_1:+72538167 Msa0373490:five_prime_UTR
ACTAATCCAGCAACTTCTTC+TGG 0.371540 3_1:-72541772 None:intergenic
ACGTTGAATTTAGGACGATA+TGG 0.382624 3_1:+72541745 Msa0373490:intron
TGTTCTTTGCTAGTAGGAAC+TGG 0.384204 3_1:+72542419 Msa0373490:three_prime_UTR
AGAAATAGTTGAAAACCATT+TGG 0.386208 3_1:-72542215 None:intergenic
AAAGCAATTGCGTTAGCGTT+AGG 0.392256 3_1:+72538575 Msa0373490:CDS
CAGGTTAATGCTGTTGCTCC+AGG 0.394323 3_1:+72541575 Msa0373490:intron
TTCCACTTTCTGAACTGCTT+CGG 0.396378 3_1:-72538510 None:intergenic
TCGCCGGTTGTGATTGTTAC+CGG 0.401377 3_1:+72538533 Msa0373490:CDS
ATCAATATTTCATCAGTTGT+TGG 0.404399 3_1:+72541372 Msa0373490:CDS
TTTGTAGGCAGTAGATGCTT+GGG 0.417671 3_1:+72540745 Msa0373490:intron
AATACTTCGTTTAACTCAAC+CGG 0.421392 3_1:+72538363 Msa0373490:CDS
TCTGACATGACTGCCAAGTT+AGG 0.421559 3_1:+72541608 Msa0373490:CDS
GTTGGTTTGATTGGCAATGC+TGG 0.445619 3_1:+72541390 Msa0373490:CDS
AGAAGAAGTTGCTGGATTAG+TGG 0.457509 3_1:+72541774 Msa0373490:CDS
TCTCATCAATAAACCATCTC+TGG 0.460320 3_1:-72540881 None:intergenic
TCCGATACCTCTGGAAGCTC+CGG 0.461105 3_1:-72538552 None:intergenic
ATTTGTAGGCAGTAGATGCT+TGG 0.464311 3_1:+72540744 Msa0373490:intron
TAAATCACAGTTCATCCAAA+TGG 0.467738 3_1:+72542200 Msa0373490:three_prime_UTR
TCCGCAACTTTCGCCGCCGC+CGG 0.472784 3_1:+72538258 Msa0373490:CDS
AATTATGCTGCTGCAAAAGC+AGG 0.487568 3_1:+72541420 Msa0373490:CDS
CTAGTTTGAAGACCGGAAAC+AGG 0.488153 3_1:-72538336 None:intergenic
GGCCAACCAGAAGAAGTTGC+TGG 0.489361 3_1:+72541766 Msa0373490:CDS
GGTTGAGTTAAACGAAGTAT+TGG 0.490467 3_1:-72538361 None:intergenic
CAAGCTGCCAGCTACATCAC+TGG 0.490614 3_1:+72541814 Msa0373490:CDS
CCTACTAGCAAAGAACATCT+AGG 0.490661 3_1:-72542413 None:intergenic
CGTTGTGTTTGTTAGTACTT+TGG 0.494267 3_1:-72538110 None:intergenic
TGTTAGTACTTTGGAAGCTC+CGG 0.497080 3_1:-72538101 None:intergenic
TTTCACCATTGATGGAGGTA+TGG 0.499842 3_1:+72542129 Msa0373490:CDS
CATCACCATACCTCCATCAA+TGG 0.506907 3_1:-72542134 None:intergenic
GAAATGAAGAGAAGAGAGGA+TGG 0.509610 3_1:-72538151 None:intergenic
GGAAGCTGAAGAGGTTTCCA+AGG 0.510390 3_1:+72539457 Msa0373490:CDS
TTTCATGAATATGCTCAACT+AGG 0.510501 3_1:-72542303 None:intergenic
GTGTAGGAGCTCAAATTGCT+AGG 0.513133 3_1:-72542176 None:intergenic
GCGTTAGCGTTAGGTAAAGC+AGG 0.516336 3_1:+72538584 Msa0373490:CDS
ATGTCAGATGCAATGAATCC+TGG 0.521848 3_1:-72541593 None:intergenic
AATGAAGAAGTCTCAGTGGC+AGG 0.522699 3_1:+72540903 Msa0373490:CDS
GGTGGGCAAGCTCTAACATA+TGG 0.524116 3_1:+72540610 Msa0373490:CDS
ACCGGAGCTTCCAGAGGTAT+CGG 0.526611 3_1:+72538551 Msa0373490:CDS
GGAACGGAGAGCGACGCAAT+TGG 0.527480 3_1:-72538238 None:intergenic
GAGAGCGACGCAATTGGATC+CGG 0.528319 3_1:-72538232 None:intergenic
ATCCAGCAACTTCTTCTGGT+TGG 0.533238 3_1:-72541768 None:intergenic
GGTTGCTACACTGGCGGACG+CGG 0.533600 3_1:+72538484 Msa0373490:CDS
ATTGGATCTAGTTTGAAGAC+CGG 0.545473 3_1:-72538343 None:intergenic
GATTATGATGAAGAATAAGA+AGG 0.545866 3_1:+72541070 Msa0373490:CDS
GTGAGAATGTTGTTATTGAG+TGG 0.546998 3_1:-72538075 None:intergenic
TTTCTCTCTCAAAACAGCAA+TGG 0.550544 3_1:+72538200 Msa0373490:exon
GTTATTGATCTAAATCTCAC+TGG 0.551796 3_1:+72540928 Msa0373490:CDS
GCTCCGGTAACAATCACAAC+CGG 0.558097 3_1:-72538536 None:intergenic
GAGAGCACAGGTTGCTACAC+TGG 0.559959 3_1:+72538475 Msa0373490:CDS
ACCGGCGGCGGCGAAAGTTG+CGG 0.562810 3_1:-72538259 None:intergenic
TGCCAGCTACATCACTGGGC+AGG 0.563723 3_1:+72541819 Msa0373490:CDS
GATTGAGAAGTGGAGAGTAA+TGG 0.569836 3_1:-72538305 None:intergenic
ATTGTTTATCAATACATCAA+CGG 0.570986 3_1:-72540771 None:intergenic
ATCATCCAAGGAAGCTGAAG+AGG 0.573441 3_1:+72539448 Msa0373490:CDS
GTTATAGGAATAACCAGAGA+TGG 0.573576 3_1:+72540868 Msa0373490:intron
CCTGACAAAATCTGTTGCAA+AGG 0.574173 3_1:+72541452 Msa0373490:CDS
GAGCATATTCATGAAATCAA+AGG 0.577527 3_1:+72542310 Msa0373490:three_prime_UTR
TGTAGGAGCTCAAATTGCTA+GGG 0.582898 3_1:-72542175 None:intergenic
AACCGAAGCAGTTCAGAAAG+TGG 0.583413 3_1:+72538508 Msa0373490:CDS
GATGTATTGATAAACAATGC+CGG 0.584295 3_1:+72540776 Msa0373490:CDS
AAATGAAATGAAGAGAAGAG+AGG 0.590934 3_1:-72538155 None:intergenic
AAACGATGTGTAGTCTCAGT+AGG 0.597863 3_1:-72538045 None:intergenic
AGTTCAGAAAGTGGAATCGC+CGG 0.598878 3_1:+72538517 Msa0373490:CDS
GTTAGGTAAAGCAGGTTGCA+AGG 0.599628 3_1:+72538592 Msa0373490:CDS
TGTAGATTGAAGCACTCGGT+GGG 0.599744 3_1:+72540593 Msa0373490:intron
CTAGCAAAGAACATCTAGGA+AGG 0.604066 3_1:-72542409 None:intergenic
CTTCAAAATATTCACCTGTG+TGG 0.605776 3_1:-72540962 None:intergenic
CAACTATGCAAGATCATCCA+AGG 0.609283 3_1:+72539436 Msa0373490:CDS
GGGCAAGCTCTAACATATGG+TGG 0.611395 3_1:+72540613 Msa0373490:CDS
GGACGGAGATGATTGAGAAG+TGG 0.616684 3_1:-72538315 None:intergenic
ATGAACTGTGATTTAGGTGT+AGG 0.620376 3_1:-72542192 None:intergenic
TTGTAGATTGAAGCACTCGG+TGG 0.621839 3_1:+72540592 Msa0373490:intron
AAGCTGCCAGCTACATCACT+GGG 0.623670 3_1:+72541815 Msa0373490:CDS
GAGAAAATGGAAGAAGCCAG+AGG 0.640632 3_1:-72538183 None:intergenic
CGGCGGCGAAAGTTGCGGAA+CGG 0.643011 3_1:-72538254 None:intergenic
GCAAAGGAATATTCTAGCAG+AGG 0.644543 3_1:+72541468 Msa0373490:CDS
TTGTAGGCAGTAGATGCTTG+GGG 0.648579 3_1:+72540746 Msa0373490:intron
ATAACAACATTCTCACACTC+CGG 0.650450 3_1:+72538082 Msa0373490:five_prime_UTR
ATTGTTACCGGAGCTTCCAG+AGG 0.650765 3_1:+72538545 Msa0373490:CDS
GAATGTTGTTATTGAGTGGA+CGG 0.655046 3_1:-72538071 None:intergenic
TGAGCTGTGAAGCTTAGCAA+TGG 0.656875 3_1:-72538022 None:intergenic
TGAGAAGTGGAGAGTAATGG+CGG 0.660025 3_1:-72538302 None:intergenic
AGCTGAAGAGGTTTCCAAGG+AGG 0.661491 3_1:+72539460 Msa0373490:CDS
TTTGAAGACCGGAAACAGGA+CGG 0.661800 3_1:-72538332 None:intergenic
AGCACAGGTTGCTACACTGG+CGG 0.662783 3_1:+72538478 Msa0373490:CDS
TATTTGTAGATTGAAGCACT+CGG 0.665627 3_1:+72540589 Msa0373490:intron
GAAGAAGTCTCAGTGGCAGG+AGG 0.670136 3_1:+72540906 Msa0373490:CDS
GACCTGCCCAGTGATGTAGC+TGG 0.695510 3_1:-72541821 None:intergenic
GGATTCTACTATAAATCACA+AGG 0.706707 3_1:-72542282 None:intergenic
TGAGAATGAAGAAGTCTCAG+TGG 0.725436 3_1:+72540899 Msa0373490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTATTACTCTTTTATTTT+TGG + chr3_1:72538862-72538881 Msa0373490:intron 15.0%
!! ACATTACATATTAAAAGTAA+CGG - chr3_1:72539660-72539679 None:intergenic 15.0%
!! GGATGAAATTTAATAAATAA+GGG - chr3_1:72540224-72540243 None:intergenic 15.0%
!! TGGATGAAATTTAATAAATA+AGG - chr3_1:72540225-72540244 None:intergenic 15.0%
!! AAGCACAATATTAAAAATTA+TGG - chr3_1:72540420-72540439 None:intergenic 15.0%
!! ATATCAGATTAAAAAGAAAA+GGG - chr3_1:72541016-72541035 None:intergenic 15.0%
!! AAAAAATTAGAATCAAACTT+TGG - chr3_1:72541263-72541282 None:intergenic 15.0%
!! TGTATAATGTACTTATAAAA+CGG - chr3_1:72541877-72541896 None:intergenic 15.0%
!!! CAACATTCATGTTTATTTTT+TGG + chr3_1:72538660-72538679 Msa0373490:intron 20.0%
!! TTTGATATTATTGTTACAAG+TGG + chr3_1:72539283-72539302 Msa0373490:intron 20.0%
!! CATAAAAACAGAAACATTAA+TGG - chr3_1:72539536-72539555 None:intergenic 20.0%
!! ATTAGTATAAACTTTAACCA+TGG - chr3_1:72539576-72539595 None:intergenic 20.0%
!! TATAAGTCTACCAAATATTT+GGG - chr3_1:72539755-72539774 None:intergenic 20.0%
!! TTATAAGTCTACCAAATATT+TGG - chr3_1:72539756-72539775 None:intergenic 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG - chr3_1:72540308-72540327 None:intergenic 20.0%
!! ATTGTTTATCAATACATCAA+CGG - chr3_1:72540774-72540793 None:intergenic 20.0%
!! CATATCAGATTAAAAAGAAA+AGG - chr3_1:72541017-72541036 None:intergenic 20.0%
!! ATTTAACAATTGACAATATC+AGG - chr3_1:72541529-72541548 None:intergenic 20.0%
!! ACAACATCTTCAATAAATTA+CGG - chr3_1:72541702-72541721 None:intergenic 20.0%
! CATTATCAGTTTATGTCTAA+CGG - chr3_1:72538632-72538651 None:intergenic 25.0%
! ATCTAAAGAATATGATCTTG+CGG + chr3_1:72538922-72538941 Msa0373490:intron 25.0%
!!! TAAATCAACCAGAACTTTTT+TGG - chr3_1:72539121-72539140 None:intergenic 25.0%
!! ATTATTGTTACAAGTGGTTT+TGG + chr3_1:72539289-72539308 Msa0373490:intron 25.0%
!! TACATGCACTTAATATTTTC+AGG + chr3_1:72539406-72539425 Msa0373490:intron 25.0%
!!! CACTTAATATTTTCAGGTTT+TGG + chr3_1:72539412-72539431 Msa0373490:intron 25.0%
! ATAATCACACATATTTCAGA+AGG - chr3_1:72539496-72539515 None:intergenic 25.0%
!! TTTTATGCCAATCTAATATC+AGG + chr3_1:72539549-72539568 Msa0373490:intron 25.0%
! ATAAGTCTACCAAATATTTG+GGG - chr3_1:72539754-72539773 None:intergenic 25.0%
! ATTTGGTAGACTTATAAAGT+TGG + chr3_1:72539759-72539778 Msa0373490:intron 25.0%
! CTAAAACTATAATATCGTTG+AGG - chr3_1:72539806-72539825 None:intergenic 25.0%
!!! ATTCTATGATTTTTTTAGCC+AGG + chr3_1:72539973-72539992 Msa0373490:intron 25.0%
!!! TTCTATGATTTTTTTAGCCA+GGG + chr3_1:72539974-72539993 Msa0373490:intron 25.0%
! CACAATTAATGTTAATGACT+TGG + chr3_1:72540072-72540091 Msa0373490:intron 25.0%
!!! AAGAGACAATTATTTTGAGA+CGG - chr3_1:72540123-72540142 None:intergenic 25.0%
!! AATAAATAAGGGCATAATAG+TGG - chr3_1:72540213-72540232 None:intergenic 25.0%
! CTCTTATTAATTGTAGTTAG+TGG - chr3_1:72540259-72540278 None:intergenic 25.0%
!!! AAACGACTATTATTTTGAGA+TGG + chr3_1:72540356-72540375 Msa0373490:intron 25.0%
!!! TAGTGTTCATGCTATTTTAT+TGG + chr3_1:72540533-72540552 Msa0373490:intron 25.0%
! TTTATGACTTTCACATTTGT+AGG + chr3_1:72540730-72540749 Msa0373490:intron 25.0%
! ATACTCAAACAAAGATTGTA+TGG + chr3_1:72540846-72540865 Msa0373490:intron 25.0%
! AACAAAGATTGTATGGTTAT+AGG + chr3_1:72540853-72540872 Msa0373490:intron 25.0%
!!! AGACTGTTAATTTTTTTTGC+AGG + chr3_1:72541037-72541056 Msa0373490:intron 25.0%
! GATTATGATGAAGAATAAGA+AGG + chr3_1:72541070-72541089 Msa0373490:CDS 25.0%
! CCTACAAGAAATCATAAAAT+GGG - chr3_1:72541122-72541141 None:intergenic 25.0%
! TCCTACAAGAAATCATAAAA+TGG - chr3_1:72541123-72541142 None:intergenic 25.0%
! GGAATAATTAATGACTTGAA+CGG - chr3_1:72541167-72541186 None:intergenic 25.0%
! GTCATTAATTATTCCTAAAG+TGG + chr3_1:72541172-72541191 Msa0373490:intron 25.0%
! TTGAGAAAAAATTCCACTTT+AGG - chr3_1:72541188-72541207 None:intergenic 25.0%
! AATTCTTATTGTTCCTAGAT+AGG - chr3_1:72541236-72541255 None:intergenic 25.0%
!! ATACTCTACTTTAGGAATAA+AGG - chr3_1:72541309-72541328 None:intergenic 25.0%
! AAAAGTAGATACTCTACTTT+AGG - chr3_1:72541317-72541336 None:intergenic 25.0%
! ATCAATATTTCATCAGTTGT+TGG + chr3_1:72541372-72541391 Msa0373490:CDS 25.0%
! TATTTCTTGCATTTACCTAA+TGG - chr3_1:72541668-72541687 None:intergenic 25.0%
!!! ATTTTTTGCACGTTGAATTT+AGG + chr3_1:72541736-72541755 Msa0373490:intron 25.0%
! ATGTAGTTATGATATCCAAA+GGG - chr3_1:72541927-72541946 None:intergenic 25.0%
! TATGTAGTTATGATATCCAA+AGG - chr3_1:72541928-72541947 None:intergenic 25.0%
!! TTTAAGACATGCTCAATTTA+TGG + chr3_1:72541994-72542013 Msa0373490:intron 25.0%
! AGAAATAGTTGAAAACCATT+TGG - chr3_1:72542218-72542237 None:intergenic 25.0%
!!! AAATCAAAGGTGTTTTAACA+AGG + chr3_1:72542323-72542342 Msa0373490:three_prime_UTR 25.0%
AAATGAAATGAAGAGAAGAG+AGG - chr3_1:72538158-72538177 None:intergenic 30.0%
TCATTTCATTTCATTTCCTC+TGG + chr3_1:72538167-72538186 Msa0373490:five_prime_UTR 30.0%
AATACTTCGTTTAACTCAAC+CGG + chr3_1:72538363-72538382 Msa0373490:CDS 30.0%
ACAAGTTACATAAATTGCGA+TGG - chr3_1:72538786-72538805 None:intergenic 30.0%
AGATTTCTAACAAGATTACC+AGG - chr3_1:72538961-72538980 None:intergenic 30.0%
AATTTCTGACAGAAATTTGG+GGG - chr3_1:72539003-72539022 None:intergenic 30.0%
CAATTTCTGACAGAAATTTG+GGG - chr3_1:72539004-72539023 None:intergenic 30.0%
CCAATTTCTGACAGAAATTT+GGG - chr3_1:72539005-72539024 None:intergenic 30.0%
CAATAGTTAGAATTCCTTGT+AGG + chr3_1:72539025-72539044 Msa0373490:intron 30.0%
!!! CAGAACTTTTTTGGAAATGA+AGG - chr3_1:72539112-72539131 None:intergenic 30.0%
CTTCATTTCCAAAAAAGTTC+TGG + chr3_1:72539110-72539129 Msa0373490:intron 30.0%
! TGCTGTAAATGTAATGCTTT+TGG + chr3_1:72539368-72539387 Msa0373490:intron 30.0%
CATAGAATGATCAACATCTT+TGG - chr3_1:72539961-72539980 None:intergenic 30.0%
TTTATCAATTTCACCTCAAC+TGG - chr3_1:72540046-72540065 None:intergenic 30.0%
AAGTTTGTGCACGATATTTA+AGG - chr3_1:72540336-72540355 None:intergenic 30.0%
!!! GACTATTATTTTGAGATGGA+GGG + chr3_1:72540360-72540379 Msa0373490:intron 30.0%
ATGTTATATTGATGCATGCT+TGG + chr3_1:72540471-72540490 Msa0373490:intron 30.0%
! TATTTGTAGATTGAAGCACT+CGG + chr3_1:72540589-72540608 Msa0373490:intron 30.0%
! GATGTATTGATAAACAATGC+CGG + chr3_1:72540776-72540795 Msa0373490:CDS 30.0%
! ACAAGATCTTTTCAACTTAC+CGG - chr3_1:72540798-72540817 None:intergenic 30.0%
! CAATCTTTGTTTGAGTATGA+GGG - chr3_1:72540844-72540863 None:intergenic 30.0%
! ACAATCTTTGTTTGAGTATG+AGG - chr3_1:72540845-72540864 None:intergenic 30.0%
GTTATTGATCTAAATCTCAC+TGG + chr3_1:72540928-72540947 Msa0373490:CDS 30.0%
!!! CTGTTAATTTTTTTTGCAGG+CGG + chr3_1:72541040-72541059 Msa0373490:intron 30.0%
CAAGAAATCATAAAATGGGA+AGG - chr3_1:72541118-72541137 None:intergenic 30.0%
! CCCATTTTATGATTTCTTGT+AGG + chr3_1:72541119-72541138 Msa0373490:intron 30.0%
!! AGGATTTGTTGAGAAATTAG+AGG - chr3_1:72541216-72541235 None:intergenic 30.0%
TTTCTCAACAAATCCTATCT+AGG + chr3_1:72541220-72541239 Msa0373490:intron 30.0%
!! AGAGTATCTACTTTTAAACG+TGG + chr3_1:72541322-72541341 Msa0373490:intron 30.0%
!!! TGGATGCTTGTATTTTTTCA+GGG + chr3_1:72541342-72541361 Msa0373490:intron 30.0%
! TGACCTTGAGAAAAAGATTT+TGG + chr3_1:72541634-72541653 Msa0373490:CDS 30.0%
CGTGCAAAAAATAAGTTAAG+CGG - chr3_1:72541728-72541747 None:intergenic 30.0%
TATAACTTACAAACACCCTT+TGG + chr3_1:72541909-72541928 Msa0373490:intron 30.0%
ATTTCAGAGTTTCGATAAGT+TGG - chr3_1:72541975-72541994 None:intergenic 30.0%
ATAAAGAACCCTAACATGAT+AGG - chr3_1:72542038-72542057 None:intergenic 30.0%
ATTTGGATGAACTGTGATTT+AGG - chr3_1:72542201-72542220 None:intergenic 30.0%
TAAATCACAGTTCATCCAAA+TGG + chr3_1:72542200-72542219 Msa0373490:three_prime_UTR 30.0%
GGATTCTACTATAAATCACA+AGG - chr3_1:72542285-72542304 None:intergenic 30.0%
TTTCATGAATATGCTCAACT+AGG - chr3_1:72542306-72542325 None:intergenic 30.0%
GAGCATATTCATGAAATCAA+AGG + chr3_1:72542310-72542329 Msa0373490:three_prime_UTR 30.0%
! GAATGTTGTTATTGAGTGGA+CGG - chr3_1:72538074-72538093 None:intergenic 35.0%
! GTGAGAATGTTGTTATTGAG+TGG - chr3_1:72538078-72538097 None:intergenic 35.0%
ATAACAACATTCTCACACTC+CGG + chr3_1:72538082-72538101 Msa0373490:five_prime_UTR 35.0%
! CGTTGTGTTTGTTAGTACTT+TGG - chr3_1:72538113-72538132 None:intergenic 35.0%
!!! TGCTGTTTTGAGAGAGAAAA+TGG - chr3_1:72538199-72538218 None:intergenic 35.0%
TTTCTCTCTCAAAACAGCAA+TGG + chr3_1:72538200-72538219 Msa0373490:exon 35.0%
! ATTGGATCTAGTTTGAAGAC+CGG - chr3_1:72538346-72538365 None:intergenic 35.0%
GGTTGAGTTAAACGAAGTAT+TGG - chr3_1:72538364-72538383 None:intergenic 35.0%
! GAAGAAATGAAGAAGAGTAC+CGG - chr3_1:72538385-72538404 None:intergenic 35.0%
!! GTAACTTGTTCATGAATCAC+TGG + chr3_1:72538797-72538816 Msa0373490:intron 35.0%
TGCGGTAATAATGAAATTCC+TGG + chr3_1:72538940-72538959 Msa0373490:intron 35.0%
CCCAAATTTCTGTCAGAAAT+TGG + chr3_1:72539002-72539021 Msa0373490:intron 35.0%
GCCAATTTCTGACAGAAATT+TGG - chr3_1:72539006-72539025 None:intergenic 35.0%
TCATTGCAAGGACTAAAAGA+CGG - chr3_1:72539330-72539349 None:intergenic 35.0%
ACAACTCTGATTTCATTGCA+AGG - chr3_1:72539342-72539361 None:intergenic 35.0%
TTCATTCTGCCCCAAATATT+TGG + chr3_1:72539742-72539761 Msa0373490:intron 35.0%
TGGTAGACTTATAAAGTTGG+TGG + chr3_1:72539762-72539781 Msa0373490:intron 35.0%
AATGATCAACATCTTTGGCT+GGG - chr3_1:72539956-72539975 None:intergenic 35.0%
!!! TTTTTTTAGCCAGGGTTTCA+TGG + chr3_1:72539982-72540001 Msa0373490:intron 35.0%
TGTTCTTTCTTTACCAGTTG+AGG + chr3_1:72540030-72540049 Msa0373490:intron 35.0%
!!! GACAATTATTTTGAGACGGA+GGG - chr3_1:72540119-72540138 None:intergenic 35.0%
!!! AGACAATTATTTTGAGACGG+AGG - chr3_1:72540120-72540139 None:intergenic 35.0%
!!! CGACTATTATTTTGAGATGG+AGG + chr3_1:72540359-72540378 Msa0373490:intron 35.0%
TGAAAGTCATAAAGCAGCAA+AGG - chr3_1:72540723-72540742 None:intergenic 35.0%
AGTATGAGGGAAGATAGAAA+GGG - chr3_1:72540831-72540850 None:intergenic 35.0%
GTTATAGGAATAACCAGAGA+TGG + chr3_1:72540868-72540887 Msa0373490:intron 35.0%
TCTCATCAATAAACCATCTC+TGG - chr3_1:72540884-72540903 None:intergenic 35.0%
CTTCAAAATATTCACCTGTG+TGG - chr3_1:72540965-72540984 None:intergenic 35.0%
TTCTTGTAGGAGTCCTATTT+AGG + chr3_1:72541132-72541151 Msa0373490:intron 35.0%
!!! GTGGATGCTTGTATTTTTTC+AGG + chr3_1:72541341-72541360 Msa0373490:intron 35.0%
!!! TGCTTGTATTTTTTCAGGGA+AGG + chr3_1:72541346-72541365 Msa0373490:intron 35.0%
!! TCATCAGTTGTTGGTTTGAT+TGG + chr3_1:72541381-72541400 Msa0373490:CDS 35.0%
TTAACCTGGCAAGAAAAACA+GGG - chr3_1:72541563-72541582 None:intergenic 35.0%
ATTAACCTGGCAAGAAAAAC+AGG - chr3_1:72541564-72541583 None:intergenic 35.0%
! CCTCCAAAATCTTTTTCTCA+AGG - chr3_1:72541640-72541659 None:intergenic 35.0%
! CCTTGAGAAAAAGATTTTGG+AGG + chr3_1:72541637-72541656 Msa0373490:CDS 35.0%
!! ATTTTGGAGGCAATTCCATT+AGG + chr3_1:72541650-72541669 Msa0373490:CDS 35.0%
! ACGTTGAATTTAGGACGATA+TGG + chr3_1:72541745-72541764 Msa0373490:intron 35.0%
AGACATGCTCAATTTATGGT+TGG + chr3_1:72541998-72542017 Msa0373490:intron 35.0%
ATCATCTGTCCTATCATGTT+AGG + chr3_1:72542026-72542045 Msa0373490:intron 35.0%
TCATCTGTCCTATCATGTTA+GGG + chr3_1:72542027-72542046 Msa0373490:intron 35.0%
TACTATAATTACCGTGTTGC+AGG + chr3_1:72542105-72542124 Msa0373490:intron 35.0%
ATGAACTGTGATTTAGGTGT+AGG - chr3_1:72542195-72542214 None:intergenic 35.0%
!! ATTATATTTTCTGGCCTCTG+AGG + chr3_1:72542375-72542394 Msa0373490:three_prime_UTR 35.0%
AGGAAAAAACTAAACCTCAG+AGG - chr3_1:72542392-72542411 None:intergenic 35.0%
! CTGTCAAAGCTAAGTTTTTG+TGG + chr3_1:72542487-72542506 Msa0373490:three_prime_UTR 35.0%
AAACGATGTGTAGTCTCAGT+AGG - chr3_1:72538048-72538067 None:intergenic 40.0%
! TGTTAGTACTTTGGAAGCTC+CGG - chr3_1:72538104-72538123 None:intergenic 40.0%
GAAATGAAGAGAAGAGAGGA+TGG - chr3_1:72538154-72538173 None:intergenic 40.0%
! CTGAGTGATTTTACGGTTAC+CGG - chr3_1:72538280-72538299 None:intergenic 40.0%
GATTGAGAAGTGGAGAGTAA+TGG - chr3_1:72538308-72538327 None:intergenic 40.0%
TTCCACTTTCTGAACTGCTT+CGG - chr3_1:72538513-72538532 None:intergenic 40.0%
!! AATTGCTTTTCCGATACCTC+TGG - chr3_1:72538564-72538583 None:intergenic 40.0%
AAAGCAATTGCGTTAGCGTT+AGG + chr3_1:72538575-72538594 Msa0373490:CDS 40.0%
! TTTTCCTCTTCATACGTAGC+AGG + chr3_1:72538758-72538777 Msa0373490:intron 40.0%
GCGAGTTAAAAAATGTGCGT+TGG + chr3_1:72538830-72538849 Msa0373490:intron 40.0%
! TGCTTTTGGATCCTGATGTT+CGG + chr3_1:72539382-72539401 Msa0373490:intron 40.0%
CAACTATGCAAGATCATCCA+AGG + chr3_1:72539436-72539455 Msa0373490:CDS 40.0%
CCATGGTCCTGATATTAGAT+TGG - chr3_1:72539559-72539578 None:intergenic 40.0%
CCAATCTAATATCAGGACCA+TGG + chr3_1:72539556-72539575 Msa0373490:intron 40.0%
GAATGATCAACATCTTTGGC+TGG - chr3_1:72539957-72539976 None:intergenic 40.0%
AATAGAAGACCATGAAACCC+TGG - chr3_1:72539994-72540013 None:intergenic 40.0%
AGTTAGTGGAGTAGTCAAGT+TGG - chr3_1:72540245-72540264 None:intergenic 40.0%
! TTTACAGCAGTAGTTCTGTG+TGG + chr3_1:72540438-72540457 Msa0373490:intron 40.0%
ATTTGTAGGCAGTAGATGCT+TGG + chr3_1:72540744-72540763 Msa0373490:intron 40.0%
TTTGTAGGCAGTAGATGCTT+GGG + chr3_1:72540745-72540764 Msa0373490:intron 40.0%
GAGTATGAGGGAAGATAGAA+AGG - chr3_1:72540832-72540851 None:intergenic 40.0%
TGAGAATGAAGAAGTCTCAG+TGG + chr3_1:72540899-72540918 Msa0373490:CDS 40.0%
! TGGTGTTTTTCTTTCCACAC+AGG + chr3_1:72540948-72540967 Msa0373490:CDS 40.0%
GGAGTCCTATTTAGGAACAA+TGG + chr3_1:72541140-72541159 Msa0373490:intron 40.0%
ACGGTCCATTGTTCCTAAAT+AGG - chr3_1:72541148-72541167 None:intergenic 40.0%
! TGCTTTTGCAGCAGCATAAT+TGG - chr3_1:72541421-72541440 None:intergenic 40.0%
AATTATGCTGCTGCAAAAGC+AGG + chr3_1:72541420-72541439 Msa0373490:CDS 40.0%
! CCTTTGCAACAGATTTTGTC+AGG - chr3_1:72541455-72541474 None:intergenic 40.0%
CCTGACAAAATCTGTTGCAA+AGG + chr3_1:72541452-72541471 Msa0373490:CDS 40.0%
GCAAAGGAATATTCTAGCAG+AGG + chr3_1:72541468-72541487 Msa0373490:CDS 40.0%
!! AAAACCCTGTTTTTCTTGCC+AGG + chr3_1:72541556-72541575 Msa0373490:intron 40.0%
ATGTCAGATGCAATGAATCC+TGG - chr3_1:72541596-72541615 None:intergenic 40.0%
CTCAAGGTCATTTCCTAACT+TGG - chr3_1:72541624-72541643 None:intergenic 40.0%
ACTAATCCAGCAACTTCTTC+TGG - chr3_1:72541775-72541794 None:intergenic 40.0%
! AGAAGAAGTTGCTGGATTAG+TGG + chr3_1:72541774-72541793 Msa0373490:CDS 40.0%
!! TGCTGGATTAGTGGAATTCT+TGG + chr3_1:72541783-72541802 Msa0373490:CDS 40.0%
! TCAGAGTTTCGATAAGTTGG+CGG - chr3_1:72541972-72541991 None:intergenic 40.0%
AATGGTGAAAACCTGCAACA+CGG - chr3_1:72542119-72542138 None:intergenic 40.0%
! TTGCAGGTTTTCACCATTGA+TGG + chr3_1:72542121-72542140 Msa0373490:intron 40.0%
TTTCACCATTGATGGAGGTA+TGG + chr3_1:72542129-72542148 Msa0373490:CDS 40.0%
TGTAGGAGCTCAAATTGCTA+GGG - chr3_1:72542178-72542197 None:intergenic 40.0%
CAAGGTCGTGTTAGCAAAAT+AGG + chr3_1:72542341-72542360 Msa0373490:three_prime_UTR 40.0%
CTAGCAAAGAACATCTAGGA+AGG - chr3_1:72542412-72542431 None:intergenic 40.0%
CCTACTAGCAAAGAACATCT+AGG - chr3_1:72542416-72542435 None:intergenic 40.0%
CCTAGATGTTCTTTGCTAGT+AGG + chr3_1:72542413-72542432 Msa0373490:three_prime_UTR 40.0%
TGTTCTTTGCTAGTAGGAAC+TGG + chr3_1:72542419-72542438 Msa0373490:three_prime_UTR 40.0%
TGAGCTGTGAAGCTTAGCAA+TGG - chr3_1:72538025-72538044 None:intergenic 45.0%
GAGAAAATGGAAGAAGCCAG+AGG - chr3_1:72538186-72538205 None:intergenic 45.0%
ACAGCAATGGCTTCTCTTAC+CGG + chr3_1:72538213-72538232 Msa0373490:exon 45.0%
! AGTGATTTTACGGTTACCGG+CGG - chr3_1:72538277-72538296 None:intergenic 45.0%
! GGCGGATCTGAGTGATTTTA+CGG - chr3_1:72538287-72538306 None:intergenic 45.0%
TGAGAAGTGGAGAGTAATGG+CGG - chr3_1:72538305-72538324 None:intergenic 45.0%
AATCATCTCCGTCCTGTTTC+CGG + chr3_1:72538324-72538343 Msa0373490:CDS 45.0%
TTTGAAGACCGGAAACAGGA+CGG - chr3_1:72538335-72538354 None:intergenic 45.0%
CTAGTTTGAAGACCGGAAAC+AGG - chr3_1:72538339-72538358 None:intergenic 45.0%
AACCGAAGCAGTTCAGAAAG+TGG + chr3_1:72538508-72538527 Msa0373490:CDS 45.0%
AGTTCAGAAAGTGGAATCGC+CGG + chr3_1:72538517-72538536 Msa0373490:CDS 45.0%
GTTAGGTAAAGCAGGTTGCA+AGG + chr3_1:72538592-72538611 Msa0373490:CDS 45.0%
AGGAGAGCTACAAACCTACA+AGG - chr3_1:72539042-72539061 None:intergenic 45.0%
GTAGGTTTGTAGCTCTCCTT+AGG + chr3_1:72539043-72539062 Msa0373490:intron 45.0%
TGACAACCAAACTGAGCCTA+AGG - chr3_1:72539062-72539081 None:intergenic 45.0%
AGTGCATGTAACCGAACATC+AGG - chr3_1:72539396-72539415 None:intergenic 45.0%
ATCATCCAAGGAAGCTGAAG+AGG + chr3_1:72539448-72539467 Msa0373490:CDS 45.0%
! AAGGCAGTTTTCTACCTCCT+TGG - chr3_1:72539477-72539496 None:intergenic 45.0%
ACTTGACACTCCTTGTTCCT+GGG - chr3_1:72539857-72539876 None:intergenic 45.0%
AACATCTTTGGCTGGGAATC+AGG - chr3_1:72539949-72539968 None:intergenic 45.0%
! TTGTAGATTGAAGCACTCGG+TGG + chr3_1:72540592-72540611 Msa0373490:intron 45.0%
! TGTAGATTGAAGCACTCGGT+GGG + chr3_1:72540593-72540612 Msa0373490:intron 45.0%
TTGTAGGCAGTAGATGCTTG+GGG + chr3_1:72540746-72540765 Msa0373490:intron 45.0%
AATGAAGAAGTCTCAGTGGC+AGG + chr3_1:72540903-72540922 Msa0373490:CDS 45.0%
!! GTTGGTTTGATTGGCAATGC+TGG + chr3_1:72541390-72541409 Msa0373490:CDS 45.0%
GCTGCAAAAGCAGGAGTAAT+TGG + chr3_1:72541429-72541448 Msa0373490:CDS 45.0%
TCTGACATGACTGCCAAGTT+AGG + chr3_1:72541608-72541627 Msa0373490:CDS 45.0%
ATCCAGCAACTTCTTCTGGT+TGG - chr3_1:72541771-72541790 None:intergenic 45.0%
! CAGGTTTTCACCATTGATGG+AGG + chr3_1:72542124-72542143 Msa0373490:intron 45.0%
CATCACCATACCTCCATCAA+TGG - chr3_1:72542137-72542156 None:intergenic 45.0%
GTGTAGGAGCTCAAATTGCT+AGG - chr3_1:72542179-72542198 None:intergenic 45.0%
!!! ATAATTATTATTATATTTTC+TGG + chr3_1:72542366-72542385 Msa0373490:three_prime_UTR 5.0%
GGACGGAGATGATTGAGAAG+TGG - chr3_1:72538318-72538337 None:intergenic 50.0%
! ATTCGAGAACGCGCGTTTTC+AGG + chr3_1:72538449-72538468 Msa0373490:intron 50.0%
!!! GTTTTCAGGTGTGAGAGCAC+AGG + chr3_1:72538463-72538482 Msa0373490:intron 50.0%
! TCGCCGGTTGTGATTGTTAC+CGG + chr3_1:72538533-72538552 Msa0373490:CDS 50.0%
GCTCCGGTAACAATCACAAC+CGG - chr3_1:72538539-72538558 None:intergenic 50.0%
ATTGTTACCGGAGCTTCCAG+AGG + chr3_1:72538545-72538564 Msa0373490:CDS 50.0%
GCGTTAGCGTTAGGTAAAGC+AGG + chr3_1:72538584-72538603 Msa0373490:CDS 50.0%
AGCTCTCCTTAGGCTCAGTT+TGG + chr3_1:72539053-72539072 Msa0373490:intron 50.0%
GGAAACCTCTTCAGCTTCCT+TGG - chr3_1:72539456-72539475 None:intergenic 50.0%
GGAAGCTGAAGAGGTTTCCA+AGG + chr3_1:72539457-72539476 Msa0373490:CDS 50.0%
AGCTGAAGAGGTTTCCAAGG+AGG + chr3_1:72539460-72539479 Msa0373490:CDS 50.0%
! CTTCGATAAGTTTTCCCCCC+AGG + chr3_1:72539837-72539856 Msa0373490:intron 50.0%
! AAGTTTTCCCCCCAGGAACA+AGG + chr3_1:72539844-72539863 Msa0373490:intron 50.0%
TTGACACTCCTTGTTCCTGG+GGG - chr3_1:72539855-72539874 None:intergenic 50.0%
CTTGACACTCCTTGTTCCTG+GGG - chr3_1:72539856-72539875 None:intergenic 50.0%
CACTTGACACTCCTTGTTCC+TGG - chr3_1:72539858-72539877 None:intergenic 50.0%
! GGTGGGCAAGCTCTAACATA+TGG + chr3_1:72540610-72540629 Msa0373490:CDS 50.0%
! GGGCAAGCTCTAACATATGG+TGG + chr3_1:72540613-72540632 Msa0373490:CDS 50.0%
CTGGAGCAACAGCATTAACC+TGG - chr3_1:72541577-72541596 None:intergenic 50.0%
CAGGTTAATGCTGTTGCTCC+AGG + chr3_1:72541575-72541594 Msa0373490:intron 50.0%
AAGCTGCCAGCTACATCACT+GGG + chr3_1:72541815-72541834 Msa0373490:CDS 50.0%
GAGAGCGACGCAATTGGATC+CGG - chr3_1:72538235-72538254 None:intergenic 55.0%
! GATTTTACGGTTACCGGCGG+CGG - chr3_1:72538274-72538293 None:intergenic 55.0%
! GAGAGCACAGGTTGCTACAC+TGG + chr3_1:72538475-72538494 Msa0373490:CDS 55.0%
AGCACAGGTTGCTACACTGG+CGG + chr3_1:72538478-72538497 Msa0373490:CDS 55.0%
! ACCGGAGCTTCCAGAGGTAT+CGG + chr3_1:72538551-72538570 Msa0373490:CDS 55.0%
! TCCGATACCTCTGGAAGCTC+CGG - chr3_1:72538555-72538574 None:intergenic 55.0%
GGAGCCTGCTACGTATGAAG+AGG - chr3_1:72538765-72538784 None:intergenic 55.0%
TGACACTCCTTGTTCCTGGG+GGG - chr3_1:72539854-72539873 None:intergenic 55.0%
GAAGAAGTCTCAGTGGCAGG+AGG + chr3_1:72540906-72540925 Msa0373490:CDS 55.0%
GGCCAACCAGAAGAAGTTGC+TGG + chr3_1:72541766-72541785 Msa0373490:CDS 55.0%
CAAGCTGCCAGCTACATCAC+TGG + chr3_1:72541814-72541833 Msa0373490:CDS 55.0%
GGAACGGAGAGCGACGCAAT+TGG - chr3_1:72538241-72538260 None:intergenic 60.0%
TGCCAGCTACATCACTGGGC+AGG + chr3_1:72541819-72541838 Msa0373490:CDS 60.0%
GACCTGCCCAGTGATGTAGC+TGG - chr3_1:72541824-72541843 None:intergenic 60.0%
CGGCGGCGAAAGTTGCGGAA+CGG - chr3_1:72538257-72538276 None:intergenic 65.0%
! GGTTGCTACACTGGCGGACG+CGG + chr3_1:72538484-72538503 Msa0373490:CDS 65.0%
TCCGCAACTTTCGCCGCCGC+CGG + chr3_1:72538258-72538277 Msa0373490:CDS 70.0%
ACCGGCGGCGGCGAAAGTTG+CGG - chr3_1:72538262-72538281 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72538018 72542585 72538018 ID=Msa0373490;Name=Msa0373490
chr3_1 mRNA 72538018 72542585 72538018 ID=Msa0373490-mRNA-1;Parent=Msa0373490;Name=Msa0373490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=201|1|1|1|1|1|11|426|320
chr3_1 exon 72538018 72538384 72538018 ID=Msa0373490-mRNA-1:exon:16230;Parent=Msa0373490-mRNA-1
chr3_1 exon 72538471 72538613 72538471 ID=Msa0373490-mRNA-1:exon:16231;Parent=Msa0373490-mRNA-1
chr3_1 exon 72539428 72539481 72539428 ID=Msa0373490-mRNA-1:exon:16232;Parent=Msa0373490-mRNA-1
chr3_1 exon 72540598 72540678 72540598 ID=Msa0373490-mRNA-1:exon:16233;Parent=Msa0373490-mRNA-1
chr3_1 exon 72540752 72540797 72540752 ID=Msa0373490-mRNA-1:exon:16234;Parent=Msa0373490-mRNA-1
chr3_1 exon 72540875 72540969 72540875 ID=Msa0373490-mRNA-1:exon:16235;Parent=Msa0373490-mRNA-1
chr3_1 exon 72541059 72541091 72541059 ID=Msa0373490-mRNA-1:exon:16236;Parent=Msa0373490-mRNA-1
chr3_1 exon 72541363 72541497 72541363 ID=Msa0373490-mRNA-1:exon:16237;Parent=Msa0373490-mRNA-1
chr3_1 exon 72541578 72541671 72541578 ID=Msa0373490-mRNA-1:exon:16238;Parent=Msa0373490-mRNA-1
chr3_1 exon 72541758 72541840 72541758 ID=Msa0373490-mRNA-1:exon:16239;Parent=Msa0373490-mRNA-1
chr3_1 exon 72542127 72542585 72542127 ID=Msa0373490-mRNA-1:exon:16240;Parent=Msa0373490-mRNA-1
chr3_1 five_prime_UTR 72538018 72538218 72538018 ID=Msa0373490-mRNA-1:five_prime_utr;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72538219 72538384 72538219 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72538471 72538613 72538471 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72539428 72539481 72539428 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72540598 72540678 72540598 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72540752 72540797 72540752 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72540875 72540969 72540875 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72541059 72541091 72541059 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72541363 72541497 72541363 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72541578 72541671 72541578 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72541758 72541840 72541758 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 CDS 72542127 72542159 72542127 ID=Msa0373490-mRNA-1:cds;Parent=Msa0373490-mRNA-1
chr3_1 three_prime_UTR 72542160 72542585 72542160 ID=Msa0373490-mRNA-1:three_prime_utr;Parent=Msa0373490-mRNA-1
Gene Sequence

>Msa0373490

ATGGCTTCTCTTACCGGATCCAATTGCGTCGCTCTCCGTTCCGCAACTTTCGCCGCCGCCGGTAACCGTAAAATCACTCAGATCCGCCATTACTCTCCACTTCTCAATCATCTCCGTCCTGTTTCCGGTCTTCAAACTAGATCCAATACTTCGTTTAACTCAACCGGTGTGAGAGCACAGGTTGCTACACTGGCGGACGCGGCAACCGAAGCAGTTCAGAAAGTGGAATCGCCGGTTGTGATTGTTACCGGAGCTTCCAGAGGTATCGGAAAAGCAATTGCGTTAGCGTTAGGTAAAGCAGGTTGCAAGGTTTTGGTCAACTATGCAAGATCATCCAAGGAAGCTGAAGAGGTTTCCAAGGAGATTGAAGCACTCGGTGGGCAAGCTCTAACATATGGTGGAGATGTTTCTAATGAAGCTGATGTGAACTCTATGATTAAAACTGCAGTAGATGCTTGGGGAACCGTTGATGTATTGATAAACAATGCCGGAATAACCAGAGATGGTTTATTGATGAGAATGAAGAAGTCTCAGTGGCAGGAGGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTCCACACAGGCGGCTGCTAAGATTATGATGAAGAATAAGAAGGGAAGGATAATCAATATTTCATCAGTTGTTGGTTTGATTGGCAATGCTGGACAAGCCAATTATGCTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAATCTGTTGCAAAGGAATATTCTAGCAGAGGCATCACTGTTAATGCTGTTGCTCCAGGATTCATTGCATCTGACATGACTGCCAAGTTAGGAAATGACCTTGAGAAAAAGATTTTGGAGGCAATTCCATTAGGACGATATGGCCAACCAGAAGAAGTTGCTGGATTAGTGGAATTCTTGGCGCTTAGTCAAGCTGCCAGCTACATCACTGGGCAGGTTTTCACCATTGATGGAGGTATGGTGATGTAA
Protein sequence

>Msa0373490

MASLTGSNCVALRSATFAAAGNRKITQIRHYSPLLNHLRPVSGLQTRSNTSFNSTGVRAQVATLADAATEAVQKVESPVVIVTGASRGIGKAIALALGKAGCKVLVNYARSSKEAEEVSKEIEALGGQALTYGGDVSNEADVNSMIKTAVDAWGTVDVLINNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLSTQAAAKIMMKNKKGRIINISSVVGLIGNAGQANYAAAKAGVIGLTKSVAKEYSSRGITVNAVAPGFIASDMTAKLGNDLEKKILEAIPLGRYGQPEEVAGLVEFLALSQAASYITGQVFTIDGGMVM*