AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 131 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCAGAATTTACTTATTT+TGG 0.090668 1_3:+3324595 Msa0097510:CDS
TTTGAGTTCAAAATAGAAAT+TGG 0.169684 1_3:-3328050 None:intergenic
TAAAGTTATAGCCGAAAATT+TGG 0.204148 1_3:-3328590 None:intergenic
TTGATTAATACCCAGGAATT+AGG 0.220885 1_3:+3330020 Msa0097510:intron
GAAAATAATCATGTTCCTTA+TGG 0.222734 1_3:+3329180 Msa0097510:three_prime_UTR
TTAGGAGCATGAATGATATT+TGG 0.255200 1_3:+3328514 Msa0097510:three_prime_UTR
TTGAGTTCAAAATAGAAATT+GGG 0.299650 1_3:-3328049 None:intergenic
AAAAGTCATTGGAGAATATA+AGG 0.300611 1_3:+3330464 Msa0097510:three_prime_UTR
AAGGTAATTGAATCTATAAT+TGG 0.301722 1_3:-3328445 None:intergenic
CAATTACCTTAGCGAGAGTA+TGG 0.302276 1_3:+3328458 Msa0097510:three_prime_UTR
AAAACAGTACTTACTAATTA+AGG 0.303922 1_3:-3329268 None:intergenic
TCATAGACCATTGTAGTTTC+AGG 0.304997 1_3:-3323931 None:intergenic
ATTATTGAACATTCAAAATC+TGG 0.315253 1_3:+3330516 Msa0097510:three_prime_UTR
TCTACGATGGCCGAGATCTA+AGG 0.330503 1_3:-3323141 None:intergenic
ATAAGGAATTGGAGAATATA+AGG 0.339207 1_3:+3330481 Msa0097510:three_prime_UTR
GCAATGGATATCGTCGAGTT+TGG 0.346138 1_3:+3329361 Msa0097510:three_prime_UTR
AAATGACACTTCCACCATTT+CGG 0.346295 1_3:+3323291 Msa0097510:five_prime_UTR
AGAATGCACATGGGAATATA+AGG 0.348953 1_3:+3330841 Msa0097510:three_prime_UTR
CAGGGTTTGAAAGGTCTTCA+TGG 0.349975 1_3:-3328840 None:intergenic
AATGGTGGAAGTGTCATTTC+CGG 0.359886 1_3:-3323287 None:intergenic
ACTTTCTCTTATTACTCAAA+TGG 0.359935 1_3:+3328072 Msa0097510:three_prime_UTR
GATTGGCAGAATTTATGAAT+AGG 0.360158 1_3:+3327552 Msa0097510:intron
TAGTATTGTTTAATCTCATT+TGG 0.360379 1_3:+3328252 Msa0097510:three_prime_UTR
GTTCTAAACTACTTGGGATA+AGG 0.364368 1_3:+3325354 Msa0097510:exon
GGTACGGCGATGATGATTTC+CGG 0.373209 1_3:-3323266 None:intergenic
CGCAACGTAGCTCATTCATT+TGG 0.373283 1_3:-3328549 None:intergenic
CTTTCTCTTATTACTCAAAT+GGG 0.373503 1_3:+3328073 Msa0097510:three_prime_UTR
TTCCTTATGGAATTCATCAT+AGG 0.374364 1_3:+3329193 Msa0097510:three_prime_UTR
AATTTATGAATAGGCAATAA+AGG 0.379871 1_3:+3327561 Msa0097510:three_prime_UTR
TTAGAGAGGAATAAATCATT+TGG 0.384407 1_3:-3328991 None:intergenic
TTAGCGAGAGTATGGATTAT+AGG 0.384688 1_3:+3328466 Msa0097510:three_prime_UTR
AGGATGACGTTGGAGTGTTT+TGG 0.385577 1_3:+3330040 Msa0097510:three_prime_UTR
GATACTGTTCTTGACAAAAT+TGG 0.388938 1_3:+3327592 Msa0097510:three_prime_UTR
AATGTTAGCTTCCTCAGTTT+AGG 0.390364 1_3:+3328307 Msa0097510:three_prime_UTR
GATATAGAGGTGGAAGGAAA+TGG 0.396236 1_3:+3330632 Msa0097510:three_prime_UTR
ATAACAACGTTATTCCGAAA+TGG 0.405723 1_3:-3323305 None:intergenic
TTCTAAACTACTTGGGATAA+GGG 0.406045 1_3:+3325355 Msa0097510:exon
CATTGGAGAATATAAGGAAT+TGG 0.413486 1_3:+3330470 Msa0097510:three_prime_UTR
GTTCTTGGTTCTAAACTACT+TGG 0.415404 1_3:+3325347 Msa0097510:exon
TTATAGGTGGGAGCCTCTAT+AGG 0.415866 1_3:+3330768 Msa0097510:three_prime_UTR
ATACAGAACGGATGGACATT+TGG 0.427131 1_3:+3327623 Msa0097510:three_prime_UTR
CATAACAGCTGTTCATCCTA+TGG 0.429544 1_3:-3328723 None:intergenic
AATGAGCTACGTTGCGCAGC+TGG 0.431539 1_3:+3328556 Msa0097510:three_prime_UTR
AAAGTGATTACTAAAATTAG+TGG 0.434244 1_3:-3328748 None:intergenic
TAGAGAGGAATAAATCATTT+GGG 0.434888 1_3:-3328990 None:intergenic
CTATGAAACTTGTTGTTGAA+TGG 0.436799 1_3:+3323948 Msa0097510:exon
AATAACGTTGTTATAAAACT+TGG 0.446665 1_3:+3323314 Msa0097510:five_prime_UTR
GAATTATACATCAAGCTTGA+TGG 0.451737 1_3:-3329228 None:intergenic
GTAAGAAAAGTATTGATGAC+AGG 0.454719 1_3:-3328859 None:intergenic
GTGTAGTAGAACAATTTGTA+TGG 0.458401 1_3:+3330579 Msa0097510:three_prime_UTR
TTTGGCAGTGATCTCCCTGC+TGG 0.470036 1_3:+3330058 Msa0097510:three_prime_UTR
TCTACAACCTTCGTCATGTA+AGG 0.475382 1_3:+3323595 Msa0097510:five_prime_UTR
AAGGGCAAGAATTTCTATAC+TGG 0.475444 1_3:+3325373 Msa0097510:three_prime_UTR
AATAGATGTGATGGGTCAAA+AGG 0.477233 1_3:+3329061 Msa0097510:three_prime_UTR
TATTGATGACAGGGTTTGAA+AGG 0.482079 1_3:-3328849 None:intergenic
TGTTAAATATATGAAAATAG+TGG 0.484318 1_3:-3328950 None:intergenic
GGTGTCAAAACTCACTTCTA+CGG 0.485790 1_3:+3327836 Msa0097510:three_prime_UTR
ATAACAGCTGTTCATCCTAT+GGG 0.489395 1_3:-3328722 None:intergenic
ATGAAGAGGTGGAAAGGAAT+GGG 0.490083 1_3:+3330547 Msa0097510:three_prime_UTR
ATAAACAATACAGCCTATAG+AGG 0.494322 1_3:-3330781 None:intergenic
TATCGTCGAGTTTGGAGAGT+TGG 0.494998 1_3:+3329369 Msa0097510:three_prime_UTR
CATGAAGAGGTGGAAAGGAA+TGG 0.498506 1_3:+3330546 Msa0097510:three_prime_UTR
TTCATGTAATAATGAGGTAA+TGG 0.500237 1_3:+3327893 Msa0097510:three_prime_UTR
GACATTCTTATGACTTTCAA+AGG 0.502887 1_3:+3323897 Msa0097510:five_prime_UTR
CACATCTATTAGAACTGCTT+AGG 0.504946 1_3:-3329048 None:intergenic
TCACACATCTTCTACAAACC+TGG 0.505493 1_3:-3328791 None:intergenic
ATCCTATGATGAATTCCATA+AGG 0.506150 1_3:-3329195 None:intergenic
AGCAGTTCTAATAGATGTGA+TGG 0.507402 1_3:+3329052 Msa0097510:three_prime_UTR
TGATTTGCTTTCTATTACCT+AGG 0.508599 1_3:-3330873 None:intergenic
AAAATATTAAAAGAATGCAC+AGG 0.513232 1_3:+3328644 Msa0097510:three_prime_UTR
GTGTCAAAACTCACTTCTAC+GGG 0.517111 1_3:+3327837 Msa0097510:three_prime_UTR
AAAATTTGGTCTCAACATGA+AGG 0.519523 1_3:+3328375 Msa0097510:three_prime_UTR
TTGCTTTCTATTACCTAGGT+AGG 0.523323 1_3:-3330869 None:intergenic
CTACGATGGCCGAGATCTAA+GGG 0.528356 1_3:-3323140 None:intergenic
TTCTTGGTTCTAAACTACTT+GGG 0.530098 1_3:+3325348 Msa0097510:exon
ATTACCTCATTATTACATGA+AGG 0.534261 1_3:-3327891 None:intergenic
ATAAGACACCTCAAGTAAAG+AGG 0.537948 1_3:+3327673 Msa0097510:three_prime_UTR
TTTGCTTTGTAACTTAGCAA+TGG 0.541063 1_3:+3329345 Msa0097510:three_prime_UTR
TTTCTGGTTGCCGAAAATCC+AGG 0.541781 1_3:+3328773 Msa0097510:three_prime_UTR
GATTACCACTTACAAAATCA+AGG 0.544502 1_3:+3324619 Msa0097510:CDS
TCATCTTCTCCCTTAGATCT+CGG 0.550553 1_3:+3323131 Msa0097510:five_prime_UTR
AGCTCAACCATGGAGTTTAG+CGG 0.551609 1_3:+3323568 Msa0097510:five_prime_UTR
TGAGTTCAAAATAGAAATTG+GGG 0.552659 1_3:-3328048 None:intergenic
AGGGGTTACCTCTTTACTTG+AGG 0.552898 1_3:-3327681 None:intergenic
AGGTGGAAGGAAATGGACAT+TGG 0.556042 1_3:+3330639 Msa0097510:three_prime_UTR
TCAATGACAAGGTGATATAG+AGG 0.560176 1_3:+3330619 Msa0097510:three_prime_UTR
CCAAAATAAGTAAATTCTGA+AGG 0.562263 1_3:-3324595 None:intergenic
GTCACTTTCAAGCTCAACCA+TGG 0.563416 1_3:+3323558 Msa0097510:five_prime_UTR
AGATCTAAGGGAGAAGATGA+TGG 0.568891 1_3:-3323128 None:intergenic
GGAAATCATCATCGCCGTAC+CGG 0.570130 1_3:+3323268 Msa0097510:five_prime_UTR
ATCTGGACATAAACATGAAG+AGG 0.572458 1_3:+3330533 Msa0097510:three_prime_UTR
TTTCAAAATGAGATCTACGA+TGG 0.574090 1_3:-3323154 None:intergenic
AAATATTGAAAGAATGCACA+TGG 0.575958 1_3:+3330831 Msa0097510:three_prime_UTR
TGTAGTAGAACAATTTGTAT+GGG 0.577584 1_3:+3330580 Msa0097510:three_prime_UTR
AGATCTGCCGCTAAACTCCA+TGG 0.584643 1_3:-3323575 None:intergenic
GTGCTTGTTTAAATTCATTG+TGG 0.587460 1_3:+3329299 Msa0097510:three_prime_UTR
TTATACATCAAGCTTGATGG+AGG 0.587997 1_3:-3329225 None:intergenic
TATAATCCATACTCTCGCTA+AGG 0.589766 1_3:-3328464 None:intergenic
TAATGTTGAGACTTAAACTG+AGG 0.591295 1_3:-3328145 None:intergenic
AGTGCATAACACTGCAACGA+AGG 0.594053 1_3:+3330667 Msa0097510:three_prime_UTR
TAAGAAAAGTATTGATGACA+GGG 0.594490 1_3:-3328858 None:intergenic
ATAAACATGAAGAGGTGGAA+AGG 0.597495 1_3:+3330541 Msa0097510:three_prime_UTR
GCAGTTCTAATAGATGTGAT+GGG 0.602273 1_3:+3329053 Msa0097510:three_prime_UTR
CAAGGTGATATAGAGGTGGA+AGG 0.605341 1_3:+3330626 Msa0097510:three_prime_UTR
ACAACGTTATTCCGAAATGG+TGG 0.609182 1_3:-3323302 None:intergenic
TCGGCCTTCATGTAATAATG+AGG 0.611325 1_3:+3327887 Msa0097510:three_prime_UTR
TGGAAGTGTCATTTCCGGTA+CGG 0.612360 1_3:-3323282 None:intergenic
GAAGGAAATGGACATTGGAA+AGG 0.613938 1_3:+3330644 Msa0097510:three_prime_UTR
AAATATATGAAAATAGTGGA+AGG 0.614917 1_3:-3328946 None:intergenic
GGCGATGATGATTTCCGGCA+CGG 0.615206 1_3:-3323261 None:intergenic
CTATCTCTAACTGATTCGAA+TGG 0.617905 1_3:+3323991 Msa0097510:CDS
TGGACATAAACATGAAGAGG+TGG 0.619429 1_3:+3330536 Msa0097510:three_prime_UTR
AAATATTAAAAGAATGCACA+GGG 0.622258 1_3:+3328645 Msa0097510:three_prime_UTR
TGTGCTAGATACAGAACGGA+TGG 0.630437 1_3:+3327615 Msa0097510:three_prime_UTR
ATATAAGGTACATCCTACCT+AGG 0.631380 1_3:+3330856 Msa0097510:three_prime_UTR
CCCAGGAATTAGGATGACGT+TGG 0.632457 1_3:+3330030 Msa0097510:intron
GAAGATGAATACGAACGTGA+AGG 0.637861 1_3:+3328488 Msa0097510:three_prime_UTR
TATACATCAAGCTTGATGGA+GGG 0.641926 1_3:-3329224 None:intergenic
AACAGTGCCTGAAACTACAA+TGG 0.642952 1_3:+3323924 Msa0097510:five_prime_UTR
TGATGAAGATTTCAATGACA+AGG 0.646401 1_3:+3330608 Msa0097510:three_prime_UTR
ATGACAAGGTGATATAGAGG+TGG 0.657478 1_3:+3330622 Msa0097510:three_prime_UTR
TTGGTGTGCTAGATACAGAA+CGG 0.660279 1_3:+3327611 Msa0097510:three_prime_UTR
AAGGAACTAAATGCAAAGAG+AGG 0.664904 1_3:-3328927 None:intergenic
ACAATGTAAATTGATTAGAG+AGG 0.669521 1_3:-3329005 None:intergenic
AAAGTGACCTTACATGACGA+AGG 0.681826 1_3:-3323602 None:intergenic
AATATTGAAAGAATGCACAT+GGG 0.687541 1_3:+3330832 Msa0097510:three_prime_UTR
TAACAGCTGTTCATCCTATG+GGG 0.698996 1_3:-3328721 None:intergenic
TGATGCTGAGACCTAAACTG+AGG 0.705148 1_3:-3328318 None:intergenic
GATGATGGTACTGACCAGCA+GGG 0.714852 1_3:-3330072 None:intergenic
GATGATGATTTCCGGCACGG+TGG 0.742976 1_3:-3323258 None:intergenic
AATATTAAAAGAATGCACAG+GGG 0.797274 1_3:+3328646 Msa0097510:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAAATAAAATA+AGG + chr1_3:3325188-3325207 Msa0097510:intron 0.0%
!!! TTTCATTTTTGTTTTAATTA+AGG + chr1_3:3323415-3323434 Msa0097510:intron 10.0%
!! GTAAAAAATTTACTATAAAT+AGG - chr1_3:3324383-3324402 None:intergenic 10.0%
!! AATAATTCTAATCAAAATAA+TGG + chr1_3:3324927-3324946 Msa0097510:intron 10.0%
!!! ACTTAATTTTTTTTGATAAT+TGG + chr1_3:3325213-3325232 Msa0097510:intron 10.0%
!!! TAATTATTTTCAAAATGTAA+AGG - chr1_3:3325750-3325769 None:intergenic 10.0%
!! AATACTAAAAATTTCAATAT+AGG - chr1_3:3328239-3328258 None:intergenic 10.0%
!!! AAAAAGTTATATTTCTAATT+AGG + chr1_3:3329152-3329171 Msa0097510:three_prime_UTR 10.0%
!!! GTTTAAGTTTAAATATAATT+AGG + chr1_3:3330190-3330209 Msa0097510:intron 10.0%
!!! TTTTTATTTTTTTGCTTTAT+AGG + chr1_3:3330752-3330771 Msa0097510:three_prime_UTR 10.0%
!!! AAATATCAAAGAATAGTTTT+TGG + chr1_3:3323710-3323729 Msa0097510:intron 15.0%
!!! AATGTATTATGAACATTTTT+AGG + chr1_3:3323860-3323879 Msa0097510:intron 15.0%
!! ATATTGGATTATAAAATCAA+AGG + chr1_3:3324354-3324373 Msa0097510:intron 15.0%
!!! AAAAGTGAATTTTAAGTTAT+AGG - chr1_3:3324425-3324444 None:intergenic 15.0%
!! AAAAATTGAAATACATGTTT+AGG - chr1_3:3324988-3325007 None:intergenic 15.0%
!!! CTAATTTGTTTAATTGATAT+TGG - chr1_3:3325673-3325692 None:intergenic 15.0%
!!! CTTTTTAACATATCATTTTA+TGG - chr1_3:3326321-3326340 None:intergenic 15.0%
!!! TGTATCTTTTAATACTTTTT+TGG - chr1_3:3327445-3327464 None:intergenic 15.0%
!!! AAAAAGTATTAAAAGATACA+AGG + chr1_3:3327445-3327464 Msa0097510:intron 15.0%
!!! ATTATGTTTTAACATCAAAA+GGG + chr1_3:3327800-3327819 Msa0097510:three_prime_UTR 15.0%
!!! AGAATAAAACTTTTTTTTTG+AGG - chr1_3:3327958-3327977 None:intergenic 15.0%
!!! AAGTTTTATTCTTTCTTTAT+TGG + chr1_3:3327966-3327985 Msa0097510:three_prime_UTR 15.0%
!! TGTTAAATATATGAAAATAG+TGG - chr1_3:3328953-3328972 None:intergenic 15.0%
!!! AATATTTTTAAAGAATGCAT+AGG + chr1_3:3329546-3329565 Msa0097510:intron 15.0%
!!! ATATTTTTAAAGAATGCATA+GGG + chr1_3:3329547-3329566 Msa0097510:intron 15.0%
!!! GAAACAGAATATTATTTTAT+TGG - chr1_3:3329695-3329714 None:intergenic 15.0%
!! TGAATATGAAAATAAAAGAA+TGG + chr1_3:3329889-3329908 Msa0097510:intron 15.0%
!! AAATAAATTTCATCAAGATT+TGG - chr1_3:3329980-3329999 None:intergenic 15.0%
!! ATACAAAAAAAAAAAGTCAT+TGG + chr1_3:3330453-3330472 Msa0097510:three_prime_UTR 15.0%
!! AATAACGTTGTTATAAAACT+TGG + chr1_3:3323314-3323333 Msa0097510:five_prime_UTR 20.0%
!! CACATATCATAAACAAATAT+TGG - chr1_3:3323797-3323816 None:intergenic 20.0%
!! TGGATTACTTAATTATGATT+TGG + chr1_3:3324036-3324055 Msa0097510:intron 20.0%
!! CTTTCTTAAGTTTATTCTAA+AGG - chr1_3:3324307-3324326 None:intergenic 20.0%
!! GGAAAATAGAGAATAAAATT+TGG + chr1_3:3324527-3324546 Msa0097510:intron 20.0%
!!! TTTTAATGAATAGCCAATAA+TGG - chr1_3:3325096-3325115 None:intergenic 20.0%
!!! TTGATATTGGTAGTAAATTT+AGG - chr1_3:3325660-3325679 None:intergenic 20.0%
!! ATTAATCTATGAGTATGATT+GGG - chr1_3:3326046-3326065 None:intergenic 20.0%
!! AATTAATCTATGAGTATGAT+TGG - chr1_3:3326047-3326066 None:intergenic 20.0%
!! ATCATACTCATAGATTAATT+TGG + chr1_3:3326047-3326066 Msa0097510:intron 20.0%
!! TCTTATGAATTGAAAAAGTT+AGG + chr1_3:3326163-3326182 Msa0097510:intron 20.0%
!! TTTATAACATCTTAATGAAG+AGG - chr1_3:3326203-3326222 None:intergenic 20.0%
!! ACACAAATCTAAATTGATAT+AGG + chr1_3:3326735-3326754 Msa0097510:intron 20.0%
!! GAACTTTGATATTAAATGAA+AGG - chr1_3:3326828-3326847 None:intergenic 20.0%
!! AAATTACACTTACCTTAATA+TGG + chr1_3:3327255-3327274 Msa0097510:intron 20.0%
!! AATTTATGAATAGGCAATAA+AGG + chr1_3:3327561-3327580 Msa0097510:three_prime_UTR 20.0%
!!! GATTATGTTTTAACATCAAA+AGG + chr1_3:3327799-3327818 Msa0097510:intron 20.0%
!!! CAAAAGGGAATTTTTTTAAT+TGG + chr1_3:3327815-3327834 Msa0097510:three_prime_UTR 20.0%
!! TTGAGTTCAAAATAGAAATT+GGG - chr1_3:3328052-3328071 None:intergenic 20.0%
!!! TTTGAGTTCAAAATAGAAAT+TGG - chr1_3:3328053-3328072 None:intergenic 20.0%
!! TTTAACAGTAAAAATGAGTT+TGG - chr1_3:3328195-3328214 None:intergenic 20.0%
!! TAGTATTGTTTAATCTCATT+TGG + chr1_3:3328252-3328271 Msa0097510:three_prime_UTR 20.0%
!! AAGGTAATTGAATCTATAAT+TGG - chr1_3:3328448-3328467 None:intergenic 20.0%
!! AAAATATTAAAAGAATGCAC+AGG + chr1_3:3328644-3328663 Msa0097510:three_prime_UTR 20.0%
!! AAATATTAAAAGAATGCACA+GGG + chr1_3:3328645-3328664 Msa0097510:three_prime_UTR 20.0%
!! AAAGTGATTACTAAAATTAG+TGG - chr1_3:3328751-3328770 None:intergenic 20.0%
!!! TTAGTAATCACTTTATTTTC+TGG + chr1_3:3328757-3328776 Msa0097510:three_prime_UTR 20.0%
!!! AAATATATGAAAATAGTGGA+AGG - chr1_3:3328949-3328968 None:intergenic 20.0%
!! AAAACAGTACTTACTAATTA+AGG - chr1_3:3329271-3329290 None:intergenic 20.0%
!!! AATTTTAAAAAGCTAAGTGT+AGG + chr1_3:3329627-3329646 Msa0097510:intron 20.0%
!!! TCTTTTATTTTCATATTCAG+AGG - chr1_3:3329888-3329907 None:intergenic 20.0%
!! AAGATATTATCATACAAAGT+TGG - chr1_3:3330162-3330181 None:intergenic 20.0%
!! AAGAAATAAATTGTGTACAA+AGG - chr1_3:3330330-3330349 None:intergenic 20.0%
!! ATTATTGAACATTCAAAATC+TGG + chr1_3:3330516-3330535 Msa0097510:three_prime_UTR 20.0%
!!! TTATTTTTTTGCTTTATAGG+TGG + chr1_3:3330755-3330774 Msa0097510:three_prime_UTR 20.0%
!!! TATTTTTTTGCTTTATAGGT+GGG + chr1_3:3330756-3330775 Msa0097510:three_prime_UTR 20.0%
!!! AATCACGATCTGAATTTTTT+CGG + chr1_3:3323232-3323251 Msa0097510:five_prime_UTR 25.0%
! AAAACAATGGATCTAAAGAA+TGG - chr1_3:3323471-3323490 None:intergenic 25.0%
! ATAGGCTGTAAAAAAAACAA+TGG - chr1_3:3323484-3323503 None:intergenic 25.0%
!!! GTATCTTGTTGAATTTGTTT+TGG + chr1_3:3323816-3323835 Msa0097510:intron 25.0%
!!! ATTTATGGACTTCTAGAATA+TGG + chr1_3:3324016-3324035 Msa0097510:intron 25.0%
! AGATGAAAAATGAAGTAAGA+AGG - chr1_3:3324239-3324258 None:intergenic 25.0%
! TAACTCTTGGCATAAATATT+TGG - chr1_3:3324331-3324350 None:intergenic 25.0%
! AATCCAATATCAATAACTCT+TGG - chr1_3:3324344-3324363 None:intergenic 25.0%
!! TTATTCTCTATTTTCCAGAA+TGG - chr1_3:3324523-3324542 None:intergenic 25.0%
!!! AAAATTTGGTTTTACTTTCC+AGG + chr1_3:3324541-3324560 Msa0097510:intron 25.0%
! CCAAAATAAGTAAATTCTGA+AGG - chr1_3:3324598-3324617 None:intergenic 25.0%
!! CCTTCAGAATTTACTTATTT+TGG + chr1_3:3324595-3324614 Msa0097510:CDS 25.0%
! TTCAACAAAATTGATAGAGT+TGG - chr1_3:3324747-3324766 None:intergenic 25.0%
! GTATTCCATTAAGATGAAAA+CGG + chr1_3:3324827-3324846 Msa0097510:intron 25.0%
!! GTAAGATGATACTCTAATTT+TGG + chr1_3:3324949-3324968 Msa0097510:intron 25.0%
!!! TTTTTCCTCTCTAAAATAGT+TGG + chr1_3:3325060-3325079 Msa0097510:intron 25.0%
!! TGGAAAGATTTTTCCATTAT+TGG + chr1_3:3325080-3325099 Msa0097510:intron 25.0%
! TACCTTCAATAAGTATTCAA+TGG + chr1_3:3325126-3325145 Msa0097510:intron 25.0%
! TACCATTGAATACTTATTGA+AGG - chr1_3:3325131-3325150 None:intergenic 25.0%
!!! AATTCACTGTTTTAAAACTC+TGG - chr1_3:3325252-3325271 None:intergenic 25.0%
!! TTGTGCATTTTCAGAAATAA+TGG + chr1_3:3325270-3325289 Msa0097510:intron 25.0%
!! TTCACCAACAATGATATTTT+TGG + chr1_3:3325325-3325344 Msa0097510:CDS 25.0%
! AGAACCAAAAATATCATTGT+TGG - chr1_3:3325332-3325351 None:intergenic 25.0%
!!! ACAATGATATTTTTGGTTCT+TGG + chr1_3:3325332-3325351 Msa0097510:CDS 25.0%
! TTTCATATTCAAACAAAGCA+AGG + chr1_3:3325605-3325624 Msa0097510:intron 25.0%
! TATTTGTCTCTAATTTCTGT+TGG + chr1_3:3325907-3325926 Msa0097510:intron 25.0%
! ATTTGTCTCTAATTTCTGTT+GGG + chr1_3:3325908-3325927 Msa0097510:intron 25.0%
! TATCATTTGCTTTCTTAATG+AGG + chr1_3:3326249-3326268 Msa0097510:intron 25.0%
! ATCATTTGCTTTCTTAATGA+GGG + chr1_3:3326250-3326269 Msa0097510:intron 25.0%
! AGAAATTATCATGCAAAACT+GGG - chr1_3:3326398-3326417 None:intergenic 25.0%
! AAGAAATTATCATGCAAAAC+TGG - chr1_3:3326399-3326418 None:intergenic 25.0%
!!! CTTATTCACTTTTTTTTTCC+TGG + chr1_3:3326541-3326560 Msa0097510:intron 25.0%
!! TACATTATCAGAAAAAGTGT+TGG + chr1_3:3326658-3326677 Msa0097510:intron 25.0%
!!! GATTGTGTTATTTTCCTTTT+AGG + chr1_3:3326888-3326907 Msa0097510:intron 25.0%
!!! ATTTTAATCACCACAATCAA+TGG + chr1_3:3326943-3326962 Msa0097510:intron 25.0%
! ATTGAAATGTGTATTTGAAC+AGG - chr1_3:3326977-3326996 None:intergenic 25.0%
! TGATAATTGACCTCTATAAA+TGG + chr1_3:3327045-3327064 Msa0097510:intron 25.0%
!!! GCAGAAAATCAATTTTAGAA+TGG - chr1_3:3327090-3327109 None:intergenic 25.0%
!!! TTGTTGTTTTGATACAACTA+AGG - chr1_3:3327281-3327300 None:intergenic 25.0%
!!! TCAAAACAACAATTTTTTGC+TGG + chr1_3:3327289-3327308 Msa0097510:intron 25.0%
! TGAACTTCTATGAATAAGTT+TGG - chr1_3:3327501-3327520 None:intergenic 25.0%
!!! TACACAACTTCATTTTTGAT+TGG + chr1_3:3327535-3327554 Msa0097510:intron 25.0%
!!! TTGGACATTTTTCTGAAAAA+AGG + chr1_3:3327642-3327661 Msa0097510:three_prime_UTR 25.0%
! AATTATGGGAGATATATAAG+GGG - chr1_3:3327702-3327721 None:intergenic 25.0%
! GAATTATGGGAGATATATAA+GGG - chr1_3:3327703-3327722 None:intergenic 25.0%
! TGAATTATGGGAGATATATA+AGG - chr1_3:3327704-3327723 None:intergenic 25.0%
! AGTTGTAGAATGTGAATTAT+GGG - chr1_3:3327716-3327735 None:intergenic 25.0%
! ATTACCTCATTATTACATGA+AGG - chr1_3:3327894-3327913 None:intergenic 25.0%
! TTCATGTAATAATGAGGTAA+TGG + chr1_3:3327893-3327912 Msa0097510:three_prime_UTR 25.0%
! TGAGTTCAAAATAGAAATTG+GGG - chr1_3:3328051-3328070 None:intergenic 25.0%
! ACTTTCTCTTATTACTCAAA+TGG + chr1_3:3328072-3328091 Msa0097510:three_prime_UTR 25.0%
! CTTTCTCTTATTACTCAAAT+GGG + chr1_3:3328073-3328092 Msa0097510:three_prime_UTR 25.0%
! TAAAGTTATAGCCGAAAATT+TGG - chr1_3:3328593-3328612 None:intergenic 25.0%
! AATATTAAAAGAATGCACAG+GGG + chr1_3:3328646-3328665 Msa0097510:three_prime_UTR 25.0%
!! TTTTTGCTGATGTTTTTCAT+GGG - chr1_3:3328699-3328718 None:intergenic 25.0%
!! ATTTTTGCTGATGTTTTTCA+TGG - chr1_3:3328700-3328719 None:intergenic 25.0%
!!! TAAGAAAAGTATTGATGACA+GGG - chr1_3:3328861-3328880 None:intergenic 25.0%
! GAAAACAAAAAAAAAGGCTT+TGG - chr1_3:3328884-3328903 None:intergenic 25.0%
! GGAAAAAAAAAACTTACACT+GGG - chr1_3:3328909-3328928 None:intergenic 25.0%
! AGGAAAAAAAAAACTTACAC+TGG - chr1_3:3328910-3328929 None:intergenic 25.0%
! TAGAGAGGAATAAATCATTT+GGG - chr1_3:3328993-3329012 None:intergenic 25.0%
! TTAGAGAGGAATAAATCATT+TGG - chr1_3:3328994-3329013 None:intergenic 25.0%
! ACAATGTAAATTGATTAGAG+AGG - chr1_3:3329008-3329027 None:intergenic 25.0%
!!! TTATTTTTGTGTTGTTCAGA+AGG - chr1_3:3329134-3329153 None:intergenic 25.0%
! GAAAATAATCATGTTCCTTA+TGG + chr1_3:3329180-3329199 Msa0097510:three_prime_UTR 25.0%
!!! GTAAGTACTGTTTTATTCTA+TGG + chr1_3:3329277-3329296 Msa0097510:three_prime_UTR 25.0%
! ATAGAAAAGGAAAACTTACA+TGG - chr1_3:3329445-3329464 None:intergenic 25.0%
! TCTATAACATCTTAATGAAG+AGG - chr1_3:3329736-3329755 None:intergenic 25.0%
! TTTCAACTGTAAAAATGAAG+AGG + chr1_3:3329806-3329825 Msa0097510:intron 25.0%
!! TTCAGTTACACATCATTTTA+TGG - chr1_3:3329853-3329872 None:intergenic 25.0%
! ATGAAAATAAAAGAATGGAG+AGG + chr1_3:3329894-3329913 Msa0097510:intron 25.0%
! AGAAATGCTAAAGAAAACAA+TGG - chr1_3:3330097-3330116 None:intergenic 25.0%
!! ATCATACTTTTCTCCAAATA+TGG + chr1_3:3330220-3330239 Msa0097510:intron 25.0%
! TCTAATATACATCCTTCTAA+TGG - chr1_3:3330256-3330275 None:intergenic 25.0%
! GGATGTATATTAGAAATGTA+AGG + chr1_3:3330262-3330281 Msa0097510:intron 25.0%
! ATGAGAAACAACAAATATGA+AGG - chr1_3:3330356-3330375 None:intergenic 25.0%
!!! GAAAAAGTATTACATGAGAA+AGG - chr1_3:3330397-3330416 None:intergenic 25.0%
! AAAAGTCATTGGAGAATATA+AGG + chr1_3:3330464-3330483 Msa0097510:three_prime_UTR 25.0%
! ATAAGGAATTGGAGAATATA+AGG + chr1_3:3330481-3330500 Msa0097510:three_prime_UTR 25.0%
! TGTAGTAGAACAATTTGTAT+GGG + chr1_3:3330580-3330599 Msa0097510:three_prime_UTR 25.0%
! AAATATTGAAAGAATGCACA+TGG + chr1_3:3330831-3330850 Msa0097510:three_prime_UTR 25.0%
! AATATTGAAAGAATGCACAT+GGG + chr1_3:3330832-3330851 Msa0097510:three_prime_UTR 25.0%
TTTCAAAATGAGATCTACGA+TGG - chr1_3:3323157-3323176 None:intergenic 30.0%
!! TTTCTTTGAGGGTTTTATAG+AGG - chr1_3:3323212-3323231 None:intergenic 30.0%
! AGATCGTGATTTTTCTTTGA+GGG - chr1_3:3323223-3323242 None:intergenic 30.0%
ATAACAACGTTATTCCGAAA+TGG - chr1_3:3323308-3323327 None:intergenic 30.0%
! GAACGATGTAGACTAATTTT+TGG + chr1_3:3323341-3323360 Msa0097510:five_prime_UTR 30.0%
AAAATAGAGGAAGAGAGAAT+AGG - chr1_3:3323502-3323521 None:intergenic 30.0%
ACAAAGATTGTGTTAGAAGT+AGG - chr1_3:3323631-3323650 None:intergenic 30.0%
GACATTCTTATGACTTTCAA+AGG + chr1_3:3323897-3323916 Msa0097510:five_prime_UTR 30.0%
!! CTATGAAACTTGTTGTTGAA+TGG + chr1_3:3323948-3323967 Msa0097510:exon 30.0%
! CTGATTCGAATGGTAATTTA+TGG + chr1_3:3324001-3324020 Msa0097510:intron 30.0%
! TTTGGTGATTTCGTGATTAT+TGG + chr1_3:3324054-3324073 Msa0097510:intron 30.0%
! TTGGTGATTTCGTGATTATT+GGG + chr1_3:3324055-3324074 Msa0097510:intron 30.0%
! TTCTAAAGGTTAGTGAAGAA+TGG - chr1_3:3324293-3324312 None:intergenic 30.0%
ATGCCAAGAGTTATTGATAT+TGG + chr1_3:3324338-3324357 Msa0097510:intron 30.0%
TAAACTGAATTATTGTGTGC+AGG + chr1_3:3324447-3324466 Msa0097510:intron 30.0%
! GAATCTCAAAAGAGTGTAAT+AGG + chr1_3:3324469-3324488 Msa0097510:intron 30.0%
AAGATGCTAATTAGCTACTA+AGG - chr1_3:3324500-3324519 None:intergenic 30.0%
GATTACCACTTACAAAATCA+AGG + chr1_3:3324619-3324638 Msa0097510:CDS 30.0%
! GATTACCTTGATTTTGTAAG+TGG - chr1_3:3324627-3324646 None:intergenic 30.0%
! AATTTTGTTGAACAACACGT+TGG + chr1_3:3324755-3324774 Msa0097510:intron 30.0%
!! TCTAATTTTGGTCTGAAAGA+AGG + chr1_3:3324961-3324980 Msa0097510:intron 30.0%
!! TCTTTCCAACTATTTTAGAG+AGG - chr1_3:3325068-3325087 None:intergenic 30.0%
!! GCATTTTCAGAAATAATGGA+AGG + chr1_3:3325274-3325293 Msa0097510:intron 30.0%
!! TTCTTGGTTCTAAACTACTT+GGG + chr1_3:3325348-3325367 Msa0097510:exon 30.0%
TTCTAAACTACTTGGGATAA+GGG + chr1_3:3325355-3325374 Msa0097510:exon 30.0%
AAAGCAAAGAATCAAAGAGA+GGG - chr1_3:3325447-3325466 None:intergenic 30.0%
TTTGTGCACTATCTTTAGAT+TGG + chr1_3:3325481-3325500 Msa0097510:intron 30.0%
!! GGATCTAAACTTTTGAGTAT+AGG + chr1_3:3325502-3325521 Msa0097510:intron 30.0%
AGCAATCAAATCTATGATTC+AGG - chr1_3:3325577-3325596 None:intergenic 30.0%
AAATCGCTACTCCAATATAA+AGG + chr1_3:3325823-3325842 Msa0097510:intron 30.0%
CGATAAGTACTCCTTTATAT+TGG - chr1_3:3325837-3325856 None:intergenic 30.0%
GAAATTATCATGCAAAACTG+GGG - chr1_3:3326397-3326416 None:intergenic 30.0%
! AACATTGGTGCTTTCATATA+TGG - chr1_3:3326482-3326501 None:intergenic 30.0%
CTACAACAAAATCACAACAT+TGG - chr1_3:3326497-3326516 None:intergenic 30.0%
TGTAATCTTTATCTTATGCC+AGG - chr1_3:3326562-3326581 None:intergenic 30.0%
TCTATTATCAATACGATCCA+TGG - chr1_3:3326609-3326628 None:intergenic 30.0%
! AGTTTGAAACTCAACCTAAA+AGG - chr1_3:3326905-3326924 None:intergenic 30.0%
ACTGCAGTAAGTTCAAAAAA+TGG + chr1_3:3327110-3327129 Msa0097510:intron 30.0%
AACACATACACACACATATA+AGG + chr1_3:3327151-3327170 Msa0097510:intron 30.0%
ACACATACACACACATATAA+GGG + chr1_3:3327152-3327171 Msa0097510:intron 30.0%
ATACAACTAAGGCCATATTA+AGG - chr1_3:3327270-3327289 None:intergenic 30.0%
!!! AACAATTTTTTGCTGGTACT+CGG + chr1_3:3327296-3327315 Msa0097510:intron 30.0%
!!! ACCCTTTTTAGTTTTATGAG+AGG + chr1_3:3327475-3327494 Msa0097510:intron 30.0%
GCCTCTCATAAAACTAAAAA+GGG - chr1_3:3327479-3327498 None:intergenic 30.0%
GATTGGCAGAATTTATGAAT+AGG + chr1_3:3327552-3327571 Msa0097510:intron 30.0%
GATACTGTTCTTGACAAAAT+TGG + chr1_3:3327592-3327611 Msa0097510:three_prime_UTR 30.0%
GAGTTGTAGAATGTGAATTA+TGG - chr1_3:3327717-3327736 None:intergenic 30.0%
!! ATTGGTGTCAAAAATATGCT+CGG + chr1_3:3327868-3327887 Msa0097510:three_prime_UTR 30.0%
TAATGTTGAGACTTAAACTG+AGG - chr1_3:3328148-3328167 None:intergenic 30.0%
AAAATTTGGTCTCAACATGA+AGG + chr1_3:3328375-3328394 Msa0097510:three_prime_UTR 30.0%
! TTAGGAGCATGAATGATATT+TGG + chr1_3:3328514-3328533 Msa0097510:three_prime_UTR 30.0%
! ACATTGCAAGTCCAAATTTT+CGG + chr1_3:3328579-3328598 Msa0097510:three_prime_UTR 30.0%
! TTTTGCTGATGTTTTTCATG+GGG - chr1_3:3328698-3328717 None:intergenic 30.0%
!! GTAAGAAAAGTATTGATGAC+AGG - chr1_3:3328862-3328881 None:intergenic 30.0%
TGGGTCGAAAACAAAAAAAA+AGG - chr1_3:3328890-3328909 None:intergenic 30.0%
TTCCTTATGGAATTCATCAT+AGG + chr1_3:3329193-3329212 Msa0097510:three_prime_UTR 30.0%
ATCCTATGATGAATTCCATA+AGG - chr1_3:3329198-3329217 None:intergenic 30.0%
GAATTATACATCAAGCTTGA+TGG - chr1_3:3329231-3329250 None:intergenic 30.0%
GTGCTTGTTTAAATTCATTG+TGG + chr1_3:3329299-3329318 Msa0097510:three_prime_UTR 30.0%
TTTGCTTTGTAACTTAGCAA+TGG + chr1_3:3329345-3329364 Msa0097510:three_prime_UTR 30.0%
AAAAGAATGGAGAGGTTAAA+AGG + chr1_3:3329902-3329921 Msa0097510:intron 30.0%
TTGATTAATACCCAGGAATT+AGG + chr1_3:3330020-3330039 Msa0097510:intron 30.0%
CTAAAGAAAACAATGGATGA+TGG - chr1_3:3330090-3330109 None:intergenic 30.0%
TGGAAGATGAATTCCATATT+TGG - chr1_3:3330236-3330255 None:intergenic 30.0%
TTTGCTTCTCAGTTATACAA+AGG - chr1_3:3330292-3330311 None:intergenic 30.0%
CTGAGAAGCAAAAAATGAAT+AGG + chr1_3:3330300-3330319 Msa0097510:intron 30.0%
CATTGGAGAATATAAGGAAT+TGG + chr1_3:3330470-3330489 Msa0097510:three_prime_UTR 30.0%
GTGTAGTAGAACAATTTGTA+TGG + chr1_3:3330579-3330598 Msa0097510:three_prime_UTR 30.0%
TGATGAAGATTTCAATGACA+AGG + chr1_3:3330608-3330627 Msa0097510:three_prime_UTR 30.0%
ATAAACAATACAGCCTATAG+AGG - chr1_3:3330784-3330803 None:intergenic 30.0%
!! TGATTTGCTTTCTATTACCT+AGG - chr1_3:3330876-3330895 None:intergenic 30.0%
! GTTTTATAGAGGAGATGAAG+GGG - chr1_3:3323201-3323220 None:intergenic 35.0%
!! GGTTTTATAGAGGAGATGAA+GGG - chr1_3:3323202-3323221 None:intergenic 35.0%
! CAGATCGTGATTTTTCTTTG+AGG - chr1_3:3323224-3323243 None:intergenic 35.0%
AAATGACACTTCCACCATTT+CGG + chr1_3:3323291-3323310 Msa0097510:five_prime_UTR 35.0%
GCGAATCTGAAAGAAAATAG+AGG - chr1_3:3323515-3323534 None:intergenic 35.0%
!! GTTTTTGGATCTCAGCTTAA+TGG + chr1_3:3323725-3323744 Msa0097510:intron 35.0%
TCATAGACCATTGTAGTTTC+AGG - chr1_3:3323934-3323953 None:intergenic 35.0%
!! CTATCTCTAACTGATTCGAA+TGG + chr1_3:3323991-3324010 Msa0097510:CDS 35.0%
AGAAACCTACACGAATCTAT+TGG - chr1_3:3324187-3324206 None:intergenic 35.0%
CTAATTAGCATCTTCCATTC+TGG + chr1_3:3324506-3324525 Msa0097510:intron 35.0%
AGGGTAAACATATGGTATGT+TGG - chr1_3:3324658-3324677 None:intergenic 35.0%
AGTCAATAGAAGTGGACAAA+GGG - chr1_3:3324677-3324696 None:intergenic 35.0%
TAGTCAATAGAAGTGGACAA+AGG - chr1_3:3324678-3324697 None:intergenic 35.0%
GCAATAGTAGTCAATAGAAG+TGG - chr1_3:3324685-3324704 None:intergenic 35.0%
! CACTTCCGTTTTCATCTTAA+TGG - chr1_3:3324835-3324854 None:intergenic 35.0%
!! GTTCTTGGTTCTAAACTACT+TGG + chr1_3:3325347-3325366 Msa0097510:exon 35.0%
! GTTCTAAACTACTTGGGATA+AGG + chr1_3:3325354-3325373 Msa0097510:exon 35.0%
AAGGGCAAGAATTTCTATAC+TGG + chr1_3:3325373-3325392 Msa0097510:three_prime_UTR 35.0%
GAAAGCAAAGAATCAAAGAG+AGG - chr1_3:3325448-3325467 None:intergenic 35.0%
TGTGTTAGAAACTCCAAACT+TGG + chr1_3:3325871-3325890 Msa0097510:intron 35.0%
ATATTACCAGTCTCCAAGTT+TGG - chr1_3:3325887-3325906 None:intergenic 35.0%
!!! GTTGGGAATTTTTCAAGCAA+AGG + chr1_3:3325925-3325944 Msa0097510:intron 35.0%
TGGTAGTTTAGCCTCTTAAA+AGG + chr1_3:3326067-3326086 Msa0097510:intron 35.0%
CCTCTTAAAAGGAATGCTTA+CGG + chr1_3:3326078-3326097 Msa0097510:intron 35.0%
! TCTAAAAGCATAGAGAACCA+TGG + chr1_3:3326589-3326608 Msa0097510:intron 35.0%
ATTTAAACGCAGCTCTGTAA+TGG + chr1_3:3326629-3326648 Msa0097510:intron 35.0%
TTTAAACGCAGCTCTGTAAT+GGG + chr1_3:3326630-3326649 Msa0097510:intron 35.0%
! GCAGTTGATTTATTTCAGGT+TGG - chr1_3:3326789-3326808 None:intergenic 35.0%
! AGAGGCAGTTGATTTATTTC+AGG - chr1_3:3326793-3326812 None:intergenic 35.0%
GAAATAAATCAACTGCCTCT+TGG + chr1_3:3326793-3326812 Msa0097510:intron 35.0%
AGAATGGATGCAAACAACAT+AGG - chr1_3:3327074-3327093 None:intergenic 35.0%
TATAAGGGCAGATTTAACTC+AGG + chr1_3:3327167-3327186 Msa0097510:intron 35.0%
GGCCTCTCATAAAACTAAAA+AGG - chr1_3:3327480-3327499 None:intergenic 35.0%
ATAAGACACCTCAAGTAAAG+AGG + chr1_3:3327673-3327692 Msa0097510:three_prime_UTR 35.0%
! CTTCTACGGGTTTTCTTAAT+TGG + chr1_3:3327850-3327869 Msa0097510:three_prime_UTR 35.0%
! AATGTTAGCTTCCTCAGTTT+AGG + chr1_3:3328307-3328326 Msa0097510:three_prime_UTR 35.0%
TATAATCCATACTCTCGCTA+AGG - chr1_3:3328467-3328486 None:intergenic 35.0%
! TTAGCGAGAGTATGGATTAT+AGG + chr1_3:3328466-3328485 Msa0097510:three_prime_UTR 35.0%
! ATACGAACGTGAAGGATTTT+AGG + chr1_3:3328496-3328515 Msa0097510:three_prime_UTR 35.0%
! TTTGCTGATGTTTTTCATGG+GGG - chr1_3:3328697-3328716 None:intergenic 35.0%
ATAACAGCTGTTCATCCTAT+GGG - chr1_3:3328725-3328744 None:intergenic 35.0%
! CTTCTACAAACCTGGATTTT+CGG - chr1_3:3328786-3328805 None:intergenic 35.0%
! TATTGATGACAGGGTTTGAA+AGG - chr1_3:3328852-3328871 None:intergenic 35.0%
AAGGAACTAAATGCAAAGAG+AGG - chr1_3:3328930-3328949 None:intergenic 35.0%
CACATCTATTAGAACTGCTT+AGG - chr1_3:3329051-3329070 None:intergenic 35.0%
! AGCAGTTCTAATAGATGTGA+TGG + chr1_3:3329052-3329071 Msa0097510:three_prime_UTR 35.0%
! GCAGTTCTAATAGATGTGAT+GGG + chr1_3:3329053-3329072 Msa0097510:three_prime_UTR 35.0%
!! AATAGATGTGATGGGTCAAA+AGG + chr1_3:3329061-3329080 Msa0097510:three_prime_UTR 35.0%
TATACATCAAGCTTGATGGA+GGG - chr1_3:3329227-3329246 None:intergenic 35.0%
TTATACATCAAGCTTGATGG+AGG - chr1_3:3329228-3329247 None:intergenic 35.0%
!! ACAGAGGTATTGGATAGAAA+AGG - chr1_3:3329458-3329477 None:intergenic 35.0%
! CTTTCTAAGAACATCGAGAT+AGG + chr1_3:3329504-3329523 Msa0097510:intron 35.0%
TAAGAACATCGAGATAGGAA+AGG + chr1_3:3329509-3329528 Msa0097510:intron 35.0%
TAAAAGGTGATGTTGCAGTT+TGG + chr1_3:3329918-3329937 Msa0097510:intron 35.0%
TTGTGTCTTGATTAATACCC+AGG + chr1_3:3330013-3330032 Msa0097510:intron 35.0%
GGAATTCATCTTCCATTAGA+AGG + chr1_3:3330241-3330260 Msa0097510:intron 35.0%
! TCCATCTTCAAATTTTCTGC+AGG + chr1_3:3330428-3330447 Msa0097510:intron 35.0%
! CCATCTTCAAATTTTCTGCA+GGG + chr1_3:3330429-3330448 Msa0097510:intron 35.0%
ATCTGGACATAAACATGAAG+AGG + chr1_3:3330533-3330552 Msa0097510:three_prime_UTR 35.0%
ATAAACATGAAGAGGTGGAA+AGG + chr1_3:3330541-3330560 Msa0097510:three_prime_UTR 35.0%
TCAATGACAAGGTGATATAG+AGG + chr1_3:3330619-3330638 Msa0097510:three_prime_UTR 35.0%
AGAATGCACATGGGAATATA+AGG + chr1_3:3330841-3330860 Msa0097510:three_prime_UTR 35.0%
ATATAAGGTACATCCTACCT+AGG + chr1_3:3330856-3330875 Msa0097510:three_prime_UTR 35.0%
TTGCTTTCTATTACCTAGGT+AGG - chr1_3:3330872-3330891 None:intergenic 35.0%
AGATCTAAGGGAGAAGATGA+TGG - chr1_3:3323131-3323150 None:intergenic 40.0%
TCATCTTCTCCCTTAGATCT+CGG + chr1_3:3323131-3323150 Msa0097510:five_prime_UTR 40.0%
! GATGAAGGGGAGTCTTTTTA+AGG - chr1_3:3323188-3323207 None:intergenic 40.0%
!! GGGTTTTATAGAGGAGATGA+AGG - chr1_3:3323203-3323222 None:intergenic 40.0%
!! AATGGTGGAAGTGTCATTTC+CGG - chr1_3:3323290-3323309 None:intergenic 40.0%
ACAACGTTATTCCGAAATGG+TGG - chr1_3:3323305-3323324 None:intergenic 40.0%
! TCCGCAAAAAGCTTCGTTTT+CGG + chr1_3:3323536-3323555 Msa0097510:five_prime_UTR 40.0%
! ACCGAAAACGAAGCTTTTTG+CGG - chr1_3:3323540-3323559 None:intergenic 40.0%
TCTACAACCTTCGTCATGTA+AGG + chr1_3:3323595-3323614 Msa0097510:five_prime_UTR 40.0%
AAAGTGACCTTACATGACGA+AGG - chr1_3:3323605-3323624 None:intergenic 40.0%
CGACTTATTCACATCCACAA+GGG + chr1_3:3323662-3323681 Msa0097510:intron 40.0%
! GTTGTTGTTGTTGCATGTGT+GGG - chr1_3:3323689-3323708 None:intergenic 40.0%
! TGTTGTTGTTGTTGCATGTG+TGG - chr1_3:3323690-3323709 None:intergenic 40.0%
AACAGTGCCTGAAACTACAA+TGG + chr1_3:3323924-3323943 Msa0097510:five_prime_UTR 40.0%
AGCATCCAATAGATTCGTGT+AGG + chr1_3:3324179-3324198 Msa0097510:intron 40.0%
TTTCTTCGTACTGTTTGTCC+TGG - chr1_3:3324562-3324581 None:intergenic 40.0%
GTGGACAAAGGGTAAACATA+TGG - chr1_3:3324666-3324685 None:intergenic 40.0%
CATAACATAATGCGACAACG+AGG + chr1_3:3324718-3324737 Msa0097510:intron 40.0%
! CCGTAAGCATTCCTTTTAAG+AGG - chr1_3:3326081-3326100 None:intergenic 40.0%
CTTAATGAAGAGGCAAGTGT+AGG - chr1_3:3326193-3326212 None:intergenic 40.0%
TTCCAACTGCGAAAATGAAG+AGG + chr1_3:3326274-3326293 Msa0097510:intron 40.0%
! ATCCTCTTCATTTTCGCAGT+TGG - chr1_3:3326279-3326298 None:intergenic 40.0%
CCATGGATATTCAGAGTTCA+AGG - chr1_3:3326700-3326719 None:intergenic 40.0%
CCTTGAACTCTGAATATCCA+TGG + chr1_3:3326697-3326716 Msa0097510:intron 40.0%
GTCTCTGTATTAGAAAGCCA+TGG - chr1_3:3326717-3326736 None:intergenic 40.0%
GAAAGGAAAATGAGTCCAAG+AGG - chr1_3:3326811-3326830 None:intergenic 40.0%
GGTTGAGTTTCAAACTTCTG+TGG + chr1_3:3326909-3326928 Msa0097510:intron 40.0%
!! GGTCTTTTCTCCATTGATTG+TGG - chr1_3:3326956-3326975 None:intergenic 40.0%
! ACATAGGCTGCCATTTATAG+AGG - chr1_3:3327058-3327077 None:intergenic 40.0%
!! AAACCTTCACACTGGTTCAT+GGG + chr1_3:3327324-3327343 Msa0097510:intron 40.0%
AGCATGAGACATCATAACAC+GGG - chr1_3:3327360-3327379 None:intergenic 40.0%
GAGCATGAGACATCATAACA+CGG - chr1_3:3327361-3327380 None:intergenic 40.0%
TTGGTGTGCTAGATACAGAA+CGG + chr1_3:3327611-3327630 Msa0097510:three_prime_UTR 40.0%
ATACAGAACGGATGGACATT+TGG + chr1_3:3327623-3327642 Msa0097510:three_prime_UTR 40.0%
GGTGTCAAAACTCACTTCTA+CGG + chr1_3:3327836-3327855 Msa0097510:three_prime_UTR 40.0%
GTGTCAAAACTCACTTCTAC+GGG + chr1_3:3327837-3327856 Msa0097510:three_prime_UTR 40.0%
TCGGCCTTCATGTAATAATG+AGG + chr1_3:3327887-3327906 Msa0097510:three_prime_UTR 40.0%
CAATTACCTTAGCGAGAGTA+TGG + chr1_3:3328458-3328477 Msa0097510:three_prime_UTR 40.0%
GAAGATGAATACGAACGTGA+AGG + chr1_3:3328488-3328507 Msa0097510:three_prime_UTR 40.0%
TAACAGCTGTTCATCCTATG+GGG - chr1_3:3328724-3328743 None:intergenic 40.0%
CATAACAGCTGTTCATCCTA+TGG - chr1_3:3328726-3328745 None:intergenic 40.0%
TCACACATCTTCTACAAACC+TGG - chr1_3:3328794-3328813 None:intergenic 40.0%
! CTTACAACAGACAGAGGTAT+TGG - chr1_3:3329468-3329487 None:intergenic 40.0%
ACCTCTGTCTGTTGTAAGAT+AGG + chr1_3:3329470-3329489 Msa0097510:intron 40.0%
TTAATGAAGAGGCAAGCGTA+AGG - chr1_3:3329725-3329744 None:intergenic 40.0%
CATGAGAAAGGTGATGAATG+AGG - chr1_3:3330385-3330404 None:intergenic 40.0%
CCCTGCAGAAAATTTGAAGA+TGG - chr1_3:3330432-3330451 None:intergenic 40.0%
TGGACATAAACATGAAGAGG+TGG + chr1_3:3330536-3330555 Msa0097510:three_prime_UTR 40.0%
ATGAAGAGGTGGAAAGGAAT+GGG + chr1_3:3330547-3330566 Msa0097510:three_prime_UTR 40.0%
ATGACAAGGTGATATAGAGG+TGG + chr1_3:3330622-3330641 Msa0097510:three_prime_UTR 40.0%
GATATAGAGGTGGAAGGAAA+TGG + chr1_3:3330632-3330651 Msa0097510:three_prime_UTR 40.0%
GAAGGAAATGGACATTGGAA+AGG + chr1_3:3330644-3330663 Msa0097510:three_prime_UTR 40.0%
!! TGGAAGTGTCATTTCCGGTA+CGG - chr1_3:3323285-3323304 None:intergenic 45.0%
! GAAAACGAAGCTTTTTGCGG+AGG - chr1_3:3323537-3323556 None:intergenic 45.0%
! GTCACTTTCAAGCTCAACCA+TGG + chr1_3:3323558-3323577 Msa0097510:five_prime_UTR 45.0%
AGCTCAACCATGGAGTTTAG+CGG + chr1_3:3323568-3323587 Msa0097510:five_prime_UTR 45.0%
GCGACTTATTCACATCCACA+AGG + chr1_3:3323661-3323680 Msa0097510:intron 45.0%
GAAACTCCAAACTTGGAGAC+TGG + chr1_3:3325878-3325897 Msa0097510:intron 45.0%
!! CAAACCTTCACACTGGTTCA+TGG + chr1_3:3327323-3327342 Msa0097510:intron 45.0%
TGTGCTAGATACAGAACGGA+TGG + chr1_3:3327615-3327634 Msa0097510:three_prime_UTR 45.0%
AGGGGTTACCTCTTTACTTG+AGG - chr1_3:3327684-3327703 None:intergenic 45.0%
TGATGCTGAGACCTAAACTG+AGG - chr1_3:3328321-3328340 None:intergenic 45.0%
CGCAACGTAGCTCATTCATT+TGG - chr1_3:3328552-3328571 None:intergenic 45.0%
CATCAGCAAAAATGCCCCAT+AGG + chr1_3:3328707-3328726 Msa0097510:three_prime_UTR 45.0%
!! TTTCTGGTTGCCGAAAATCC+AGG + chr1_3:3328773-3328792 Msa0097510:three_prime_UTR 45.0%
CAGGGTTTGAAAGGTCTTCA+TGG - chr1_3:3328843-3328862 None:intergenic 45.0%
GCAATGGATATCGTCGAGTT+TGG + chr1_3:3329361-3329380 Msa0097510:three_prime_UTR 45.0%
TATCGTCGAGTTTGGAGAGT+TGG + chr1_3:3329369-3329388 Msa0097510:three_prime_UTR 45.0%
GCCTATCTTACAACAGACAG+AGG - chr1_3:3329474-3329493 None:intergenic 45.0%
CATCGAGATAGGAAAGGTTG+TGG + chr1_3:3329515-3329534 Msa0097510:intron 45.0%
CCAACGTCATCCTAATTCCT+GGG - chr1_3:3330033-3330052 None:intergenic 45.0%
TCCAACGTCATCCTAATTCC+TGG - chr1_3:3330034-3330053 None:intergenic 45.0%
!! AGGATGACGTTGGAGTGTTT+TGG + chr1_3:3330040-3330059 Msa0097510:three_prime_UTR 45.0%
CATGAAGAGGTGGAAAGGAA+TGG + chr1_3:3330546-3330565 Msa0097510:three_prime_UTR 45.0%
CAAGGTGATATAGAGGTGGA+AGG + chr1_3:3330626-3330645 Msa0097510:three_prime_UTR 45.0%
AGGTGGAAGGAAATGGACAT+TGG + chr1_3:3330639-3330658 Msa0097510:three_prime_UTR 45.0%
AGTGCATAACACTGCAACGA+AGG + chr1_3:3330667-3330686 Msa0097510:three_prime_UTR 45.0%
TTATAGGTGGGAGCCTCTAT+AGG + chr1_3:3330768-3330787 Msa0097510:three_prime_UTR 45.0%
!!! TATTTTATTTATTTTATTGA+AGG - chr1_3:3325178-3325197 None:intergenic 5.0%
!!! ATATTTTTATAGTTAAAATT+TGG + chr1_3:3328361-3328380 Msa0097510:three_prime_UTR 5.0%
CTACGATGGCCGAGATCTAA+GGG - chr1_3:3323143-3323162 None:intergenic 50.0%
TCTACGATGGCCGAGATCTA+AGG - chr1_3:3323144-3323163 None:intergenic 50.0%
GGTACGGCGATGATGATTTC+CGG - chr1_3:3323269-3323288 None:intergenic 50.0%
GGAAATCATCATCGCCGTAC+CGG + chr1_3:3323268-3323287 Msa0097510:five_prime_UTR 50.0%
AGATCTGCCGCTAAACTCCA+TGG - chr1_3:3323578-3323597 None:intergenic 50.0%
AAGAGAGGGAGAGAGAGAGA+GGG - chr1_3:3325433-3325452 None:intergenic 50.0%
AAAGAGAGGGAGAGAGAGAG+AGG - chr1_3:3325434-3325453 None:intergenic 50.0%
CGGTTCTCAAACCTTCACAC+TGG + chr1_3:3327316-3327335 Msa0097510:intron 50.0%
TCACCCATGAACCAGTGTGA+AGG - chr1_3:3327330-3327349 None:intergenic 50.0%
CCCAGGAATTAGGATGACGT+TGG + chr1_3:3330030-3330049 Msa0097510:intron 50.0%
!! GATGATGGTACTGACCAGCA+GGG - chr1_3:3330075-3330094 None:intergenic 50.0%
!! TTTTTCGGTGACCACCGTGC+CGG + chr1_3:3323247-3323266 Msa0097510:five_prime_UTR 55.0%
GATGATGATTTCCGGCACGG+TGG - chr1_3:3323261-3323280 None:intergenic 55.0%
GGCGATGATGATTTCCGGCA+CGG - chr1_3:3323264-3323283 None:intergenic 55.0%
TTGCATGTGTGGGACCCTTG+TGG - chr1_3:3323679-3323698 None:intergenic 55.0%
AATGAGCTACGTTGCGCAGC+TGG + chr1_3:3328556-3328575 Msa0097510:three_prime_UTR 55.0%
TTTGGCAGTGATCTCCCTGC+TGG + chr1_3:3330058-3330077 Msa0097510:three_prime_UTR 55.0%
!! GGATGATGGTACTGACCAGC+AGG - chr1_3:3330076-3330095 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3323128 3330916 3323128 ID=Msa0097510;Name=Msa0097510
chr1_3 mRNA 3323128 3330916 3323128 ID=Msa0097510-mRNA-1;Parent=Msa0097510;Name=Msa0097510-mRNA-1;_AED=0.10;_eAED=0.10;_QI=408|1|1|1|0|0.33|9|2338|66
chr1_3 exon 3323128 3323362 3323128 ID=Msa0097510-mRNA-1:exon:955;Parent=Msa0097510-mRNA-1
chr1_3 exon 3323529 3323616 3323529 ID=Msa0097510-mRNA-1:exon:956;Parent=Msa0097510-mRNA-1
chr1_3 exon 3323882 3324012 3323882 ID=Msa0097510-mRNA-1:exon:957;Parent=Msa0097510-mRNA-1
chr1_3 exon 3324563 3324640 3324563 ID=Msa0097510-mRNA-1:exon:958;Parent=Msa0097510-mRNA-1
chr1_3 exon 3325284 3325406 3325284 ID=Msa0097510-mRNA-1:exon:959;Parent=Msa0097510-mRNA-1
chr1_3 exon 3327561 3327694 3327561 ID=Msa0097510-mRNA-1:exon:960;Parent=Msa0097510-mRNA-1
chr1_3 exon 3327800 3329445 3327800 ID=Msa0097510-mRNA-1:exon:961;Parent=Msa0097510-mRNA-1
chr1_3 exon 3330035 3330079 3330035 ID=Msa0097510-mRNA-1:exon:962;Parent=Msa0097510-mRNA-1
chr1_3 exon 3330450 3330916 3330450 ID=Msa0097510-mRNA-1:exon:963;Parent=Msa0097510-mRNA-1
chr1_3 five_prime_UTR 3323128 3323362 3323128 ID=Msa0097510-mRNA-1:five_prime_utr;Parent=Msa0097510-mRNA-1
chr1_3 five_prime_UTR 3323529 3323616 3323529 ID=Msa0097510-mRNA-1:five_prime_utr;Parent=Msa0097510-mRNA-1
chr1_3 five_prime_UTR 3323882 3323966 3323882 ID=Msa0097510-mRNA-1:five_prime_utr;Parent=Msa0097510-mRNA-1
chr1_3 CDS 3323967 3324012 3323967 ID=Msa0097510-mRNA-1:cds;Parent=Msa0097510-mRNA-1
chr1_3 CDS 3324563 3324640 3324563 ID=Msa0097510-mRNA-1:cds;Parent=Msa0097510-mRNA-1
chr1_3 CDS 3325284 3325360 3325284 ID=Msa0097510-mRNA-1:cds;Parent=Msa0097510-mRNA-1
chr1_3 three_prime_UTR 3325361 3325406 3325361 ID=Msa0097510-mRNA-1:three_prime_utr;Parent=Msa0097510-mRNA-1
chr1_3 three_prime_UTR 3327561 3327694 3327561 ID=Msa0097510-mRNA-1:three_prime_utr;Parent=Msa0097510-mRNA-1
chr1_3 three_prime_UTR 3327800 3329445 3327800 ID=Msa0097510-mRNA-1:three_prime_utr;Parent=Msa0097510-mRNA-1
chr1_3 three_prime_UTR 3330035 3330079 3330035 ID=Msa0097510-mRNA-1:three_prime_utr;Parent=Msa0097510-mRNA-1
chr1_3 three_prime_UTR 3330450 3330916 3330450 ID=Msa0097510-mRNA-1:three_prime_utr;Parent=Msa0097510-mRNA-1
Gene Sequence

>Msa0097510

ATGGCTGTTCGCAGAGTAGATGCTCTATCTCTAACTGATTCGAATGGACAAACAGTACGAAGAAAGAAAGAAAAATCACCTTCAGAATTTACTTATTTTGGAGATTACCACTTACAAAATCAAGAAATAATGGAAGGAACAAAGAAGAGTGTTTGCTTCAACAGTTTCACCAACAATGATATTTTTGGTTCTTGGTTCTAA
Protein sequence

>Msa0097510

MAVRRVDALSLTDSNGQTVRRKKEKSPSEFTYFGDYHLQNQEIMEGTKKSVCFNSFTNNDIFGSWF*