Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098150 | sp|A3DF24|DNAJ_ACET2 | 53.226 | 62 | 24 | 2 | 149 | 210 | 7 | 63 | 8.46e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098150 | A0A072VD88 | 97.196 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 1.42e-151 | 428 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0098150 | Msa1365860 | 0.802283 | 6.037702e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098150 | MtrunA17_Chr1g0152051 | 97.196 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 2.74e-155 | 428 |
| Msa0098150 | MtrunA17_Chr3g0135221 | 58.768 | 211 | 64 | 3 | 21 | 211 | 13 | 220 | 3.13e-70 | 213 |
| Msa0098150 | MtrunA17_Chr3g0135211 | 44.186 | 215 | 103 | 5 | 1 | 213 | 1 | 200 | 3.25e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098150 | AT4G07990.2 | 57.944 | 214 | 79 | 6 | 5 | 210 | 4 | 214 | 2.46e-75 | 226 |
| Msa0098150 | AT4G07990.1 | 54.386 | 228 | 79 | 7 | 5 | 210 | 4 | 228 | 4.12e-71 | 216 |
| Msa0098150 | AT4G07990.3 | 55.385 | 195 | 76 | 6 | 5 | 191 | 4 | 195 | 4.25e-65 | 200 |
Find 66 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAAGGGAAACCTTAATTT+TGG | 0.120938 | 1_3:-4091838 | Msa0098150:three_prime_UTR |
| GTAATAAATACCCAAAATTA+AGG | 0.233384 | 1_3:+4091827 | None:intergenic |
| AACACACCACTACATGGTTT+TGG | 0.254535 | 1_3:-4094096 | Msa0098150:CDS |
| TTGAATACCAATCATCTCTT+TGG | 0.263215 | 1_3:+4094198 | None:intergenic |
| ATTCTTTCTTTCTTGTTGTA+TGG | 0.287118 | 1_3:+4091983 | None:intergenic |
| TTCAATACATAGCATCCTTC+AGG | 0.289173 | 1_3:+4091920 | None:intergenic |
| GAGCAGCCTAATGTGTATTT+AGG | 0.294540 | 1_3:-4091726 | Msa0098150:three_prime_UTR |
| AATTGAGAAAATAGAGATAT+TGG | 0.299984 | 1_3:-4095508 | Msa0098150:five_prime_UTR |
| TCTCTTTATAGGAAAGAATA+AGG | 0.308036 | 1_3:-4094319 | Msa0098150:intron |
| CGAGACATCCCAAGGGAAAA+TGG | 0.309017 | 1_3:-4094137 | Msa0098150:CDS |
| TTCAGGGTCCCCGGATTATC+AGG | 0.310365 | 1_3:+4091937 | None:intergenic |
| TGCAACCTTGCCTGATAATC+CGG | 0.323934 | 1_3:-4091947 | Msa0098150:three_prime_UTR |
| TTTATTTCAGCATCTGTATA+CGG | 0.325221 | 1_3:+4093197 | None:intergenic |
| TTAGAAGAAAATACGAGAAT+TGG | 0.328205 | 1_3:-4094256 | Msa0098150:CDS |
| CTCTTTCACAGACAGCATTT+AGG | 0.330462 | 1_3:-4092184 | Msa0098150:intron |
| AGTTCAAGAATTCAAGCTTT+GGG | 0.342435 | 1_3:-4095379 | Msa0098150:CDS |
| TACGAGAATTGGAAGGAAAA+TGG | 0.359437 | 1_3:-4094245 | Msa0098150:CDS |
| CCCAAAATTAAGGTTTCCCT+TGG | 0.413112 | 1_3:+4091837 | None:intergenic |
| GTATACAGATGCTGAAATAA+AGG | 0.418066 | 1_3:-4093195 | Msa0098150:intron |
| AATTGGAAGGAAAATGGTTC+TGG | 0.420102 | 1_3:-4094239 | Msa0098150:CDS |
| AAGTTCAAGAATTCAAGCTT+TGG | 0.435666 | 1_3:-4095380 | Msa0098150:CDS |
| GATCAAAACCAGGAGGATAA+AGG | 0.438257 | 1_3:-4092137 | Msa0098150:intron |
| AAGATGAAGAAGGTGATGAT+AGG | 0.450871 | 1_3:-4095419 | Msa0098150:CDS |
| AGCATTTCCAAAGAGATGAT+TGG | 0.472408 | 1_3:-4094205 | Msa0098150:CDS |
| CACAATGGTGTTGTTATCAT+AGG | 0.475563 | 1_3:-4091784 | Msa0098150:three_prime_UTR |
| TTCATACCTAAATACACATT+AGG | 0.477036 | 1_3:+4091720 | None:intergenic |
| AGAAGTAATGGATTCATATG+AGG | 0.488969 | 1_3:-4092006 | Msa0098150:CDS |
| GCAAGAGGAGTACGAGGAAG+AGG | 0.489481 | 1_3:-4094758 | Msa0098150:CDS |
| AAAAGAACCGCCTTTCGACC+TGG | 0.489496 | 1_3:+4094828 | None:intergenic |
| AAGACCTACCTTTATCCTCC+TGG | 0.491400 | 1_3:+4092129 | None:intergenic |
| TTCATTAACACACCACTACA+TGG | 0.491439 | 1_3:-4094102 | Msa0098150:CDS |
| TCAATACATAGCATCCTTCA+GGG | 0.495004 | 1_3:+4091921 | None:intergenic |
| GCAACCTTGCCTGATAATCC+GGG | 0.514861 | 1_3:-4091946 | Msa0098150:three_prime_UTR |
| AGCTAAGTTCAAAGAAGTAA+TGG | 0.518736 | 1_3:-4092018 | Msa0098150:CDS |
| AGAACTCACGGCGAAGGTGG+TGG | 0.531498 | 1_3:+4095323 | None:intergenic |
| AATTGCGCCGATCAGTCAAA+AGG | 0.536922 | 1_3:-4095543 | Msa0098150:five_prime_UTR |
| TTGTAGTTGTCCAGGTCGAA+AGG | 0.543788 | 1_3:-4094838 | Msa0098150:intron |
| TTCAAGAAGAAGCATGGAAG+CGG | 0.553375 | 1_3:-4094795 | Msa0098150:CDS |
| ATAGCATCCTTCAGGGTCCC+CGG | 0.556956 | 1_3:+4091928 | None:intergenic |
| GTTCAAGAATTCAAGCTTTG+GGG | 0.563262 | 1_3:-4095378 | Msa0098150:CDS |
| CGAGGAAGAGGCTGAGAGAG+TGG | 0.567175 | 1_3:-4094746 | Msa0098150:intron |
| CTAAGGTTGATGTAGTCCAC+TGG | 0.583757 | 1_3:-4091871 | Msa0098150:three_prime_UTR |
| ACTCACGGCGAAGGTGGTGG+CGG | 0.589497 | 1_3:+4095326 | None:intergenic |
| TGATAATCCGGGGACCCTGA+AGG | 0.590042 | 1_3:-4091935 | Msa0098150:three_prime_UTR |
| AGGCGTAGAACTCACGGCGA+AGG | 0.592392 | 1_3:+4095317 | None:intergenic |
| AAGAAAATACGAGAATTGGA+AGG | 0.602692 | 1_3:-4094252 | Msa0098150:CDS |
| AAAATTACCGAGACATCCCA+AGG | 0.612436 | 1_3:-4094145 | Msa0098150:CDS |
| TAAATGAAGGAAGATGAAGA+AGG | 0.617251 | 1_3:-4095429 | Msa0098150:CDS |
| ACGGGAATCTCATGCACCAG+TGG | 0.618115 | 1_3:-4095579 | Msa0098150:five_prime_UTR |
| ACAGACAGCATTTAGGACGA+AGG | 0.620598 | 1_3:-4092177 | Msa0098150:intron |
| CACTGGTATGCTGAAAACCA+AGG | 0.628442 | 1_3:-4091854 | Msa0098150:three_prime_UTR |
| CGGGAATCTCATGCACCAGT+GGG | 0.633713 | 1_3:-4095578 | Msa0098150:five_prime_UTR |
| CGTAGAACTCACGGCGAAGG+TGG | 0.635643 | 1_3:+4095320 | None:intergenic |
| GTACAATAAGCGATTGCAAG+AGG | 0.639039 | 1_3:-4094773 | Msa0098150:CDS |
| GTATTTATTACACAAGAGTG+TGG | 0.643148 | 1_3:-4091815 | Msa0098150:three_prime_UTR |
| GCGATTGCAAGAGGAGTACG+AGG | 0.657325 | 1_3:-4094764 | Msa0098150:CDS |
| TAGTTGTCCAGGTCGAAAGG+CGG | 0.658973 | 1_3:-4094835 | Msa0098150:CDS |
| ACTGGTATGCTGAAAACCAA+GGG | 0.660331 | 1_3:-4091853 | Msa0098150:three_prime_UTR |
| TAGCACCAATTAAACCGAAG+AGG | 0.665737 | 1_3:+4095349 | None:intergenic |
| CAAGACCCAAAACCATGTAG+TGG | 0.666804 | 1_3:+4094090 | None:intergenic |
| GGTCCCCGGATTATCAGGCA+AGG | 0.667226 | 1_3:+4091942 | None:intergenic |
| CAACCTTGCCTGATAATCCG+GGG | 0.674984 | 1_3:-4091945 | Msa0098150:three_prime_UTR |
| GTATCATCCTGATCAAAACC+AGG | 0.678892 | 1_3:-4092147 | Msa0098150:CDS |
| AAATTACCGAGACATCCCAA+GGG | 0.730776 | 1_3:-4094144 | Msa0098150:CDS |
| TCATCCTGATCAAAACCAGG+AGG | 0.738432 | 1_3:-4092144 | Msa0098150:CDS |
| AGTGTGGTGTTGTATCACAA+TGG | 0.759462 | 1_3:-4091799 | Msa0098150:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAAATATTTTTTATT+GGG | + | chr1_3:4093863-4093882 | None:intergenic | 0.0% |
| !!! | AAAAATTAAATATTTTTTAT+TGG | + | chr1_3:4093864-4093883 | None:intergenic | 0.0% |
| !!! | AATAAAAAATATTTAATTTT+TGG | - | chr1_3:4093863-4093882 | Msa0098150:intron | 0.0% |
| !!! | TTTTTTTTTTTTGTAAATGA+AGG | - | chr1_3:4091803-4091822 | Msa0098150:three_prime_UTR | 10.0% |
| !! | AAAAATGAAAATGAAATAAA+TGG | + | chr1_3:4091985-4092004 | None:intergenic | 10.0% |
| !!! | AGTTTTTATTTTCATTTTTT+TGG | - | chr1_3:4092312-4092331 | Msa0098150:intron | 10.0% |
| !! | TAAAATTCTTTATTCTTTAT+AGG | + | chr1_3:4093315-4093334 | None:intergenic | 10.0% |
| !!! | TTATTTGATTATTTTTGAAA+TGG | - | chr1_3:4095574-4095593 | Msa0098150:five_prime_UTR | 10.0% |
| !! | AAATAAATGGAATAAGAAAT+TGG | + | chr1_3:4091972-4091991 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTACGTCATTTT+AGG | - | chr1_3:4092006-4092025 | Msa0098150:CDS | 15.0% |
| !! | CGTGATTTATTAATAAATAA+AGG | - | chr1_3:4093989-4094008 | Msa0098150:intron | 15.0% |
| !! | TTTCATTTAAGTAAGAATAA+TGG | + | chr1_3:4094243-4094262 | None:intergenic | 15.0% |
| !!! | ATTTTCACATTTTTTTTTTG+AGG | + | chr1_3:4094320-4094339 | None:intergenic | 15.0% |
| !! | TATAATTTACAAACATATTG+TGG | + | chr1_3:4094385-4094404 | None:intergenic | 15.0% |
| !! | AATTGAGAAAATAGAGATAT+TGG | - | chr1_3:4091737-4091756 | Msa0098150:three_prime_UTR | 20.0% |
| !!! | GTTACGTTTTTTTTTTTAGA+CGG | + | chr1_3:4092633-4092652 | None:intergenic | 20.0% |
| !! | AAAAAATTCTTTGTCACAAA+AGG | + | chr1_3:4092694-4092713 | None:intergenic | 20.0% |
| !! | TATATGTGACTAATCATAAA+TGG | + | chr1_3:4092842-4092861 | None:intergenic | 20.0% |
| !! | ATATCAGAATGCTAAAATAT+AGG | - | chr1_3:4093236-4093255 | Msa0098150:intron | 20.0% |
| !!! | CCATATTATGCTTTTATATT+TGG | + | chr1_3:4093525-4093544 | None:intergenic | 20.0% |
| !!! | CCAAATATAAAAGCATAATA+TGG | - | chr1_3:4093522-4093541 | Msa0098150:intron | 20.0% |
| !! | TAAATGTGATTTGATAGATA+TGG | - | chr1_3:4093699-4093718 | Msa0098150:intron | 20.0% |
| !!! | ATAACAATAACTTTTCTAAG+TGG | - | chr1_3:4093768-4093787 | Msa0098150:intron | 20.0% |
| !!! | CTCTTTTTAACATAATATCT+TGG | - | chr1_3:4094085-4094104 | Msa0098150:intron | 20.0% |
| !!! | TTTTCATTGATGTTATTTGA+CGG | - | chr1_3:4094202-4094221 | Msa0098150:CDS | 20.0% |
| !!! | ATTATACCAACTATTTTGAT+TGG | - | chr1_3:4094399-4094418 | Msa0098150:intron | 20.0% |
| !!! | TTTGACCAGTTTTATATAAA+TGG | + | chr1_3:4094677-4094696 | None:intergenic | 20.0% |
| !! | ATTTATATAAAACTGGTCAA+AGG | - | chr1_3:4094676-4094695 | Msa0098150:intron | 20.0% |
| !! | TTTATATAAAACTGGTCAAA+GGG | - | chr1_3:4094677-4094696 | Msa0098150:intron | 20.0% |
| !! | TATTACCAAAAATGAAACAA+AGG | + | chr1_3:4095009-4095028 | None:intergenic | 20.0% |
| !! | CATTATTACTTAATGATTCA+TGG | - | chr1_3:4095177-4095196 | Msa0098150:intron | 20.0% |
| !!! | GAAAATAAGCATAATTTTTG+AGG | - | chr1_3:4095345-4095364 | Msa0098150:CDS | 20.0% |
| !! | GTAATAAATACCCAAAATTA+AGG | + | chr1_3:4095421-4095440 | None:intergenic | 20.0% |
| !! | TGTATTTAGGTATGAAAAAA+TGG | - | chr1_3:4095532-4095551 | Msa0098150:five_prime_UTR | 20.0% |
| ! | ACTCTATATTCTGTTAACAT+GGG | - | chr1_3:4092283-4092302 | Msa0098150:intron | 25.0% |
| !! | ATCTTTGTGAGTTTTTACTT+CGG | - | chr1_3:4092543-4092562 | Msa0098150:intron | 25.0% |
| !!! | ACCTGATTTTATTGTTATTG+TGG | - | chr1_3:4092566-4092585 | Msa0098150:intron | 25.0% |
| ! | ACCACAATAACAATAAAATC+AGG | + | chr1_3:4092570-4092589 | None:intergenic | 25.0% |
| !! | TATCATGTGATCTTTGAAAA+TGG | - | chr1_3:4092661-4092680 | Msa0098150:intron | 25.0% |
| !! | ATCATGTGATCTTTGAAAAT+GGG | - | chr1_3:4092662-4092681 | Msa0098150:intron | 25.0% |
| ! | AATCTCTATTAGTTGATTGT+AGG | - | chr1_3:4092720-4092739 | Msa0098150:intron | 25.0% |
| ! | TATTAGTTGATTGTAGGAAT+TGG | - | chr1_3:4092726-4092745 | Msa0098150:intron | 25.0% |
| !! | TGTTTCTATCTTCTCTTTAT+AGG | - | chr1_3:4092915-4092934 | Msa0098150:intron | 25.0% |
| ! | TCTCTTTATAGGAAAGAATA+AGG | - | chr1_3:4092926-4092945 | Msa0098150:intron | 25.0% |
| ! | TTAGAAGAAAATACGAGAAT+TGG | - | chr1_3:4092989-4093008 | Msa0098150:intron | 25.0% |
| ! | TTAGCATTCTGATATAATTG+TGG | + | chr1_3:4093231-4093250 | None:intergenic | 25.0% |
| ! | ACTGGAATATTGTAAGAAAA+GGG | + | chr1_3:4093483-4093502 | None:intergenic | 25.0% |
| ! | AACTGGAATATTGTAAGAAA+AGG | + | chr1_3:4093484-4093503 | None:intergenic | 25.0% |
| ! | TACAATATTCCAGTTATGTA+AGG | - | chr1_3:4093489-4093508 | Msa0098150:intron | 25.0% |
| ! | TTCTAAGTGGATATATTGTA+TGG | - | chr1_3:4093781-4093800 | Msa0098150:intron | 25.0% |
| ! | ATGGTATATGATTAAAGCAA+GGG | + | chr1_3:4093931-4093950 | None:intergenic | 25.0% |
| ! | TTTATTTCAGCATCTGTATA+CGG | + | chr1_3:4094051-4094070 | None:intergenic | 25.0% |
| !!! | CTAGTTTTGTACTGTTTTTT+TGG | - | chr1_3:4094265-4094284 | Msa0098150:CDS | 25.0% |
| ! | TCAAATATATTCTGCCTATA+CGG | - | chr1_3:4094492-4094511 | Msa0098150:intron | 25.0% |
| !! | CTTTGCCATTTATATAAAAC+TGG | - | chr1_3:4094669-4094688 | Msa0098150:intron | 25.0% |
| ! | TCTCTAACATATATGATTAG+TGG | - | chr1_3:4094789-4094808 | Msa0098150:CDS | 25.0% |
| ! | CTCTAACATATATGATTAGT+GGG | - | chr1_3:4094790-4094809 | Msa0098150:CDS | 25.0% |
| ! | TACAGAAAATCAAGGTAAAA+AGG | + | chr1_3:4094914-4094933 | None:intergenic | 25.0% |
| ! | GTAAGTATTACAGAAAATCA+AGG | + | chr1_3:4094922-4094941 | None:intergenic | 25.0% |
| !!! | TTTGACCTTTGTTTCATTTT+TGG | - | chr1_3:4095001-4095020 | Msa0098150:intron | 25.0% |
| !! | ATTCTTTCTTTCTTGTTGTA+TGG | + | chr1_3:4095265-4095284 | None:intergenic | 25.0% |
| ! | TTCATACCTAAATACACATT+AGG | + | chr1_3:4095528-4095547 | None:intergenic | 25.0% |
| ! | TTTAGGTATGAAAAAATGGT+TGG | - | chr1_3:4095536-4095555 | Msa0098150:five_prime_UTR | 25.0% |
| TAAATGAAGGAAGATGAAGA+AGG | - | chr1_3:4091816-4091835 | Msa0098150:three_prime_UTR | 30.0% | |
| AAGTTCAAGAATTCAAGCTT+TGG | - | chr1_3:4091865-4091884 | Msa0098150:three_prime_UTR | 30.0% | |
| AGTTCAAGAATTCAAGCTTT+GGG | - | chr1_3:4091866-4091885 | Msa0098150:three_prime_UTR | 30.0% | |
| ! | ATTTTCCTCTTCGGTTTAAT+TGG | - | chr1_3:4091891-4091910 | Msa0098150:three_prime_UTR | 30.0% |
| GGAAATGAAAAGAACAAAGA+AGG | + | chr1_3:4091951-4091970 | None:intergenic | 30.0% | |
| CGCTTATCATTCATGATAAA+AGG | + | chr1_3:4092068-4092087 | None:intergenic | 30.0% | |
| ! | TTTTCATAAGTTCTGCCAAA+TGG | - | chr1_3:4092208-4092227 | Msa0098150:intron | 30.0% |
| AACAGAATATAGAGTCTCTT+TGG | + | chr1_3:4092278-4092297 | None:intergenic | 30.0% | |
| GACTCTATATTCTGTTAACA+TGG | - | chr1_3:4092282-4092301 | Msa0098150:intron | 30.0% | |
| TAAGTGAAGTGACTATCATA+AGG | + | chr1_3:4092765-4092784 | None:intergenic | 30.0% | |
| AAGAAAATACGAGAATTGGA+AGG | - | chr1_3:4092993-4093012 | Msa0098150:intron | 30.0% | |
| TTGAATACCAATCATCTCTT+TGG | + | chr1_3:4093050-4093069 | None:intergenic | 30.0% | |
| !! | AACAAACTTTTAGAGACCAA+TGG | - | chr1_3:4093076-4093095 | Msa0098150:intron | 30.0% |
| TCAGATCATTGTAGCAATTA+AGG | + | chr1_3:4093405-4093424 | None:intergenic | 30.0% | |
| ACCTGAAAATGTGTTATAAG+TGG | - | chr1_3:4093447-4093466 | Msa0098150:intron | 30.0% | |
| CCTGAAAATGTGTTATAAGT+GGG | - | chr1_3:4093448-4093467 | Msa0098150:intron | 30.0% | |
| GAATATTGTAAGAAAAGGGA+TGG | + | chr1_3:4093479-4093498 | None:intergenic | 30.0% | |
| CTAATTCATCCTTACATAAC+TGG | + | chr1_3:4093501-4093520 | None:intergenic | 30.0% | |
| CAGTTATGTAAGGATGAATT+AGG | - | chr1_3:4093499-4093518 | Msa0098150:intron | 30.0% | |
| TGATATAATGTTTGTCCCAA+CGG | + | chr1_3:4093568-4093587 | None:intergenic | 30.0% | |
| CAAATATGCTTATAAAGTGG+CGG | + | chr1_3:4093646-4093665 | None:intergenic | 30.0% | |
| CTGCAAATATGCTTATAAAG+TGG | + | chr1_3:4093649-4093668 | None:intergenic | 30.0% | |
| ATTTGATAGATATGGTGTGT+GGG | - | chr1_3:4093707-4093726 | Msa0098150:intron | 30.0% | |
| ATATTGTATGGTACATCTAG+AGG | - | chr1_3:4093793-4093812 | Msa0098150:intron | 30.0% | |
| TATTGTATGGTACATCTAGA+GGG | - | chr1_3:4093794-4093813 | Msa0098150:intron | 30.0% | |
| TGGTATATGATTAAAGCAAG+GGG | + | chr1_3:4093930-4093949 | None:intergenic | 30.0% | |
| GATGGTATATGATTAAAGCA+AGG | + | chr1_3:4093932-4093951 | None:intergenic | 30.0% | |
| GTATACAGATGCTGAAATAA+AGG | - | chr1_3:4094050-4094069 | Msa0098150:intron | 30.0% | |
| CATATGATACATATGACAGA+GGG | + | chr1_3:4094168-4094187 | None:intergenic | 30.0% | |
| !! | TGAAATGCTCTAAAGTACAA+AGG | - | chr1_3:4094461-4094480 | Msa0098150:intron | 30.0% |
| GAAGAGTGAAAAAAATACGA+CGG | + | chr1_3:4094583-4094602 | None:intergenic | 30.0% | |
| ! | CTCAATTTATTTGCTGACTA+AGG | - | chr1_3:4094602-4094621 | Msa0098150:intron | 30.0% |
| AGCTAAGTTCAAAGAAGTAA+TGG | - | chr1_3:4095227-4095246 | Msa0098150:intron | 30.0% | |
| !! | AGAAGTAATGGATTCATATG+AGG | - | chr1_3:4095239-4095258 | Msa0098150:intron | 30.0% |
| !!! | AAGCATAATTTTTGAGGTTG+TGG | - | chr1_3:4095351-4095370 | Msa0098150:CDS | 30.0% |
| GTATTTATTACACAAGAGTG+TGG | - | chr1_3:4095430-4095449 | Msa0098150:exon | 30.0% | |
| AAGATGAAGAAGGTGATGAT+AGG | - | chr1_3:4091826-4091845 | Msa0098150:three_prime_UTR | 35.0% | |
| GTTCAAGAATTCAAGCTTTG+GGG | - | chr1_3:4091867-4091886 | Msa0098150:three_prime_UTR | 35.0% | |
| TAAACACTTGTGAGACCATT+TGG | + | chr1_3:4092226-4092245 | None:intergenic | 35.0% | |
| ! | TGAACTTTTTGTAGTTGTCC+AGG | - | chr1_3:4092399-4092418 | Msa0098150:intron | 35.0% |
| ! | ATGTGATCTTTGAAAATGGG+AGG | - | chr1_3:4092665-4092684 | Msa0098150:intron | 35.0% |
| TGACTATCATAAGGCTCAAT+GGG | + | chr1_3:4092756-4092775 | None:intergenic | 35.0% | |
| TACGAGAATTGGAAGGAAAA+TGG | - | chr1_3:4093000-4093019 | Msa0098150:intron | 35.0% | |
| AATTGGAAGGAAAATGGTTC+TGG | - | chr1_3:4093006-4093025 | Msa0098150:intron | 35.0% | |
| AGCATTTCCAAAGAGATGAT+TGG | - | chr1_3:4093040-4093059 | Msa0098150:intron | 35.0% | |
| ! | TGTCTCGGTAATTTTTCCAT+TGG | + | chr1_3:4093095-4093114 | None:intergenic | 35.0% |
| ! | TTATGCTTCCATTTTCCCTT+GGG | + | chr1_3:4093119-4093138 | None:intergenic | 35.0% |
| ! | TTTATGCTTCCATTTTCCCT+TGG | + | chr1_3:4093120-4093139 | None:intergenic | 35.0% |
| TTCATTAACACACCACTACA+TGG | - | chr1_3:4093143-4093162 | Msa0098150:intron | 35.0% | |
| ! | CCCACTTATAACACATTTTC+AGG | + | chr1_3:4093451-4093470 | None:intergenic | 35.0% |
| GTTGGGACAAACATTATATC+AGG | - | chr1_3:4093567-4093586 | Msa0098150:intron | 35.0% | |
| CAAACATTATATCAGGCACT+CGG | - | chr1_3:4093574-4093593 | Msa0098150:intron | 35.0% | |
| AAACATTATATCAGGCACTC+GGG | - | chr1_3:4093575-4093594 | Msa0098150:intron | 35.0% | |
| GATTTGATAGATATGGTGTG+TGG | - | chr1_3:4093706-4093725 | Msa0098150:intron | 35.0% | |
| TTTGATAGATATGGTGTGTG+GGG | - | chr1_3:4093708-4093727 | Msa0098150:intron | 35.0% | |
| ! | CGAACATTTTCTACTTCTCA+AGG | + | chr1_3:4093748-4093767 | None:intergenic | 35.0% |
| ! | TTGCTAACTTTTGATGCAGA+TGG | + | chr1_3:4093950-4093969 | None:intergenic | 35.0% |
| !! | TCCTTCTTTTGATTGATCTC+AGG | - | chr1_3:4094013-4094032 | Msa0098150:intron | 35.0% |
| ACCTGAGATCAATCAAAAGA+AGG | + | chr1_3:4094017-4094036 | None:intergenic | 35.0% | |
| CCATATGATACATATGACAG+AGG | + | chr1_3:4094169-4094188 | None:intergenic | 35.0% | |
| CCTCTGTCATATGTATCATA+TGG | - | chr1_3:4094166-4094185 | Msa0098150:CDS | 35.0% | |
| ! | CATTGATGTTATTTGACGGA+TGG | - | chr1_3:4094206-4094225 | Msa0098150:CDS | 35.0% |
| !!! | CAACTATTTTGATTGGCCTT+CGG | - | chr1_3:4094406-4094425 | Msa0098150:intron | 35.0% |
| ! | ATACCATAGGATTTTACCGA+AGG | + | chr1_3:4094425-4094444 | None:intergenic | 35.0% |
| TTCGGTAAAATCCTATGGTA+TGG | - | chr1_3:4094424-4094443 | Msa0098150:intron | 35.0% | |
| !! | TGTACTTTAGAGCATTTCAC+AGG | + | chr1_3:4094460-4094479 | None:intergenic | 35.0% |
| ATATATTCTGCCTATACGGA+TGG | - | chr1_3:4094496-4094515 | Msa0098150:intron | 35.0% | |
| !! | AGGGTACATGATTTTGATGA+TGG | - | chr1_3:4094696-4094715 | Msa0098150:intron | 35.0% |
| !! | GGGTACATGATTTTGATGAT+GGG | - | chr1_3:4094697-4094716 | Msa0098150:intron | 35.0% |
| !!! | GGTACATGATTTTGATGATG+GGG | - | chr1_3:4094698-4094717 | Msa0098150:intron | 35.0% |
| TCAATACATAGCATCCTTCA+GGG | + | chr1_3:4095327-4095346 | None:intergenic | 35.0% | |
| TTCAATACATAGCATCCTTC+AGG | + | chr1_3:4095328-4095347 | None:intergenic | 35.0% | |
| !!! | AATTTTTGAGGTTGTGGCTA+AGG | - | chr1_3:4095357-4095376 | Msa0098150:CDS | 35.0% |
| ! | ACCAAGGGAAACCTTAATTT+TGG | - | chr1_3:4095407-4095426 | Msa0098150:CDS | 35.0% |
| ! | CCAAGGGAAACCTTAATTTT+GGG | - | chr1_3:4095408-4095427 | Msa0098150:CDS | 35.0% |
| !! | CACAATGGTGTTGTTATCAT+AGG | - | chr1_3:4095461-4095480 | Msa0098150:five_prime_UTR | 35.0% |
| !!! | GGAGCCATTGATTTTTATGT+CGG | - | chr1_3:4095482-4095501 | Msa0098150:five_prime_UTR | 35.0% |
| !!! | GAGCCATTGATTTTTATGTC+GGG | - | chr1_3:4095483-4095502 | Msa0098150:five_prime_UTR | 35.0% |
| GTTCCCGACATAAAAATCAA+TGG | + | chr1_3:4095489-4095508 | None:intergenic | 35.0% | |
| ! | ATTTGCGTTTTCTTTCCCAC+TGG | + | chr1_3:4091685-4091704 | None:intergenic | 40.0% |
| !! | GCTTTCTCCTTTTGACTGAT+CGG | + | chr1_3:4091712-4091731 | None:intergenic | 40.0% |
| !! | CTTTGGGGAATTTTCCTCTT+CGG | - | chr1_3:4091882-4091901 | Msa0098150:three_prime_UTR | 40.0% |
| TAGCACCAATTAAACCGAAG+AGG | + | chr1_3:4091899-4091918 | None:intergenic | 40.0% | |
| !! | CAGCTTTTCAAGAAGAAGCA+TGG | - | chr1_3:4092444-4092463 | Msa0098150:intron | 40.0% |
| ! | TTCAAGAAGAAGCATGGAAG+CGG | - | chr1_3:4092450-4092469 | Msa0098150:intron | 40.0% |
| GTACAATAAGCGATTGCAAG+AGG | - | chr1_3:4092472-4092491 | Msa0098150:intron | 40.0% | |
| GACTATCATAAGGCTCAATG+GGG | + | chr1_3:4092755-4092774 | None:intergenic | 40.0% | |
| GTGACTATCATAAGGCTCAA+TGG | + | chr1_3:4092757-4092776 | None:intergenic | 40.0% | |
| TCATAAGTGTCTATCACACG+TGG | + | chr1_3:4092801-4092820 | None:intergenic | 40.0% | |
| TCAGACGTGACTATCATTTG+TGG | + | chr1_3:4092879-4092898 | None:intergenic | 40.0% | |
| TCACGTCTGAGAAGTCATTT+AGG | - | chr1_3:4092889-4092908 | Msa0098150:intron | 40.0% | |
| AAAATTACCGAGACATCCCA+AGG | - | chr1_3:4093100-4093119 | Msa0098150:intron | 40.0% | |
| AAATTACCGAGACATCCCAA+GGG | - | chr1_3:4093101-4093120 | Msa0098150:intron | 40.0% | |
| ! | AACACACCACTACATGGTTT+TGG | - | chr1_3:4093149-4093168 | Msa0098150:intron | 40.0% |
| ! | ACACACCACTACATGGTTTT+GGG | - | chr1_3:4093150-4093169 | Msa0098150:intron | 40.0% |
| AGAGTCTATTCAAGATCCGT+TGG | - | chr1_3:4093549-4093568 | Msa0098150:intron | 40.0% | |
| GAGTCTATTCAAGATCCGTT+GGG | - | chr1_3:4093550-4093569 | Msa0098150:intron | 40.0% | |
| TTGATAGATATGGTGTGTGG+GGG | - | chr1_3:4093709-4093728 | Msa0098150:intron | 40.0% | |
| ACATATGACAGAGGGTGATA+GGG | + | chr1_3:4094160-4094179 | None:intergenic | 40.0% | |
| TACATATGACAGAGGGTGAT+AGG | + | chr1_3:4094161-4094180 | None:intergenic | 40.0% | |
| CGAAGGCCAATCAAAATAGT+TGG | + | chr1_3:4094408-4094427 | None:intergenic | 40.0% | |
| ! | AGAGCATTTCACAGGTCATT+TGG | + | chr1_3:4094452-4094471 | None:intergenic | 40.0% |
| TTCTCACAATCCATCCGTAT+AGG | + | chr1_3:4094509-4094528 | None:intergenic | 40.0% | |
| GAGAGAAAGAGAAGAGGAAT+GGG | + | chr1_3:4094639-4094658 | None:intergenic | 40.0% | |
| AGAGAGAAAGAGAAGAGGAA+TGG | + | chr1_3:4094640-4094659 | None:intergenic | 40.0% | |
| CAATAAATAGTCCGTAGGCT+TGG | - | chr1_3:4094721-4094740 | Msa0098150:intron | 40.0% | |
| CTCTTTCACAGACAGCATTT+AGG | - | chr1_3:4095061-4095080 | Msa0098150:intron | 40.0% | |
| GTATCATCCTGATCAAAACC+AGG | - | chr1_3:4095098-4095117 | Msa0098150:intron | 40.0% | |
| !!! | TTATCCTCCTGGTTTTGATC+AGG | + | chr1_3:4095108-4095127 | None:intergenic | 40.0% |
| GATCAAAACCAGGAGGATAA+AGG | - | chr1_3:4095108-4095127 | Msa0098150:intron | 40.0% | |
| AAAACCAGGAGGATAAAGGT+AGG | - | chr1_3:4095112-4095131 | Msa0098150:intron | 40.0% | |
| TGGATGTGAAAATGTGACAG+AGG | - | chr1_3:4095197-4095216 | Msa0098150:intron | 40.0% | |
| ACTGGTATGCTGAAAACCAA+GGG | - | chr1_3:4095392-4095411 | Msa0098150:CDS | 40.0% | |
| CCCAAAATTAAGGTTTCCCT+TGG | + | chr1_3:4095411-4095430 | None:intergenic | 40.0% | |
| !! | AGTGTGGTGTTGTATCACAA+TGG | - | chr1_3:4095446-4095465 | Msa0098150:exon | 40.0% |
| GAGCAGCCTAATGTGTATTT+AGG | - | chr1_3:4095519-4095538 | Msa0098150:five_prime_UTR | 40.0% | |
| ! | AATTGCGCCGATCAGTCAAA+AGG | - | chr1_3:4091702-4091721 | Msa0098150:three_prime_UTR | 45.0% |
| ! | CAAAGAAGGCGTAGAACTCA+CGG | + | chr1_3:4091937-4091956 | None:intergenic | 45.0% |
| TTGTAGTTGTCCAGGTCGAA+AGG | - | chr1_3:4092407-4092426 | Msa0098150:intron | 45.0% | |
| ! | CATTTTCCCTTGGGATGTCT+CGG | + | chr1_3:4093110-4093129 | None:intergenic | 45.0% |
| CAAGACCCAAAACCATGTAG+TGG | + | chr1_3:4093158-4093177 | None:intergenic | 45.0% | |
| !!! | ACATGGTTTTGGGTCTTGAC+AGG | - | chr1_3:4093160-4093179 | Msa0098150:intron | 45.0% |
| ATTATATCAGGCACTCGGGT+TGG | - | chr1_3:4093579-4093598 | Msa0098150:intron | 45.0% | |
| TTATATCAGGCACTCGGGTT+GGG | - | chr1_3:4093580-4093599 | Msa0098150:intron | 45.0% | |
| !! | AGCCAGTTTTGTGACGTTGT+TGG | + | chr1_3:4093607-4093626 | None:intergenic | 45.0% |
| !! | CGTCACAAAACTGGCTTGTA+AGG | - | chr1_3:4093611-4093630 | Msa0098150:intron | 45.0% |
| !! | AAAACTGGCTTGTAAGGCGA+GGG | - | chr1_3:4093617-4093636 | Msa0098150:intron | 45.0% |
| GACCATATCTCACTCAACGT+AGG | - | chr1_3:4093668-4093687 | Msa0098150:intron | 45.0% | |
| AGCCTACGTTGAGTGAGATA+TGG | + | chr1_3:4093673-4093692 | None:intergenic | 45.0% | |
| CATATGACAGAGGGTGATAG+GGG | + | chr1_3:4094159-4094178 | None:intergenic | 45.0% | |
| TGGCCTTCGGTAAAATCCTA+TGG | - | chr1_3:4094419-4094438 | Msa0098150:intron | 45.0% | |
| GTCATTTGGCACCATACCAT+AGG | + | chr1_3:4094438-4094457 | None:intergenic | 45.0% | |
| ACGCAAGAGAGAAAGAGAAG+AGG | + | chr1_3:4094645-4094664 | None:intergenic | 45.0% | |
| TGGGGCAATAAATAGTCCGT+AGG | - | chr1_3:4094716-4094735 | Msa0098150:intron | 45.0% | |
| CCACAAAACTTCCAAGCCTA+CGG | + | chr1_3:4094735-4094754 | None:intergenic | 45.0% | |
| ! | ACAGACAGCATTTAGGACGA+AGG | - | chr1_3:4095068-4095087 | Msa0098150:intron | 45.0% |
| TCATCCTGATCAAAACCAGG+AGG | - | chr1_3:4095101-4095120 | Msa0098150:intron | 45.0% | |
| AAGACCTACCTTTATCCTCC+TGG | + | chr1_3:4095119-4095138 | None:intergenic | 45.0% | |
| TGCAACCTTGCCTGATAATC+CGG | - | chr1_3:4095298-4095317 | Msa0098150:intron | 45.0% | |
| !! | CTAAGGTTGATGTAGTCCAC+TGG | - | chr1_3:4095374-4095393 | Msa0098150:CDS | 45.0% |
| !! | CTTGGTTTTCAGCATACCAG+TGG | + | chr1_3:4095393-4095412 | None:intergenic | 45.0% |
| CACTGGTATGCTGAAAACCA+AGG | - | chr1_3:4095391-4095410 | Msa0098150:CDS | 45.0% | |
| TAGTTGTCCAGGTCGAAAGG+CGG | - | chr1_3:4092410-4092429 | Msa0098150:intron | 50.0% | |
| AAAAGAACCGCCTTTCGACC+TGG | + | chr1_3:4092420-4092439 | None:intergenic | 50.0% | |
| CGAGACATCCCAAGGGAAAA+TGG | - | chr1_3:4093108-4093127 | Msa0098150:intron | 50.0% | |
| TGGGTCTTGACAGGTACTCT+CGG | - | chr1_3:4093169-4093188 | Msa0098150:intron | 50.0% | |
| ! | TATATCAGGCACTCGGGTTG+GGG | - | chr1_3:4093581-4093600 | Msa0098150:intron | 50.0% |
| GGCCAACAACGTCACAAAAC+TGG | - | chr1_3:4093602-4093621 | Msa0098150:intron | 50.0% | |
| !! | CAAAACTGGCTTGTAAGGCG+AGG | - | chr1_3:4093616-4093635 | Msa0098150:intron | 50.0% |
| ! | CCGTAGGCTTGGAAGTTTTG+TGG | - | chr1_3:4094732-4094751 | Msa0098150:intron | 50.0% |
| GCAACCTTGCCTGATAATCC+GGG | - | chr1_3:4095299-4095318 | Msa0098150:intron | 50.0% | |
| CAACCTTGCCTGATAATCCG+GGG | - | chr1_3:4095300-4095319 | Msa0098150:intron | 50.0% | |
| CGGGAATCTCATGCACCAGT+GGG | - | chr1_3:4091667-4091686 | Msa0098150:three_prime_UTR | 55.0% | |
| ! | GCGATTGCAAGAGGAGTACG+AGG | - | chr1_3:4092481-4092500 | Msa0098150:intron | 55.0% |
| ! | GCAAGAGGAGTACGAGGAAG+AGG | - | chr1_3:4092487-4092506 | Msa0098150:intron | 55.0% |
| TTCAGGGTCCCCGGATTATC+AGG | + | chr1_3:4095311-4095330 | None:intergenic | 55.0% | |
| TGATAATCCGGGGACCCTGA+AGG | - | chr1_3:4095310-4095329 | Msa0098150:intron | 55.0% | |
| ATAGCATCCTTCAGGGTCCC+CGG | + | chr1_3:4095320-4095339 | None:intergenic | 55.0% | |
| AGAACTCACGGCGAAGGTGG+TGG | + | chr1_3:4091925-4091944 | None:intergenic | 60.0% | |
| CGTAGAACTCACGGCGAAGG+TGG | + | chr1_3:4091928-4091947 | None:intergenic | 60.0% | |
| AGGCGTAGAACTCACGGCGA+AGG | + | chr1_3:4091931-4091950 | None:intergenic | 60.0% | |
| CGAGGAAGAGGCTGAGAGAG+TGG | - | chr1_3:4092499-4092518 | Msa0098150:intron | 60.0% | |
| !! | ACTGGCTTGTAAGGCGAGGG+AGG | - | chr1_3:4093620-4093639 | Msa0098150:intron | 60.0% |
| GGTCCCCGGATTATCAGGCA+AGG | + | chr1_3:4095306-4095325 | None:intergenic | 60.0% | |
| ! | ACTCACGGCGAAGGTGGTGG+CGG | + | chr1_3:4091922-4091941 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4091667 | 4095600 | 4091667 | ID=Msa0098150;Name=Msa0098150 |
| chr1_3 | mRNA | 4091667 | 4095600 | 4091667 | ID=Msa0098150-mRNA-1;Parent=Msa0098150;Name=Msa0098150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=152|1|1|1|1|1|6|304|214 |
| chr1_3 | exon | 4091667 | 4092050 | 4091667 | ID=Msa0098150-mRNA-1:exon:1379;Parent=Msa0098150-mRNA-1 |
| chr1_3 | exon | 4092138 | 4092195 | 4092138 | ID=Msa0098150-mRNA-1:exon:1378;Parent=Msa0098150-mRNA-1 |
| chr1_3 | exon | 4093196 | 4093232 | 4093196 | ID=Msa0098150-mRNA-1:exon:1377;Parent=Msa0098150-mRNA-1 |
| chr1_3 | exon | 4094086 | 4094330 | 4094086 | ID=Msa0098150-mRNA-1:exon:1376;Parent=Msa0098150-mRNA-1 |
| chr1_3 | exon | 4094747 | 4094854 | 4094747 | ID=Msa0098150-mRNA-1:exon:1375;Parent=Msa0098150-mRNA-1 |
| chr1_3 | exon | 4095332 | 4095600 | 4095332 | ID=Msa0098150-mRNA-1:exon:1374;Parent=Msa0098150-mRNA-1 |
| chr1_3 | five_prime_UTR | 4095449 | 4095600 | 4095449 | ID=Msa0098150-mRNA-1:five_prime_utr;Parent=Msa0098150-mRNA-1 |
| chr1_3 | CDS | 4095332 | 4095448 | 4095332 | ID=Msa0098150-mRNA-1:cds;Parent=Msa0098150-mRNA-1 |
| chr1_3 | CDS | 4094747 | 4094854 | 4094747 | ID=Msa0098150-mRNA-1:cds;Parent=Msa0098150-mRNA-1 |
| chr1_3 | CDS | 4094086 | 4094330 | 4094086 | ID=Msa0098150-mRNA-1:cds;Parent=Msa0098150-mRNA-1 |
| chr1_3 | CDS | 4093196 | 4093232 | 4093196 | ID=Msa0098150-mRNA-1:cds;Parent=Msa0098150-mRNA-1 |
| chr1_3 | CDS | 4092138 | 4092195 | 4092138 | ID=Msa0098150-mRNA-1:cds;Parent=Msa0098150-mRNA-1 |
| chr1_3 | CDS | 4091971 | 4092050 | 4091971 | ID=Msa0098150-mRNA-1:cds;Parent=Msa0098150-mRNA-1 |
| chr1_3 | three_prime_UTR | 4091667 | 4091970 | 4091667 | ID=Msa0098150-mRNA-1:three_prime_utr;Parent=Msa0098150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
