AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097270 MtrunA17_Chr5g0448681 72.642 954 135 14 28 866 51 993 0.0 1245
Msa0097270 MtrunA17_Chr1g0152721 81.115 556 66 4 253 771 1 554 0.0 887
Msa0097270 MtrunA17_Chr3g0144041 33.914 861 414 29 79 845 276 1075 2.61e-103 346
Msa0097270 MtrunA17_Chr3g0144041 59.420 69 25 1 28 96 47 112 2.37e-15 80.9
Msa0097270 MtrunA17_Chr1g0152711 80.000 65 13 0 28 92 52 116 7.54e-27 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097270 AT1G20760.1 35.412 946 428 27 28 845 48 938 7.49e-128 409
Msa0097270 AT1G21630.3 34.833 1045 427 38 28 865 50 1047 1.41e-116 383
Msa0097270 AT1G21630.1 35.632 957 393 32 28 793 50 974 2.93e-116 383
Msa0097270 AT1G21630.4 33.613 1074 430 40 28 865 50 1076 2.00e-106 356
Msa0097270 AT1G21630.2 34.381 986 395 35 28 793 50 1003 5.07e-106 355

Find 230 sgRNAs with CRISPR-Local

Find 608 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCCATGACTGGAATTT+TGG 0.071310 1_3:-3074319 None:intergenic
TTAGGCGACGCTACAAATTT+TGG 0.153429 1_3:-3078369 None:intergenic
GACTGATTTCCCCAAGTTAA+AGG 0.200006 1_3:-3074070 None:intergenic
ATCCATACCTTTGGGTTTCT+TGG 0.207896 1_3:-3078605 None:intergenic
CCCAATCAGCAGCTCCTTCT+TGG 0.235708 1_3:-3077033 None:intergenic
CTAGAAAATGATCTGATAAT+TGG 0.239234 1_3:+3081104 Msa0097270:exon
TCTGCCATTCTTCCTGTATC+TGG 0.243803 1_3:+3073425 Msa0097270:CDS
AAATCAAGAAGAATGTTATT+TGG 0.245195 1_3:-3074013 None:intergenic
GACAACTATTTCTTTAGTTC+TGG 0.248675 1_3:+3080734 Msa0097270:CDS
ATATATTTCTGAGTCATTCT+TGG 0.271188 1_3:-3073623 None:intergenic
CTTGGGTGTCATCTTGATTA+CGG 0.274367 1_3:-3078587 None:intergenic
GTGTCGAAGGTTCCCCAATT+AGG 0.276032 1_3:-3079511 None:intergenic
GACTCGGATCTCTTTGGCTC+TGG 0.276366 1_3:+3081049 Msa0097270:CDS
TACAGTAGTTACCTTCTTAT+CGG 0.283458 1_3:-3074412 None:intergenic
CCAGGCAAACTGTGCATATT+AGG 0.286799 1_3:-3073548 None:intergenic
GTCTCCTTCTTCCAAGGTTC+CGG 0.300179 1_3:+3072691 Msa0097270:CDS
TTGGGTGTCATCTTGATTAC+GGG 0.301965 1_3:-3078586 None:intergenic
ATGATGATATCGATTCAGTT+TGG 0.302385 1_3:+3079536 Msa0097270:CDS
AACTGAAACCACTGGTCTTC+AGG 0.302436 1_3:-3080811 None:intergenic
CTCTCTAATGAAGTCCTAAA+AGG 0.304432 1_3:-3081073 None:intergenic
TTTGATGACTCGGATCTCTT+TGG 0.311897 1_3:+3081043 Msa0097270:CDS
TCATTCTTGGCCACGGAGAT+TGG 0.312165 1_3:-3073610 None:intergenic
TCTGACTTATCATCACTCTT+AGG 0.312494 1_3:-3078387 None:intergenic
AACTACTTTCCTGCTGTTGC+TGG 0.321396 1_3:+3073107 Msa0097270:CDS
TCTGACATTCGAAAGACTTC+TGG 0.321969 1_3:+3078549 Msa0097270:CDS
GTCCAACAGGTGCGGATGGC+GGG 0.322403 1_3:-3073070 None:intergenic
TCCTCCGCCTTGCCTGCTTA+TGG 0.325960 1_3:+3073146 Msa0097270:CDS
TGTGCAACCGTGACAAGTTT+AGG 0.327560 1_3:-3072942 None:intergenic
TGATGATATCGATTCAGTTT+GGG 0.337637 1_3:+3079537 Msa0097270:CDS
GGCAAGGCGGAGGAAGTTGC+AGG 0.341202 1_3:-3073137 None:intergenic
CATTCTTGGCCACGGAGATT+GGG 0.342600 1_3:-3073609 None:intergenic
AATGAACTGTGCAAGAAGTA+TGG 0.345060 1_3:+3076013 Msa0097270:CDS
ACCAGTCTCTAGGCCTTTGC+GGG 0.349117 1_3:-3080880 None:intergenic
CCTCCCTGTGTCGCTCCATT+AGG 0.351212 1_3:-3073967 None:intergenic
TTGTATTGCATTGCACCTAA+TGG 0.351676 1_3:+3073952 Msa0097270:CDS
AATGCACTGTAGACTATTTC+AGG 0.357919 1_3:-3072984 None:intergenic
TCCATACCTTTGGGTTTCTT+GGG 0.362856 1_3:-3078604 None:intergenic
CAGCAAGTGATGACTGGATC+TGG 0.364695 1_3:+3074204 Msa0097270:CDS
CTCCAACGACCACACGTTAG+AGG 0.367571 1_3:+3073191 Msa0097270:CDS
CGATGGACATGTTTCTTAGT+TGG 0.371155 1_3:+3073702 Msa0097270:CDS
CGGACAGAATCAAAACTTAC+TGG 0.372848 1_3:-3080986 None:intergenic
TGGACTTTCAGTCAGATTGC+AGG 0.374518 1_3:+3073568 Msa0097270:CDS
GAACCAGCATGCCTCCATTC+AGG 0.374679 1_3:+3073523 Msa0097270:CDS
GCTTCAACTCAGGAGGAGTT+TGG 0.378393 1_3:+3073227 Msa0097270:CDS
CCTAATATGCACAGTTTGCC+TGG 0.383176 1_3:+3073548 Msa0097270:CDS
CAATTCTATCCTTGATGAAC+TGG 0.388302 1_3:+3075979 Msa0097270:CDS
GGTTGTGAACACAAAAGCTT+TGG 0.390128 1_3:+3078335 Msa0097270:CDS
TGCTGATTGGGATGAGGATT+GGG 0.390477 1_3:+3077045 Msa0097270:CDS
ATCTCCTTAGTCCTTTAACT+TGG 0.394574 1_3:+3074059 Msa0097270:CDS
GAAATATATGAATATATTCA+TGG 0.402113 1_3:+3073637 Msa0097270:CDS
CCTGCTTATGGCAACATGGC+TGG 0.406565 1_3:+3073158 Msa0097270:CDS
TCTCCTTAGTCCTTTAACTT+GGG 0.407046 1_3:+3074060 Msa0097270:CDS
GGCTTCCTCGGTTATCAACT+TGG 0.408259 1_3:-3075665 None:intergenic
TTTCTTTAGTTCTGGAGACC+TGG 0.408705 1_3:+3080742 Msa0097270:CDS
TGATTTGGAAATGGTCCAAC+AGG 0.410429 1_3:-3073083 None:intergenic
ACATTAGTAGAGCTACCTTT+TGG 0.412296 1_3:+3076055 Msa0097270:CDS
CCAAGAAGGAGCTGCTGATT+GGG 0.414207 1_3:+3077033 Msa0097270:CDS
CTCTGGTTCCCTCCAGATAC+AGG 0.426137 1_3:-3073437 None:intergenic
GAGGGAACCAGAGTTCTATT+AGG 0.427729 1_3:+3073447 Msa0097270:CDS
TGGGACAAGCTTGAAGATAA+AGG 0.428074 1_3:+3077064 Msa0097270:CDS
CTGCTGATTGGGATGAGGAT+TGG 0.428599 1_3:+3077044 Msa0097270:CDS
TTCTGAGGTCCTTCGTCAGA+TGG 0.429930 1_3:-3074282 None:intergenic
AACCAGTCTCTAGGCCTTTG+CGG 0.430545 1_3:-3080881 None:intergenic
CTTGGTGGCCGACCTGCAGT+AGG 0.432092 1_3:-3074243 None:intergenic
TCCAAGAAGGAGCTGCTGAT+TGG 0.435562 1_3:+3077032 Msa0097270:CDS
TGTTATTGGACCTGTATGTC+AGG 0.437076 1_3:-3075694 None:intergenic
ACTCGGATCTCTTTGGCTCT+GGG 0.438429 1_3:+3081050 Msa0097270:CDS
GATGGACATGTTTCTTAGTT+GGG 0.441697 1_3:+3073703 Msa0097270:CDS
TTCCCCAAGTTAAAGGACTA+AGG 0.443179 1_3:-3074063 None:intergenic
GAAGATAAATATAAGCAAGT+TGG 0.450494 1_3:+3075631 Msa0097270:CDS
TAATGTATCTTTACCTGCTC+GGG 0.450789 1_3:+3080952 Msa0097270:CDS
ATCCTCGTGGAGAAGAATCT+TGG 0.453009 1_3:-3073397 None:intergenic
TGTGATTGTGTAGGCCATGT+GGG 0.453274 1_3:-3073287 None:intergenic
CTTGCATACCTCTTTGCTAC+TGG 0.456702 1_3:-3079569 None:intergenic
CTCCTTAGTCCTTTAACTTG+GGG 0.457594 1_3:+3074061 Msa0097270:CDS
TGGGAAAATCACAAGGGAAC+AGG 0.457949 1_3:+3073679 Msa0097270:CDS
TTCTTTAGTTCTGGAGACCT+GGG 0.461210 1_3:+3080743 Msa0097270:CDS
CAACATCAGCAAGTGATGAC+TGG 0.461510 1_3:+3074198 Msa0097270:CDS
AAGAATGTTATTTGGAAGTA+CGG 0.461568 1_3:-3074005 None:intergenic
CCAACAGGTGCGGATGGCGG+GGG 0.462189 1_3:-3073068 None:intergenic
AGCAAGTGATGACTGGATCT+GGG 0.467888 1_3:+3074205 Msa0097270:CDS
GAGCTGAAAAGTGGGGTGCT+TGG 0.470554 1_3:-3080848 None:intergenic
GTCAGGGAATGTGGCTTCCT+CGG 0.471464 1_3:-3075677 None:intergenic
ATGTTATTTGGAAGTACGGC+TGG 0.471488 1_3:-3074001 None:intergenic
TTAACTTGGGGAAATCAGTC+AGG 0.472403 1_3:+3074073 Msa0097270:CDS
CGTGGAGAAGAATCTTGGTT+GGG 0.472806 1_3:-3073392 None:intergenic
GGTGGTTGTGCTTCCCGAGC+AGG 0.473964 1_3:-3080965 None:intergenic
GGAGGGACAGCAGCCGTCCT+TGG 0.475788 1_3:-3074261 None:intergenic
TCCAACAGGTGCGGATGGCG+GGG 0.476045 1_3:-3073069 None:intergenic
GAGAGAGAGCTGGATGGAGC+TGG 0.476810 1_3:+3080710 Msa0097270:CDS
AGCCACATTCCCTGACATAC+AGG 0.483110 1_3:+3075684 Msa0097270:CDS
ATGAGATGCTTCTCCATGAC+TGG 0.483738 1_3:-3074327 None:intergenic
GGTCCAACAGGTGCGGATGG+CGG 0.486394 1_3:-3073071 None:intergenic
GGGACAGCAGCCGTCCTTGG+TGG 0.487192 1_3:-3074258 None:intergenic
AGCAACAGAAGCCGATAAGA+AGG 0.488269 1_3:+3074401 Msa0097270:CDS
AGATTGCAGGATTCTGCGTC+AGG 0.488541 1_3:+3073581 Msa0097270:CDS
GGGAAATTGATCTGAGGAGC+AGG 0.488902 1_3:-3073032 None:intergenic
AACTGCTTGAGCTGAAAAGT+GGG 0.491275 1_3:-3080856 None:intergenic
CTGCTTGCAAATGGACGGTT+AGG 0.491492 1_3:-3078492 None:intergenic
TACTATCGGAAGTCCACATA+GGG 0.492381 1_3:+3078515 Msa0097270:CDS
CCCCGCAAAGGCCTAGAGAC+TGG 0.496157 1_3:+3080879 Msa0097270:CDS
CCAGCCATGTTGCCATAAGC+AGG 0.496487 1_3:-3073158 None:intergenic
CCCTCCAGATACAGGAAGAA+TGG 0.497277 1_3:-3073429 None:intergenic
TCAAGAGTGTATTCTTTGAC+AGG 0.499945 1_3:-3078270 None:intergenic
CCGATAGTACTGCTTGCAAA+TGG 0.504423 1_3:-3078501 None:intergenic
CATGCTATCATTATCTTGAT+CGG 0.505568 1_3:-3073912 None:intergenic
GAACTGCTTGAGCTGAAAAG+TGG 0.506973 1_3:-3080857 None:intergenic
AAGTAGACAAGGATAGAGAT+GGG 0.507931 1_3:+3073660 Msa0097270:CDS
ACGACCGTCGCAATCCAAAT+CGG 0.511349 1_3:-3072650 None:intergenic
TTCTGAGTCATTCTTGGCCA+CGG 0.511538 1_3:-3073617 None:intergenic
TTCCTCTAACGTGTGGTCGT+TGG 0.511906 1_3:-3073193 None:intergenic
GATTTCTGCTGCTTGTTCTG+AGG 0.514331 1_3:-3074297 None:intergenic
ATAATGTATCTTTACCTGCT+CGG 0.515163 1_3:+3080951 Msa0097270:CDS
TGCACCTAATGGAGCGACAC+AGG 0.516922 1_3:+3073963 Msa0097270:CDS
CAATATCCTACCTCTGTCAA+TGG 0.520393 1_3:+3073308 Msa0097270:CDS
AGTTAAAGGACTAAGGAGAT+TGG 0.520793 1_3:-3074056 None:intergenic
GGGCGAAGTCCAGCAACAGC+AGG 0.521376 1_3:-3073116 None:intergenic
GCAGCTCCTTCTTGGATACC+AGG 0.522331 1_3:-3077025 None:intergenic
CTTCTTGATTTACTGACTAG+TGG 0.522839 1_3:+3074025 Msa0097270:CDS
TAGTCCTACTGCTTCAACTC+AGG 0.522846 1_3:+3073217 Msa0097270:CDS
ATAGTCTACAGTGCATTGTA+TGG 0.523125 1_3:+3072990 Msa0097270:CDS
GAAGCCGTCTCCTTCTTCCA+AGG 0.523721 1_3:+3072685 Msa0097270:CDS
AGGTTCTAGCGCCTTTGTTG+AGG 0.528910 1_3:+3074516 Msa0097270:CDS
GAGATTTCACCAGTTCATCA+AGG 0.530082 1_3:-3075988 None:intergenic
GAAATCCAAAATTCCAGTCA+TGG 0.530741 1_3:+3074314 Msa0097270:CDS
GAAGTAGACAAGGATAGAGA+TGG 0.531578 1_3:+3073659 Msa0097270:CDS
AAAGGACTAAGGAGATTGGC+AGG 0.533429 1_3:-3074052 None:intergenic
GTGCATATTAGGTGCCTGAA+TGG 0.533486 1_3:-3073537 None:intergenic
GTGTTCTCCAACCAGTCTCT+AGG 0.536289 1_3:-3080890 None:intergenic
CTTGCCTGCTTATGGCAACA+TGG 0.540907 1_3:+3073154 Msa0097270:CDS
TGCAATCTGACTGAAAGTCC+AGG 0.547653 1_3:-3073566 None:intergenic
GTGATTGTGTAGGCCATGTG+GGG 0.548388 1_3:-3073286 None:intergenic
ATTCTTGGCCACGGAGATTG+GGG 0.549173 1_3:-3073608 None:intergenic
GTGCCTGAATGGAGGCATGC+TGG 0.550485 1_3:-3073526 None:intergenic
GTTGGGGCAAACCGGAACCT+TGG 0.552590 1_3:-3072702 None:intergenic
CTGCAAAGAATCAGAGGTGG+TGG 0.554201 1_3:-3073471 None:intergenic
GCCATTCTTCCTGTATCTGG+AGG 0.554937 1_3:+3073428 Msa0097270:CDS
TGAGGTCCTTCGTCAGATGG+AGG 0.555421 1_3:-3074279 None:intergenic
TGATTGTGTAGGCCATGTGG+GGG 0.556489 1_3:-3073285 None:intergenic
CATGTTGCCATAAGCAGGCA+AGG 0.556940 1_3:-3073153 None:intergenic
AATCACAAGGGAACAGGCGA+TGG 0.560183 1_3:+3073685 Msa0097270:CDS
TTGGTTGGGCTGAGATGAGG+TGG 0.560528 1_3:-3073378 None:intergenic
AATGGTCCAACAGGTGCGGA+TGG 0.560586 1_3:-3073074 None:intergenic
TGGTGGTCCTAATAGAACTC+TGG 0.561930 1_3:-3073454 None:intergenic
GATGATATCGATTCAGTTTG+GGG 0.565888 1_3:+3079538 Msa0097270:CDS
GATATCATCATTTGTGTCGA+AGG 0.566001 1_3:-3079524 None:intergenic
GCAAAGGCCTAGAGACTGGT+TGG 0.566136 1_3:+3080883 Msa0097270:CDS
TATGGCAACATGGCTGGAGG+AGG 0.567647 1_3:+3073164 Msa0097270:CDS
AGGTAGCTCTACTAATGTCG+TGG 0.568076 1_3:-3076050 None:intergenic
TTGGTGGCCGACCTGCAGTA+GGG 0.569666 1_3:-3074242 None:intergenic
ATCATCAAAACTGAAACCAC+TGG 0.572900 1_3:-3080819 None:intergenic
CGACATGTCAACCCTACTGC+AGG 0.573256 1_3:+3074231 Msa0097270:CDS
TGCAGGTCGGCCACCAAGGA+CGG 0.573659 1_3:+3074248 Msa0097270:CDS
TATCATTATCTTGATCGGAT+AGG 0.573737 1_3:-3073907 None:intergenic
CCATTTGCAAGCAGTACTAT+CGG 0.574980 1_3:+3078501 Msa0097270:CDS
GCCATAAGCAGGCAAGGCGG+AGG 0.576502 1_3:-3073147 None:intergenic
AGGAGCTGCTGATTGGGATG+AGG 0.578287 1_3:+3077039 Msa0097270:CDS
ACAATACCATTGACAGAGGT+AGG 0.578660 1_3:-3073314 None:intergenic
CAAACCGGAACCTTGGAAGA+AGG 0.579844 1_3:-3072695 None:intergenic
CCATTCTTCCTGTATCTGGA+GGG 0.582597 1_3:+3073429 Msa0097270:CDS
TCTTGCATATGCAGTGATCA+TGG 0.583093 1_3:+3079445 Msa0097270:intron
CTACTGCAGGTCGGCCACCA+AGG 0.583234 1_3:+3074244 Msa0097270:CDS
AATCCTTTAGGCTGGCAACC+TGG 0.583706 1_3:+3077007 Msa0097270:intron
GCTCAAGCAGTTCCCCGCAA+AGG 0.583752 1_3:+3080867 Msa0097270:CDS
GATCTCTTCCTGAAGACCAG+TGG 0.584662 1_3:+3080803 Msa0097270:CDS
GAATGAACAAAGCCCCTATG+TGG 0.584763 1_3:-3078528 None:intergenic
TTACAGGAGAGAGAGCTGGA+TGG 0.585980 1_3:+3080704 Msa0097270:intron
GGTAGCTCTACTAATGTCGT+GGG 0.588321 1_3:-3076049 None:intergenic
TCGTGGAGAAGAATCTTGGT+TGG 0.589465 1_3:-3073393 None:intergenic
GACCTGTATGTCAGGGAATG+TGG 0.595549 1_3:-3075686 None:intergenic
AAAACATCTTCACCACAGGC+TGG 0.596872 1_3:+3080779 Msa0097270:CDS
CATTAAAACATCTTCACCAC+AGG 0.599364 1_3:+3080775 Msa0097270:CDS
TTGTGATTGTGTAGGCCATG+TGG 0.600604 1_3:-3073288 None:intergenic
CAATGCACCTAAACTTGTCA+CGG 0.600819 1_3:+3072935 Msa0097270:CDS
GAGGTCCTTCGTCAGATGGA+GGG 0.603769 1_3:-3074278 None:intergenic
CTAACGTGTGGTCGTTGGAG+AGG 0.605972 1_3:-3073188 None:intergenic
CGTGCCGATTTGGATTGCGA+CGG 0.608028 1_3:+3072646 Msa0097270:CDS
TGGCAACCTGGTATCCAAGA+AGG 0.611414 1_3:+3077019 Msa0097270:CDS
GCACCTAATGGAGCGACACA+GGG 0.613982 1_3:+3073964 Msa0097270:CDS
GTAGGATATTGTGATTGTGT+AGG 0.618275 1_3:-3073296 None:intergenic
GTACTATCGGAAGTCCACAT+AGG 0.618358 1_3:+3078514 Msa0097270:CDS
GTTATTGGACCTGTATGTCA+GGG 0.619557 1_3:-3075693 None:intergenic
TCCTACTGCTTCAACTCAGG+AGG 0.619831 1_3:+3073220 Msa0097270:CDS
TAGAATTGATTTGATCAGCA+CGG 0.625354 1_3:-3075964 None:intergenic
GATTGCGACGGTCGTATCAG+CGG 0.625790 1_3:+3072658 Msa0097270:CDS
ACTACAAATGAACAAGGAGT+AGG 0.626367 1_3:+3078420 Msa0097270:CDS
TAGTACTGCTTGCAAATGGA+CGG 0.626855 1_3:-3078497 None:intergenic
GGAGGTTCAATCCTCAACAA+AGG 0.628658 1_3:-3074527 None:intergenic
TGAGCTCTGCAAAGAATCAG+AGG 0.631063 1_3:-3073477 None:intergenic
CGCAATCCAAATCGGCACGA+CGG 0.634413 1_3:-3072642 None:intergenic
TGGAAATGGTCCAACAGGTG+CGG 0.635643 1_3:-3073078 None:intergenic
GCAAGTGATGACTGGATCTG+GGG 0.637744 1_3:+3074206 Msa0097270:CDS
ATAGAGATGGGAAAATCACA+AGG 0.644134 1_3:+3073672 Msa0097270:CDS
GCTTATGGCAACATGGCTGG+AGG 0.644176 1_3:+3073161 Msa0097270:CDS
GCAAGGCGGAGGAAGTTGCA+GGG 0.644535 1_3:-3073136 None:intergenic
TGGGTGTCATCTTGATTACG+GGG 0.644709 1_3:-3078585 None:intergenic
TATATTCATGGAAGTAGACA+AGG 0.648231 1_3:+3073649 Msa0097270:CDS
CTAATGGAGCGACACAGGGA+GGG 0.649839 1_3:+3073968 Msa0097270:CDS
TCCAAAACAAAAGCAACCAA+AGG 0.650907 1_3:+3078314 Msa0097270:CDS
GCTGTCCCTCCATCTGACGA+AGG 0.652200 1_3:+3074273 Msa0097270:CDS
CTTAGTTGGGCATTACCAAG+AGG 0.652440 1_3:+3073716 Msa0097270:CDS
ATCTTGGTTGGGCTGAGATG+AGG 0.653612 1_3:-3073381 None:intergenic
TGTAGACTATTTCAGGAGTG+AGG 0.661834 1_3:-3072977 None:intergenic
TCTCAGACTACAAATGAACA+AGG 0.664499 1_3:+3078414 Msa0097270:CDS
TCCTCCTGAGTTGAAGCAGT+AGG 0.666830 1_3:-3073221 None:intergenic
ATTCAATGCCAGTAGCAAAG+AGG 0.669713 1_3:+3079561 Msa0097270:CDS
AATGAACAAGGAGTAGGCAA+CGG 0.671842 1_3:+3078426 Msa0097270:CDS
GGAACCTTGGAAGAAGGAGA+CGG 0.672275 1_3:-3072689 None:intergenic
GATCAAAATTCGCACTACTG+CGG 0.674396 1_3:-3081006 None:intergenic
GATTGTGTAGGCCATGTGGG+GGG 0.676472 1_3:-3073284 None:intergenic
CAGGTCAGCCCCAATCTCCG+TGG 0.678816 1_3:+3073600 Msa0097270:CDS
GTGGCAGGGAAATTGATCTG+AGG 0.681520 1_3:-3073038 None:intergenic
AGGAAGAGATCACCAGCCTG+TGG 0.681624 1_3:-3080791 None:intergenic
GGACTAGTTCCTCTAACGTG+TGG 0.682564 1_3:-3073200 None:intergenic
CATATTAGGTGCCTGAATGG+AGG 0.684163 1_3:-3073534 None:intergenic
CCTAATGGAGCGACACAGGG+AGG 0.684554 1_3:+3073967 Msa0097270:CDS
ATGACACCCAAGAAACCCAA+AGG 0.686402 1_3:+3078598 Msa0097270:CDS
ATCATCCAAGTTGATAACCG+AGG 0.694322 1_3:+3075660 Msa0097270:CDS
ACAGAATCAAAACTTACTGG+TGG 0.696501 1_3:-3080983 None:intergenic
AGCAACAATACCATTGACAG+AGG 0.702416 1_3:-3073318 None:intergenic
ATGTCAACCCTACTGCAGGT+CGG 0.704032 1_3:+3074235 Msa0097270:CDS
ATGGCAGATGAAAATCCTCG+TGG 0.714682 1_3:-3073410 None:intergenic
TAGAGATGGGAAAATCACAA+GGG 0.716741 1_3:+3073673 Msa0097270:CDS
AACCAAGATTCTTCTCCACG+AGG 0.717979 1_3:+3073395 Msa0097270:CDS
CCAGTCTCTAGGCCTTTGCG+GGG 0.721359 1_3:-3080879 None:intergenic
ACTGCTTGAGCTGAAAAGTG+GGG 0.724007 1_3:-3080855 None:intergenic
GCTCTGCAAAGAATCAGAGG+TGG 0.735278 1_3:-3073474 None:intergenic
ACTATCGGAAGTCCACATAG+GGG 0.740160 1_3:+3078516 Msa0097270:CDS
GTTGCCATAAGCAGGCAAGG+CGG 0.769229 1_3:-3073150 None:intergenic
TGCATATGCAGTGATCATGG+TGG 0.802888 1_3:+3079448 Msa0097270:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATAAAAAATATAT+TGG - chr1_3:3076910-3076929 None:intergenic 0.0%
!!! AATCACTTAATTTTATTATT+GGG + chr1_3:3074483-3074502 Msa0097270:intron 10.0%
!! AAAAAGAAAATAAAAGAAAA+AGG - chr1_3:3075415-3075434 None:intergenic 10.0%
!! AAAAAAATTGAATTATATCT+AGG + chr1_3:3075813-3075832 Msa0097270:intron 10.0%
!! AAAAAATTGAATTATATCTA+GGG + chr1_3:3075814-3075833 Msa0097270:intron 10.0%
!! AATATAAAAAATATATTGGA+GGG - chr1_3:3076906-3076925 None:intergenic 10.0%
!! AAATATAAAAAATATATTGG+AGG - chr1_3:3076907-3076926 None:intergenic 10.0%
!!! TTTTTTATTTTTTTTGGTAT+TGG + chr1_3:3079381-3079400 Msa0097270:intron 10.0%
!!! GATATATTATTGTAATATTT+TGG + chr1_3:3079737-3079756 Msa0097270:intron 10.0%
!! GAAATATATGAATATATTCA+TGG + chr1_3:3073637-3073656 Msa0097270:CDS 15.0%
!! TAAAATTAAGTGATTGAATT+TGG - chr1_3:3074478-3074497 None:intergenic 15.0%
!!! CAATCACTTAATTTTATTAT+TGG + chr1_3:3074482-3074501 Msa0097270:intron 15.0%
!!! ATCACTTAATTTTATTATTG+GGG + chr1_3:3074484-3074503 Msa0097270:intron 15.0%
!! TAGTAATTGAAATGTAATTT+GGG + chr1_3:3075101-3075120 Msa0097270:intron 15.0%
!!! TAAGTCTTAACTTTTATAAT+TGG + chr1_3:3075565-3075584 Msa0097270:intron 15.0%
!!! CATTATTTTATTGTATGTAT+AGG + chr1_3:3075789-3075808 Msa0097270:intron 15.0%
!!! ATAAATTTGAAATTACCAAA+AGG - chr1_3:3076073-3076092 None:intergenic 15.0%
!!! TTATCATATTTTGCTTTAAA+TGG - chr1_3:3076468-3076487 None:intergenic 15.0%
!!! TTTAAAGCAAAATATGATAA+TGG + chr1_3:3076468-3076487 Msa0097270:intron 15.0%
!! ATATAAAAAATATATTGGAG+GGG - chr1_3:3076905-3076924 None:intergenic 15.0%
!! AGATTTATTATAGAACATTA+TGG + chr1_3:3077453-3077472 Msa0097270:intron 15.0%
!! GAAATGATATTATATGATAT+TGG + chr1_3:3078113-3078132 Msa0097270:intron 15.0%
!!! ACTGAAATTTCTTTATTTTA+TGG + chr1_3:3078156-3078175 Msa0097270:intron 15.0%
!!! GTTATTTATTTGTTTGAAAT+TGG + chr1_3:3079327-3079346 Msa0097270:intron 15.0%
!!! GCTTCATTTTTTATTTTTTT+TGG + chr1_3:3079375-3079394 Msa0097270:intron 15.0%
!!! AATTTGTTTATAGTTTTTAC+AGG + chr1_3:3080688-3080707 Msa0097270:intron 15.0%
!! AAATCAAGAAGAATGTTATT+TGG - chr1_3:3074016-3074035 None:intergenic 20.0%
!!! TTTTAAAGTTGATTAGTTTG+AGG + chr1_3:3074847-3074866 Msa0097270:intron 20.0%
!! CTAGTAATTGAAATGTAATT+TGG + chr1_3:3075100-3075119 Msa0097270:intron 20.0%
!!! ATTTGATTTATTGAGCTTTA+AGG + chr1_3:3075197-3075216 Msa0097270:intron 20.0%
!!! TTTATGTATTTTTCTCTTCT+AGG - chr1_3:3075344-3075363 None:intergenic 20.0%
!! CAAAAAATCCTCAAAATTTA+TGG - chr1_3:3077182-3077201 None:intergenic 20.0%
!!! TGGATAATTATCATTTTATC+TGG + chr1_3:3077236-3077255 Msa0097270:intron 20.0%
!!! GGATAATTATCATTTTATCT+GGG + chr1_3:3077237-3077256 Msa0097270:intron 20.0%
!! TATCACTACTCTTATAATTT+AGG + chr1_3:3077561-3077580 Msa0097270:intron 20.0%
!! TCAATTGACATATACATATA+AGG + chr1_3:3077764-3077783 Msa0097270:intron 20.0%
!!! GATCATTTTGAATAGTTATA+TGG + chr1_3:3078083-3078102 Msa0097270:intron 20.0%
!! TTTGAATAGTTATATGGTTT+AGG + chr1_3:3078089-3078108 Msa0097270:intron 20.0%
!! TATTGGTGAGATTAAAATTA+TGG + chr1_3:3078130-3078149 Msa0097270:intron 20.0%
!! ATTGGTGAGATTAAAATTAT+GGG + chr1_3:3078131-3078150 Msa0097270:intron 20.0%
!! GAAATATATGGATAATTTCT+TGG + chr1_3:3078209-3078228 Msa0097270:intron 20.0%
!!! TTTTTAATAAAAGCGATGAT+GGG + chr1_3:3078454-3078473 Msa0097270:CDS 20.0%
!! AAAATGGTGATTATTTGTAT+TGG + chr1_3:3078750-3078769 Msa0097270:intron 20.0%
!!! AGTTTTTTACAGTACAAAAA+TGG + chr1_3:3078964-3078983 Msa0097270:intron 20.0%
!!! GTTCGATTTATTTGTATTTT+GGG - chr1_3:3079002-3079021 None:intergenic 20.0%
!!! ATTTTTGTTGACAGAAAAAA+TGG - chr1_3:3079069-3079088 None:intergenic 20.0%
!!! TATTTGTTTGAAATTGGTTT+TGG + chr1_3:3079333-3079352 Msa0097270:intron 20.0%
!! ATAAAAAATGAAGCATATGT+TGG - chr1_3:3079369-3079388 None:intergenic 20.0%
!! GATCTTGTAAAATAATTGTT+TGG + chr1_3:3079415-3079434 Msa0097270:intron 20.0%
!!! CATATTATCATTTTTCTGTT+AGG - chr1_3:3079862-3079881 None:intergenic 20.0%
!! AAAAGGGAAAAAAAAAAACA+CGG - chr1_3:3080377-3080396 None:intergenic 20.0%
!! AAGAATTAATAGCTGTTATA+AGG + chr1_3:3080588-3080607 Msa0097270:intron 20.0%
! GAAGTTAAGATTGATTAGTA+AGG - chr1_3:3072756-3072775 None:intergenic 25.0%
! AAAAATCAAAGTGGTTTCTT+AGG + chr1_3:3072897-3072916 Msa0097270:CDS 25.0%
!!! AAGTAGTTTTGATTTGGAAA+TGG - chr1_3:3073095-3073114 None:intergenic 25.0%
!! ATATATTTCTGAGTCATTCT+TGG - chr1_3:3073626-3073645 None:intergenic 25.0%
!! AAGAATGTTATTTGGAAGTA+CGG - chr1_3:3074008-3074027 None:intergenic 25.0%
! GATTGAATTTGGCATATTTA+AGG - chr1_3:3074467-3074486 None:intergenic 25.0%
!! TTTTATTATTGGGGTACATT+AGG + chr1_3:3074493-3074512 Msa0097270:intron 25.0%
!!! AAGTCTTTTAAGATTGAGTA+CGG - chr1_3:3074567-3074586 None:intergenic 25.0%
! TACTCAATCTTAAAAGACTT+AGG + chr1_3:3074567-3074586 Msa0097270:intron 25.0%
! ATTTACATGTGTTTCCTAAA+CGG + chr1_3:3074711-3074730 Msa0097270:intron 25.0%
! AAACCAATCAAAGTAGTATT+TGG - chr1_3:3074761-3074780 None:intergenic 25.0%
!! TATTTGGTTTCATTAGTTTG+AGG + chr1_3:3074896-3074915 Msa0097270:intron 25.0%
!! AAGTTGTATTTGGTTTCAAT+AGG + chr1_3:3074939-3074958 Msa0097270:intron 25.0%
! TTGTATCTATAAAGATTGCA+TGG + chr1_3:3075032-3075051 Msa0097270:intron 25.0%
! TTATTGTACTTGTGAAAGAA+TGG + chr1_3:3075148-3075167 Msa0097270:intron 25.0%
! ATAGAAGAAATCTATTTCGT+AGG - chr1_3:3075269-3075288 None:intergenic 25.0%
! GTATTTATACAATAGAATCG+TGG + chr1_3:3075315-3075334 Msa0097270:intron 25.0%
! TTAACGTTATAGGTCTAATA+AGG - chr1_3:3075548-3075567 None:intergenic 25.0%
! AAGTTAAGACTTAACGTTAT+AGG - chr1_3:3075558-3075577 None:intergenic 25.0%
! GAAGATAAATATAAGCAAGT+TGG + chr1_3:3075631-3075650 Msa0097270:CDS 25.0%
! AAGAATAAGCCATATGTTAT+TGG - chr1_3:3075711-3075730 None:intergenic 25.0%
! TATGGAAAAAGAAATCATGA+TGG - chr1_3:3075915-3075934 None:intergenic 25.0%
! GTATTTGGCTATATTAGATA+TGG - chr1_3:3075933-3075952 None:intergenic 25.0%
!! TATAGCCAAATACAATTTTC+AGG + chr1_3:3075940-3075959 Msa0097270:intron 25.0%
!!! TGTTGTTGATATTTAGTTTG+AGG + chr1_3:3076195-3076214 Msa0097270:intron 25.0%
!! TTATCACAAATGTTTTCTCA+TGG + chr1_3:3076424-3076443 Msa0097270:intron 25.0%
! TTGACACTAAATTAGCTATA+TGG + chr1_3:3076498-3076517 Msa0097270:intron 25.0%
! CAAATGTTGTATTAGTGATT+TGG + chr1_3:3076553-3076572 Msa0097270:intron 25.0%
! TGTATGAAAAGATATGAAAC+TGG + chr1_3:3076577-3076596 Msa0097270:intron 25.0%
!!! ACTCTTCATTTTTTGCTAAA+TGG + chr1_3:3076731-3076750 Msa0097270:intron 25.0%
! AAAACAAGCAAAATAAGAGA+AGG - chr1_3:3076816-3076835 None:intergenic 25.0%
!!! TTTTGAGGATTTTTTGCAAA+AGG + chr1_3:3077186-3077205 Msa0097270:intron 25.0%
! TTGATATATGACTCTCATAT+TGG + chr1_3:3077267-3077286 Msa0097270:intron 25.0%
! ACATATAAGGAAACAATATG+TGG + chr1_3:3077777-3077796 Msa0097270:intron 25.0%
! ATAGAAGACTAAGATCTTTA+AGG + chr1_3:3077869-3077888 Msa0097270:intron 25.0%
! TGGATAATGTTGGAAATATA+TGG + chr1_3:3078197-3078216 Msa0097270:intron 25.0%
!! GTTTTTAATAAAAGCGATGA+TGG + chr1_3:3078453-3078472 Msa0097270:CDS 25.0%
! ATCTTAAAATCCATACCTTT+GGG - chr1_3:3078616-3078635 None:intergenic 25.0%
! AATCTTAAAATCCATACCTT+TGG - chr1_3:3078617-3078636 None:intergenic 25.0%
! ATGATTGTCATTGCATAAAA+TGG + chr1_3:3078734-3078753 Msa0097270:intron 25.0%
! GTGATTATTTGTATTGGAAA+TGG + chr1_3:3078756-3078775 Msa0097270:intron 25.0%
!! TCTTTTTATCACTAAACTGT+TGG - chr1_3:3078845-3078864 None:intergenic 25.0%
! GAGATAAATGTCATAATCAA+AGG + chr1_3:3078863-3078882 Msa0097270:intron 25.0%
!! TTCACTTTCTTCATTTTCAT+GGG + chr1_3:3078908-3078927 Msa0097270:intron 25.0%
!! GGTTCGATTTATTTGTATTT+TGG - chr1_3:3079003-3079022 None:intergenic 25.0%
! TCTGTCAACAAAAATAGTAA+AGG + chr1_3:3079074-3079093 Msa0097270:intron 25.0%
! ATGCATTAAAAACTCTTTGA+CGG + chr1_3:3079179-3079198 Msa0097270:intron 25.0%
! TGTTATTGTTATGCATGATA+AGG + chr1_3:3079275-3079294 Msa0097270:intron 25.0%
!! AGTTTTTGATGAACCTAATT+GGG + chr1_3:3079498-3079517 Msa0097270:CDS 25.0%
!! AGTAAAATCCTTTCTTTTGA+AGG + chr1_3:3079616-3079635 Msa0097270:intron 25.0%
!! AGTCTTATCATATTGAGTAA+TGG - chr1_3:3079839-3079858 None:intergenic 25.0%
! CATATGTGGAATTGAATATT+GGG - chr1_3:3080424-3080443 None:intergenic 25.0%
!! CAATTATCAGATCATTTTCT+AGG - chr1_3:3081106-3081125 None:intergenic 25.0%
! CTAGAAAATGATCTGATAAT+TGG + chr1_3:3081104-3081123 Msa0097270:exon 25.0%
TTCGCAAACAAAAATCAAAG+TGG + chr1_3:3072888-3072907 Msa0097270:CDS 30.0%
TATATTCATGGAAGTAGACA+AGG + chr1_3:3073649-3073668 Msa0097270:CDS 30.0%
GAAGTAGATAATATACCTCT+TGG - chr1_3:3073734-3073753 None:intergenic 30.0%
! CTACTTCATTTCCTTTTGTT+TGG + chr1_3:3073747-3073766 Msa0097270:intron 30.0%
! CAGAGCAAAATTTTTAACCA+TGG - chr1_3:3073774-3073793 None:intergenic 30.0%
AAATGATCAGTGAATTAGCT+AGG - chr1_3:3073837-3073856 None:intergenic 30.0%
! TCTCTGGAAAACATAAAACA+TGG - chr1_3:3073868-3073887 None:intergenic 30.0%
TATCATTATCTTGATCGGAT+AGG - chr1_3:3073910-3073929 None:intergenic 30.0%
CATGCTATCATTATCTTGAT+CGG - chr1_3:3073915-3073934 None:intergenic 30.0%
!!! AACTAACTACCATGCTTTTT+TGG + chr1_3:3074108-3074127 Msa0097270:intron 30.0%
!!! ACTAACTACCATGCTTTTTT+GGG + chr1_3:3074109-3074128 Msa0097270:intron 30.0%
CAAAATAACCCAAAAAAGCA+TGG - chr1_3:3074120-3074139 None:intergenic 30.0%
!!! CATGCTTTTTTGGGTTATTT+TGG + chr1_3:3074118-3074137 Msa0097270:intron 30.0%
TACAGTAGTTACCTTCTTAT+CGG - chr1_3:3074415-3074434 None:intergenic 30.0%
AATAAACATGTCATCCATTG+AGG - chr1_3:3074627-3074646 None:intergenic 30.0%
ATAGATAAGCAAAACCGTTT+AGG - chr1_3:3074728-3074747 None:intergenic 30.0%
! AAACGGTTTTGCTTATCTAT+TGG + chr1_3:3074728-3074747 Msa0097270:intron 30.0%
! TCATAGTAAGCAACTCTTTT+TGG + chr1_3:3074787-3074806 Msa0097270:intron 30.0%
! CATAGTAAGCAACTCTTTTT+GGG + chr1_3:3074788-3074807 Msa0097270:intron 30.0%
! ATAGTAAGCAACTCTTTTTG+GGG + chr1_3:3074789-3074808 Msa0097270:intron 30.0%
!! AGTTGATTAGTTTGAGGATA+TGG + chr1_3:3074853-3074872 Msa0097270:intron 30.0%
! GTTTCATTAGTTTGAGGATA+TGG + chr1_3:3074902-3074921 Msa0097270:intron 30.0%
ACATCAGTGTAAGTTGTATT+TGG + chr1_3:3074929-3074948 Msa0097270:intron 30.0%
! TCTTGTATATAACCTTTTGC+AGG - chr1_3:3075460-3075479 None:intergenic 30.0%
TGATATAGCGATGCAAAATT+CGG - chr1_3:3075769-3075788 None:intergenic 30.0%
!! TAGAATTGATTTGATCAGCA+CGG - chr1_3:3075967-3075986 None:intergenic 30.0%
GTAAATAGAAAACGCTTGAA+AGG - chr1_3:3076107-3076126 None:intergenic 30.0%
! AAGACTTGATAACACTTGAA+AGG - chr1_3:3076134-3076153 None:intergenic 30.0%
CTATATGGTTCTTCGTAATA+GGG + chr1_3:3076513-3076532 Msa0097270:intron 30.0%
! GCAGCAAAAGGATTTTTATT+TGG - chr1_3:3076648-3076667 None:intergenic 30.0%
AAAATGTCAAATGCAGCAAA+AGG - chr1_3:3076660-3076679 None:intergenic 30.0%
TACATCAAAGCAAAGAGAAA+TGG - chr1_3:3076851-3076870 None:intergenic 30.0%
! CTAAAGGATTAATTTGAGTG+AGG - chr1_3:3076997-3077016 None:intergenic 30.0%
CTCACTCAAATTAATCCTTT+AGG + chr1_3:3076995-3077014 Msa0097270:intron 30.0%
CAAATGATATGCAAATTGTG+TGG + chr1_3:3077150-3077169 Msa0097270:intron 30.0%
AGAAGTAGAGATTAATGAGT+TGG + chr1_3:3077421-3077440 Msa0097270:intron 30.0%
TACATGTGATGCACAATTTA+AGG + chr1_3:3077723-3077742 Msa0097270:intron 30.0%
! AAAAAGTATAGTTCAACAGC+TGG - chr1_3:3078006-3078025 None:intergenic 30.0%
AACTCTTACATTAGACAAAC+AGG - chr1_3:3078062-3078081 None:intergenic 30.0%
CAACATTATCCAAAAGAGAA+CGG - chr1_3:3078189-3078208 None:intergenic 30.0%
!!! ACACTAGTTTTTCCTAATCA+TGG + chr1_3:3078640-3078659 Msa0097270:intron 30.0%
AAACTGTTGGATTAATCCAA+CGG - chr1_3:3078832-3078851 None:intergenic 30.0%
! GTTCACTTTCTTCATTTTCA+TGG + chr1_3:3078907-3078926 Msa0097270:intron 30.0%
! ATGGTTCAGATATTGTTTCT+AGG - chr1_3:3079050-3079069 None:intergenic 30.0%
!! TGTGGCTATTTAAGTTTTCT+AGG - chr1_3:3079134-3079153 None:intergenic 30.0%
CCAGTTCATAATATACTTTG+TGG - chr1_3:3079152-3079171 None:intergenic 30.0%
CCACAAAGTATATTATGAAC+TGG + chr1_3:3079149-3079168 Msa0097270:intron 30.0%
! TTTTATTCCCAACTGTTGAT+TGG + chr1_3:3079300-3079319 Msa0097270:intron 30.0%
!!! TTGAAATTGGTTTTGGTTCA+CGG + chr1_3:3079340-3079359 Msa0097270:intron 30.0%
! GAGTTTTTGATGAACCTAAT+TGG + chr1_3:3079497-3079516 Msa0097270:CDS 30.0%
! GTTTTTGATGAACCTAATTG+GGG + chr1_3:3079499-3079518 Msa0097270:CDS 30.0%
!! ATGATGATATCGATTCAGTT+TGG + chr1_3:3079536-3079555 Msa0097270:CDS 30.0%
!! TGATGATATCGATTCAGTTT+GGG + chr1_3:3079537-3079556 Msa0097270:CDS 30.0%
AGTAATTAAACCACCAACAT+TGG - chr1_3:3079687-3079706 None:intergenic 30.0%
CTATCAAGTTACAATAAAGC+AGG - chr1_3:3079718-3079737 None:intergenic 30.0%
ATTGAGTAATGGTACTAGTT+TGG - chr1_3:3079828-3079847 None:intergenic 30.0%
! CTTGGTAATTCTTCAATTTG+AGG - chr1_3:3079894-3079913 None:intergenic 30.0%
CTCAAATTGAAGAATTACCA+AGG + chr1_3:3079892-3079911 Msa0097270:intron 30.0%
!!! TGTTTTTTTTGTTGTCGTGT+GGG - chr1_3:3079967-3079986 None:intergenic 30.0%
TTTAATAGCCTTCCCAAAAA+AGG + chr1_3:3080030-3080049 Msa0097270:intron 30.0%
TTAATAGCCTTCCCAAAAAA+GGG + chr1_3:3080031-3080050 Msa0097270:intron 30.0%
!!! TTATTTGACAGCCCTTTTTT+GGG - chr1_3:3080045-3080064 None:intergenic 30.0%
!!! ATTATTTGACAGCCCTTTTT+TGG - chr1_3:3080046-3080065 None:intergenic 30.0%
TATTGGCAAAAAGACAATGT+TGG + chr1_3:3080156-3080175 Msa0097270:intron 30.0%
! GTCTTATCTAGTTGATTCAT+AGG + chr1_3:3080231-3080250 Msa0097270:intron 30.0%
AAAAATGCCTAAAATGACAG+TGG + chr1_3:3080349-3080368 Msa0097270:intron 30.0%
GCATATGTGGAATTGAATAT+TGG - chr1_3:3080425-3080444 None:intergenic 30.0%
! TTTGCAGATTAGCTAGTATT+GGG - chr1_3:3080457-3080476 None:intergenic 30.0%
TTATGACTGATACGAATTCA+TGG + chr1_3:3080552-3080571 Msa0097270:intron 30.0%
GATACGAATTCATGGTTATT+TGG + chr1_3:3080560-3080579 Msa0097270:intron 30.0%
! GACAACTATTTCTTTAGTTC+TGG + chr1_3:3080734-3080753 Msa0097270:CDS 30.0%
!!! TGTGGTGAAGATGTTTTAAT+GGG - chr1_3:3080776-3080795 None:intergenic 30.0%
ATAATGTATCTTTACCTGCT+CGG + chr1_3:3080951-3080970 Msa0097270:CDS 30.0%
!! TTTTCTTGCTTTTGATGACT+CGG + chr1_3:3081033-3081052 Msa0097270:CDS 30.0%
AATGCACTGTAGACTATTTC+AGG - chr1_3:3072987-3073006 None:intergenic 35.0%
ATAGTCTACAGTGCATTGTA+TGG + chr1_3:3072990-3073009 Msa0097270:CDS 35.0%
!!! GCAGGAAAGTAGTTTTGATT+TGG - chr1_3:3073101-3073120 None:intergenic 35.0%
GTAGGATATTGTGATTGTGT+AGG - chr1_3:3073299-3073318 None:intergenic 35.0%
!! GCTTCTGATTCATTTTTCAG+AGG + chr1_3:3073338-3073357 Msa0097270:CDS 35.0%
!! TCTGATTCATTTTTCAGAGG+AGG + chr1_3:3073341-3073360 Msa0097270:CDS 35.0%
!! CTGATTCATTTTTCAGAGGA+GGG + chr1_3:3073342-3073361 Msa0097270:CDS 35.0%
!! TGATTCATTTTTCAGAGGAG+GGG + chr1_3:3073343-3073362 Msa0097270:CDS 35.0%
AAGTAGACAAGGATAGAGAT+GGG + chr1_3:3073660-3073679 Msa0097270:CDS 35.0%
ATAGAGATGGGAAAATCACA+AGG + chr1_3:3073672-3073691 Msa0097270:CDS 35.0%
TAGAGATGGGAAAATCACAA+GGG + chr1_3:3073673-3073692 Msa0097270:CDS 35.0%
GATGGACATGTTTCTTAGTT+GGG + chr1_3:3073703-3073722 Msa0097270:CDS 35.0%
!! ATTTCCTTTTGTTTGGACCA+TGG + chr1_3:3073754-3073773 Msa0097270:intron 35.0%
TTAACCATGGTCCAAACAAA+AGG - chr1_3:3073761-3073780 None:intergenic 35.0%
!!! TTTTCCAGAGATTTTGAAGC+AGG + chr1_3:3073877-3073896 Msa0097270:intron 35.0%
TTGTATTGCATTGCACCTAA+TGG + chr1_3:3073952-3073971 Msa0097270:CDS 35.0%
! CTTCTTGATTTACTGACTAG+TGG + chr1_3:3074025-3074044 Msa0097270:CDS 35.0%
AGTTAAAGGACTAAGGAGAT+TGG - chr1_3:3074059-3074078 None:intergenic 35.0%
ATCTCCTTAGTCCTTTAACT+TGG + chr1_3:3074059-3074078 Msa0097270:CDS 35.0%
! TCTCCTTAGTCCTTTAACTT+GGG + chr1_3:3074060-3074079 Msa0097270:CDS 35.0%
! AAGCATGGTAGTTAGTTCTT+CGG - chr1_3:3074105-3074124 None:intergenic 35.0%
! TTCCTCCTTTTATCTTCGAA+AGG + chr1_3:3074171-3074190 Msa0097270:intron 35.0%
GAACACCTTTCGAAGATAAA+AGG - chr1_3:3074179-3074198 None:intergenic 35.0%
GAAATCCAAAATTCCAGTCA+TGG + chr1_3:3074314-3074333 Msa0097270:CDS 35.0%
TATTATTGGGGTACATTAGG+AGG + chr1_3:3074496-3074515 Msa0097270:intron 35.0%
CTGCCAAATACTACTTTGAT+TGG + chr1_3:3074755-3074774 Msa0097270:intron 35.0%
TGCCATCTACATACTTTGTA+TGG + chr1_3:3074819-3074838 Msa0097270:intron 35.0%
GACCATACAAAGTATGTAGA+TGG - chr1_3:3074824-3074843 None:intergenic 35.0%
!! TGATTAGTTTGAGGATATGG+TGG + chr1_3:3074856-3074875 Msa0097270:intron 35.0%
ACGTCAGTGTAAGTTGTATT+TGG + chr1_3:3074880-3074899 Msa0097270:intron 35.0%
! TCATTAGTTTGAGGATATGG+TGG + chr1_3:3074905-3074924 Msa0097270:intron 35.0%
GAGACAGATTGTCTACTATT+GGG + chr1_3:3075123-3075142 Msa0097270:intron 35.0%
ACTTGTGAAAGAATGGATCT+TGG + chr1_3:3075155-3075174 Msa0097270:intron 35.0%
GATGCAAAATGTATGTACCT+AGG + chr1_3:3075219-3075238 Msa0097270:intron 35.0%
ATTTCTTCTATTGTGAACCC+AGG + chr1_3:3075278-3075297 Msa0097270:intron 35.0%
! ATCAGCATGTATCCTTTTTG+TGG - chr1_3:3075510-3075529 None:intergenic 35.0%
TGGCTCAATATATGAATTCC+AGG + chr1_3:3075585-3075604 Msa0097270:intron 35.0%
CATACAGGTCCAATAACATA+TGG + chr1_3:3075699-3075718 Msa0097270:intron 35.0%
GATATAGCGATGCAAAATTC+GGG - chr1_3:3075768-3075787 None:intergenic 35.0%
ATATCTAGGGATTGTCAAGT+TGG + chr1_3:3075827-3075846 Msa0097270:intron 35.0%
AAATACTGATGACACAGTAC+AGG + chr1_3:3075860-3075879 Msa0097270:intron 35.0%
ACGGACCTGAAAATTGTATT+TGG - chr1_3:3075948-3075967 None:intergenic 35.0%
CAATTCTATCCTTGATGAAC+TGG + chr1_3:3075979-3075998 Msa0097270:CDS 35.0%
AATGAACTGTGCAAGAAGTA+TGG + chr1_3:3076013-3076032 Msa0097270:CDS 35.0%
! ACATTAGTAGAGCTACCTTT+TGG + chr1_3:3076055-3076074 Msa0097270:CDS 35.0%
! CAACTAATATCAAGTTGTGC+TGG - chr1_3:3076277-3076296 None:intergenic 35.0%
ATATTAGTTGCCTGATCAAG+TGG + chr1_3:3076287-3076306 Msa0097270:intron 35.0%
GTAACCTTTGAACTACTTTG+CGG + chr1_3:3076348-3076367 Msa0097270:intron 35.0%
GCTATATGGTTCTTCGTAAT+AGG + chr1_3:3076512-3076531 Msa0097270:intron 35.0%
GAAGAGTCAATTTGTAGTCA+AGG - chr1_3:3076718-3076737 None:intergenic 35.0%
AAGGTGATAACTGAATCAAG+AGG - chr1_3:3076797-3076816 None:intergenic 35.0%
CTCAAATTAATCCTTTAGGC+TGG + chr1_3:3076999-3077018 Msa0097270:intron 35.0%
! GGTATCTGCCATAAATTTTG+AGG + chr1_3:3077171-3077190 Msa0097270:intron 35.0%
GATATGAAACCACATTGACA+TGG + chr1_3:3077208-3077227 Msa0097270:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr1_3:3077297-3077316 Msa0097270:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr1_3:3077300-3077319 Msa0097270:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr1_3:3077304-3077323 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACT+GGG + chr1_3:3077308-3077327 Msa0097270:intron 35.0%
!!! GACCTGTAGATGTTTTAGTA+AGG + chr1_3:3077359-3077378 Msa0097270:intron 35.0%
CTCCTTACTAAAACATCTAC+AGG - chr1_3:3077364-3077383 None:intergenic 35.0%
CTCTTATAATTTAGGCAGCA+CGG + chr1_3:3077569-3077588 Msa0097270:intron 35.0%
CATTCAATCCTAATAGAGAG+GGG - chr1_3:3077697-3077716 None:intergenic 35.0%
GCATTCAATCCTAATAGAGA+GGG - chr1_3:3077698-3077717 None:intergenic 35.0%
TATCCAAAAGAGAACGGATA+GGG - chr1_3:3078183-3078202 None:intergenic 35.0%
TTATCCAAAAGAGAACGGAT+AGG - chr1_3:3078184-3078203 None:intergenic 35.0%
! CGTTCTCTTTTGGATAATGT+TGG + chr1_3:3078187-3078206 Msa0097270:intron 35.0%
! TCAAGAGTGTATTCTTTGAC+AGG - chr1_3:3078273-3078292 None:intergenic 35.0%
!!! TTTGGTTGCTTTTGTTTTGG+AGG - chr1_3:3078315-3078334 None:intergenic 35.0%
TCCAAAACAAAAGCAACCAA+AGG + chr1_3:3078314-3078333 Msa0097270:CDS 35.0%
!!! ACCTTTGGTTGCTTTTGTTT+TGG - chr1_3:3078318-3078337 None:intergenic 35.0%
TCTGACTTATCATCACTCTT+AGG - chr1_3:3078390-3078409 None:intergenic 35.0%
TCTCAGACTACAAATGAACA+AGG + chr1_3:3078414-3078433 Msa0097270:CDS 35.0%
ACTACAAATGAACAAGGAGT+AGG + chr1_3:3078420-3078439 Msa0097270:CDS 35.0%
!!! TGTGCCTTTTTGAAGTTTGT+GGG + chr1_3:3078704-3078723 Msa0097270:intron 35.0%
AGACTTCGCAGGATAATAAA+AGG - chr1_3:3078793-3078812 None:intergenic 35.0%
GTAAAGGAAAAGAACAAGAG+AGG + chr1_3:3079090-3079109 Msa0097270:intron 35.0%
ATGTGCATGATATAGAGTTG+AGG + chr1_3:3079246-3079265 Msa0097270:intron 35.0%
CATGATATAGAGTTGAGGTT+TGG + chr1_3:3079251-3079270 Msa0097270:intron 35.0%
AACCTTTCCAATCAACAGTT+GGG - chr1_3:3079310-3079329 None:intergenic 35.0%
TAACCTTTCCAATCAACAGT+TGG - chr1_3:3079311-3079330 None:intergenic 35.0%
GATATCATCATTTGTGTCGA+AGG - chr1_3:3079527-3079546 None:intergenic 35.0%
!! GATGATATCGATTCAGTTTG+GGG + chr1_3:3079538-3079557 Msa0097270:CDS 35.0%
ATGTGTGTCCTTCAAAAGAA+AGG - chr1_3:3079627-3079646 None:intergenic 35.0%
TTTATAACAAGCTGAGACCT+TGG - chr1_3:3079912-3079931 None:intergenic 35.0%
!!! GTGTTTTTTTTGTTGTCGTG+TGG - chr1_3:3079968-3079987 None:intergenic 35.0%
! GTCAAAGCATTCATAGCTAT+TGG + chr1_3:3080139-3080158 Msa0097270:intron 35.0%
TCAACTAGATAAGACAACCA+TGG - chr1_3:3080226-3080245 None:intergenic 35.0%
AAGACTCTAGTTATCACAGT+TGG + chr1_3:3080267-3080286 Msa0097270:intron 35.0%
AGACTCTAGTTATCACAGTT+GGG + chr1_3:3080268-3080287 Msa0097270:intron 35.0%
TGCATGTGTGGAATTGAAAA+GGG - chr1_3:3080393-3080412 None:intergenic 35.0%
! CTTTGCAGATTAGCTAGTAT+TGG - chr1_3:3080458-3080477 None:intergenic 35.0%
CAATACTAGCTAATCTGCAA+AGG + chr1_3:3080456-3080475 Msa0097270:intron 35.0%
AGTATCGTGTATAACTATCG+AGG - chr1_3:3080533-3080552 None:intergenic 35.0%
!! TAAGGTTTTATGATTGTGCC+TGG + chr1_3:3080606-3080625 Msa0097270:intron 35.0%
! CTGCTAAGAGTATAAGAGAA+TGG - chr1_3:3080649-3080668 None:intergenic 35.0%
!!! AAGATGTTTTAATGGGGTTG+TGG - chr1_3:3080769-3080788 None:intergenic 35.0%
!!! GTGGTGAAGATGTTTTAATG+GGG - chr1_3:3080775-3080794 None:intergenic 35.0%
!! CTGTGGTGAAGATGTTTTAA+TGG - chr1_3:3080777-3080796 None:intergenic 35.0%
CATTAAAACATCTTCACCAC+AGG + chr1_3:3080775-3080794 Msa0097270:CDS 35.0%
ATCATCAAAACTGAAACCAC+TGG - chr1_3:3080822-3080841 None:intergenic 35.0%
TAATGTATCTTTACCTGCTC+GGG + chr1_3:3080952-3080971 Msa0097270:CDS 35.0%
ACAGAATCAAAACTTACTGG+TGG - chr1_3:3080986-3081005 None:intergenic 35.0%
!! AGTAGTGCGAATTTTGATCA+TGG + chr1_3:3081010-3081029 Msa0097270:CDS 35.0%
CTCTCTAATGAAGTCCTAAA+AGG - chr1_3:3081076-3081095 None:intergenic 35.0%
CAATGCACCTAAACTTGTCA+CGG + chr1_3:3072935-3072954 Msa0097270:CDS 40.0%
TGTAGACTATTTCAGGAGTG+AGG - chr1_3:3072980-3072999 None:intergenic 40.0%
! TGATTTGGAAATGGTCCAAC+AGG - chr1_3:3073086-3073105 None:intergenic 40.0%
CAATATCCTACCTCTGTCAA+TGG + chr1_3:3073308-3073327 Msa0097270:CDS 40.0%
ACAATACCATTGACAGAGGT+AGG - chr1_3:3073317-3073336 None:intergenic 40.0%
AGCAACAATACCATTGACAG+AGG - chr1_3:3073321-3073340 None:intergenic 40.0%
GAAGTAGACAAGGATAGAGA+TGG + chr1_3:3073659-3073678 Msa0097270:CDS 40.0%
CGATGGACATGTTTCTTAGT+TGG + chr1_3:3073702-3073721 Msa0097270:CDS 40.0%
!!! AGAGATTTTGAAGCAGGTCT+GGG + chr1_3:3073883-3073902 Msa0097270:intron 40.0%
! ATGTTATTTGGAAGTACGGC+TGG - chr1_3:3074004-3074023 None:intergenic 40.0%
!! CTCCTTAGTCCTTTAACTTG+GGG + chr1_3:3074061-3074080 Msa0097270:CDS 40.0%
TTCCCCAAGTTAAAGGACTA+AGG - chr1_3:3074066-3074085 None:intergenic 40.0%
! GACTGATTTCCCCAAGTTAA+AGG - chr1_3:3074073-3074092 None:intergenic 40.0%
! TTAACTTGGGGAAATCAGTC+AGG + chr1_3:3074073-3074092 Msa0097270:CDS 40.0%
CACCTTTCGAAGATAAAAGG+AGG - chr1_3:3074176-3074195 None:intergenic 40.0%
! CTTCTCCATGACTGGAATTT+TGG - chr1_3:3074322-3074341 None:intergenic 40.0%
AAACATGTCATCCATTGAGG+TGG - chr1_3:3074624-3074643 None:intergenic 40.0%
AAAACCAGCAGCTATGTTAG+CGG - chr1_3:3074663-3074682 None:intergenic 40.0%
CATATGCAAGTTTCAGTCAG+CGG - chr1_3:3074994-3075013 None:intergenic 40.0%
GGAGACAGATTGTCTACTAT+TGG + chr1_3:3075122-3075141 Msa0097270:intron 40.0%
!!! TCTAGTTTTCTGCCTGCAAA+AGG + chr1_3:3075445-3075464 Msa0097270:intron 40.0%
GTCTTAACGAGACCACAAAA+AGG + chr1_3:3075495-3075514 Msa0097270:intron 40.0%
TCTTTGCTAGAATCTCTACC+TGG - chr1_3:3075606-3075625 None:intergenic 40.0%
!! ATCATCCAAGTTGATAACCG+AGG + chr1_3:3075660-3075679 Msa0097270:CDS 40.0%
GTTATTGGACCTGTATGTCA+GGG - chr1_3:3075696-3075715 None:intergenic 40.0%
TGTTATTGGACCTGTATGTC+AGG - chr1_3:3075697-3075716 None:intergenic 40.0%
GAGATTTCACCAGTTCATCA+AGG - chr1_3:3075991-3076010 None:intergenic 40.0%
ACCTGTAGTTCAGCAATTGA+AGG - chr1_3:3076227-3076246 None:intergenic 40.0%
TCACATGCTACGTTCATTGT+TGG + chr1_3:3076771-3076790 Msa0097270:intron 40.0%
TGGGACAAGCTTGAAGATAA+AGG + chr1_3:3077064-3077083 Msa0097270:CDS 40.0%
!! GTAGAAAAGATGGTGGAAAC+TGG + chr1_3:3077307-3077326 Msa0097270:intron 40.0%
AAACTGGGCTTAAGTGGTTT+GGG + chr1_3:3077323-3077342 Msa0097270:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr1_3:3077375-3077394 Msa0097270:intron 40.0%
GAGGATAGTCAGATCATTAG+AGG + chr1_3:3077397-3077416 Msa0097270:intron 40.0%
! AAGCCTTATCTCACTAAGTG+GGG - chr1_3:3077502-3077521 None:intergenic 40.0%
! CAAGCCTTATCTCACTAAGT+GGG - chr1_3:3077503-3077522 None:intergenic 40.0%
TGTATTTGCCCCTCTCTATT+AGG + chr1_3:3077686-3077705 Msa0097270:intron 40.0%
CGCATTCAATCCTAATAGAG+AGG - chr1_3:3077699-3077718 None:intergenic 40.0%
CAGGGTAAGTAAGAAAAGCT+AGG - chr1_3:3077925-3077944 None:intergenic 40.0%
CTGCTAGAAGAAAGAAAGCA+TGG - chr1_3:3078242-3078261 None:intergenic 40.0%
!!! CTTTTGTTTTGGAGGTGCTA+TGG - chr1_3:3078307-3078326 None:intergenic 40.0%
! GCTTTTGTGTTCACAACCTT+TGG - chr1_3:3078333-3078352 None:intergenic 40.0%
GGTTGTGAACACAAAAGCTT+TGG + chr1_3:3078335-3078354 Msa0097270:CDS 40.0%
! TTAGGCGACGCTACAAATTT+TGG - chr1_3:3078372-3078391 None:intergenic 40.0%
AATGAACAAGGAGTAGGCAA+CGG + chr1_3:3078426-3078445 Msa0097270:CDS 40.0%
TAGTACTGCTTGCAAATGGA+CGG - chr1_3:3078500-3078519 None:intergenic 40.0%
CCATTTGCAAGCAGTACTAT+CGG + chr1_3:3078501-3078520 Msa0097270:CDS 40.0%
TACTATCGGAAGTCCACATA+GGG + chr1_3:3078515-3078534 Msa0097270:CDS 40.0%
TCTGACATTCGAAAGACTTC+TGG + chr1_3:3078549-3078568 Msa0097270:CDS 40.0%
! TTGGGTGTCATCTTGATTAC+GGG - chr1_3:3078589-3078608 None:intergenic 40.0%
! CTTGGGTGTCATCTTGATTA+CGG - chr1_3:3078590-3078609 None:intergenic 40.0%
! TCCATACCTTTGGGTTTCTT+GGG - chr1_3:3078607-3078626 None:intergenic 40.0%
! ATCCATACCTTTGGGTTTCT+TGG - chr1_3:3078608-3078627 None:intergenic 40.0%
!!! CTGTGCCTTTTTGAAGTTTG+TGG + chr1_3:3078703-3078722 Msa0097270:intron 40.0%
!!! GTGCCTTTTTGAAGTTTGTG+GGG + chr1_3:3078705-3078724 Msa0097270:intron 40.0%
GATCCCCACAAACTTCAAAA+AGG - chr1_3:3078711-3078730 None:intergenic 40.0%
AGGATAATAAAAGGCAGGAG+GGG - chr1_3:3078784-3078803 None:intergenic 40.0%
CAGGATAATAAAAGGCAGGA+GGG - chr1_3:3078785-3078804 None:intergenic 40.0%
TTCGCAGGATAATAAAAGGC+AGG - chr1_3:3078789-3078808 None:intergenic 40.0%
TGTCTGACAGTGGTAAAGAT+TGG - chr1_3:3079024-3079043 None:intergenic 40.0%
!! TTCTAGGTTTTGTCTGACAG+TGG - chr1_3:3079034-3079053 None:intergenic 40.0%
! TTCCCAACTGTTGATTGGAA+AGG + chr1_3:3079305-3079324 Msa0097270:intron 40.0%
TCTTGCATATGCAGTGATCA+TGG + chr1_3:3079445-3079464 Msa0097270:intron 40.0%
ATTCAATGCCAGTAGCAAAG+AGG + chr1_3:3079561-3079580 Msa0097270:CDS 40.0%
TGCTGACAAGTGAATATAGC+AGG - chr1_3:3079664-3079683 None:intergenic 40.0%
TTGGGATGATTCACATGTAG+AGG + chr1_3:3080111-3080130 Msa0097270:intron 40.0%
CTGCATGTGTGGAATTGAAA+AGG - chr1_3:3080394-3080413 None:intergenic 40.0%
TACTAGCTAATCTGCAAAGG+AGG + chr1_3:3080459-3080478 Msa0097270:intron 40.0%
! GAGTCTCAACTCCTTTTGTA+AGG + chr1_3:3080498-3080517 Msa0097270:intron 40.0%
GGTCTCTTGAACCTTACAAA+AGG - chr1_3:3080512-3080531 None:intergenic 40.0%
ATGATTGTGCCTGGTATCAA+AGG + chr1_3:3080615-3080634 Msa0097270:intron 40.0%
TGATTGTGCCTGGTATCAAA+GGG + chr1_3:3080616-3080635 Msa0097270:intron 40.0%
GCATTTAACCCTTTGATACC+AGG - chr1_3:3080627-3080646 None:intergenic 40.0%
!! AGCAGTCTACTGATTGCTTT+TGG + chr1_3:3080664-3080683 Msa0097270:intron 40.0%
!! TTTCTTTAGTTCTGGAGACC+TGG + chr1_3:3080742-3080761 Msa0097270:CDS 40.0%
!! TTCTTTAGTTCTGGAGACCT+GGG + chr1_3:3080743-3080762 Msa0097270:CDS 40.0%
AACTGCTTGAGCTGAAAAGT+GGG - chr1_3:3080859-3080878 None:intergenic 40.0%
CGGACAGAATCAAAACTTAC+TGG - chr1_3:3080989-3081008 None:intergenic 40.0%
GATCAAAATTCGCACTACTG+CGG - chr1_3:3081009-3081028 None:intergenic 40.0%
! TTTGATGACTCGGATCTCTT+TGG + chr1_3:3081043-3081062 Msa0097270:CDS 40.0%
!!! TTTTTTCCGTCGTGCCGATT+TGG + chr1_3:3072636-3072655 Msa0097270:CDS 45.0%
!! AAGGATTTGTTGGGGCAAAC+CGG - chr1_3:3072713-3072732 None:intergenic 45.0%
!! ACCTGAGCAAGGATTTGTTG+GGG - chr1_3:3072721-3072740 None:intergenic 45.0%
! GACCTGAGCAAGGATTTGTT+GGG - chr1_3:3072722-3072741 None:intergenic 45.0%
AGACCTGAGCAAGGATTTGT+TGG - chr1_3:3072723-3072742 None:intergenic 45.0%
TGTGCAACCGTGACAAGTTT+AGG - chr1_3:3072945-3072964 None:intergenic 45.0%
AACTACTTTCCTGCTGTTGC+TGG + chr1_3:3073107-3073126 Msa0097270:CDS 45.0%
TAGTCCTACTGCTTCAACTC+AGG + chr1_3:3073217-3073236 Msa0097270:CDS 45.0%
TGTGATTGTGTAGGCCATGT+GGG - chr1_3:3073290-3073309 None:intergenic 45.0%
TTGTGATTGTGTAGGCCATG+TGG - chr1_3:3073291-3073310 None:intergenic 45.0%
CGTGGAGAAGAATCTTGGTT+GGG - chr1_3:3073395-3073414 None:intergenic 45.0%
TCGTGGAGAAGAATCTTGGT+TGG - chr1_3:3073396-3073415 None:intergenic 45.0%
AACCAAGATTCTTCTCCACG+AGG + chr1_3:3073395-3073414 Msa0097270:CDS 45.0%
ATCCTCGTGGAGAAGAATCT+TGG - chr1_3:3073400-3073419 None:intergenic 45.0%
ATGGCAGATGAAAATCCTCG+TGG - chr1_3:3073413-3073432 None:intergenic 45.0%
TCTGCCATTCTTCCTGTATC+TGG + chr1_3:3073425-3073444 Msa0097270:CDS 45.0%
CCATTCTTCCTGTATCTGGA+GGG + chr1_3:3073429-3073448 Msa0097270:CDS 45.0%
GAGGGAACCAGAGTTCTATT+AGG + chr1_3:3073447-3073466 Msa0097270:CDS 45.0%
TGGTGGTCCTAATAGAACTC+TGG - chr1_3:3073457-3073476 None:intergenic 45.0%
TGAGCTCTGCAAAGAATCAG+AGG - chr1_3:3073480-3073499 None:intergenic 45.0%
CATATTAGGTGCCTGAATGG+AGG - chr1_3:3073537-3073556 None:intergenic 45.0%
GTGCATATTAGGTGCCTGAA+TGG - chr1_3:3073540-3073559 None:intergenic 45.0%
CCAGGCAAACTGTGCATATT+AGG - chr1_3:3073551-3073570 None:intergenic 45.0%
CCTAATATGCACAGTTTGCC+TGG + chr1_3:3073548-3073567 Msa0097270:CDS 45.0%
TGCAATCTGACTGAAAGTCC+AGG - chr1_3:3073569-3073588 None:intergenic 45.0%
TGGACTTTCAGTCAGATTGC+AGG + chr1_3:3073568-3073587 Msa0097270:CDS 45.0%
TTCTGAGTCATTCTTGGCCA+CGG - chr1_3:3073620-3073639 None:intergenic 45.0%
TGGGAAAATCACAAGGGAAC+AGG + chr1_3:3073679-3073698 Msa0097270:CDS 45.0%
CTTAGTTGGGCATTACCAAG+AGG + chr1_3:3073716-3073735 Msa0097270:CDS 45.0%
CAGACCTGCTTCAAAATCTC+TGG - chr1_3:3073884-3073903 None:intergenic 45.0%
!!! CAGAGATTTTGAAGCAGGTC+TGG + chr1_3:3073882-3073901 Msa0097270:intron 45.0%
AAAGGACTAAGGAGATTGGC+AGG - chr1_3:3074055-3074074 None:intergenic 45.0%
CAACATCAGCAAGTGATGAC+TGG + chr1_3:3074198-3074217 Msa0097270:CDS 45.0%
AGCAAGTGATGACTGGATCT+GGG + chr1_3:3074205-3074224 Msa0097270:CDS 45.0%
! GATTTCTGCTGCTTGTTCTG+AGG - chr1_3:3074300-3074319 None:intergenic 45.0%
ATGAGATGCTTCTCCATGAC+TGG - chr1_3:3074330-3074349 None:intergenic 45.0%
AGCAACAGAAGCCGATAAGA+AGG + chr1_3:3074401-3074420 Msa0097270:CDS 45.0%
GGAGGTTCAATCCTCAACAA+AGG - chr1_3:3074530-3074549 None:intergenic 45.0%
! AGTACGGCGATTTTGTCAGA+GGG - chr1_3:3074551-3074570 None:intergenic 45.0%
! TTTTCCGCTAACATAGCTGC+TGG + chr1_3:3074656-3074675 Msa0097270:intron 45.0%
TGTATGTACCTAGGAACCAC+TGG + chr1_3:3075228-3075247 Msa0097270:intron 45.0%
TACACAAAAGAGTCCAGCCT+GGG - chr1_3:3075298-3075317 None:intergenic 45.0%
ATACACAAAAGAGTCCAGCC+TGG - chr1_3:3075299-3075318 None:intergenic 45.0%
AAGCATATGCAGCGCATGAA+AGG - chr1_3:3075372-3075391 None:intergenic 45.0%
!! TCATGATGGATGTGCAGAAC+AGG - chr1_3:3075901-3075920 None:intergenic 45.0%
! GGTAGCTCTACTAATGTCGT+GGG - chr1_3:3076052-3076071 None:intergenic 45.0%
! AGGTAGCTCTACTAATGTCG+TGG - chr1_3:3076053-3076072 None:intergenic 45.0%
GCCTTCAATTGCTGAACTAC+AGG + chr1_3:3076223-3076242 Msa0097270:intron 45.0%
! AAATGCCATGCCACTTGATC+AGG - chr1_3:3076300-3076319 None:intergenic 45.0%
TGTGCCGCAAAGTAGTTCAA+AGG - chr1_3:3076355-3076374 None:intergenic 45.0%
CTTTGCGGCACAATTCTGTA+TGG + chr1_3:3076363-3076382 Msa0097270:intron 45.0%
CGGCACAATTCTGTATGGAA+AGG + chr1_3:3076368-3076387 Msa0097270:intron 45.0%
! TGCTGATTGGGATGAGGATT+GGG + chr1_3:3077045-3077064 Msa0097270:CDS 45.0%
GAAACTGGGCTTAAGTGGTT+TGG + chr1_3:3077322-3077341 Msa0097270:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr1_3:3077378-3077397 Msa0097270:intron 45.0%
GAACCCCACTTAGTGAGATA+AGG + chr1_3:3077496-3077515 Msa0097270:intron 45.0%
! CCAAGCCTTATCTCACTAAG+TGG - chr1_3:3077504-3077523 None:intergenic 45.0%
CCACTTAGTGAGATAAGGCT+TGG + chr1_3:3077501-3077520 Msa0097270:intron 45.0%
CTTAGTGAGATAAGGCTTGG+TGG + chr1_3:3077504-3077523 Msa0097270:intron 45.0%
! TGCAAGAGAGGTGTATATGC+AGG - chr1_3:3077948-3077967 None:intergenic 45.0%
CAGAACTACAGATGCAAGAG+AGG - chr1_3:3077960-3077979 None:intergenic 45.0%
CCGATAGTACTGCTTGCAAA+TGG - chr1_3:3078504-3078523 None:intergenic 45.0%
GTACTATCGGAAGTCCACAT+AGG + chr1_3:3078514-3078533 Msa0097270:CDS 45.0%
ACTATCGGAAGTCCACATAG+GGG + chr1_3:3078516-3078535 Msa0097270:CDS 45.0%
GAATGAACAAAGCCCCTATG+TGG - chr1_3:3078531-3078550 None:intergenic 45.0%
! TGGGTGTCATCTTGATTACG+GGG - chr1_3:3078588-3078607 None:intergenic 45.0%
ATGACACCCAAGAAACCCAA+AGG + chr1_3:3078598-3078617 Msa0097270:CDS 45.0%
ACCCAAGAAACCCAAAGGTA+TGG + chr1_3:3078603-3078622 Msa0097270:intron 45.0%
TGAGCAACTCGACCATGATT+AGG - chr1_3:3078655-3078674 None:intergenic 45.0%
! TCATGGTCGAGTTGCTCATT+TGG + chr1_3:3078657-3078676 Msa0097270:intron 45.0%
GCAGGATAATAAAAGGCAGG+AGG - chr1_3:3078786-3078805 None:intergenic 45.0%
AATTGCAAAGGAGACTTCGC+AGG - chr1_3:3078804-3078823 None:intergenic 45.0%
CCAACGGCACATAATTGCAA+AGG - chr1_3:3078816-3078835 None:intergenic 45.0%
CCTTTGCAATTATGTGCCGT+TGG + chr1_3:3078813-3078832 Msa0097270:intron 45.0%
ACAAGAGAGGAGAAACAAGC+TGG + chr1_3:3079103-3079122 Msa0097270:intron 45.0%
TGCATATGCAGTGATCATGG+TGG + chr1_3:3079448-3079467 Msa0097270:intron 45.0%
CTTGCATACCTCTTTGCTAC+TGG - chr1_3:3079572-3079591 None:intergenic 45.0%
TCACTTGTCAGCACCAATGT+TGG + chr1_3:3079671-3079690 Msa0097270:intron 45.0%
TGGTGTGCTAGACTACTATC+AGG - chr1_3:3079772-3079791 None:intergenic 45.0%
ACCACACCTATGTATACCAG+TGG + chr1_3:3079788-3079807 Msa0097270:intron 45.0%
ACCACTGGTATACATAGGTG+TGG - chr1_3:3079792-3079811 None:intergenic 45.0%
CCTAGACCACTGGTATACAT+AGG - chr1_3:3079797-3079816 None:intergenic 45.0%
CCTATGTATACCAGTGGTCT+AGG + chr1_3:3079794-3079813 Msa0097270:intron 45.0%
!!! TTGACAGCCCTTTTTTGGGA+AGG - chr1_3:3080041-3080060 None:intergenic 45.0%
TGTTAGAGCCAACACTGTGT+CGG + chr1_3:3080084-3080103 Msa0097270:intron 45.0%
ATGTTGGACTGATGCTTACC+AGG + chr1_3:3080172-3080191 Msa0097270:intron 45.0%
GACTGATGCTTACCAGGAAT+AGG + chr1_3:3080178-3080197 Msa0097270:intron 45.0%
!! ATGGTGCTGACAGATCTGAT+CGG - chr1_3:3080207-3080226 None:intergenic 45.0%
ATCACAGTTGGGTTAACTCG+CGG + chr1_3:3080279-3080298 Msa0097270:intron 45.0%
TGGGATATCAGCTGCATATG+TGG - chr1_3:3080438-3080457 None:intergenic 45.0%
! GTTTTTACAGGAGAGAGAGC+TGG + chr1_3:3080700-3080719 Msa0097270:intron 45.0%
AAAACATCTTCACCACAGGC+TGG + chr1_3:3080779-3080798 Msa0097270:CDS 45.0%
!! AACTGAAACCACTGGTCTTC+AGG - chr1_3:3080814-3080833 None:intergenic 45.0%
ACTGCTTGAGCTGAAAAGTG+GGG - chr1_3:3080858-3080877 None:intergenic 45.0%
GAACTGCTTGAGCTGAAAAG+TGG - chr1_3:3080860-3080879 None:intergenic 45.0%
ACGACCGTCGCAATCCAAAT+CGG - chr1_3:3072653-3072672 None:intergenic 50.0%
GGAACCTTGGAAGAAGGAGA+CGG - chr1_3:3072692-3072711 None:intergenic 50.0%
GTCTCCTTCTTCCAAGGTTC+CGG + chr1_3:3072691-3072710 Msa0097270:CDS 50.0%
CAAACCGGAACCTTGGAAGA+AGG - chr1_3:3072698-3072717 None:intergenic 50.0%
AAGAGAGAGAGACCTGAGCA+AGG - chr1_3:3072732-3072751 None:intergenic 50.0%
GGGAAATTGATCTGAGGAGC+AGG - chr1_3:3073035-3073054 None:intergenic 50.0%
GTGGCAGGGAAATTGATCTG+AGG - chr1_3:3073041-3073060 None:intergenic 50.0%
TGGAAATGGTCCAACAGGTG+CGG - chr1_3:3073081-3073100 None:intergenic 50.0%
CATGTTGCCATAAGCAGGCA+AGG - chr1_3:3073156-3073175 None:intergenic 50.0%
CTTGCCTGCTTATGGCAACA+TGG + chr1_3:3073154-3073173 Msa0097270:CDS 50.0%
TTCCTCTAACGTGTGGTCGT+TGG - chr1_3:3073196-3073215 None:intergenic 50.0%
!! GGACTAGTTCCTCTAACGTG+TGG - chr1_3:3073203-3073222 None:intergenic 50.0%
TCCTACTGCTTCAACTCAGG+AGG + chr1_3:3073220-3073239 Msa0097270:CDS 50.0%
! TCCTCCTGAGTTGAAGCAGT+AGG - chr1_3:3073224-3073243 None:intergenic 50.0%
GCTTCAACTCAGGAGGAGTT+TGG + chr1_3:3073227-3073246 Msa0097270:CDS 50.0%
TGATTGTGTAGGCCATGTGG+GGG - chr1_3:3073288-3073307 None:intergenic 50.0%
GTGATTGTGTAGGCCATGTG+GGG - chr1_3:3073289-3073308 None:intergenic 50.0%
ATCTTGGTTGGGCTGAGATG+AGG - chr1_3:3073384-3073403 None:intergenic 50.0%
GCCATTCTTCCTGTATCTGG+AGG + chr1_3:3073428-3073447 Msa0097270:CDS 50.0%
CCCTCCAGATACAGGAAGAA+TGG - chr1_3:3073432-3073451 None:intergenic 50.0%
CTGCAAAGAATCAGAGGTGG+TGG - chr1_3:3073474-3073493 None:intergenic 50.0%
GCTCTGCAAAGAATCAGAGG+TGG - chr1_3:3073477-3073496 None:intergenic 50.0%
AGATTGCAGGATTCTGCGTC+AGG + chr1_3:3073581-3073600 Msa0097270:CDS 50.0%
ATTCTTGGCCACGGAGATTG+GGG - chr1_3:3073611-3073630 None:intergenic 50.0%
CATTCTTGGCCACGGAGATT+GGG - chr1_3:3073612-3073631 None:intergenic 50.0%
TCATTCTTGGCCACGGAGAT+TGG - chr1_3:3073613-3073632 None:intergenic 50.0%
AATCACAAGGGAACAGGCGA+TGG + chr1_3:3073685-3073704 Msa0097270:CDS 50.0%
CAGCAAGTGATGACTGGATC+TGG + chr1_3:3074204-3074223 Msa0097270:CDS 50.0%
GCAAGTGATGACTGGATCTG+GGG + chr1_3:3074206-3074225 Msa0097270:CDS 50.0%
ATGTCAACCCTACTGCAGGT+CGG + chr1_3:3074235-3074254 Msa0097270:CDS 50.0%
!! TTCTGAGGTCCTTCGTCAGA+TGG - chr1_3:3074285-3074304 None:intergenic 50.0%
! AGGTTCTAGCGCCTTTGTTG+AGG + chr1_3:3074516-3074535 Msa0097270:CDS 50.0%
! GAGTACGGCGATTTTGTCAG+AGG - chr1_3:3074552-3074571 None:intergenic 50.0%
TCCATTGAGGTGGTACTGCT+AGG - chr1_3:3074614-3074633 None:intergenic 50.0%
! TTCGTAGGCATCGCTCTTCT+GGG - chr1_3:3075254-3075273 None:intergenic 50.0%
! TTTCGTAGGCATCGCTCTTC+TGG - chr1_3:3075255-3075274 None:intergenic 50.0%
CTTCTATTGTGAACCCAGGC+TGG + chr1_3:3075282-3075301 Msa0097270:intron 50.0%
GGCTTCCTCGGTTATCAACT+TGG - chr1_3:3075668-3075687 None:intergenic 50.0%
AGCCACATTCCCTGACATAC+AGG + chr1_3:3075684-3075703 Msa0097270:CDS 50.0%
GACCTGTATGTCAGGGAATG+TGG - chr1_3:3075689-3075708 None:intergenic 50.0%
AGTTGCCTGATCAAGTGGCA+TGG + chr1_3:3076292-3076311 Msa0097270:intron 50.0%
ACTCATGAGACTCGTGAGCA+GGG - chr1_3:3076874-3076893 None:intergenic 50.0%
AATCCTTTAGGCTGGCAACC+TGG + chr1_3:3077007-3077026 Msa0097270:intron 50.0%
ATACCAGGTTGCCAGCCTAA+AGG - chr1_3:3077013-3077032 None:intergenic 50.0%
TGGCAACCTGGTATCCAAGA+AGG + chr1_3:3077019-3077038 Msa0097270:CDS 50.0%
TCCAAGAAGGAGCTGCTGAT+TGG + chr1_3:3077032-3077051 Msa0097270:CDS 50.0%
! CCAAGAAGGAGCTGCTGATT+GGG + chr1_3:3077033-3077052 Msa0097270:CDS 50.0%
! CTGCTGATTGGGATGAGGAT+TGG + chr1_3:3077044-3077063 Msa0097270:CDS 50.0%
ACCACATTGACATGGACGCT+TGG + chr1_3:3077216-3077235 Msa0097270:intron 50.0%
TCCAAGCGTCCATGTCAATG+TGG - chr1_3:3077220-3077239 None:intergenic 50.0%
TGGTGGAAACTGGGCTTAAG+TGG + chr1_3:3077317-3077336 Msa0097270:intron 50.0%
ACTAAGTGGGGTTCGCTACA+TGG - chr1_3:3077490-3077509 None:intergenic 50.0%
AGAGAGGGGCAAATACAGCT+AGG - chr1_3:3077683-3077702 None:intergenic 50.0%
TGCATGTGTCGTGAGTAAGC+AGG - chr1_3:3077824-3077843 None:intergenic 50.0%
! GAGAGGTGTATATGCAGGCA+GGG - chr1_3:3077943-3077962 None:intergenic 50.0%
! AGAGAGGTGTATATGCAGGC+AGG - chr1_3:3077944-3077963 None:intergenic 50.0%
TAGTTCAACAGCTGGCGAAG+TGG - chr1_3:3077998-3078017 None:intergenic 50.0%
! GGTCCCTATCCGTTCTCTTT+TGG + chr1_3:3078177-3078196 Msa0097270:intron 50.0%
CTGCTTGCAAATGGACGGTT+AGG - chr1_3:3078495-3078514 None:intergenic 50.0%
GTGTCGAAGGTTCCCCAATT+AGG - chr1_3:3079514-3079533 None:intergenic 50.0%
CTTGTCAGCACCAATGTTGG+TGG + chr1_3:3079674-3079693 Msa0097270:intron 50.0%
CAACACTGTGTCGGATGGTT+GGG + chr1_3:3080093-3080112 Msa0097270:intron 50.0%
TCTGATCGGTGACCTATTCC+TGG - chr1_3:3080193-3080212 None:intergenic 50.0%
GATCAGATCTGTCAGCACCA+TGG + chr1_3:3080206-3080225 Msa0097270:intron 50.0%
TCACAGTTGGGTTAACTCGC+GGG + chr1_3:3080280-3080299 Msa0097270:intron 50.0%
!!! CACGGCACCACTGTCATTTT+AGG - chr1_3:3080359-3080378 None:intergenic 50.0%
TGGGATATCAGCTGCATGTG+TGG - chr1_3:3080405-3080424 None:intergenic 50.0%
TTACAGGAGAGAGAGCTGGA+TGG + chr1_3:3080704-3080723 Msa0097270:intron 50.0%
! TTTTAATGGGGTTGTGGCCC+AGG - chr1_3:3080763-3080782 None:intergenic 50.0%
GATCTCTTCCTGAAGACCAG+TGG + chr1_3:3080803-3080822 Msa0097270:CDS 50.0%
AACCAGTCTCTAGGCCTTTG+CGG - chr1_3:3080884-3080903 None:intergenic 50.0%
GTGTTCTCCAACCAGTCTCT+AGG - chr1_3:3080893-3080912 None:intergenic 50.0%
!! ACTCGGATCTCTTTGGCTCT+GGG + chr1_3:3081050-3081069 Msa0097270:CDS 50.0%
!!! TCTTTGGCTCTGGGCCTTTT+AGG + chr1_3:3081059-3081078 Msa0097270:CDS 50.0%
CGCAATCCAAATCGGCACGA+CGG - chr1_3:3072645-3072664 None:intergenic 55.0%
!! CGTGCCGATTTGGATTGCGA+CGG + chr1_3:3072646-3072665 Msa0097270:CDS 55.0%
GATTGCGACGGTCGTATCAG+CGG + chr1_3:3072658-3072677 Msa0097270:CDS 55.0%
GAAGCCGTCTCCTTCTTCCA+AGG + chr1_3:3072685-3072704 Msa0097270:CDS 55.0%
GCCCCAACAAATCCTTGCTC+AGG + chr1_3:3072717-3072736 Msa0097270:intron 55.0%
AATGGTCCAACAGGTGCGGA+TGG - chr1_3:3073077-3073096 None:intergenic 55.0%
GTTGCCATAAGCAGGCAAGG+CGG - chr1_3:3073153-3073172 None:intergenic 55.0%
CCAGCCATGTTGCCATAAGC+AGG - chr1_3:3073161-3073180 None:intergenic 55.0%
CCTGCTTATGGCAACATGGC+TGG + chr1_3:3073158-3073177 Msa0097270:CDS 55.0%
GCTTATGGCAACATGGCTGG+AGG + chr1_3:3073161-3073180 Msa0097270:CDS 55.0%
TATGGCAACATGGCTGGAGG+AGG + chr1_3:3073164-3073183 Msa0097270:CDS 55.0%
CTAACGTGTGGTCGTTGGAG+AGG - chr1_3:3073191-3073210 None:intergenic 55.0%
CTCCAACGACCACACGTTAG+AGG + chr1_3:3073191-3073210 Msa0097270:CDS 55.0%
TAACTGTTGCACCCCCCACA+TGG + chr1_3:3073273-3073292 Msa0097270:CDS 55.0%
GATTGTGTAGGCCATGTGGG+GGG - chr1_3:3073287-3073306 None:intergenic 55.0%
TTGGTTGGGCTGAGATGAGG+TGG - chr1_3:3073381-3073400 None:intergenic 55.0%
! CTCTGGTTCCCTCCAGATAC+AGG - chr1_3:3073440-3073459 None:intergenic 55.0%
GAACCAGCATGCCTCCATTC+AGG + chr1_3:3073523-3073542 Msa0097270:CDS 55.0%
TGCACCTAATGGAGCGACAC+AGG + chr1_3:3073963-3073982 Msa0097270:CDS 55.0%
GCACCTAATGGAGCGACACA+GGG + chr1_3:3073964-3073983 Msa0097270:CDS 55.0%
CTAATGGAGCGACACAGGGA+GGG + chr1_3:3073968-3073987 Msa0097270:CDS 55.0%
CGACATGTCAACCCTACTGC+AGG + chr1_3:3074231-3074250 Msa0097270:CDS 55.0%
GAGGTCCTTCGTCAGATGGA+GGG - chr1_3:3074281-3074300 None:intergenic 55.0%
TGAGGTCCTTCGTCAGATGG+AGG - chr1_3:3074282-3074301 None:intergenic 55.0%
! ACGGCGATTTTGTCAGAGGG+AGG - chr1_3:3074548-3074567 None:intergenic 55.0%
GCCTAGCAGTACCACCTCAA+TGG + chr1_3:3074610-3074629 Msa0097270:intron 55.0%
GTCAGGGAATGTGGCTTCCT+CGG - chr1_3:3075680-3075699 None:intergenic 55.0%
GACTCATGAGACTCGTGAGC+AGG - chr1_3:3076875-3076894 None:intergenic 55.0%
GCAGCTCCTTCTTGGATACC+AGG - chr1_3:3077028-3077047 None:intergenic 55.0%
CCCAATCAGCAGCTCCTTCT+TGG - chr1_3:3077036-3077055 None:intergenic 55.0%
! AGGAGCTGCTGATTGGGATG+AGG + chr1_3:3077039-3077058 Msa0097270:CDS 55.0%
GTGTCGTGAGTAAGCAGGCA+TGG - chr1_3:3077819-3077838 None:intergenic 55.0%
! GGCGACTTTTCCTAGACCAC+TGG - chr1_3:3079807-3079826 None:intergenic 55.0%
AGAGCCAACACTGTGTCGGA+TGG + chr1_3:3080088-3080107 Msa0097270:intron 55.0%
CCAACCATCCGACACAGTGT+TGG - chr1_3:3080095-3080114 None:intergenic 55.0%
CCAACACTGTGTCGGATGGT+TGG + chr1_3:3080092-3080111 Msa0097270:intron 55.0%
!! TGGGTTAACTCGCGGGTTAG+AGG + chr1_3:3080287-3080306 Msa0097270:intron 55.0%
!! GGGTTAACTCGCGGGTTAGA+GGG + chr1_3:3080288-3080307 Msa0097270:intron 55.0%
AGGAAGAGATCACCAGCCTG+TGG - chr1_3:3080794-3080813 None:intergenic 55.0%
! GAGCTGAAAAGTGGGGTGCT+TGG - chr1_3:3080851-3080870 None:intergenic 55.0%
ACCAGTCTCTAGGCCTTTGC+GGG - chr1_3:3080883-3080902 None:intergenic 55.0%
GCAAAGGCCTAGAGACTGGT+TGG + chr1_3:3080883-3080902 Msa0097270:CDS 55.0%
! GACTCGGATCTCTTTGGCTC+TGG + chr1_3:3081049-3081068 Msa0097270:CDS 55.0%
GTTGGGGCAAACCGGAACCT+TGG - chr1_3:3072705-3072724 None:intergenic 60.0%
GCAAGGCGGAGGAAGTTGCA+GGG - chr1_3:3073139-3073158 None:intergenic 60.0%
TCCTCCGCCTTGCCTGCTTA+TGG + chr1_3:3073146-3073165 Msa0097270:CDS 60.0%
! GTGCCTGAATGGAGGCATGC+TGG - chr1_3:3073529-3073548 None:intergenic 60.0%
! CCTCCCTGTGTCGCTCCATT+AGG - chr1_3:3073970-3073989 None:intergenic 60.0%
CCTAATGGAGCGACACAGGG+AGG + chr1_3:3073967-3073986 Msa0097270:CDS 60.0%
! TTGGTGGCCGACCTGCAGTA+GGG - chr1_3:3074245-3074264 None:intergenic 60.0%
GCTGTCCCTCCATCTGACGA+AGG + chr1_3:3074273-3074292 Msa0097270:CDS 60.0%
CTTCTGGGCCAGTGGTTCCT+AGG - chr1_3:3075239-3075258 None:intergenic 60.0%
GAGAGAGAGCTGGATGGAGC+TGG + chr1_3:3080710-3080729 Msa0097270:CDS 60.0%
GCTCAAGCAGTTCCCCGCAA+AGG + chr1_3:3080867-3080886 Msa0097270:CDS 60.0%
CCAGTCTCTAGGCCTTTGCG+GGG - chr1_3:3080882-3080901 None:intergenic 60.0%
GCGGGGGAGTAACAGTGGCA+GGG - chr1_3:3073055-3073074 None:intergenic 65.0%
!! GGATGGCGGGGGAGTAACAG+TGG - chr1_3:3073060-3073079 None:intergenic 65.0%
TCCAACAGGTGCGGATGGCG+GGG - chr1_3:3073072-3073091 None:intergenic 65.0%
GTCCAACAGGTGCGGATGGC+GGG - chr1_3:3073073-3073092 None:intergenic 65.0%
GGTCCAACAGGTGCGGATGG+CGG - chr1_3:3073074-3073093 None:intergenic 65.0%
GGGCGAAGTCCAGCAACAGC+AGG - chr1_3:3073119-3073138 None:intergenic 65.0%
GGCAAGGCGGAGGAAGTTGC+AGG - chr1_3:3073140-3073159 None:intergenic 65.0%
GCCATAAGCAGGCAAGGCGG+AGG - chr1_3:3073150-3073169 None:intergenic 65.0%
CAGGTCAGCCCCAATCTCCG+TGG + chr1_3:3073600-3073619 Msa0097270:CDS 65.0%
! CTTGGTGGCCGACCTGCAGT+AGG - chr1_3:3074246-3074265 None:intergenic 65.0%
CTACTGCAGGTCGGCCACCA+AGG + chr1_3:3074244-3074263 Msa0097270:CDS 65.0%
TGCAGGTCGGCCACCAAGGA+CGG + chr1_3:3074248-3074267 Msa0097270:CDS 65.0%
GCATCGCTCTTCTGGGCCAG+TGG - chr1_3:3075247-3075266 None:intergenic 65.0%
CCCCGCAAAGGCCTAGAGAC+TGG + chr1_3:3080879-3080898 Msa0097270:CDS 65.0%
GGTGGTTGTGCTTCCCGAGC+AGG - chr1_3:3080968-3080987 None:intergenic 65.0%
GGCGGGGGAGTAACAGTGGC+AGG - chr1_3:3073056-3073075 None:intergenic 70.0%
! CCAACAGGTGCGGATGGCGG+GGG - chr1_3:3073071-3073090 None:intergenic 70.0%
GGGACAGCAGCCGTCCTTGG+TGG - chr1_3:3074261-3074280 None:intergenic 70.0%
GGAGGGACAGCAGCCGTCCT+TGG - chr1_3:3074264-3074283 None:intergenic 70.0%
CCCCCGCCATCCGCACCTGT+TGG + chr1_3:3073068-3073087 Msa0097270:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3072632 3081130 3072632 ID=Msa0097270;Name=Msa0097270
chr1_3 mRNA 3072632 3081130 3072632 ID=Msa0097270-mRNA-1;Parent=Msa0097270;Name=Msa0097270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.6|0.72|0.90|1|1|11|16|866
chr1_3 exon 3072632 3072712 3072632 ID=Msa0097270-mRNA-1:exon:840;Parent=Msa0097270-mRNA-1
chr1_3 exon 3072879 3073737 3072879 ID=Msa0097270-mRNA-1:exon:841;Parent=Msa0097270-mRNA-1
chr1_3 exon 3073885 3074094 3073885 ID=Msa0097270-mRNA-1:exon:842;Parent=Msa0097270-mRNA-1
chr1_3 exon 3074193 3074422 3074193 ID=Msa0097270-mRNA-1:exon:843;Parent=Msa0097270-mRNA-1
chr1_3 exon 3074515 3074565 3074515 ID=Msa0097270-mRNA-1:exon:844;Parent=Msa0097270-mRNA-1
chr1_3 exon 3075607 3075705 3075607 ID=Msa0097270-mRNA-1:exon:845;Parent=Msa0097270-mRNA-1
chr1_3 exon 3075962 3076076 3075962 ID=Msa0097270-mRNA-1:exon:846;Parent=Msa0097270-mRNA-1
chr1_3 exon 3077017 3077085 3077017 ID=Msa0097270-mRNA-1:exon:847;Parent=Msa0097270-mRNA-1
chr1_3 exon 3078262 3078619 3078262 ID=Msa0097270-mRNA-1:exon:848;Parent=Msa0097270-mRNA-1
chr1_3 exon 3079459 3079582 3079459 ID=Msa0097270-mRNA-1:exon:849;Parent=Msa0097270-mRNA-1
chr1_3 exon 3080710 3081130 3080710 ID=Msa0097270-mRNA-1:exon:850;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3072632 3072712 3072632 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3072879 3073737 3072879 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3073885 3074094 3073885 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3074193 3074422 3074193 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3074515 3074565 3074515 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3075607 3075705 3075607 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3075962 3076076 3075962 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3077017 3077085 3077017 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3078262 3078619 3078262 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3079459 3079582 3079459 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 CDS 3080710 3081114 3080710 ID=Msa0097270-mRNA-1:cds;Parent=Msa0097270-mRNA-1
chr1_3 three_prime_UTR 3081115 3081130 3081115 ID=Msa0097270-mRNA-1:three_prime_utr;Parent=Msa0097270-mRNA-1
Gene Sequence

>Msa0097270

ATGCTTTTTTCCGTCGTGCCGATTTGGATTGCGACGGTCGTATCAGCGGCGTTGAAGCCGTCTCCTTCTTCCAAGGTTCCGATTTTGAAATTCGCAAACAAAAATCAAAGTGGTTTCTTAGGTCGTGAAGAGTTCTACAATGCACCTAAACTTGTCACGGTTGCACAGAACAAGCACGACCTCACTCCTGAAATAGTCTACAGTGCATTGTATGGTACAGCTGCATCTATGATTCCTGCTCCTCAGATCAATTTCCCTGCCACTGTTACTCCCCCGCCATCCGCACCTGTTGGACCATTTCCAAATCAAAACTACTTTCCTGCTGTTGCTGGACTTCGCCCTGCAACTTCCTCCGCCTTGCCTGCTTATGGCAACATGGCTGGAGGAGGACCTCTCCAACGACCACACGTTAGAGGAACTAGTCCTACTGCTTCAACTCAGGAGGAGTTTGGTTTTGCAATTACATCATCTGCTTTAACTGTTGCACCCCCCACATGGCCTACACAATCACAATATCCTACCTCTGTCAATGGTATTGTTGCTTCTGATTCATTTTTCAGAGGAGGGGATTTTTTCTCAGCCACCTCATCTCAGCCCAACCAAGATTCTTCTCCACGAGGATTTTCATCTGCCATTCTTCCTGTATCTGGAGGGAACCAGAGTTCTATTAGGACCACCACCTCTGATTCTTTGCAGAGCTCACTTGCTACTCACTCTGTTCAGCAGAACCAGCATGCCTCCATTCAGGCACCTAATATGCACAGTTTGCCTGGACTTTCAGTCAGATTGCAGGATTCTGCGTCAGGTCAGCCCCAATCTCCGTGGCCAAGAATGACTCAGAAATATATGAATATATTCATGGAAGTAGACAAGGATAGAGATGGGAAAATCACAAGGGAACAGGCGATGGACATGTTTCTTAGTTGGGCATTACCAAGAGAGATTTTGAAGCAGGTCTGGGACCTATCCGATCAAGATAATGATAGCATGCTTTCTCTCAATGAGTTTTGTATTGCATTGCACCTAATGGAGCGACACAGGGAGGGACATGCTCTTCCAGCCGTACTTCCAAATAACATTCTTCTTGATTTACTGACTAGTGGTCAACCTGCCAATCTCCTTAGTCCTTTAACTTGGGGAAATCAGTCAGGTGTTCAACATCAGCAAGTGATGACTGGATCTGGGGCTCGACATGTCAACCCTACTGCAGGTCGGCCACCAAGGACGGCTGCTGTCCCTCCATCTGACGAAGGACCTCAGAACAAGCAGCAGAAATCCAAAATTCCAGTCATGGAGAAGCATCTCATAAATCAACTGAGTTCAGATGAGCAAACTTCAATTAACTCGAAGTTTCAAGAAGCAACAGAAGCCGATAAGAAGGAGGTTCTAGCGCCTTTGTTGAGGATTGAACCTCCCTCTGACAAAATCGCCGTAGAGATTCTAGCAAAGAAATATGAAGATAAATATAAGCAAGTTGGAGATGTATCATCCAAGTTGATAACCGAGGAAGCCACATTCCCTGACATACAGGTCCGTGCTGATCAAATCAATTCTATCCTTGATGAACTGGTGAAATCTCTAAATGAACTGTGCAAGAAGTATGGATTACGTGCAAAACCCACGACATTAGTAGAGCTACCTTTTGGCTGGCAACCTGGTATCCAAGAAGGAGCTGCTGATTGGGATGAGGATTGGGACAAGCTTGAAGATAAAGAATTTGCTCCTGTCAAAGAATACACTCTTGACGTGCAAAGCACCATAGCACCTCCAAAACAAAAGCAACCAAAGGTTGTGAACACAAAAGCTTTGGATATTGACAGTCCAAAATTTGTAGCGTCGCCTAAGAGTGATGATAAGTCAGAAAAATCTCAGACTACAAATGAACAAGGAGTAGGCAACGGATCTGTTTTTAATAAAAGCGATGATGGGTCTGCAAAAAGTGCTCCTAACCGTCCATTTGCAAGCAGTACTATCGGAAGTCCACATAGGGGCTTTGTTCATTCTGACATTCGAAAGACTTCTGGTGAAGATAGCTCACCCCGTAATCAAGATGACACCCAAGAAACCCAAAGTGATCATGGTGGTGAGAAGTCTGTGTTTTCTGAAGAACGAGTTTTTGATGAACCTAATTGGGGAACCTTCGACACAAATGATGATATCGATTCAGTTTGGGGATTCAATGCCAGTAGCAAAGAGGAGAGAGAGCTGGATGGAGCTGGAGACAACTATTTCTTTAGTTCTGGAGACCTGGGCCACAACCCCATTAAAACATCTTCACCACAGGCTGGTGATCTCTTCCTGAAGACCAGTGGTTTCAGTTTTGATGATTCTGTTCCAAGCACCCCACTTTTCAGCTCAAGCAGTTCCCCGCAAAGGCCTAGAGACTGGTTGGAGAACACTTTTGACTTTTCAAGATTTGATTCATTTAGCACACACGATAATGTATCTTTACCTGCTCGGGAAGCACAACCACCAGTAAGTTTTGATTCTGTCCGCAGTAGTGCGAATTTTGATCATGGTTTTCTTGCTTTTGATGACTCGGATCTCTTTGGCTCTGGGCCTTTTAGGACTTCATTAGAGAGTCAAACTCCTAGAAAATGA
Protein sequence

>Msa0097270

MLFSVVPIWIATVVSAALKPSPSSKVPILKFANKNQSGFLGREEFYNAPKLVTVAQNKHDLTPEIVYSALYGTAASMIPAPQINFPATVTPPPSAPVGPFPNQNYFPAVAGLRPATSSALPAYGNMAGGGPLQRPHVRGTSPTASTQEEFGFAITSSALTVAPPTWPTQSQYPTSVNGIVASDSFFRGGDFFSATSSQPNQDSSPRGFSSAILPVSGGNQSSIRTTTSDSLQSSLATHSVQQNQHASIQAPNMHSLPGLSVRLQDSASGQPQSPWPRMTQKYMNIFMEVDKDRDGKITREQAMDMFLSWALPREILKQVWDLSDQDNDSMLSLNEFCIALHLMERHREGHALPAVLPNNILLDLLTSGQPANLLSPLTWGNQSGVQHQQVMTGSGARHVNPTAGRPPRTAAVPPSDEGPQNKQQKSKIPVMEKHLINQLSSDEQTSINSKFQEATEADKKEVLAPLLRIEPPSDKIAVEILAKKYEDKYKQVGDVSSKLITEEATFPDIQVRADQINSILDELVKSLNELCKKYGLRAKPTTLVELPFGWQPGIQEGAADWDEDWDKLEDKEFAPVKEYTLDVQSTIAPPKQKQPKVVNTKALDIDSPKFVASPKSDDKSEKSQTTNEQGVGNGSVFNKSDDGSAKSAPNRPFASSTIGSPHRGFVHSDIRKTSGEDSSPRNQDDTQETQSDHGGEKSVFSEERVFDEPNWGTFDTNDDIDSVWGFNASSKEERELDGAGDNYFFSSGDLGHNPIKTSSPQAGDLFLKTSGFSFDDSVPSTPLFSSSSSPQRPRDWLENTFDFSRFDSFSTHDNVSLPAREAQPPVSFDSVRSSANFDHGFLAFDDSDLFGSGPFRTSLESQTPRK*