Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098630 | XP_003589023.3 | 87.115 | 357 | 32 | 5 | 1 | 344 | 1 | 356 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098630 | sp|B5X0N6|KEA6_ARATH | 79.771 | 262 | 40 | 4 | 93 | 344 | 69 | 327 | 2.93e-138 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098630 | A0A396JLF0 | 87.115 | 357 | 32 | 5 | 1 | 344 | 1 | 356 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005070 | Msa0098630 | 0.824888 | 6.324454e-54 | -8.615850e-47 |
| Msa0098630 | Msa0173010 | 0.925735 | 1.226145e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098630 | MtrunA17_Chr1g0151641 | 87.115 | 357 | 32 | 5 | 1 | 344 | 1 | 356 | 0.0 | 588 |
| Msa0098630 | MtrunA17_Chr8g0389231 | 67.834 | 314 | 83 | 5 | 46 | 344 | 5 | 315 | 1.86e-130 | 385 |
| Msa0098630 | MtrunA17_Chr6g0475301 | 62.731 | 271 | 82 | 6 | 90 | 344 | 42 | 309 | 2.06e-106 | 323 |
| Msa0098630 | MtrunA17_Chr8g0349591 | 36.842 | 133 | 82 | 2 | 216 | 347 | 595 | 726 | 5.68e-19 | 88.6 |
| Msa0098630 | MtrunA17_Chr7g0247081 | 36.842 | 133 | 82 | 2 | 216 | 347 | 610 | 741 | 1.87e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098630 | AT5G11800.1 | 79.771 | 262 | 40 | 4 | 93 | 344 | 69 | 327 | 2.98e-139 | 408 |
| Msa0098630 | AT2G19600.1 | 74.632 | 272 | 60 | 4 | 79 | 344 | 51 | 319 | 5.85e-135 | 397 |
| Msa0098630 | AT5G51710.2 | 61.679 | 274 | 87 | 5 | 86 | 344 | 34 | 304 | 1.68e-103 | 315 |
| Msa0098630 | AT5G51710.1 | 61.679 | 274 | 87 | 5 | 86 | 344 | 34 | 304 | 1.73e-103 | 315 |
| Msa0098630 | AT4G00630.1 | 36.090 | 133 | 83 | 2 | 216 | 347 | 592 | 723 | 5.71e-18 | 85.9 |
| Msa0098630 | AT4G00630.2 | 36.090 | 133 | 83 | 2 | 216 | 347 | 592 | 723 | 5.94e-18 | 85.9 |
| Msa0098630 | AT1G01790.1 | 35.075 | 134 | 85 | 2 | 215 | 347 | 611 | 743 | 1.77e-17 | 84.3 |
| Msa0098630 | AT1G01790.2 | 35.075 | 134 | 85 | 2 | 215 | 347 | 611 | 743 | 1.77e-17 | 84.3 |
| Msa0098630 | AT4G04850.2 | 29.936 | 157 | 83 | 4 | 211 | 344 | 121 | 273 | 3.01e-11 | 65.1 |
| Msa0098630 | AT4G04850.1 | 30.573 | 157 | 82 | 4 | 211 | 344 | 121 | 273 | 9.11e-11 | 63.5 |
Find 88 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTAGCTGGCTCCATTAT+TGG | 0.163413 | 1_3:+4647473 | Msa0098630:CDS |
| TAACAATTACCAAATGATTT+TGG | 0.216905 | 1_3:-4645470 | None:intergenic |
| GACAAAGTACCTGTAAAATA+AGG | 0.229903 | 1_3:-4649426 | None:intergenic |
| GTTCGATCTGTTGCTGTTCT+TGG | 0.238691 | 1_3:+4647927 | Msa0098630:CDS |
| AGTGGTGGAGAGGGAGATAT+TGG | 0.246776 | 1_3:-4645612 | None:intergenic |
| TCTTATTATGATTACCTTGT+TGG | 0.306362 | 1_3:-4645712 | None:intergenic |
| AACACTACTAATGCCCTTCA+TGG | 0.322915 | 1_3:+4649385 | Msa0098630:CDS |
| ATTATATGGCAGGTCATTAC+TGG | 0.325742 | 1_3:+4647446 | Msa0098630:intron |
| TTGTTGAAACCTCCCGATTC+AGG | 0.329351 | 1_3:-4645864 | None:intergenic |
| CTTGGTAGTTGCTATTGTTT+CGG | 0.364278 | 1_3:+4647275 | Msa0098630:CDS |
| CCTTTCGATCAATTAACATT+GGG | 0.366471 | 1_3:-4647000 | None:intergenic |
| CGGTGCTGCAGCTAGATTTA+CGG | 0.367469 | 1_3:+4647151 | Msa0098630:CDS |
| TTGGGGTGTCTTCACCTCTA+TGG | 0.368082 | 1_3:-4646982 | None:intergenic |
| AAAGCCTCCGGGTCCAATAA+TGG | 0.374923 | 1_3:-4647486 | None:intergenic |
| TTCCTTGAATCAGGCTGTAC+TGG | 0.377063 | 1_3:+4646800 | Msa0098630:intron |
| CTTCATGGACAAGTCACAAT+TGG | 0.388980 | 1_3:+4649400 | Msa0098630:CDS |
| TAGCTGCAGCACCGGATACT+TGG | 0.392289 | 1_3:-4647142 | None:intergenic |
| CTTTAACTTCATCAATGAAA+TGG | 0.394888 | 1_3:+4647505 | Msa0098630:CDS |
| GAGTAGTGAGCAAGTTGAAA+TGG | 0.406765 | 1_3:-4645385 | None:intergenic |
| TTTAATTACAGTGCCTGAAT+CGG | 0.406779 | 1_3:+4645851 | Msa0098630:intron |
| TAACTTTAAATCCAAGTATC+CGG | 0.413634 | 1_3:+4647131 | Msa0098630:CDS |
| CAACAGTGTTGCAGAACAAC+AGG | 0.443040 | 1_3:+4645884 | Msa0098630:CDS |
| ATTGATGAAGTTAAAGCCTC+CGG | 0.446723 | 1_3:-4647498 | None:intergenic |
| CGATCTGTTGCTGTTCTTGG+TGG | 0.449460 | 1_3:+4647930 | Msa0098630:CDS |
| ACAAAGTACCTGTAAAATAA+GGG | 0.453500 | 1_3:-4649425 | None:intergenic |
| ATGTTAACACCAAAATCATT+TGG | 0.455343 | 1_3:+4645461 | Msa0098630:CDS |
| CAGTGGTGGAGTTGATGAGT+TGG | 0.457520 | 1_3:-4645586 | None:intergenic |
| ACCTTTCGATCAATTAACAT+TGG | 0.467353 | 1_3:-4647001 | None:intergenic |
| TTAATTACAGTGCCTGAATC+GGG | 0.473538 | 1_3:+4645852 | Msa0098630:intron |
| TTATAGATTGATTTCAGACT+TGG | 0.483413 | 1_3:+4647257 | Msa0098630:intron |
| AGGAATGAGGTAGAAGAAGA+AGG | 0.491715 | 1_3:-4645526 | None:intergenic |
| GTGGAAACAGTGGCTCAATT+CGG | 0.495141 | 1_3:+4647740 | Msa0098630:CDS |
| ATTACTGGATATCTTCTAGC+TGG | 0.502180 | 1_3:+4647461 | Msa0098630:CDS |
| CGCCGGCGAAGGTTAGCAGT+TGG | 0.502664 | 1_3:-4645433 | None:intergenic |
| GTTGAAATGGTGAGGGGTCA+AGG | 0.504293 | 1_3:-4645372 | None:intergenic |
| TTCATGGACAAGTCACAATT+GGG | 0.505486 | 1_3:+4649401 | Msa0098630:CDS |
| CGTAAATCTAGCTGCAGCAC+CGG | 0.508983 | 1_3:-4647150 | None:intergenic |
| TGGTGTTAACATTGCCGCGC+CGG | 0.513443 | 1_3:-4645450 | None:intergenic |
| GAGGGAGATATTGGAGTCAG+TGG | 0.515404 | 1_3:-4645603 | None:intergenic |
| AAGAGCACGATCAATGATAT+CGG | 0.515596 | 1_3:-4645654 | None:intergenic |
| CTGCTGTTGAAGACATAGAA+AGG | 0.516801 | 1_3:-4649225 | None:intergenic |
| CAGTTACAGTTCACCGGCGA+GGG | 0.517471 | 1_3:-4645410 | None:intergenic |
| GGAGATATTGGAGTCAGTGG+TGG | 0.522237 | 1_3:-4645600 | None:intergenic |
| CTTCATCAATGAAATGGTGC+AGG | 0.531070 | 1_3:+4647511 | Msa0098630:CDS |
| TTACAACCACTTGGTGTTGG+TGG | 0.533597 | 1_3:+4645490 | Msa0098630:CDS |
| CCCAATGTTAATTGATCGAA+AGG | 0.537649 | 1_3:+4647000 | Msa0098630:CDS |
| CTCTCCACCACTCCTCGTCA+AGG | 0.538720 | 1_3:+4645623 | Msa0098630:CDS |
| TTTCTATTTATGTGCATGTG+TGG | 0.539434 | 1_3:+4647966 | Msa0098630:CDS |
| TTCTATGTCTTCAACAGCAG+TGG | 0.546303 | 1_3:+4649228 | Msa0098630:CDS |
| GTGAGCAAGTTGAAATGGTG+AGG | 0.550073 | 1_3:-4645380 | None:intergenic |
| AAATAAGCCAACCTTTGTCA+TGG | 0.550185 | 1_3:-4647801 | None:intergenic |
| TTGACGAGGAGTGGTGGAGA+GGG | 0.550939 | 1_3:-4645621 | None:intergenic |
| TGCCAACTGCTAACCTTCGC+CGG | 0.553207 | 1_3:+4645431 | Msa0098630:CDS |
| GTTGATGAGTTGGATTTGAT+CGG | 0.553775 | 1_3:-4645576 | None:intergenic |
| CAATTGTGACTTGTCCATGA+AGG | 0.554654 | 1_3:-4649399 | None:intergenic |
| TAACATTGCCGCGCCGGCGA+AGG | 0.556916 | 1_3:-4645444 | None:intergenic |
| TTGATGAAGTTAAAGCCTCC+GGG | 0.562820 | 1_3:-4647497 | None:intergenic |
| AATTGTGACTTGTCCATGAA+GGG | 0.569323 | 1_3:-4649398 | None:intergenic |
| AGTTGGCAGTTACAGTTCAC+CGG | 0.573943 | 1_3:-4645416 | None:intergenic |
| GAAGGAACCTTGACGAGGAG+TGG | 0.573992 | 1_3:-4645630 | None:intergenic |
| AGGTCATTTCAACTCCATAG+AGG | 0.574234 | 1_3:+4646968 | Msa0098630:intron |
| TGGTAATTGTTACAACCACT+TGG | 0.578737 | 1_3:+4645481 | Msa0098630:CDS |
| CGGATAGCGAGTGAGGAATG+AGG | 0.579924 | 1_3:-4645539 | None:intergenic |
| GATCGGAGTGAGCATGTGAT+CGG | 0.583743 | 1_3:-4645559 | None:intergenic |
| TTGTTACAACCACTTGGTGT+TGG | 0.587535 | 1_3:+4645487 | Msa0098630:CDS |
| GGAACCTTGACGAGGAGTGG+TGG | 0.589759 | 1_3:-4645627 | None:intergenic |
| CCTTTGTCATGGAAAACTCC+AGG | 0.589774 | 1_3:-4647790 | None:intergenic |
| CTTTCGATCAATTAACATTG+GGG | 0.595338 | 1_3:-4646999 | None:intergenic |
| GCTATTGTTTCGGCAACTTG+TGG | 0.596030 | 1_3:+4647285 | Msa0098630:CDS |
| GCTCACTACTCTCCCCTCGC+CGG | 0.597630 | 1_3:+4645397 | Msa0098630:CDS |
| TGTGGTGGTAAAGCTTCAGA+AGG | 0.597905 | 1_3:+4649184 | Msa0098630:CDS |
| CTTGACGAGGAGTGGTGGAG+AGG | 0.604358 | 1_3:-4645622 | None:intergenic |
| TGAGCAAGTTGAAATGGTGA+GGG | 0.608389 | 1_3:-4645379 | None:intergenic |
| ATTGTTTCGGCAACTTGTGG+TGG | 0.611297 | 1_3:+4647288 | Msa0098630:CDS |
| GCTGGCTCCATTATTGGACC+CGG | 0.611628 | 1_3:+4647479 | Msa0098630:CDS |
| ATGTGATCGGATAGCGAGTG+AGG | 0.614623 | 1_3:-4645546 | None:intergenic |
| GGCTCCATTATTGGACCCGG+AGG | 0.616606 | 1_3:+4647482 | Msa0098630:CDS |
| GCAGTTACAGTTCACCGGCG+AGG | 0.617908 | 1_3:-4645411 | None:intergenic |
| ATTACAGTGCCTGAATCGGG+AGG | 0.635955 | 1_3:+4645855 | Msa0098630:intron |
| ACGATCAATGATATCGGCGA+AGG | 0.640359 | 1_3:-4645648 | None:intergenic |
| AGTTACAGTTCACCGGCGAG+GGG | 0.643154 | 1_3:-4645409 | None:intergenic |
| CTGTCACCACCAACACCAAG+TGG | 0.643448 | 1_3:-4645496 | None:intergenic |
| ACTGCTAACCTTCGCCGGCG+CGG | 0.649563 | 1_3:+4645436 | Msa0098630:CDS |
| GTGGTGGTAAAGCTTCAGAA+GGG | 0.658870 | 1_3:+4649185 | Msa0098630:CDS |
| ATGAACTTAGGTGGAAACAG+TGG | 0.697930 | 1_3:+4647730 | Msa0098630:intron |
| GAGCAAGTTGAAATGGTGAG+GGG | 0.699052 | 1_3:-4645378 | None:intergenic |
| AACGATGATCAAAACCAACA+AGG | 0.699159 | 1_3:+4645698 | Msa0098630:CDS |
| TCGGCGAAGGAACCTTGACG+AGG | 0.713013 | 1_3:-4645635 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATTATTTGTATTAAAT+AGG | + | chr1_3:4646010-4646029 | Msa0098630:intron | 10.0% |
| !! | TTAAGTCATAAAATTAAATA+AGG | - | chr1_3:4648058-4648077 | None:intergenic | 10.0% |
| !! | ATAAAAATCTATTAATGAGT+TGG | + | chr1_3:4646429-4646448 | Msa0098630:intron | 15.0% |
| !!! | ATATTTATTCTTTTTGCATT+GGG | + | chr1_3:4647767-4647786 | Msa0098630:CDS | 15.0% |
| !!! | ATTTTATGACTTAAACTTAA+TGG | + | chr1_3:4648064-4648083 | Msa0098630:intron | 15.0% |
| !!! | TTTTATGACTTAAACTTAAT+GGG | + | chr1_3:4648065-4648084 | Msa0098630:intron | 15.0% |
| !! | AGTATTTCTTTGTATATTTA+AGG | - | chr1_3:4648376-4648395 | None:intergenic | 15.0% |
| !! | AAACATAGTAATTTAATCAA+AGG | + | chr1_3:4648963-4648982 | Msa0098630:intron | 15.0% |
| !! | ACACTCAAATTATATTATAT+GGG | - | chr1_3:4649034-4649053 | None:intergenic | 15.0% |
| !! | AACACTCAAATTATATTATA+TGG | - | chr1_3:4649035-4649054 | None:intergenic | 15.0% |
| !! | TATAATATAATTTGAGTGTT+TGG | + | chr1_3:4649035-4649054 | Msa0098630:intron | 15.0% |
| !!! | TAACAATTACCAAATGATTT+TGG | - | chr1_3:4645473-4645492 | None:intergenic | 20.0% |
| !! | ATTTCATGTTTCAACTTATA+AGG | - | chr1_3:4645996-4646015 | None:intergenic | 20.0% |
| !!! | TAATGAGTTGGATAAAAATA+AGG | + | chr1_3:4646441-4646460 | Msa0098630:intron | 20.0% |
| !!! | ATGTATTTTTCTAAACTTAC+AGG | + | chr1_3:4646948-4646967 | Msa0098630:intron | 20.0% |
| !!! | TTACATTTTCAACATAAGAT+GGG | + | chr1_3:4647191-4647210 | Msa0098630:intron | 20.0% |
| !!! | AATATCCTGAAAGTATTATA+TGG | + | chr1_3:4647432-4647451 | Msa0098630:intron | 20.0% |
| !!! | GATATTTATTCTTTTTGCAT+TGG | + | chr1_3:4647766-4647785 | Msa0098630:CDS | 20.0% |
| !! | ACATAACAAAAAAGAGAAAA+GGG | - | chr1_3:4647838-4647857 | None:intergenic | 20.0% |
| !! | AACATAACAAAAAAGAGAAA+AGG | - | chr1_3:4647839-4647858 | None:intergenic | 20.0% |
| !! | TTTATGACTTAAACTTAATG+GGG | + | chr1_3:4648066-4648085 | Msa0098630:intron | 20.0% |
| !!! | TTAGTAGATTTTGAAAAAAC+TGG | + | chr1_3:4648477-4648496 | Msa0098630:intron | 20.0% |
| !! | AAACTGTAAAGAAACAATAA+TGG | + | chr1_3:4648660-4648679 | Msa0098630:intron | 20.0% |
| !!! | TTCAGTTTTAATGGATATTA+TGG | + | chr1_3:4649063-4649082 | Msa0098630:intron | 20.0% |
| ! | ATGTTAACACCAAAATCATT+TGG | + | chr1_3:4645461-4645480 | Msa0098630:CDS | 25.0% |
| ! | TCTTATTATGATTACCTTGT+TGG | - | chr1_3:4645715-4645734 | None:intergenic | 25.0% |
| ! | AGGTAATCATAATAAGATCT+TGG | + | chr1_3:4645718-4645737 | Msa0098630:intron | 25.0% |
| ! | ATTGCATATTACTTCCATTT+AGG | + | chr1_3:4645932-4645951 | Msa0098630:intron | 25.0% |
| ! | GTAACAAAATCTTTCCTAAA+TGG | - | chr1_3:4645949-4645968 | None:intergenic | 25.0% |
| ! | GATTGTATTGTAGACTTTAA+TGG | + | chr1_3:4646075-4646094 | Msa0098630:intron | 25.0% |
| ! | AAATCTAGAGATTAACAAGT+TGG | + | chr1_3:4646390-4646409 | Msa0098630:intron | 25.0% |
| ! | TAAAGTGGAAACATCAAATA+AGG | - | chr1_3:4646521-4646540 | None:intergenic | 25.0% |
| !! | CACTAACTAAATCTTTAAAG+TGG | - | chr1_3:4646536-4646555 | None:intergenic | 25.0% |
| !! | CACTTTAAAGATTTAGTTAG+TGG | + | chr1_3:4646534-4646553 | Msa0098630:intron | 25.0% |
| !! | TTTTGCAAAGAATCTGATTT+CGG | - | chr1_3:4646565-4646584 | None:intergenic | 25.0% |
| !!! | TCTTTAGTGTCATTTTTGTT+CGG | - | chr1_3:4646846-4646865 | None:intergenic | 25.0% |
| ! | TAACTTTAAATCCAAGTATC+CGG | + | chr1_3:4647131-4647150 | Msa0098630:CDS | 25.0% |
| !! | GTTACATTTTCAACATAAGA+TGG | + | chr1_3:4647190-4647209 | Msa0098630:intron | 25.0% |
| !! | TACATTTTCAACATAAGATG+GGG | + | chr1_3:4647192-4647211 | Msa0098630:intron | 25.0% |
| !! | TTATAGATTGATTTCAGACT+TGG | + | chr1_3:4647257-4647276 | Msa0098630:intron | 25.0% |
| ! | TAGAACAAGAATATTCATAC+CGG | - | chr1_3:4647339-4647358 | None:intergenic | 25.0% |
| !! | CTTTAACTTCATCAATGAAA+TGG | + | chr1_3:4647505-4647524 | Msa0098630:CDS | 25.0% |
| !! | TTAGGTTTCTTTTCATAGAT+AGG | - | chr1_3:4647660-4647679 | None:intergenic | 25.0% |
| ! | CATAACAAAAAAGAGAAAAG+GGG | - | chr1_3:4647837-4647856 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTATGTTTATGC+TGG | + | chr1_3:4647844-4647863 | Msa0098630:intron | 25.0% |
| ! | AAGCATGTATATAGAAAGTA+GGG | - | chr1_3:4647894-4647913 | None:intergenic | 25.0% |
| ! | AGCAATAATTGAGTTTCTAA+GGG | - | chr1_3:4648191-4648210 | None:intergenic | 25.0% |
| ! | AAGCAATAATTGAGTTTCTA+AGG | - | chr1_3:4648192-4648211 | None:intergenic | 25.0% |
| ! | TAGAAACTCAATTATTGCTT+TGG | + | chr1_3:4648192-4648211 | Msa0098630:intron | 25.0% |
| ! | ATCTTTCGACATAAATCATT+TGG | - | chr1_3:4648220-4648239 | None:intergenic | 25.0% |
| ! | TCAGATCATGCAATAAATAA+AGG | - | chr1_3:4648341-4648360 | None:intergenic | 25.0% |
| ! | TGTATATTTAAGGATGACAA+GGG | - | chr1_3:4648366-4648385 | None:intergenic | 25.0% |
| ! | TTGTATATTTAAGGATGACA+AGG | - | chr1_3:4648367-4648386 | None:intergenic | 25.0% |
| !!! | ATACTGATTTTAATACCCAA+AGG | + | chr1_3:4648391-4648410 | Msa0098630:intron | 25.0% |
| ! | AAAGATGAAACTTAACCTTT+GGG | - | chr1_3:4648409-4648428 | None:intergenic | 25.0% |
| ! | AAAAGATGAAACTTAACCTT+TGG | - | chr1_3:4648410-4648429 | None:intergenic | 25.0% |
| ! | TTAACGAATAGAACAGAAAA+CGG | + | chr1_3:4648632-4648651 | Msa0098630:intron | 25.0% |
| !! | TGTAAAGAAACAATAATGGA+AGG | + | chr1_3:4648664-4648683 | Msa0098630:intron | 25.0% |
| ! | CTTCAATTTGTATTATACCA+GGG | - | chr1_3:4648862-4648881 | None:intergenic | 25.0% |
| ! | AGTAATTTAATCAAAGGAGA+AGG | + | chr1_3:4648969-4648988 | Msa0098630:intron | 25.0% |
| ! | ATCAAGAAAAAGAAACAACA+TGG | - | chr1_3:4649002-4649021 | None:intergenic | 25.0% |
| !!! | TTGGTGTATTTCAGTTTTAA+TGG | + | chr1_3:4649054-4649073 | Msa0098630:intron | 25.0% |
| ! | AGAAACAGAAAAGTTATTAC+CGG | - | chr1_3:4649323-4649342 | None:intergenic | 25.0% |
| !! | ACAAAGTACCTGTAAAATAA+GGG | - | chr1_3:4649428-4649447 | None:intergenic | 25.0% |
| !! | GTTTTGATCATCGTTTTCTT+CGG | - | chr1_3:4645693-4645712 | None:intergenic | 30.0% |
| TTTAATTACAGTGCCTGAAT+CGG | + | chr1_3:4645851-4645870 | Msa0098630:intron | 30.0% | |
| ATTAGAAGCTAATCCAGAAT+AGG | + | chr1_3:4646041-4646060 | Msa0098630:intron | 30.0% | |
| AGACTTTAATGGCATAATTG+AGG | + | chr1_3:4646086-4646105 | Msa0098630:intron | 30.0% | |
| AATTCCTCTATAGTCTTTCT+AGG | - | chr1_3:4646362-4646381 | None:intergenic | 30.0% | |
| ATATACAACTACAACCAAGT+CGG | - | chr1_3:4646483-4646502 | None:intergenic | 30.0% | |
| GATATGTCGAATGTGTAAAT+GGG | + | chr1_3:4646667-4646686 | Msa0098630:intron | 30.0% | |
| ATATGTCGAATGTGTAAATG+GGG | + | chr1_3:4646668-4646687 | Msa0098630:intron | 30.0% | |
| AATGCAATATACAAGTACCA+TGG | - | chr1_3:4646737-4646756 | None:intergenic | 30.0% | |
| TGCATTTCATAACTTCTCTA+AGG | + | chr1_3:4646751-4646770 | Msa0098630:intron | 30.0% | |
| GCATTTCATAACTTCTCTAA+GGG | + | chr1_3:4646752-4646771 | Msa0098630:intron | 30.0% | |
| CTTTCGATCAATTAACATTG+GGG | - | chr1_3:4647002-4647021 | None:intergenic | 30.0% | |
| CCTTTCGATCAATTAACATT+GGG | - | chr1_3:4647003-4647022 | None:intergenic | 30.0% | |
| ACCTTTCGATCAATTAACAT+TGG | - | chr1_3:4647004-4647023 | None:intergenic | 30.0% | |
| ! | AAAATTGCTGCTCTTCTTTT+TGG | + | chr1_3:4647587-4647606 | Msa0098630:intron | 30.0% |
| AAGAAATGCTGTTAAGTGTT+AGG | - | chr1_3:4647678-4647697 | None:intergenic | 30.0% | |
| TATAGAAAGTAGGGTAATCA+AGG | - | chr1_3:4647885-4647904 | None:intergenic | 30.0% | |
| CAAGCATGTATATAGAAAGT+AGG | - | chr1_3:4647895-4647914 | None:intergenic | 30.0% | |
| TTTCTATTTATGTGCATGTG+TGG | + | chr1_3:4647966-4647985 | Msa0098630:CDS | 30.0% | |
| TGATCCAAAGATTTCTTGAT+TGG | - | chr1_3:4648111-4648130 | None:intergenic | 30.0% | |
| TTCAGTTGCAAATGTATGTT+TGG | + | chr1_3:4648149-4648168 | Msa0098630:intron | 30.0% | |
| GCAATAATTGAGTTTCTAAG+GGG | - | chr1_3:4648190-4648209 | None:intergenic | 30.0% | |
| ! | TACATGCATGTTTGGTTTAT+AGG | - | chr1_3:4648260-4648279 | None:intergenic | 30.0% |
| CTTTCAAATTTGTCATGCTT+GGG | - | chr1_3:4648518-4648537 | None:intergenic | 30.0% | |
| TCTTTCAAATTTGTCATGCT+TGG | - | chr1_3:4648519-4648538 | None:intergenic | 30.0% | |
| CCAGAAAGAAAATGAGAAAA+AGG | - | chr1_3:4648597-4648616 | None:intergenic | 30.0% | |
| ! | CCTTTTTCTCATTTTCTTTC+TGG | + | chr1_3:4648594-4648613 | Msa0098630:intron | 30.0% |
| ! | GTTTTCTGTTCTATTCGTTA+AGG | - | chr1_3:4648633-4648652 | None:intergenic | 30.0% |
| ACTGAAAATAGAACTAGAAG+AGG | + | chr1_3:4648706-4648725 | Msa0098630:intron | 30.0% | |
| AACTAGATAGAAATCTGGTA+GGG | - | chr1_3:4648815-4648834 | None:intergenic | 30.0% | |
| AAGAGAACTAGATAGAAATC+TGG | - | chr1_3:4648820-4648839 | None:intergenic | 30.0% | |
| CCTTCAATTTGTATTATACC+AGG | - | chr1_3:4648863-4648882 | None:intergenic | 30.0% | |
| CCTGGTATAATACAAATTGA+AGG | + | chr1_3:4648860-4648879 | Msa0098630:intron | 30.0% | |
| AAATTGAAGGTGACATAGAT+GGG | + | chr1_3:4648873-4648892 | Msa0098630:intron | 30.0% | |
| TTAAATATCTTGTGCATCAG+TGG | + | chr1_3:4649103-4649122 | Msa0098630:intron | 30.0% | |
| ! | TATGCAATTTTGCAGTTATG+TGG | + | chr1_3:4649166-4649185 | Msa0098630:intron | 30.0% |
| !!! | TTCTTCACTTTTTCTTGTTC+AGG | + | chr1_3:4649339-4649358 | Msa0098630:intron | 30.0% |
| ! | GACAAAGTACCTGTAAAATA+AGG | - | chr1_3:4649429-4649448 | None:intergenic | 30.0% |
| TGGTAATTGTTACAACCACT+TGG | + | chr1_3:4645481-4645500 | Msa0098630:CDS | 35.0% | |
| ! | GTTGATGAGTTGGATTTGAT+CGG | - | chr1_3:4645579-4645598 | None:intergenic | 35.0% |
| ! | AAGAGCACGATCAATGATAT+CGG | - | chr1_3:4645657-4645676 | None:intergenic | 35.0% |
| AACGATGATCAAAACCAACA+AGG | + | chr1_3:4645698-4645717 | Msa0098630:CDS | 35.0% | |
| TTAATTACAGTGCCTGAATC+GGG | + | chr1_3:4645852-4645871 | Msa0098630:intron | 35.0% | |
| TCTCTGACTAATACCTATTC+TGG | - | chr1_3:4646057-4646076 | None:intergenic | 35.0% | |
| AAAGAACCAACACGAAAAGA+TGG | + | chr1_3:4646187-4646206 | Msa0098630:intron | 35.0% | |
| AGCCACTATAGTAGAAAAGA+TGG | + | chr1_3:4646295-4646314 | Msa0098630:intron | 35.0% | |
| ! | CACCATCTTTTCTACTATAG+TGG | - | chr1_3:4646300-4646319 | None:intergenic | 35.0% |
| CACTATAGTAGAAAAGATGG+TGG | + | chr1_3:4646298-4646317 | Msa0098630:intron | 35.0% | |
| !! | AGAAAAGATGGTGGAAACTA+AGG | + | chr1_3:4646307-4646326 | Msa0098630:intron | 35.0% |
| AAGACCTAGAAAGACTATAG+AGG | + | chr1_3:4646355-4646374 | Msa0098630:intron | 35.0% | |
| GGAAACATCAAATAAGGTGA+AGG | - | chr1_3:4646515-4646534 | None:intergenic | 35.0% | |
| ATGTGTTGAATGTGTGAATG+CGG | - | chr1_3:4646593-4646612 | None:intergenic | 35.0% | |
| TTACACATTCGACATATCCA+CGG | - | chr1_3:4646665-4646684 | None:intergenic | 35.0% | |
| GGATATGTCGAATGTGTAAA+TGG | + | chr1_3:4646666-4646685 | Msa0098630:intron | 35.0% | |
| CCCAATGTTAATTGATCGAA+AGG | + | chr1_3:4647000-4647019 | Msa0098630:CDS | 35.0% | |
| GTGTAAATTGTGCATCTTTC+AGG | + | chr1_3:4647089-4647108 | Msa0098630:intron | 35.0% | |
| ! | CTTGGTAGTTGCTATTGTTT+CGG | + | chr1_3:4647275-4647294 | Msa0098630:CDS | 35.0% |
| TTCTTGACAAACGCAATCTT+AGG | + | chr1_3:4647366-4647385 | Msa0098630:intron | 35.0% | |
| !! | TCCTGAAAGTATTATATGGC+AGG | + | chr1_3:4647436-4647455 | Msa0098630:intron | 35.0% |
| ACCTGCCATATAATACTTTC+AGG | - | chr1_3:4647440-4647459 | None:intergenic | 35.0% | |
| ATTATATGGCAGGTCATTAC+TGG | + | chr1_3:4647446-4647465 | Msa0098630:intron | 35.0% | |
| ATTACTGGATATCTTCTAGC+TGG | + | chr1_3:4647461-4647480 | Msa0098630:CDS | 35.0% | |
| ATTGATGAAGTTAAAGCCTC+CGG | - | chr1_3:4647501-4647520 | None:intergenic | 35.0% | |
| !!! | TTTTTAGAGTTCAGCTCAGT+TGG | + | chr1_3:4647614-4647633 | Msa0098630:intron | 35.0% |
| AAATAAGCCAACCTTTGTCA+TGG | - | chr1_3:4647804-4647823 | None:intergenic | 35.0% | |
| !! | CATGTGTGGTTTTACTGTAT+CGG | + | chr1_3:4647980-4647999 | Msa0098630:CDS | 35.0% |
| CAAGCCAATCAAGAAATCTT+TGG | + | chr1_3:4648104-4648123 | Msa0098630:intron | 35.0% | |
| TGGATCATGTAGTGTATGTT+TGG | + | chr1_3:4648124-4648143 | Msa0098630:intron | 35.0% | |
| AAGACAACTACATGCATGTT+TGG | - | chr1_3:4648268-4648287 | None:intergenic | 35.0% | |
| AATTCTGTGATAGCAAGGTT+TGG | - | chr1_3:4648779-4648798 | None:intergenic | 35.0% | |
| GAACTAGATAGAAATCTGGT+AGG | - | chr1_3:4648816-4648835 | None:intergenic | 35.0% | |
| AGGGTGTAGAATATATCTAC+AGG | - | chr1_3:4648843-4648862 | None:intergenic | 35.0% | |
| TGTAGATATATTCTACACCC+TGG | + | chr1_3:4648842-4648861 | Msa0098630:intron | 35.0% | |
| CAAATTGAAGGTGACATAGA+TGG | + | chr1_3:4648872-4648891 | Msa0098630:intron | 35.0% | |
| AATTGAAGGTGACATAGATG+GGG | + | chr1_3:4648874-4648893 | Msa0098630:intron | 35.0% | |
| GTAGCATTCGAAATGTCATA+TGG | - | chr1_3:4649135-4649154 | None:intergenic | 35.0% | |
| ! | CAGTGTGTGCACTTTAAAAA+TGG | - | chr1_3:4649283-4649302 | None:intergenic | 35.0% |
| ! | TCAGGTCTTGAAGTTTTTGA+TGG | + | chr1_3:4649357-4649376 | Msa0098630:intron | 35.0% |
| ! | AATTGTGACTTGTCCATGAA+GGG | - | chr1_3:4649401-4649420 | None:intergenic | 35.0% |
| TTCATGGACAAGTCACAATT+GGG | + | chr1_3:4649401-4649420 | Msa0098630:CDS | 35.0% | |
| !!! | AATTGGGACCCTTATTTTAC+AGG | + | chr1_3:4649417-4649436 | Msa0098630:CDS | 35.0% |
| ! | TGAGCAAGTTGAAATGGTGA+GGG | - | chr1_3:4645382-4645401 | None:intergenic | 40.0% |
| ! | GAGTAGTGAGCAAGTTGAAA+TGG | - | chr1_3:4645388-4645407 | None:intergenic | 40.0% |
| !! | TTGTTACAACCACTTGGTGT+TGG | + | chr1_3:4645487-4645506 | Msa0098630:CDS | 40.0% |
| AGGAATGAGGTAGAAGAAGA+AGG | - | chr1_3:4645529-4645548 | None:intergenic | 40.0% | |
| !! | AAAGATGGTGGATGTTGTGT+TGG | + | chr1_3:4646202-4646221 | Msa0098630:intron | 40.0% |
| ! | TTTTATCCATGTAGCCGACT+TGG | + | chr1_3:4646466-4646485 | Msa0098630:intron | 40.0% |
| TCACACATTCAACACATCTG+CGG | + | chr1_3:4646596-4646615 | Msa0098630:intron | 40.0% | |
| ! | TGGGGCAAATTTTAGACTAC+AGG | + | chr1_3:4646686-4646705 | Msa0098630:intron | 40.0% |
| ! | GGGGCAAATTTTAGACTACA+GGG | + | chr1_3:4646687-4646706 | Msa0098630:intron | 40.0% |
| TAGTCCTCTTTCCTTGAATC+AGG | + | chr1_3:4646791-4646810 | Msa0098630:intron | 40.0% | |
| !!! | ATTTTTGTTCGGTGTGACTC+TGG | - | chr1_3:4646835-4646854 | None:intergenic | 40.0% |
| AGGTCATTTCAACTCCATAG+AGG | + | chr1_3:4646968-4646987 | Msa0098630:intron | 40.0% | |
| TTGATGAAGTTAAAGCCTCC+GGG | - | chr1_3:4647500-4647519 | None:intergenic | 40.0% | |
| CTTCATCAATGAAATGGTGC+AGG | + | chr1_3:4647511-4647530 | Msa0098630:CDS | 40.0% | |
| AATGAAATGGTGCAGGTATC+TGG | + | chr1_3:4647518-4647537 | Msa0098630:intron | 40.0% | |
| ATGCAAGCCTGAATGAACTT+AGG | + | chr1_3:4647718-4647737 | Msa0098630:intron | 40.0% | |
| GTTTCCACCTAAGTTCATTC+AGG | - | chr1_3:4647728-4647747 | None:intergenic | 40.0% | |
| ATGAACTTAGGTGGAAACAG+TGG | + | chr1_3:4647730-4647749 | Msa0098630:intron | 40.0% | |
| ! | TATTCTTTTTGCATTGGGCC+TGG | + | chr1_3:4647772-4647791 | Msa0098630:CDS | 40.0% |
| ! | GAGTTTTCCATGACAAAGGT+TGG | + | chr1_3:4647794-4647813 | Msa0098630:intron | 40.0% |
| ! | TTCTAAGGGGCATACATACT+TGG | - | chr1_3:4648177-4648196 | None:intergenic | 40.0% |
| CAAGTCAGACTAATCTCACA+TGG | - | chr1_3:4648311-4648330 | None:intergenic | 40.0% | |
| !! | CATGTGAGATTAGTCTGACT+TGG | + | chr1_3:4648309-4648328 | Msa0098630:intron | 40.0% |
| AGTGGAATTCTGTGATAGCA+AGG | - | chr1_3:4648784-4648803 | None:intergenic | 40.0% | |
| AGATAGAAATCTGGTAGGGA+TGG | - | chr1_3:4648811-4648830 | None:intergenic | 40.0% | |
| ATTGAAGGTGACATAGATGG+GGG | + | chr1_3:4648875-4648894 | Msa0098630:intron | 40.0% | |
| ! | GCAATTTTGCAGTTATGTGG+TGG | + | chr1_3:4649169-4649188 | Msa0098630:intron | 40.0% |
| ! | GCTTCAGAAGGGATTTTTGT+TGG | + | chr1_3:4649196-4649215 | Msa0098630:CDS | 40.0% |
| CTGCTGTTGAAGACATAGAA+AGG | - | chr1_3:4649228-4649247 | None:intergenic | 40.0% | |
| TTCTATGTCTTCAACAGCAG+TGG | + | chr1_3:4649228-4649247 | Msa0098630:CDS | 40.0% | |
| TGTCTAATGTACTTCCTTGC+CGG | + | chr1_3:4649301-4649320 | Msa0098630:intron | 40.0% | |
| CAGAAAAGTTATTACCGGCA+AGG | - | chr1_3:4649318-4649337 | None:intergenic | 40.0% | |
| AACACTACTAATGCCCTTCA+TGG | + | chr1_3:4649385-4649404 | Msa0098630:CDS | 40.0% | |
| ! | CAATTGTGACTTGTCCATGA+AGG | - | chr1_3:4649402-4649421 | None:intergenic | 40.0% |
| CTTCATGGACAAGTCACAAT+TGG | + | chr1_3:4649400-4649419 | Msa0098630:CDS | 40.0% | |
| ! | GAGCAAGTTGAAATGGTGAG+GGG | - | chr1_3:4645381-4645400 | None:intergenic | 45.0% |
| ! | GTGAGCAAGTTGAAATGGTG+AGG | - | chr1_3:4645383-4645402 | None:intergenic | 45.0% |
| AGTTGGCAGTTACAGTTCAC+CGG | - | chr1_3:4645419-4645438 | None:intergenic | 45.0% | |
| !! | TTACAACCACTTGGTGTTGG+TGG | + | chr1_3:4645490-4645509 | Msa0098630:CDS | 45.0% |
| ACGATCAATGATATCGGCGA+AGG | - | chr1_3:4645651-4645670 | None:intergenic | 45.0% | |
| TTGTTGAAACCTCCCGATTC+AGG | - | chr1_3:4645867-4645886 | None:intergenic | 45.0% | |
| CAACAGTGTTGCAGAACAAC+AGG | + | chr1_3:4645884-4645903 | Msa0098630:CDS | 45.0% | |
| TTAGCCTGTCAGACTGACAA+TGG | + | chr1_3:4646139-4646158 | Msa0098630:intron | 45.0% | |
| TACACCATTGTCAGTCTGAC+AGG | - | chr1_3:4646146-4646165 | None:intergenic | 45.0% | |
| ! | GGTGTACAAGACAGAGTGTT+AGG | + | chr1_3:4646160-4646179 | Msa0098630:intron | 45.0% |
| GAACCAACACGAAAAGATGG+TGG | + | chr1_3:4646190-4646209 | Msa0098630:intron | 45.0% | |
| ! | CATCCACCATCTTTTCGTGT+TGG | - | chr1_3:4646196-4646215 | None:intergenic | 45.0% |
| TGGATGTTGTGTTGGATGTG+TGG | + | chr1_3:4646210-4646229 | Msa0098630:intron | 45.0% | |
| ATTAGAGAGAGACAGAGAGC+TGG | + | chr1_3:4646267-4646286 | Msa0098630:intron | 45.0% | |
| TTAGAGAGAGACAGAGAGCT+GGG | + | chr1_3:4646268-4646287 | Msa0098630:intron | 45.0% | |
| !! | AGATGGTGGAAACTAAGGTC+AGG | + | chr1_3:4646312-4646331 | Msa0098630:intron | 45.0% |
| CGGTCTCCAAGCTTGAAATA+TGG | + | chr1_3:4646616-4646635 | Msa0098630:intron | 45.0% | |
| GACGGTCCATATTTCAAGCT+TGG | - | chr1_3:4646625-4646644 | None:intergenic | 45.0% | |
| ! | GTTGCTGGATTTAGTTCGGA+CGG | - | chr1_3:4646643-4646662 | None:intergenic | 45.0% |
| CACGGTTGCTGGATTTAGTT+CGG | - | chr1_3:4646647-4646666 | None:intergenic | 45.0% | |
| ! | TTTTAGACTACAGGGAACCC+TGG | + | chr1_3:4646695-4646714 | Msa0098630:intron | 45.0% |
| GATGCATATTCACCGAACCA+GGG | - | chr1_3:4646715-4646734 | None:intergenic | 45.0% | |
| ! | GTTCGGTGAATATGCATCCA+TGG | + | chr1_3:4646717-4646736 | Msa0098630:intron | 45.0% |
| ACAGCCTGATTCAAGGAAAG+AGG | - | chr1_3:4646798-4646817 | None:intergenic | 45.0% | |
| TTCCTTGAATCAGGCTGTAC+TGG | + | chr1_3:4646800-4646819 | Msa0098630:intron | 45.0% | |
| GCTATTGTTTCGGCAACTTG+TGG | + | chr1_3:4647285-4647304 | Msa0098630:CDS | 45.0% | |
| ATTGTTTCGGCAACTTGTGG+TGG | + | chr1_3:4647288-4647307 | Msa0098630:CDS | 45.0% | |
| !! | GTTTGCTTTTGCTGGACAAC+CGG | + | chr1_3:4647317-4647336 | Msa0098630:CDS | 45.0% |
| ! | CTTCTAGCTGGCTCCATTAT+TGG | + | chr1_3:4647473-4647492 | Msa0098630:CDS | 45.0% |
| CAAGCCTGAATGAACTTAGG+TGG | + | chr1_3:4647721-4647740 | Msa0098630:intron | 45.0% | |
| GTGGAAACAGTGGCTCAATT+CGG | + | chr1_3:4647740-4647759 | Msa0098630:CDS | 45.0% | |
| CCTTTGTCATGGAAAACTCC+AGG | - | chr1_3:4647793-4647812 | None:intergenic | 45.0% | |
| ! | CCTGGAGTTTTCCATGACAA+AGG | + | chr1_3:4647790-4647809 | Msa0098630:CDS | 45.0% |
| ! | GTTCGATCTGTTGCTGTTCT+TGG | + | chr1_3:4647927-4647946 | Msa0098630:CDS | 45.0% |
| !! | GAGAGTGCCTGATTGAATGA+AGG | + | chr1_3:4648442-4648461 | Msa0098630:intron | 45.0% |
| GCACAGACCTTCATTCAATC+AGG | - | chr1_3:4648452-4648471 | None:intergenic | 45.0% | |
| TCATGCTTGGGACAATCAAG+CGG | - | chr1_3:4648506-4648525 | None:intergenic | 45.0% | |
| AGTTCAGCTCATGGAGAAGT+GGG | - | chr1_3:4648741-4648760 | None:intergenic | 45.0% | |
| TAGTTCAGCTCATGGAGAAG+TGG | - | chr1_3:4648742-4648761 | None:intergenic | 45.0% | |
| CTGTGTAGTAGTTCAGCTCA+TGG | - | chr1_3:4648750-4648769 | None:intergenic | 45.0% | |
| TTGAAGGTGACATAGATGGG+GGG | + | chr1_3:4648876-4648895 | Msa0098630:intron | 45.0% | |
| TGTGGTGGTAAAGCTTCAGA+AGG | + | chr1_3:4649184-4649203 | Msa0098630:CDS | 45.0% | |
| GTGGTGGTAAAGCTTCAGAA+GGG | + | chr1_3:4649185-4649204 | Msa0098630:CDS | 45.0% | |
| GTTGAAATGGTGAGGGGTCA+AGG | - | chr1_3:4645375-4645394 | None:intergenic | 50.0% | |
| ATGTGATCGGATAGCGAGTG+AGG | - | chr1_3:4645549-4645568 | None:intergenic | 50.0% | |
| GATCGGAGTGAGCATGTGAT+CGG | - | chr1_3:4645562-4645581 | None:intergenic | 50.0% | |
| !! | CAGTGGTGGAGTTGATGAGT+TGG | - | chr1_3:4645589-4645608 | None:intergenic | 50.0% |
| GGAGATATTGGAGTCAGTGG+TGG | - | chr1_3:4645603-4645622 | None:intergenic | 50.0% | |
| GAGGGAGATATTGGAGTCAG+TGG | - | chr1_3:4645606-4645625 | None:intergenic | 50.0% | |
| ! | AGTGGTGGAGAGGGAGATAT+TGG | - | chr1_3:4645615-4645634 | None:intergenic | 50.0% |
| ATTACAGTGCCTGAATCGGG+AGG | + | chr1_3:4645855-4645874 | Msa0098630:intron | 50.0% | |
| TAGAGAGAGACAGAGAGCTG+GGG | + | chr1_3:4646269-4646288 | Msa0098630:intron | 50.0% | |
| TGGTGGAAACTAAGGTCAGG+TGG | + | chr1_3:4646315-4646334 | Msa0098630:intron | 50.0% | |
| CTACAACCAAGTCGGCTACA+TGG | - | chr1_3:4646475-4646494 | None:intergenic | 50.0% | |
| CGAACTAAATCCAGCAACCG+TGG | + | chr1_3:4646645-4646664 | Msa0098630:intron | 50.0% | |
| TTCGACATATCCACGGTTGC+TGG | - | chr1_3:4646658-4646677 | None:intergenic | 50.0% | |
| GGATGCATATTCACCGAACC+AGG | - | chr1_3:4646716-4646735 | None:intergenic | 50.0% | |
| CTCCAGTACAGCCTGATTCA+AGG | - | chr1_3:4646805-4646824 | None:intergenic | 50.0% | |
| ! | TTGGGGTGTCTTCACCTCTA+TGG | - | chr1_3:4646985-4647004 | None:intergenic | 50.0% |
| CGTAAATCTAGCTGCAGCAC+CGG | - | chr1_3:4647153-4647172 | None:intergenic | 50.0% | |
| !! | CGGTGCTGCAGCTAGATTTA+CGG | + | chr1_3:4647151-4647170 | Msa0098630:CDS | 50.0% |
| AAAGCCTCCGGGTCCAATAA+TGG | - | chr1_3:4647489-4647508 | None:intergenic | 50.0% | |
| ! | CGATCTGTTGCTGTTCTTGG+TGG | + | chr1_3:4647930-4647949 | Msa0098630:CDS | 50.0% |
| CATGGCATGAATGTCTGCAG+AGG | - | chr1_3:4648293-4648312 | None:intergenic | 50.0% | |
| GTGCTGTGATGTACTTGCAG+TGG | + | chr1_3:4648541-4648560 | Msa0098630:intron | 50.0% | |
| AGTTACAGTTCACCGGCGAG+GGG | - | chr1_3:4645412-4645431 | None:intergenic | 55.0% | |
| CAGTTACAGTTCACCGGCGA+GGG | - | chr1_3:4645413-4645432 | None:intergenic | 55.0% | |
| TGCCAACTGCTAACCTTCGC+CGG | + | chr1_3:4645431-4645450 | Msa0098630:CDS | 55.0% | |
| ! | TGGTGTTAACATTGCCGCGC+CGG | - | chr1_3:4645453-4645472 | None:intergenic | 55.0% |
| CTGTCACCACCAACACCAAG+TGG | - | chr1_3:4645499-4645518 | None:intergenic | 55.0% | |
| CGGATAGCGAGTGAGGAATG+AGG | - | chr1_3:4645542-4645561 | None:intergenic | 55.0% | |
| ! | TTGACGAGGAGTGGTGGAGA+GGG | - | chr1_3:4645624-4645643 | None:intergenic | 55.0% |
| GAAGGAACCTTGACGAGGAG+TGG | - | chr1_3:4645633-4645652 | None:intergenic | 55.0% | |
| AGAGAGAGACAGAGAGCTGG+GGG | + | chr1_3:4646270-4646289 | Msa0098630:intron | 55.0% | |
| GACTACAGGGAACCCTGGTT+CGG | + | chr1_3:4646700-4646719 | Msa0098630:intron | 55.0% | |
| ! | TAGCTGCAGCACCGGATACT+TGG | - | chr1_3:4647145-4647164 | None:intergenic | 55.0% |
| !! | GGTGTCGCGTTTGCTTTTGC+TGG | + | chr1_3:4647309-4647328 | Msa0098630:CDS | 55.0% |
| ! | GCTGGCTCCATTATTGGACC+CGG | + | chr1_3:4647479-4647498 | Msa0098630:CDS | 55.0% |
| GCAGTTACAGTTCACCGGCG+AGG | - | chr1_3:4645414-4645433 | None:intergenic | 60.0% | |
| ! | CTTGACGAGGAGTGGTGGAG+AGG | - | chr1_3:4645625-4645644 | None:intergenic | 60.0% |
| CTCTCCACCACTCCTCGTCA+AGG | + | chr1_3:4645623-4645642 | Msa0098630:CDS | 60.0% | |
| GGAACCTTGACGAGGAGTGG+TGG | - | chr1_3:4645630-4645649 | None:intergenic | 60.0% | |
| TCGGCGAAGGAACCTTGACG+AGG | - | chr1_3:4645638-4645657 | None:intergenic | 60.0% | |
| GAGAGAGACAGAGAGCTGGG+GGG | + | chr1_3:4646271-4646290 | Msa0098630:intron | 60.0% | |
| GGCTCCATTATTGGACCCGG+AGG | + | chr1_3:4647482-4647501 | Msa0098630:CDS | 60.0% | |
| TCTGGTAGGGATGGCGTGAG+TGG | - | chr1_3:4648802-4648821 | None:intergenic | 60.0% | |
| GCTCACTACTCTCCCCTCGC+CGG | + | chr1_3:4645397-4645416 | Msa0098630:CDS | 65.0% | |
| CGCCGGCGAAGGTTAGCAGT+TGG | - | chr1_3:4645436-4645455 | None:intergenic | 65.0% | |
| ACTGCTAACCTTCGCCGGCG+CGG | + | chr1_3:4645436-4645455 | Msa0098630:CDS | 65.0% | |
| ! | TAACATTGCCGCGCCGGCGA+AGG | - | chr1_3:4645447-4645466 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4645328 | 4649450 | 4645328 | ID=Msa0098630;Name=Msa0098630 |
| chr1_3 | mRNA | 4645328 | 4649450 | 4645328 | ID=Msa0098630-mRNA-1;Parent=Msa0098630;Name=Msa0098630-mRNA-1;_AED=0.12;_eAED=0.12;_QI=31|1|0.90|1|1|1|11|0|348 |
| chr1_3 | exon | 4645328 | 4645719 | 4645328 | ID=Msa0098630-mRNA-1:exon:1595;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4645862 | 4645905 | 4645862 | ID=Msa0098630-mRNA-1:exon:1596;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4646813 | 4646871 | 4646813 | ID=Msa0098630-mRNA-1:exon:1597;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4646970 | 4647021 | 4646970 | ID=Msa0098630-mRNA-1:exon:1598;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4647111 | 4647172 | 4647111 | ID=Msa0098630-mRNA-1:exon:1599;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4647263 | 4647338 | 4647263 | ID=Msa0098630-mRNA-1:exon:1600;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4647458 | 4647532 | 4647458 | ID=Msa0098630-mRNA-1:exon:1601;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4647740 | 4647811 | 4647740 | ID=Msa0098630-mRNA-1:exon:1602;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4647918 | 4648001 | 4647918 | ID=Msa0098630-mRNA-1:exon:1603;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4649181 | 4649249 | 4649181 | ID=Msa0098630-mRNA-1:exon:1604;Parent=Msa0098630-mRNA-1 |
| chr1_3 | exon | 4649361 | 4649450 | 4649361 | ID=Msa0098630-mRNA-1:exon:1605;Parent=Msa0098630-mRNA-1 |
| chr1_3 | five_prime_UTR | 4645328 | 4645358 | 4645328 | ID=Msa0098630-mRNA-1:five_prime_utr;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4645359 | 4645719 | 4645359 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4645862 | 4645905 | 4645862 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4646813 | 4646871 | 4646813 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4646970 | 4647021 | 4646970 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4647111 | 4647172 | 4647111 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4647263 | 4647338 | 4647263 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4647458 | 4647532 | 4647458 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4647740 | 4647811 | 4647740 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4647918 | 4648001 | 4647918 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4649181 | 4649249 | 4649181 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| chr1_3 | CDS | 4649361 | 4649450 | 4649361 | ID=Msa0098630-mRNA-1:cds;Parent=Msa0098630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
