AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1113170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113170 MtrunA17_Chr1g0155331 96.429 84 2 1 118 201 148 230 2.08e-53 171
Msa1113170 MtrunA17_Chr1g0155331 79.412 34 7 0 88 121 54 87 3.14e-11 60.8
Msa1113170 MtrunA17_Chr2g0298841 96.429 84 2 1 118 201 148 230 3.01e-53 171
Msa1113170 MtrunA17_Chr2g0298841 85.294 34 5 0 88 121 54 87 3.32e-12 63.5
Msa1113170 MtrunA17_Chr4g0002321 88.095 84 9 1 118 201 147 229 1.02e-48 159
Msa1113170 MtrunA17_Chr1g0155311 93.103 58 3 1 144 201 2 58 4.07e-33 114
Msa1113170 MtrunA17_Chr7g0237701 52.941 85 39 1 117 201 149 232 3.91e-28 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113170 AT2G44120.1 84.706 85 12 1 117 201 145 228 1.43e-48 159
Msa1113170 AT2G44120.2 84.706 85 12 1 117 201 150 233 1.90e-48 159
Msa1113170 AT2G01250.1 84.706 85 12 1 117 201 145 228 4.23e-48 158
Msa1113170 AT3G13580.5 83.529 85 13 1 117 201 147 230 3.34e-47 155
Msa1113170 AT3G13580.4 83.529 85 13 1 117 201 147 230 3.34e-47 155
Msa1113170 AT3G13580.2 83.529 85 13 1 117 201 147 230 3.34e-47 155
Msa1113170 AT3G13580.3 83.529 85 13 1 117 201 147 230 3.34e-47 155
Msa1113170 AT3G13580.1 83.529 85 13 1 117 201 147 230 3.34e-47 155
Msa1113170 AT3G13580.7 83.529 85 13 1 117 201 147 230 3.34e-47 155
Msa1113170 AT3G13580.8 83.529 85 13 1 117 201 147 230 3.34e-47 155
Msa1113170 AT3G13580.6 83.529 85 13 1 117 201 147 230 3.34e-47 155
Msa1113170 AT3G13580.9 83.529 85 13 1 117 201 147 230 3.34e-47 155
Msa1113170 AT1G80750.1 45.455 99 49 1 117 210 149 247 4.19e-21 88.2

Find 47 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGAAATGATCTCTTTAA+TGG 0.156828 7_3:-59370067 None:intergenic
TCTTTAATGGGTTTAGTATT+TGG 0.157168 7_3:-59370054 None:intergenic
CTTTAATGGGTTTAGTATTT+GGG 0.158133 7_3:-59370053 None:intergenic
CATCTATTTGTATTTGAAAT+AGG 0.189963 7_3:-59369962 None:intergenic
ATACTATTGTGCTTGGGATT+TGG 0.274776 7_3:+59371514 Msa1113170:CDS
TTTCAAGCTCAAAGCTCCTT+TGG 0.284641 7_3:+59372595 Msa1113170:CDS
AAATTATGATTATTCATATC+AGG 0.310670 7_3:-59370003 None:intergenic
AGTGTTCAATTGCAGGTTCT+TGG 0.317764 7_3:+59372482 Msa1113170:intron
CTTGAAATGATCTCTTTAAT+GGG 0.329432 7_3:-59370066 None:intergenic
TTCAAGCTCAAAGCTCCTTT+GGG 0.329811 7_3:+59372596 Msa1113170:CDS
TTGATCTACAAGCGCGGTTA+TGG 0.337108 7_3:+59372142 Msa1113170:CDS
GGTGGTGATGCTGGTATAAC+AGG 0.362244 7_3:+59372656 Msa1113170:CDS
TCAATTCTCTAACACTCTTC+AGG 0.373375 7_3:-59372123 None:intergenic
GTGTTCAATTGCAGGTTCTT+GGG 0.403327 7_3:+59372483 Msa1113170:intron
CTTCGTATACTATTGTGCTT+GGG 0.420026 7_3:+59371508 Msa1113170:CDS
CATCTCCTCTTCTTCTCTCT+CGG 0.440792 7_3:+59369910 Msa1113170:five_prime_UTR
AGTTTAGCATCGGCAGTTCA+TGG 0.454294 7_3:+59370087 Msa1113170:CDS
ACATCAATGAACTCATTAGA+AGG 0.462677 7_3:+59372686 Msa1113170:CDS
GCTTCGTATACTATTGTGCT+TGG 0.463624 7_3:+59371507 Msa1113170:CDS
GAAGCGTGAAGCTAAGCTTA+AGG 0.464202 7_3:+59372083 Msa1113170:CDS
AAGCGTGAAGCTAAGCTTAA+GGG 0.467088 7_3:+59372084 Msa1113170:CDS
AGATAACTCTATCATTGAAC+AGG 0.482014 7_3:+59372195 Msa1113170:CDS
AAGAGAAATCACTATGTTGA+AGG 0.489111 7_3:+59372635 Msa1113170:CDS
AAAGGAGCTTTGAGCTTGAA+AGG 0.504831 7_3:-59372593 None:intergenic
GAGAGGCAAACAACTTCCTA+TGG 0.504947 7_3:+59372570 Msa1113170:CDS
GGAATACGATGATTCGCAAA+AGG 0.507484 7_3:+59372047 Msa1113170:CDS
TTTAATGGGTTTAGTATTTG+GGG 0.509940 7_3:-59370052 None:intergenic
TATGTTGAAGGTGGTGATGC+TGG 0.512402 7_3:+59372647 Msa1113170:CDS
AGCATCGGCAGTTCATGGCC+AGG 0.517384 7_3:+59370092 Msa1113170:CDS
ATAAGCTAGAGCAGCAGCCA+AGG 0.523738 7_3:+59371537 Msa1113170:CDS
TTCTTCTTCATGCCACCCAA+AGG 0.545612 7_3:-59372611 None:intergenic
TTGCAGGTTCTTGGGAAACA+TGG 0.547799 7_3:+59372491 Msa1113170:intron
ATCCACGAGATCATGACTGT+TGG 0.549865 7_3:+59372536 Msa1113170:CDS
GCGGTTATGGAAAGGTTGAT+AGG 0.549876 7_3:+59372155 Msa1113170:CDS
GATCATTTCAAGTTTAGCAT+CGG 0.555247 7_3:+59370077 Msa1113170:CDS
CTTTGAGCTTGAAAGGCCAT+AGG 0.568033 7_3:-59372586 None:intergenic
GGTAGCCGAGAGAGAAGAAG+AGG 0.570809 7_3:-59369915 None:intergenic
AAGCTCAAAGCTCCTTTGGG+TGG 0.570830 7_3:+59372599 Msa1113170:CDS
ATCCAACAGTCATGATCTCG+TGG 0.585385 7_3:-59372538 None:intergenic
CTACAAGCGCGGTTATGGAA+AGG 0.599869 7_3:+59372147 Msa1113170:CDS
CGTGAAGCTAAGCTTAAGGG+TGG 0.634387 7_3:+59372087 Msa1113170:CDS
AGAAATCACTATGTTGAAGG+TGG 0.637998 7_3:+59372638 Msa1113170:CDS
GTGGTGATGCTGGTATAACA+GGG 0.670257 7_3:+59372657 Msa1113170:CDS
ACTATCATATAATAGTGACA+TGG 0.703053 7_3:+59371679 Msa1113170:intron
AGAGAATTGATCTACAAGCG+CGG 0.721136 7_3:+59372136 Msa1113170:intron
TGTTGGATCTCACTTCAGAG+AGG 0.724978 7_3:+59372553 Msa1113170:CDS
GTGATGCTGGTATAACAGGG+AGG 0.752839 7_3:+59372660 Msa1113170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAATATTCAAATTAAAA+AGG - chr7_3:59370758-59370777 None:intergenic 10.0%
!! TATATTATATGAAAAGTAAA+TGG - chr7_3:59370930-59370949 None:intergenic 10.0%
!! AAATTATGATTATTCATATC+AGG - chr7_3:59370006-59370025 None:intergenic 15.0%
!!! AATGTTTTAGAATTTTAGAA+TGG + chr7_3:59372021-59372040 Msa1113170:intron 15.0%
!! GAAAAATAGAAAAATTTAAC+CGG - chr7_3:59372453-59372472 None:intergenic 15.0%
!!! CATCTATTTGTATTTGAAAT+AGG - chr7_3:59369965-59369984 None:intergenic 20.0%
!!! AATAATCATAATTTTCTGCA+GGG + chr7_3:59370012-59370031 Msa1113170:CDS 20.0%
!! AAATTAGAATGAAGTTAACA+AGG - chr7_3:59370244-59370263 None:intergenic 20.0%
!! TTTATTATGAGTTAGTATTG+CGG + chr7_3:59370262-59370281 Msa1113170:intron 20.0%
!!! TGATGTTTGTTAATGAAAAT+TGG + chr7_3:59370572-59370591 Msa1113170:intron 20.0%
!!! TTGTGTAGAGAATTTTTTAT+TGG + chr7_3:59370689-59370708 Msa1113170:intron 20.0%
!!! GAATTTTTTATTGGCTAATT+TGG + chr7_3:59370698-59370717 Msa1113170:intron 20.0%
!! ATTTGAATATTCTTATGTTC+TGG + chr7_3:59370763-59370782 Msa1113170:intron 20.0%
!! TTCAAAATCAATAACTTCAA+AGG - chr7_3:59370798-59370817 None:intergenic 20.0%
!!! AGTTTGAATTAACTCAATTT+TGG + chr7_3:59371570-59371589 Msa1113170:intron 20.0%
!!! TTAGAATATTTTCTTTCATG+TGG + chr7_3:59371596-59371615 Msa1113170:intron 20.0%
!!! TTCTTTCTTTGACTTATATA+TGG + chr7_3:59371871-59371890 Msa1113170:intron 20.0%
!!! TTTAGAATTTTAGAATGGTA+AGG + chr7_3:59372026-59372045 Msa1113170:intron 20.0%
!! TAGTTAAGATTTTGTGAGTT+CGG - chr7_3:59369940-59369959 None:intergenic 25.0%
!! GAATAATCATAATTTTCTGC+AGG + chr7_3:59370011-59370030 Msa1113170:CDS 25.0%
!!! TTTAATGGGTTTAGTATTTG+GGG - chr7_3:59370055-59370074 None:intergenic 25.0%
!!! CTTTAATGGGTTTAGTATTT+GGG - chr7_3:59370056-59370075 None:intergenic 25.0%
!!! TCTTTAATGGGTTTAGTATT+TGG - chr7_3:59370057-59370076 None:intergenic 25.0%
! CTTGAAATGATCTCTTTAAT+GGG - chr7_3:59370069-59370088 None:intergenic 25.0%
! ACTTGAAATGATCTCTTTAA+TGG - chr7_3:59370070-59370089 None:intergenic 25.0%
!!! TTCTCCAATTGTTTGTTTTA+GGG + chr7_3:59370450-59370469 Msa1113170:intron 25.0%
! AAAACCCTAAAACAAACAAT+TGG - chr7_3:59370457-59370476 None:intergenic 25.0%
!!! TTGTTTTAGGGTTTTAGAAT+TGG + chr7_3:59370462-59370481 Msa1113170:intron 25.0%
!!! TGTTTTAGGGTTTTAGAATT+GGG + chr7_3:59370463-59370482 Msa1113170:intron 25.0%
! TTAGAATTGGGAATTGTTAA+CGG + chr7_3:59370475-59370494 Msa1113170:intron 25.0%
! TGCTTATTATTGTTCAGAAT+TGG + chr7_3:59370521-59370540 Msa1113170:intron 25.0%
! GCTTATTATTGTTCAGAATT+GGG + chr7_3:59370522-59370541 Msa1113170:intron 25.0%
!! AATTGGCTATTGTTTGAAAT+TGG + chr7_3:59370589-59370608 Msa1113170:intron 25.0%
!! AATTGGTAATTGTTCAGATT+TGG + chr7_3:59370606-59370625 Msa1113170:intron 25.0%
!! ATTGGTAATTGTTCAGATTT+GGG + chr7_3:59370607-59370626 Msa1113170:intron 25.0%
!!! TTTTTTATTGGCTAATTTGG+TGG + chr7_3:59370701-59370720 Msa1113170:intron 25.0%
!!! TTTGAAAATTCTAGTCTTGA+TGG + chr7_3:59370812-59370831 Msa1113170:intron 25.0%
! TGCTCAACAATATTTAAACA+GGG - chr7_3:59370960-59370979 None:intergenic 25.0%
! TGATGTATAATTGACACATT+CGG - chr7_3:59371143-59371162 None:intergenic 25.0%
! TGTGTCAATTATACATCATT+TGG + chr7_3:59371145-59371164 Msa1113170:intron 25.0%
! CAATTATACATCATTTGGAT+TGG + chr7_3:59371150-59371169 Msa1113170:intron 25.0%
! AAAATAGAGAACAAAGTACA+AGG - chr7_3:59371304-59371323 None:intergenic 25.0%
! TCAAACTTAAAATACAACCT+TGG - chr7_3:59371557-59371576 None:intergenic 25.0%
!! AATATTTTCTTTCATGTGGA+AGG + chr7_3:59371600-59371619 Msa1113170:intron 25.0%
! ACTATCATATAATAGTGACA+TGG + chr7_3:59371679-59371698 Msa1113170:intron 25.0%
! CTTTCATATTTGTTCTTGTA+GGG + chr7_3:59371906-59371925 Msa1113170:intron 25.0%
!! TAATTTAAAGTACGTACTTG+TGG + chr7_3:59371937-59371956 Msa1113170:intron 25.0%
!! AATTTAAAGTACGTACTTGT+GGG + chr7_3:59371938-59371957 Msa1113170:intron 25.0%
! TGTTTATCCAATTAATAGTG+AGG + chr7_3:59371977-59371996 Msa1113170:intron 25.0%
! GTTTATCCAATTAATAGTGA+GGG + chr7_3:59371978-59371997 Msa1113170:intron 25.0%
! AGTTAAGATTTTGTGAGTTC+GGG - chr7_3:59369939-59369958 None:intergenic 30.0%
!! GATCATTTCAAGTTTAGCAT+CGG + chr7_3:59370077-59370096 Msa1113170:CDS 30.0%
AGAGTTCAATTATACGAACA+TGG - chr7_3:59370351-59370370 None:intergenic 30.0%
AGAGAAATTGGAGAATTGAT+AGG - chr7_3:59370426-59370445 None:intergenic 30.0%
CTAAAACAAACAATTGGAGA+AGG - chr7_3:59370451-59370470 None:intergenic 30.0%
!! CTTCTCCAATTGTTTGTTTT+AGG + chr7_3:59370449-59370468 Msa1113170:intron 30.0%
TAGAATTGGGAATTGTTAAC+GGG + chr7_3:59370476-59370495 Msa1113170:intron 30.0%
TCAGAATTGGGAATTGTTAA+TGG + chr7_3:59370534-59370553 Msa1113170:intron 30.0%
CAGAATTGGGAATTGTTAAT+GGG + chr7_3:59370535-59370554 Msa1113170:intron 30.0%
TCAGATTTGGGAATTGTTAA+TGG + chr7_3:59370619-59370638 Msa1113170:intron 30.0%
CAGATTTGGGAATTGTTAAT+GGG + chr7_3:59370620-59370639 Msa1113170:intron 30.0%
GTGCTCAACAATATTTAAAC+AGG - chr7_3:59370961-59370980 None:intergenic 30.0%
TCCATTCTCATATTCATTAG+TGG + chr7_3:59371069-59371088 Msa1113170:intron 30.0%
! TCTATTTTCATTCTCCTAGT+GGG + chr7_3:59371316-59371335 Msa1113170:intron 30.0%
AAGCATGATACTAAAGCATA+TGG - chr7_3:59371394-59371413 None:intergenic 30.0%
GTGATAACTATATCCAATGA+GGG - chr7_3:59371838-59371857 None:intergenic 30.0%
TGTGATAACTATATCCAATG+AGG - chr7_3:59371839-59371858 None:intergenic 30.0%
AGTCAAAGAAAGAATCTCAT+TGG - chr7_3:59371865-59371884 None:intergenic 30.0%
GCTTTCATATTTGTTCTTGT+AGG + chr7_3:59371905-59371924 Msa1113170:intron 30.0%
AGATAACTCTATCATTGAAC+AGG + chr7_3:59372195-59372214 Msa1113170:CDS 30.0%
!! GGTGCTATTATTATTGTTGA+AGG + chr7_3:59372419-59372438 Msa1113170:intron 30.0%
AAGAGAAATCACTATGTTGA+AGG + chr7_3:59372635-59372654 Msa1113170:CDS 30.0%
ACATCAATGAACTCATTAGA+AGG + chr7_3:59372686-59372705 Msa1113170:CDS 30.0%
TTTGATCTAGCAGTTGTTCA+CGG - chr7_3:59370210-59370229 None:intergenic 35.0%
AATTGTCTATTGTTGTCTCC+TGG + chr7_3:59370309-59370328 Msa1113170:intron 35.0%
ATTGTCTATTGTTGTCTCCT+GGG + chr7_3:59370310-59370329 Msa1113170:intron 35.0%
TTGGAGAAGGAAAGAGAAAT+TGG - chr7_3:59370438-59370457 None:intergenic 35.0%
! ATGTGTTTTGCTGCTGATAA+TGG - chr7_3:59371036-59371055 None:intergenic 35.0%
GCCACTAATGAATATGAGAA+TGG - chr7_3:59371073-59371092 None:intergenic 35.0%
CGGCAATAACAGATTAGTAT+AGG - chr7_3:59371123-59371142 None:intergenic 35.0%
CGATTGTACTGTGTATTTGT+TGG + chr7_3:59371189-59371208 Msa1113170:intron 35.0%
! TACTGTGTATTTGTTGGTTG+CGG + chr7_3:59371195-59371214 Msa1113170:intron 35.0%
CCAACTCTTCAATTTCATCT+AGG - chr7_3:59371228-59371247 None:intergenic 35.0%
CCTAGATGAAATTGAAGAGT+TGG + chr7_3:59371225-59371244 Msa1113170:intron 35.0%
TTCAGAAACTCCAAATCTGA+AGG + chr7_3:59371268-59371287 Msa1113170:intron 35.0%
TAGAAGAACACCTTCAGATT+TGG - chr7_3:59371281-59371300 None:intergenic 35.0%
! CTCTATTTTCATTCTCCTAG+TGG + chr7_3:59371315-59371334 Msa1113170:intron 35.0%
TGGCATGTCATCTGATAATA+TGG + chr7_3:59371347-59371366 Msa1113170:intron 35.0%
GGCATGTCATCTGATAATAT+GGG + chr7_3:59371348-59371367 Msa1113170:intron 35.0%
GCATGTCATCTGATAATATG+GGG + chr7_3:59371349-59371368 Msa1113170:intron 35.0%
CATGATACTAAAGCATATGG+AGG - chr7_3:59371391-59371410 None:intergenic 35.0%
AGTATCATGCTTTCGTAACT+TGG + chr7_3:59371415-59371434 Msa1113170:intron 35.0%
CTTCGTATACTATTGTGCTT+GGG + chr7_3:59371508-59371527 Msa1113170:CDS 35.0%
ATACTATTGTGCTTGGGATT+TGG + chr7_3:59371514-59371533 Msa1113170:CDS 35.0%
ATACATGCTAGCATTCTAGT+AGG + chr7_3:59371627-59371646 Msa1113170:intron 35.0%
TGACATGGTTTATGCATCTA+CGG + chr7_3:59371694-59371713 Msa1113170:intron 35.0%
!!! TCTTTGAAACATCCTTTTCC+AGG + chr7_3:59371808-59371827 Msa1113170:intron 35.0%
!!! CTTTGAAACATCCTTTTCCA+GGG + chr7_3:59371809-59371828 Msa1113170:intron 35.0%
ATCCAATTAATAGTGAGGGA+TGG + chr7_3:59371982-59372001 Msa1113170:intron 35.0%
TACCATCCCTCACTATTAAT+TGG - chr7_3:59371987-59372006 None:intergenic 35.0%
TCAATTCTCTAACACTCTTC+AGG - chr7_3:59372126-59372145 None:intergenic 35.0%
ATTGACATCGAATGAAAGCA+GGG - chr7_3:59372240-59372259 None:intergenic 35.0%
TCTGAACTGTATGACATAGA+TGG + chr7_3:59372259-59372278 Msa1113170:intron 35.0%
CTGAACTGTATGACATAGAT+GGG + chr7_3:59372260-59372279 Msa1113170:intron 35.0%
AATTGGGTAAAGTACAGAGT+CGG - chr7_3:59372299-59372318 None:intergenic 35.0%
CATTCTGACTTTGGCAAATT+GGG - chr7_3:59372315-59372334 None:intergenic 35.0%
ACATTCTGACTTTGGCAAAT+TGG - chr7_3:59372316-59372335 None:intergenic 35.0%
AACAACTCACATTCTGACTT+TGG - chr7_3:59372324-59372343 None:intergenic 35.0%
AATAATAGCACCACCATACA+GGG - chr7_3:59372411-59372430 None:intergenic 35.0%
TAATAATAGCACCACCATAC+AGG - chr7_3:59372412-59372431 None:intergenic 35.0%
ATTGTTGAAGGTTATGTTGC+CGG + chr7_3:59372431-59372450 Msa1113170:intron 35.0%
AGAAATCACTATGTTGAAGG+TGG + chr7_3:59372638-59372657 Msa1113170:CDS 35.0%
TCTCCAGCTATACTCATTTG+TGG + chr7_3:59370138-59370157 Msa1113170:intron 40.0%
CAACCACAAATGAGTATAGC+TGG - chr7_3:59370144-59370163 None:intergenic 40.0%
CAGTTGTTCACGGAAAAACA+TGG - chr7_3:59370200-59370219 None:intergenic 40.0%
!! TTGGGAATTGTTAACGGGTT+AGG + chr7_3:59370481-59370500 Msa1113170:intron 40.0%
GCTTCGTATACTATTGTGCT+TGG + chr7_3:59371507-59371526 Msa1113170:CDS 40.0%
GAGAAAGCTGAGAAAGAACA+TGG + chr7_3:59371753-59371772 Msa1113170:intron 40.0%
AAGCTGAGAAAGAACATGGT+TGG + chr7_3:59371757-59371776 Msa1113170:intron 40.0%
GGAATACGATGATTCGCAAA+AGG + chr7_3:59372047-59372066 Msa1113170:CDS 40.0%
AAGCGTGAAGCTAAGCTTAA+GGG + chr7_3:59372084-59372103 Msa1113170:CDS 40.0%
AGAGAATTGATCTACAAGCG+CGG + chr7_3:59372136-59372155 Msa1113170:intron 40.0%
GATTGACATCGAATGAAAGC+AGG - chr7_3:59372241-59372260 None:intergenic 40.0%
ATAATAGCACCACCATACAG+GGG - chr7_3:59372410-59372429 None:intergenic 40.0%
CTGACATAGTGTTCAATTGC+AGG + chr7_3:59372475-59372494 Msa1113170:intron 40.0%
AGTGTTCAATTGCAGGTTCT+TGG + chr7_3:59372482-59372501 Msa1113170:intron 40.0%
GTGTTCAATTGCAGGTTCTT+GGG + chr7_3:59372483-59372502 Msa1113170:intron 40.0%
!! AAAGGAGCTTTGAGCTTGAA+AGG - chr7_3:59372596-59372615 None:intergenic 40.0%
TTTCAAGCTCAAAGCTCCTT+TGG + chr7_3:59372595-59372614 Msa1113170:CDS 40.0%
TTCAAGCTCAAAGCTCCTTT+GGG + chr7_3:59372596-59372615 Msa1113170:CDS 40.0%
CATCTCCTCTTCTTCTCTCT+CGG + chr7_3:59369910-59369929 Msa1113170:five_prime_UTR 45.0%
!! AGTTTAGCATCGGCAGTTCA+TGG + chr7_3:59370087-59370106 Msa1113170:CDS 45.0%
CACGAAGAAAGATGCATACC+TGG - chr7_3:59370113-59370132 None:intergenic 45.0%
GTTGTCACTCACTCACTCTA+AGG + chr7_3:59370396-59370415 Msa1113170:intron 45.0%
GCTGCCATGAGATTTATCTG+CGG + chr7_3:59370856-59370875 Msa1113170:intron 45.0%
CTGCCATGAGATTTATCTGC+GGG + chr7_3:59370857-59370876 Msa1113170:intron 45.0%
! TCTCCTAGTGGGTAATAAGC+TGG + chr7_3:59371327-59371346 Msa1113170:intron 45.0%
ATGCCAGCTTATTACCCACT+AGG - chr7_3:59371333-59371352 None:intergenic 45.0%
CATGGTTTATGCATCTACGG+AGG + chr7_3:59371697-59371716 Msa1113170:intron 45.0%
TTTATGCATCTACGGAGGTC+AGG + chr7_3:59371702-59371721 Msa1113170:intron 45.0%
AATGAGGGATTCCCTGGAAA+AGG - chr7_3:59371823-59371842 None:intergenic 45.0%
! TTTTCCAGGGAATCCCTCAT+TGG + chr7_3:59371822-59371841 Msa1113170:intron 45.0%
ATATCCAATGAGGGATTCCC+TGG - chr7_3:59371829-59371848 None:intergenic 45.0%
GAAGCGTGAAGCTAAGCTTA+AGG + chr7_3:59372083-59372102 Msa1113170:CDS 45.0%
TTGATCTACAAGCGCGGTTA+TGG + chr7_3:59372142-59372161 Msa1113170:CDS 45.0%
! GCGGTTATGGAAAGGTTGAT+AGG + chr7_3:59372155-59372174 Msa1113170:CDS 45.0%
TTGCAGGTTCTTGGGAAACA+TGG + chr7_3:59372491-59372510 Msa1113170:intron 45.0%
ATCCACGAGATCATGACTGT+TGG + chr7_3:59372536-59372555 Msa1113170:CDS 45.0%
ATCCAACAGTCATGATCTCG+TGG - chr7_3:59372541-59372560 None:intergenic 45.0%
TGTTGGATCTCACTTCAGAG+AGG + chr7_3:59372553-59372572 Msa1113170:CDS 45.0%
GAGAGGCAAACAACTTCCTA+TGG + chr7_3:59372570-59372589 Msa1113170:CDS 45.0%
CTTTGAGCTTGAAAGGCCAT+AGG - chr7_3:59372589-59372608 None:intergenic 45.0%
TTCTTCTTCATGCCACCCAA+AGG - chr7_3:59372614-59372633 None:intergenic 45.0%
! TATGTTGAAGGTGGTGATGC+TGG + chr7_3:59372647-59372666 Msa1113170:CDS 45.0%
! GTGGTGATGCTGGTATAACA+GGG + chr7_3:59372657-59372676 Msa1113170:CDS 45.0%
! GGATTTGTGTTTCTGAGCCC+AGG - chr7_3:59370330-59370349 None:intergenic 50.0%
GCACCCGCAGATAAATCTCA+TGG - chr7_3:59370863-59370882 None:intergenic 50.0%
ATAAGCTAGAGCAGCAGCCA+AGG + chr7_3:59371537-59371556 Msa1113170:CDS 50.0%
CGTGAAGCTAAGCTTAAGGG+TGG + chr7_3:59372087-59372106 Msa1113170:CDS 50.0%
CTACAAGCGCGGTTATGGAA+AGG + chr7_3:59372147-59372166 Msa1113170:CDS 50.0%
CTTGACCAATGTCCCCTGTA+TGG + chr7_3:59372395-59372414 Msa1113170:intron 50.0%
AAGCTCAAAGCTCCTTTGGG+TGG + chr7_3:59372599-59372618 Msa1113170:CDS 50.0%
! GGTGGTGATGCTGGTATAAC+AGG + chr7_3:59372656-59372675 Msa1113170:CDS 50.0%
GTGATGCTGGTATAACAGGG+AGG + chr7_3:59372660-59372679 Msa1113170:CDS 50.0%
GGTAGCCGAGAGAGAAGAAG+AGG - chr7_3:59369918-59369937 None:intergenic 55.0%
!!! TCTGCGGGTGCTGCTGATTT+TGG + chr7_3:59370872-59370891 Msa1113170:intron 55.0%
GACCAATGTCCCCTGTATGG+TGG + chr7_3:59372398-59372417 Msa1113170:intron 55.0%
CACCACCATACAGGGGACAT+TGG - chr7_3:59372403-59372422 None:intergenic 55.0%
!! AGCATCGGCAGTTCATGGCC+AGG + chr7_3:59370092-59370111 Msa1113170:CDS 60.0%
GCATCTACGGAGGTCAGGAG+AGG + chr7_3:59371707-59371726 Msa1113170:intron 60.0%
GAGGTCAGGAGAGGCTACAG+AGG + chr7_3:59371716-59371735 Msa1113170:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 59369908 59372712 59369908 ID=Msa1113170;Name=Msa1113170
chr7_3 mRNA 59369908 59372712 59369908 ID=Msa1113170-mRNA-1;Parent=Msa1113170;Name=Msa1113170-mRNA-1;_AED=0.20;_eAED=0.25;_QI=74|0.2|0.16|1|0.6|0.83|6|0|214
chr7_3 exon 59369908 59370113 59369908 ID=Msa1113170-mRNA-1:exon:13133;Parent=Msa1113170-mRNA-1
chr7_3 exon 59371440 59371558 59371440 ID=Msa1113170-mRNA-1:exon:13134;Parent=Msa1113170-mRNA-1
chr7_3 exon 59371694 59371700 59371694 ID=Msa1113170-mRNA-1:exon:13135;Parent=Msa1113170-mRNA-1
chr7_3 exon 59372039 59372130 59372039 ID=Msa1113170-mRNA-1:exon:13136;Parent=Msa1113170-mRNA-1
chr7_3 exon 59372138 59372216 59372138 ID=Msa1113170-mRNA-1:exon:13137;Parent=Msa1113170-mRNA-1
chr7_3 exon 59372497 59372712 59372497 ID=Msa1113170-mRNA-1:exon:13138;Parent=Msa1113170-mRNA-1
chr7_3 five_prime_UTR 59369908 59369981 59369908 ID=Msa1113170-mRNA-1:five_prime_utr;Parent=Msa1113170-mRNA-1
chr7_3 CDS 59369982 59370113 59369982 ID=Msa1113170-mRNA-1:cds;Parent=Msa1113170-mRNA-1
chr7_3 CDS 59371440 59371558 59371440 ID=Msa1113170-mRNA-1:cds;Parent=Msa1113170-mRNA-1
chr7_3 CDS 59371694 59371700 59371694 ID=Msa1113170-mRNA-1:cds;Parent=Msa1113170-mRNA-1
chr7_3 CDS 59372039 59372130 59372039 ID=Msa1113170-mRNA-1:cds;Parent=Msa1113170-mRNA-1
chr7_3 CDS 59372138 59372216 59372138 ID=Msa1113170-mRNA-1:cds;Parent=Msa1113170-mRNA-1
chr7_3 CDS 59372497 59372712 59372497 ID=Msa1113170-mRNA-1:cds;Parent=Msa1113170-mRNA-1
Gene Sequence

>Msa1113170

ATGCATTTTCTTTTTGTTGCTCCTGATATGAATAATCATAATTTTCTGCAGGGTCGAAGAGTATTGATCACCCCAAATACTAAACCCATTAAAGAGATCATTTCAAGTTTAGCATCGGCAGTTCATGGCCAGCTTACTACTTATAGCATGCTTAATGATCGTGTTCGCACTTGTAGAGTCTTAAAACATCGCAGAATCAGCTTCGTATACTATTGTGCTTGGGATTTGGATAAGCTAGAGCAGCAGCCAAGTGACATGAATGGTAAGGAATACGATGATTCGCAAAAGGAGTTGATTGCGTTGAAGCGTGAAGCTAAGCTTAAGGGTGGATTTTATGTTGATCCTGAAGAAGAATTGATCTACAAGCGCGGTTATGGAAAGGTTGATAGGCAAAGAATTGCTTTGACAGATAACTCTATCATTGAACAGGTTCTTGGGAAACATGGTATCATTTGCATTGAAGATCTCATCCACGAGATCATGACTGTTGGATCTCACTTCAGAGAGGCAAACAACTTCCTATGGCCTTTCAAGCTCAAAGCTCCTTTGGGTGGCATGAAGAAGAAGAAGAGAAATCACTATGTTGAAGGTGGTGATGCTGGTATAACAGGGAGGATTACATCAATGAACTCATTAGAAGGATGA

Protein sequence

>Msa1113170

MHFLFVAPDMNNHNFLQGRRVLITPNTKPIKEIISSLASAVHGQLTTYSMLNDRVRTCRVLKHRRISFVYYCAWDLDKLEQQPSDMNGKEYDDSQKELIALKREAKLKGGFYVDPEEELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEIMTVGSHFREANNFLWPFKLKAPLGGMKKKKRNHYVEGGDAGITGRITSMNSLEG*