AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0005070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005070 MtrunA17_Chr1g0151641 92.540 630 33 5 1 617 1 629 0.0 1127
Msa0005070 MtrunA17_Chr8g0389231 74.112 591 129 7 46 616 5 591 0.0 833
Msa0005070 MtrunA17_Chr6g0475301 68.000 525 149 6 86 594 38 559 0.0 666
Msa0005070 MtrunA17_Chr8g0349591 31.215 362 232 6 215 566 594 948 8.73e-34 138
Msa0005070 MtrunA17_Chr7g0247081 30.168 358 241 6 215 566 609 963 1.48e-29 125
Msa0005070 MtrunA17_Chr4g0049391 28.780 410 242 8 220 601 134 521 5.28e-26 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005070 AT5G11800.1 79.362 533 94 5 93 615 69 595 0.0 821
Msa0005070 AT2G19600.1 77.574 544 113 4 79 616 51 591 0.0 808
Msa0005070 AT5G51710.1 67.761 518 149 5 86 588 34 548 0.0 673
Msa0005070 AT5G51710.2 67.761 518 149 5 86 588 34 548 0.0 673
Msa0005070 AT4G00630.2 29.973 367 241 5 215 566 591 956 2.79e-33 137
Msa0005070 AT4G00630.1 30.919 359 237 6 215 566 591 945 1.32e-32 135
Msa0005070 AT1G01790.1 30.168 358 241 5 215 566 611 965 9.81e-32 132
Msa0005070 AT1G01790.2 30.168 358 241 5 215 566 611 965 9.81e-32 132
Msa0005070 AT4G04850.2 30.052 386 234 7 211 569 121 497 1.77e-31 130
Msa0005070 AT4G04850.1 30.052 386 234 7 211 569 121 497 4.59e-31 129

Find 137 sgRNAs with CRISPR-Local

Find 515 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGAACCATGTTGATATTT+TGG 0.131221 1_1:-7534948 Msa0005070:CDS
CTTTGCATTGCTCCCAGTTT+TGG 0.139277 1_1:-7538705 Msa0005070:CDS
CTTCTAGCTGGCTCCATTAT+TGG 0.163413 1_1:-7540788 Msa0005070:CDS
TAACAATTACCAAATGATTT+TGG 0.216905 1_1:+7542797 None:intergenic
TTTGGTAGCATCGGTTATTT+TGG 0.221588 1_1:-7534930 Msa0005070:CDS
GACAAAGTACCTGTAAAATA+AGG 0.229903 1_1:+7538837 None:intergenic
GTTCGATCTGTTGCTGTTCT+TGG 0.238691 1_1:-7540334 Msa0005070:CDS
AGTGGTGGAGAGGGAGATAT+TGG 0.246776 1_1:+7542655 None:intergenic
ATAATTGCTTCAGTTGTAAA+AGG 0.249269 1_1:-7534887 Msa0005070:CDS
ATTAACAATCATGAGCTTCT+TGG 0.267217 1_1:+7533455 None:intergenic
CAATCTGCTTGCTTGTAGCC+TGG 0.272823 1_1:-7536050 Msa0005070:CDS
AAGCTATATCTGCTGCTTCT+TGG 0.282785 1_1:-7534010 Msa0005070:CDS
CCTGAGGTGCCACCCAAAAC+TGG 0.300678 1_1:+7538692 None:intergenic
TCTTATTATGATTACCTTGT+TGG 0.306362 1_1:+7542555 None:intergenic
GCTTCAGTTGTAAAAGGATT+TGG 0.310695 1_1:-7534881 Msa0005070:CDS
AGCTATATCTGCTGCTTCTT+GGG 0.315855 1_1:-7534009 Msa0005070:CDS
AACACTACTAATGCCCTTCA+TGG 0.322915 1_1:-7538878 Msa0005070:CDS
ATTATATGGCAGGTCATTAC+TGG 0.325742 1_1:-7540815 Msa0005070:intron
TTGTTGAAACCTCCCGATTC+AGG 0.329351 1_1:+7542401 None:intergenic
CTTGGTAGTTGCTATTGTTT+CGG 0.364278 1_1:-7540986 Msa0005070:CDS
CCTTTCGATCAATTAACATT+GGG 0.366471 1_1:+7541261 None:intergenic
CGGTGCTGCAGCTAGATTTA+CGG 0.367469 1_1:-7541110 Msa0005070:intron
TTGGGGTGTCTTCACCTCTA+TGG 0.368082 1_1:+7541279 None:intergenic
AAAGCCTCCGGGTCCAATAA+TGG 0.374923 1_1:+7540775 None:intergenic
TTCCTTGAATCAGGCTGTAC+TGG 0.377063 1_1:-7541461 Msa0005070:intron
CTTCATGGACAAGTCACAAT+TGG 0.388980 1_1:-7538863 Msa0005070:CDS
TAGCTGCAGCACCGGATACT+TGG 0.392289 1_1:+7541119 None:intergenic
CTTTAACTTCATCAATGAAA+TGG 0.394888 1_1:-7540756 Msa0005070:CDS
TCCTTGAAGGATTGTGCTGT+TGG 0.406340 1_1:-7538734 Msa0005070:intron
GAGTAGTGAGCAAGTTGAAA+TGG 0.406765 1_1:+7542882 None:intergenic
TTTAATTACAGTGCCTGAAT+CGG 0.406779 1_1:-7542414 Msa0005070:intron
TAACTTTAAATCCAAGTATC+CGG 0.413634 1_1:-7541130 Msa0005070:CDS
ATTCCTGCTGTAGTGCATCT+TGG 0.418175 1_1:-7533669 Msa0005070:CDS
TGCAGCGAAAAGATTGCAAA+TGG 0.422770 1_1:+7535015 None:intergenic
CTTACTTGTTCTAGTGTATG+TGG 0.423068 1_1:+7535589 None:intergenic
TGATTCATGTTCATTTCCTC+TGG 0.424185 1_1:-7534967 Msa0005070:CDS
CAACAGTGTTGCAGAACAAC+AGG 0.443040 1_1:-7542381 Msa0005070:intron
AATCTGCTTGCTTGTAGCCT+GGG 0.444733 1_1:-7536049 Msa0005070:intron
ATTGATGAAGTTAAAGCCTC+CGG 0.446723 1_1:+7540763 None:intergenic
TGGGACCACAGCTCTTAGTC+TGG 0.448458 1_1:-7533990 Msa0005070:intron
CGATCTGTTGCTGTTCTTGG+TGG 0.449460 1_1:-7540331 Msa0005070:CDS
TGCATCTTGGTGTGCTATTG+AGG 0.450565 1_1:-7533656 Msa0005070:CDS
ACAAAGTACCTGTAAAATAA+GGG 0.453500 1_1:+7538838 None:intergenic
ATGTTAACACCAAAATCATT+TGG 0.455343 1_1:-7542806 Msa0005070:CDS
GAACTAGGTTCCTTTGCTGC+TGG 0.455758 1_1:-7535640 Msa0005070:CDS
CAGTGGTGGAGTTGATGAGT+TGG 0.457520 1_1:+7542681 None:intergenic
ACCTTTCGATCAATTAACAT+TGG 0.467353 1_1:+7541260 None:intergenic
TTAATTACAGTGCCTGAATC+GGG 0.473538 1_1:-7542413 Msa0005070:intron
GATAACCTCCGCTCAGATAG+TGG 0.481773 1_1:-7533502 Msa0005070:CDS
TTATAGATTGATTTCAGACT+TGG 0.483413 1_1:-7541004 Msa0005070:intron
AGGAATGAGGTAGAAGAAGA+AGG 0.491715 1_1:+7542741 None:intergenic
GTGGAAACAGTGGCTCAATT+CGG 0.495141 1_1:-7540521 Msa0005070:CDS
GGAATCAGCTTGAAAAGTAA+AGG 0.499454 1_1:+7533687 None:intergenic
GATGATTGCAACCACTGATC+TGG 0.499507 1_1:-7535614 Msa0005070:CDS
ATTACTGGATATCTTCTAGC+TGG 0.502180 1_1:-7540800 Msa0005070:CDS
CGCCGGCGAAGGTTAGCAGT+TGG 0.502664 1_1:+7542834 None:intergenic
GTTGAAATGGTGAGGGGTCA+AGG 0.504293 1_1:+7542895 None:intergenic
TTCATGGACAAGTCACAATT+GGG 0.505486 1_1:-7538862 Msa0005070:CDS
TCAGCATTCCAATGCTTGAA+AGG 0.508662 1_1:+7534987 None:intergenic
CGTAAATCTAGCTGCAGCAC+CGG 0.508983 1_1:+7541111 None:intergenic
GGAATGTCCATGGCACAGAT+AGG 0.513270 1_1:-7534737 Msa0005070:CDS
TGGTGTTAACATTGCCGCGC+CGG 0.513443 1_1:+7542817 None:intergenic
GAGGGAGATATTGGAGTCAG+TGG 0.515404 1_1:+7542664 None:intergenic
AAGAGCACGATCAATGATAT+CGG 0.515596 1_1:+7542613 None:intergenic
CTGCTGTTGAAGACATAGAA+AGG 0.516801 1_1:+7539036 None:intergenic
CAGTTACAGTTCACCGGCGA+GGG 0.517471 1_1:+7542857 None:intergenic
GGAGATATTGGAGTCAGTGG+TGG 0.522237 1_1:+7542667 None:intergenic
CTAAGCATAGATTGGATACA+AGG 0.524112 1_1:-7533527 Msa0005070:intron
GACAAATGAACTCTATCAGC+TGG 0.527577 1_1:-7536082 Msa0005070:CDS
CTTCATCAATGAAATGGTGC+AGG 0.531070 1_1:-7540750 Msa0005070:intron
ACACCAAGATGCACTACAGC+AGG 0.532394 1_1:+7533666 None:intergenic
TTCAAATCTTCATCTAGTTG+AGG 0.533473 1_1:-7534684 Msa0005070:intron
TTACAACCACTTGGTGTTGG+TGG 0.533597 1_1:-7542777 Msa0005070:CDS
CCCAATGTTAATTGATCGAA+AGG 0.537649 1_1:-7541261 Msa0005070:intron
ATTACCTCTACTGCACTGTC+AGG 0.538655 1_1:+7533624 None:intergenic
CTCTCCACCACTCCTCGTCA+AGG 0.538720 1_1:-7542644 Msa0005070:CDS
TTTCTATTTATGTGCATGTG+TGG 0.539434 1_1:-7540295 Msa0005070:CDS
TTCTCCTGACAGTGCAGTAG+AGG 0.541819 1_1:-7533628 Msa0005070:intron
CTGAGGTGCCACCCAAAACT+GGG 0.545736 1_1:+7538693 None:intergenic
TTCTATGTCTTCAACAGCAG+TGG 0.546303 1_1:-7539033 Msa0005070:intron
GTGAGCAAGTTGAAATGGTG+AGG 0.550073 1_1:+7542887 None:intergenic
AAATAAGCCAACCTTTGTCA+TGG 0.550185 1_1:+7540460 None:intergenic
TTGACGAGGAGTGGTGGAGA+GGG 0.550939 1_1:+7542646 None:intergenic
TGCCAACTGCTAACCTTCGC+CGG 0.553207 1_1:-7542836 Msa0005070:CDS
GTTGATGAGTTGGATTTGAT+CGG 0.553775 1_1:+7542691 None:intergenic
CAATTGTGACTTGTCCATGA+AGG 0.554654 1_1:+7538864 None:intergenic
TAACATTGCCGCGCCGGCGA+AGG 0.556916 1_1:+7542823 None:intergenic
TTGATGAAGTTAAAGCCTCC+GGG 0.562820 1_1:+7540764 None:intergenic
CTGGGATTAAGTCTAGAACT+AGG 0.566825 1_1:-7535655 Msa0005070:CDS
TGTCTCGCACTTGCCTTCCG+TGG 0.567926 1_1:-7536318 Msa0005070:CDS
AATTGTGACTTGTCCATGAA+GGG 0.569323 1_1:+7538865 None:intergenic
AGTTGGCAGTTACAGTTCAC+CGG 0.573943 1_1:+7542851 None:intergenic
GAAGGAACCTTGACGAGGAG+TGG 0.573992 1_1:+7542637 None:intergenic
AGGTCATTTCAACTCCATAG+AGG 0.574234 1_1:-7541293 Msa0005070:CDS
GATGATAAGTCTATCGTCAC+AGG 0.575405 1_1:-7536284 Msa0005070:intron
AATCATCACTCCAGCAGCAA+AGG 0.576090 1_1:+7535630 None:intergenic
TTTCAGTGTAGCGATAAGCT+GGG 0.576357 1_1:-7535673 Msa0005070:intron
TGGTAATTGTTACAACCACT+TGG 0.578737 1_1:-7542786 Msa0005070:CDS
CGGATAGCGAGTGAGGAATG+AGG 0.579924 1_1:+7542728 None:intergenic
ATCTTGGTGTGCTATTGAGG+TGG 0.583094 1_1:-7533653 Msa0005070:CDS
GATCGGAGTGAGCATGTGAT+CGG 0.583743 1_1:+7542708 None:intergenic
TTGTTACAACCACTTGGTGT+TGG 0.587535 1_1:-7542780 Msa0005070:CDS
GGAACCTTGACGAGGAGTGG+TGG 0.589759 1_1:+7542640 None:intergenic
CCTTTGTCATGGAAAACTCC+AGG 0.589774 1_1:+7540471 None:intergenic
GCAGCGAAAAGATTGCAAAT+GGG 0.592154 1_1:+7535016 None:intergenic
TCAGTTTAAGCAACCACGGA+AGG 0.594835 1_1:+7536305 None:intergenic
CTTTCGATCAATTAACATTG+GGG 0.595338 1_1:+7541262 None:intergenic
GCTATTGTTTCGGCAACTTG+TGG 0.596030 1_1:-7540976 Msa0005070:CDS
GCTCACTACTCTCCCCTCGC+CGG 0.597630 1_1:-7542870 Msa0005070:CDS
TGTGGTGGTAAAGCTTCAGA+AGG 0.597905 1_1:-7539077 Msa0005070:CDS
CTTGACGAGGAGTGGTGGAG+AGG 0.604358 1_1:+7542645 None:intergenic
TGAGCAAGTTGAAATGGTGA+GGG 0.608389 1_1:+7542888 None:intergenic
ATTGTTTCGGCAACTTGTGG+TGG 0.611297 1_1:-7540973 Msa0005070:CDS
GCTGGCTCCATTATTGGACC+CGG 0.611628 1_1:-7540782 Msa0005070:CDS
AAATTCTCCTATCTGTGCCA+TGG 0.612084 1_1:+7534730 None:intergenic
ATGTGATCGGATAGCGAGTG+AGG 0.614623 1_1:+7542721 None:intergenic
GGCTCCATTATTGGACCCGG+AGG 0.616606 1_1:-7540779 Msa0005070:CDS
TTTATAGGTAGGAATGTCCA+TGG 0.617601 1_1:-7534747 Msa0005070:intron
GCAGTTACAGTTCACCGGCG+AGG 0.617908 1_1:+7542856 None:intergenic
ATCATCAGTTTAAGCAACCA+CGG 0.625233 1_1:+7536301 None:intergenic
AAATATCAACATGGTTCCAG+AGG 0.633087 1_1:+7534951 None:intergenic
ATTACAGTGCCTGAATCGGG+AGG 0.635955 1_1:-7542410 Msa0005070:intron
ACGATCAATGATATCGGCGA+AGG 0.640359 1_1:+7542619 None:intergenic
AGTTACAGTTCACCGGCGAG+GGG 0.643154 1_1:+7542858 None:intergenic
CTGTCACCACCAACACCAAG+TGG 0.643448 1_1:+7542771 None:intergenic
GCTTGCCACTATCTGAGCGG+AGG 0.648548 1_1:+7533497 None:intergenic
ACTGCTAACCTTCGCCGGCG+CGG 0.649563 1_1:-7542831 Msa0005070:CDS
GTGGTGGTAAAGCTTCAGAA+GGG 0.658870 1_1:-7539076 Msa0005070:CDS
TTAATCATTGCACTGCACCA+AGG 0.692011 1_1:-7533437 Msa0005070:exon
TCTTACCAGACTAAGAGCTG+TGG 0.692418 1_1:+7533985 None:intergenic
ATGAACTTAGGTGGAAACAG+TGG 0.697930 1_1:-7540531 Msa0005070:intron
GAGCAAGTTGAAATGGTGAG+GGG 0.699052 1_1:+7542889 None:intergenic
AACGATGATCAAAACCAACA+AGG 0.699159 1_1:-7542569 Msa0005070:intron
TGTATGTGGAGCCAGATCAG+TGG 0.710307 1_1:+7535603 None:intergenic
TCGGCGAAGGAACCTTGACG+AGG 0.713013 1_1:+7542632 None:intergenic
GCTGCTTGCCACTATCTGAG+CGG 0.714373 1_1:+7533494 None:intergenic
ATGCTACCAAAATATCAACA+TGG 0.721931 1_1:+7534942 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAT+TGG + chr1_1:7539155-7539174 None:intergenic 0.0%
!! TGAAATTATTTGTATTAAAT+AGG - chr1_1:7534077-7534096 Msa0005070:intron 10.0%
!! TTAAGTCATAAAATTAAATA+AGG + chr1_1:7536129-7536148 None:intergenic 10.0%
!! GTAAGAATTAAAAAAAAAAA+AGG + chr1_1:7539346-7539365 None:intergenic 10.0%
!! ACTTATATATTAATTAATAC+GGG - chr1_1:7539382-7539401 Msa0005070:intron 10.0%
!!! CGTTAATAAATTTTATATTT+TGG - chr1_1:7539762-7539781 Msa0005070:intron 10.0%
!! ATAAAAATCTATTAATGAGT+TGG - chr1_1:7534496-7534515 Msa0005070:intron 15.0%
!!! ATATTTATTCTTTTTGCATT+GGG - chr1_1:7535838-7535857 Msa0005070:intron 15.0%
!!! ATTTTATGACTTAAACTTAA+TGG - chr1_1:7536135-7536154 Msa0005070:intron 15.0%
!!! TTTTATGACTTAAACTTAAT+GGG - chr1_1:7536136-7536155 Msa0005070:intron 15.0%
!! AGTATTTCTTTGTATATTTA+AGG + chr1_1:7536447-7536466 None:intergenic 15.0%
!! AAACATAGTAATTTAATCAA+AGG - chr1_1:7537034-7537053 Msa0005070:intron 15.0%
!! ACACTCAAATTATATTATAT+GGG + chr1_1:7537105-7537124 None:intergenic 15.0%
!! AACACTCAAATTATATTATA+TGG + chr1_1:7537106-7537125 None:intergenic 15.0%
!! TATAATATAATTTGAGTGTT+TGG - chr1_1:7537106-7537125 Msa0005070:intron 15.0%
!! TGAATTTATAATGATATTCA+GGG + chr1_1:7538463-7538482 None:intergenic 15.0%
!! ATGAATTTATAATGATATTC+AGG + chr1_1:7538464-7538483 None:intergenic 15.0%
!! AAAAAAAAAAAAAATTGGTG+TGG + chr1_1:7539150-7539169 None:intergenic 15.0%
!! CTTATATATTAATTAATACG+GGG - chr1_1:7539383-7539402 Msa0005070:intron 15.0%
!! AGTATTAGTTAATTATTTGA+CGG - chr1_1:7539633-7539652 Msa0005070:intron 15.0%
!!! GAATTGAATTTTTTTTTGTT+TGG - chr1_1:7540164-7540183 Msa0005070:intron 15.0%
!! TGCATAAAAATTCTAAATAT+TGG - chr1_1:7540879-7540898 Msa0005070:intron 15.0%
!!! TAACAATTACCAAATGATTT+TGG + chr1_1:7533538-7533557 None:intergenic 20.0%
!! TCTCAAACATTAAAATAGTT+TGG + chr1_1:7533893-7533912 None:intergenic 20.0%
!! ATTTCATGTTTCAACTTATA+AGG + chr1_1:7534063-7534082 None:intergenic 20.0%
!!! TAATGAGTTGGATAAAAATA+AGG - chr1_1:7534508-7534527 Msa0005070:intron 20.0%
!!! ATGTATTTTTCTAAACTTAC+AGG - chr1_1:7535019-7535038 Msa0005070:CDS 20.0%
!!! TTACATTTTCAACATAAGAT+GGG - chr1_1:7535262-7535281 Msa0005070:intron 20.0%
!!! AATATCCTGAAAGTATTATA+TGG - chr1_1:7535503-7535522 Msa0005070:intron 20.0%
!!! GATATTTATTCTTTTTGCAT+TGG - chr1_1:7535837-7535856 Msa0005070:intron 20.0%
!! ACATAACAAAAAAGAGAAAA+GGG + chr1_1:7535909-7535928 None:intergenic 20.0%
!! AACATAACAAAAAAGAGAAA+AGG + chr1_1:7535910-7535929 None:intergenic 20.0%
!! TTTATGACTTAAACTTAATG+GGG - chr1_1:7536137-7536156 Msa0005070:intron 20.0%
!!! TTAGTAGATTTTGAAAAAAC+TGG - chr1_1:7536548-7536567 Msa0005070:intron 20.0%
!! AAACTGTAAAGAAACAATAA+TGG - chr1_1:7536731-7536750 Msa0005070:intron 20.0%
!! CTTCAATTTGTATTATACTA+GGG + chr1_1:7536933-7536952 None:intergenic 20.0%
!!! TTCAGTTTTAATGGATATTA+TGG - chr1_1:7537134-7537153 Msa0005070:intron 20.0%
!!! TGATCTTTATTTTTCCAATA+TGG - chr1_1:7537524-7537543 Msa0005070:intron 20.0%
!!! TGAATTTTTTTTTTCCTTGA+AGG - chr1_1:7537585-7537604 Msa0005070:intron 20.0%
!! TGAATATCATTATGAAATGA+GGG - chr1_1:7538700-7538719 Msa0005070:CDS 20.0%
!! TGAATATCATTATGAAATGA+GGG - chr1_1:7538700-7538719 Msa0005070:CDS 20.0%
!!! TTTTTTTTGTTTGGTTCTTA+TGG - chr1_1:7540173-7540192 Msa0005070:intron 20.0%
!! ATACAGAAATGTGAAAAATA+AGG + chr1_1:7540320-7540339 None:intergenic 20.0%
!!! TTCTAGAGTTTATGTTTAAA+AGG - chr1_1:7540488-7540507 Msa0005070:CDS 20.0%
!! AATATCAATTGATTGTTGAA+TGG - chr1_1:7540813-7540832 Msa0005070:intron 20.0%
!! AATTAAGAACACAGAAAAAA+TGG + chr1_1:7541220-7541239 None:intergenic 20.0%
!!! AATGCTTGATAATATATGAA+TGG - chr1_1:7541242-7541261 Msa0005070:intron 20.0%
!! GATAATATATGAATGGTTTA+TGG - chr1_1:7541249-7541268 Msa0005070:intron 20.0%
!! GAATTTAGAAGATTATAATG+CGG - chr1_1:7541520-7541539 Msa0005070:intron 20.0%
!!! ATTGTCATTTAACATTGTTT+TGG - chr1_1:7541913-7541932 Msa0005070:intron 20.0%
!! TATTGAATATAGCTTGAAAT+TGG + chr1_1:7541961-7541980 None:intergenic 20.0%
!!! ATTGTCATTTAACTTTGTTT+TGG + chr1_1:7542049-7542068 None:intergenic 20.0%
!! TATTTGAATCAATAGTTACT+AGG - chr1_1:7542380-7542399 Msa0005070:intron 20.0%
!! ACAAATTATAACAGAACTTA+AGG + chr1_1:7542476-7542495 None:intergenic 20.0%
! ATGTTAACACCAAAATCATT+TGG - chr1_1:7533526-7533545 Msa0005070:intron 25.0%
! TCTTATTATGATTACCTTGT+TGG + chr1_1:7533780-7533799 None:intergenic 25.0%
! AGGTAATCATAATAAGATCT+TGG - chr1_1:7533783-7533802 Msa0005070:intron 25.0%
! ATTGCATATTACTTCCATTT+AGG - chr1_1:7533999-7534018 Msa0005070:CDS 25.0%
! GTAACAAAATCTTTCCTAAA+TGG + chr1_1:7534016-7534035 None:intergenic 25.0%
! GATTGTATTGTAGACTTTAA+TGG - chr1_1:7534142-7534161 Msa0005070:intron 25.0%
! AAATCTAGAGATTAACAAGT+TGG - chr1_1:7534457-7534476 Msa0005070:intron 25.0%
! TAAAGTGGAAACATCAAATA+AGG + chr1_1:7534588-7534607 None:intergenic 25.0%
!! CACTAACTAAATCTTTAAAG+TGG + chr1_1:7534603-7534622 None:intergenic 25.0%
!! CACTTTAAAGATTTAGTTAG+TGG - chr1_1:7534601-7534620 Msa0005070:intron 25.0%
!!! TCTTTAGTGTCATTTTTGTT+CGG + chr1_1:7534917-7534936 None:intergenic 25.0%
! TAACTTTAAATCCAAGTATC+CGG - chr1_1:7535202-7535221 Msa0005070:intron 25.0%
!! GTTACATTTTCAACATAAGA+TGG - chr1_1:7535261-7535280 Msa0005070:intron 25.0%
!! TACATTTTCAACATAAGATG+GGG - chr1_1:7535263-7535282 Msa0005070:intron 25.0%
!! TTATAGATTGATTTCAGACT+TGG - chr1_1:7535328-7535347 Msa0005070:intron 25.0%
! TAGAACAAGAATATTCATAC+CGG + chr1_1:7535410-7535429 None:intergenic 25.0%
!! CTTTAACTTCATCAATGAAA+TGG - chr1_1:7535576-7535595 Msa0005070:intron 25.0%
!! TTAGGTTTCTTTTCATAGAT+AGG + chr1_1:7535731-7535750 None:intergenic 25.0%
! CATAACAAAAAAGAGAAAAG+GGG + chr1_1:7535908-7535927 None:intergenic 25.0%
!!! CTTTTTTGTTATGTTTATGC+TGG - chr1_1:7535915-7535934 Msa0005070:intron 25.0%
! AAGCATGTATATAGAAAGTA+GGG + chr1_1:7535965-7535984 None:intergenic 25.0%
! AGCAATAATTGAGTTTCTAT+GGG + chr1_1:7536262-7536281 None:intergenic 25.0%
! AAGCAATAATTGAGTTTCTA+TGG + chr1_1:7536263-7536282 None:intergenic 25.0%
! TAGAAACTCAATTATTGCTT+TGG - chr1_1:7536263-7536282 Msa0005070:intron 25.0%
! ATCTTTCGACATAAATCATT+TGG + chr1_1:7536291-7536310 None:intergenic 25.0%
! TCAGATCATGCAATAAATAA+AGG + chr1_1:7536412-7536431 None:intergenic 25.0%
! TGTATATTTAAGGATGACAA+GGG + chr1_1:7536437-7536456 None:intergenic 25.0%
! TTGTATATTTAAGGATGACA+AGG + chr1_1:7536438-7536457 None:intergenic 25.0%
!!! ATACTGATTTTAATACCCAA+AGG - chr1_1:7536462-7536481 Msa0005070:intron 25.0%
! AAAGATGAAACTTAACCTTT+GGG + chr1_1:7536480-7536499 None:intergenic 25.0%
! AAAAGATGAAACTTAACCTT+TGG + chr1_1:7536481-7536500 None:intergenic 25.0%
!! TGTAAAGAAACAATAATGGA+AGG - chr1_1:7536735-7536754 Msa0005070:intron 25.0%
! CCTTCAATTTGTATTATACT+AGG + chr1_1:7536934-7536953 None:intergenic 25.0%
! CCTAGTATAATACAAATTGA+AGG - chr1_1:7536931-7536950 Msa0005070:intron 25.0%
! AGTAATTTAATCAAAGGAGA+AGG - chr1_1:7537040-7537059 Msa0005070:intron 25.0%
! ATCAAGAAAAAGAAACAACA+TGG + chr1_1:7537073-7537092 None:intergenic 25.0%
!!! TTGGTGTATTTCAGTTTTAA+TGG - chr1_1:7537125-7537144 Msa0005070:intron 25.0%
! AGAAACAGAAAAGTTATTAC+CGG + chr1_1:7537392-7537411 None:intergenic 25.0%
!! ACAAAGTACCTGTAAAATAA+GGG + chr1_1:7537497-7537516 None:intergenic 25.0%
! AGTCTTAATATAGCATTTGT+TGG + chr1_1:7537563-7537582 None:intergenic 25.0%
! TATAGAACTTCATAAGTCTT+TGG - chr1_1:7537701-7537720 Msa0005070:intron 25.0%
! TGCAACACAAATATTGATAA+GGG + chr1_1:7537899-7537918 None:intergenic 25.0%
! TTGCAACACAAATATTGATA+AGG + chr1_1:7537900-7537919 None:intergenic 25.0%
! CTGAATATCATTATGAAATG+AGG - chr1_1:7538699-7538718 Msa0005070:CDS 25.0%
! CTGAATATCATTATGAAATG+AGG - chr1_1:7538699-7538718 Msa0005070:CDS 25.0%
!!! CTGTATTTTTACTCGTATAT+TGG - chr1_1:7539312-7539331 Msa0005070:intron 25.0%
! ATGAACTCAAAATGGATAAA+AGG + chr1_1:7539870-7539889 None:intergenic 25.0%
! ATCTTCAAATGAACTCAAAA+TGG + chr1_1:7539878-7539897 None:intergenic 25.0%
!! GGGTATTTTATCATTAAAGA+GGG + chr1_1:7540087-7540106 None:intergenic 25.0%
!! TGGGTATTTTATCATTAAAG+AGG + chr1_1:7540088-7540107 None:intergenic 25.0%
! CTTTAATGATAAAATACCCA+TGG - chr1_1:7540088-7540107 Msa0005070:intron 25.0%
! TTCTTAATGTCATACAACAA+TGG - chr1_1:7540126-7540145 Msa0005070:intron 25.0%
!! CACATTTCTGTATTTTTCTT+TGG - chr1_1:7540327-7540346 Msa0005070:CDS 25.0%
! ATAACTCATGCCAAAAAAAT+TGG + chr1_1:7540523-7540542 None:intergenic 25.0%
!! GAACAAGTAAGATATTTTAC+AGG - chr1_1:7540755-7540774 Msa0005070:CDS 25.0%
! CATACTGATACTACTTAAAA+AGG + chr1_1:7540994-7541013 None:intergenic 25.0%
! CAAAAAGAATTAATGTGTTC+TGG - chr1_1:7541014-7541033 Msa0005070:intron 25.0%
!! ACATATATGCTCTAAATCTA+TGG + chr1_1:7541140-7541159 None:intergenic 25.0%
! ATATGCACTAAACAATCATA+AGG + chr1_1:7541189-7541208 None:intergenic 25.0%
! ATAATTGCTTCAGTTGTAAA+AGG - chr1_1:7541445-7541464 Msa0005070:CDS 25.0%
! ACTTGAATTCATCCATTTAT+AGG - chr1_1:7541570-7541589 Msa0005070:intron 25.0%
! ATAGCTTGAAATATAGCTTA+AGG + chr1_1:7541994-7542013 None:intergenic 25.0%
! TCAAATATCAGAATCGATAA+AGG + chr1_1:7542178-7542197 None:intergenic 25.0%
! CTATATTTCAAGCTTGAAAT+TGG + chr1_1:7542230-7542249 None:intergenic 25.0%
! TCAAATATCAGAATCGATAA+AGG + chr1_1:7542178-7542197 None:intergenic 25.0%
! TCTGATATTTGATTCATTTC+AGG - chr1_1:7542186-7542205 Msa0005070:intron 25.0%
! CTGATATTTGATTCATTTCA+GGG - chr1_1:7542187-7542206 Msa0005070:intron 25.0%
! TTTGCTTAAAGATAAGTTAG+TGG - chr1_1:7542442-7542461 Msa0005070:intron 25.0%
!! GTTTTGATCATCGTTTTCTT+CGG + chr1_1:7533758-7533777 None:intergenic 30.0%
TTTAATTACAGTGCCTGAAT+CGG - chr1_1:7533918-7533937 Msa0005070:intron 30.0%
ATTAGAAGCTAATCCAGAAT+AGG - chr1_1:7534108-7534127 Msa0005070:intron 30.0%
AGACTTTAATGGCATAATTG+AGG - chr1_1:7534153-7534172 Msa0005070:intron 30.0%
AATTCCTCTATAGTCTTTCT+AGG + chr1_1:7534429-7534448 None:intergenic 30.0%
ATTTACAACTACAACCAAGT+CGG + chr1_1:7534550-7534569 None:intergenic 30.0%
GATATGTCGAATGTGTAAAT+GGG - chr1_1:7534738-7534757 Msa0005070:CDS 30.0%
ATATGTCGAATGTGTAAATG+GGG - chr1_1:7534739-7534758 Msa0005070:CDS 30.0%
AATGCAATATACAAGTACCA+TGG + chr1_1:7534808-7534827 None:intergenic 30.0%
TGCATTTCATAACTTCTCTA+AGG - chr1_1:7534822-7534841 Msa0005070:intron 30.0%
GCATTTCATAACTTCTCTAA+GGG - chr1_1:7534823-7534842 Msa0005070:intron 30.0%
CTTTCGATCAATTAACATTG+GGG + chr1_1:7535073-7535092 None:intergenic 30.0%
CCTTTCGATCAATTAACATT+GGG + chr1_1:7535074-7535093 None:intergenic 30.0%
ACCTTTCGATCAATTAACAT+TGG + chr1_1:7535075-7535094 None:intergenic 30.0%
! AAAATTGCTGCTCTTCTTTT+TGG - chr1_1:7535658-7535677 Msa0005070:CDS 30.0%
AAGAAATGCTGTTAAGTGTT+AGG + chr1_1:7535749-7535768 None:intergenic 30.0%
TATAGAAAGTAGGGTAATCA+AGG + chr1_1:7535956-7535975 None:intergenic 30.0%
CAAGCATGTATATAGAAAGT+AGG + chr1_1:7535966-7535985 None:intergenic 30.0%
TTTCTATTTATGTGCATGTG+TGG - chr1_1:7536037-7536056 Msa0005070:intron 30.0%
TGATCCAAAGATTTCTTGAT+TGG + chr1_1:7536182-7536201 None:intergenic 30.0%
TGTAGTGTATGTTTGGATTT+CGG - chr1_1:7536202-7536221 Msa0005070:intron 30.0%
GCAATAATTGAGTTTCTATG+GGG + chr1_1:7536261-7536280 None:intergenic 30.0%
! TACATGCATGTTTGGTTTAT+AGG + chr1_1:7536331-7536350 None:intergenic 30.0%
CTTTCAAATTTGTCATGCTT+GGG + chr1_1:7536589-7536608 None:intergenic 30.0%
TCTTTCAAATTTGTCATGCT+TGG + chr1_1:7536590-7536609 None:intergenic 30.0%
CCAGAAAGAAAATGAGAAAA+AGG + chr1_1:7536668-7536687 None:intergenic 30.0%
! CCTTTTTCTCATTTTCTTTC+TGG - chr1_1:7536665-7536684 Msa0005070:intron 30.0%
TTAACGAAGAGAACAGAAAA+CGG - chr1_1:7536703-7536722 Msa0005070:intron 30.0%
ACTGAAAATAGAACTAGAAG+AGG - chr1_1:7536777-7536796 Msa0005070:intron 30.0%
AACTAGATAGAAATCTGGTA+GGG + chr1_1:7536886-7536905 None:intergenic 30.0%
AAGAGAACTAGATAGAAATC+TGG + chr1_1:7536891-7536910 None:intergenic 30.0%
AAATTGAAGGTGACATAGAT+GGG - chr1_1:7536944-7536963 Msa0005070:intron 30.0%
TTAAATATCTTGTGCATCAG+TGG - chr1_1:7537174-7537193 Msa0005070:intron 30.0%
! TATGCAATTTTGCAGTTATG+TGG - chr1_1:7537237-7537256 Msa0005070:intron 30.0%
!!! TTCTTCACTTTTTCTTGTTC+AGG - chr1_1:7537408-7537427 Msa0005070:intron 30.0%
! GACAAAGTACCTGTAAAATA+AGG + chr1_1:7537498-7537517 None:intergenic 30.0%
! GAGGTATTTATTGTCCATAT+TGG + chr1_1:7537541-7537560 None:intergenic 30.0%
! CTTAATATAGCATTTGTTGG+AGG + chr1_1:7537560-7537579 None:intergenic 30.0%
AAACTACGAGAATATGTTCA+TGG + chr1_1:7537745-7537764 None:intergenic 30.0%
!! ACTTGTCTCCATTTTTCTTT+GGG + chr1_1:7537788-7537807 None:intergenic 30.0%
!! AACTTGTCTCCATTTTTCTT+TGG + chr1_1:7537789-7537808 None:intergenic 30.0%
TATTTGTGTTGCAATAGCAA+AGG - chr1_1:7537906-7537925 Msa0005070:intron 30.0%
TTGCAATAGCAAAGGTTAAA+AGG - chr1_1:7537914-7537933 Msa0005070:intron 30.0%
! ACATAAATTTGCGGTCATTT+TGG + chr1_1:7537968-7537987 None:intergenic 30.0%
CTTGAGAAGAGTTTATAAAG+AGG - chr1_1:7538038-7538057 Msa0005070:intron 30.0%
TGTAGCTAGTAAATGAAATG+AGG - chr1_1:7538276-7538295 Msa0005070:intron 30.0%
GTAGCTAGTAAATGAAATGA+GGG - chr1_1:7538277-7538296 Msa0005070:intron 30.0%
TGTAGCTAGTAAATGAAATG+AGG - chr1_1:7538276-7538295 Msa0005070:intron 30.0%
TGTAGCTAGTAAATGAAATG+AGG - chr1_1:7538276-7538295 Msa0005070:intron 30.0%
GTAGCTAGTAAATGAAATGA+GGG - chr1_1:7538277-7538296 Msa0005070:intron 30.0%
!!! TTTTTGTCTGACTGTTTTTG+TGG - chr1_1:7540203-7540222 Msa0005070:intron 30.0%
! GCCTTTTGTACCAATTTTTT+TGG - chr1_1:7540510-7540529 Msa0005070:CDS 30.0%
GCCAAAAAAATTGGTACAAA+AGG + chr1_1:7540514-7540533 None:intergenic 30.0%
GTAAGTGCAATAAGCTAAAA+AGG + chr1_1:7540628-7540647 None:intergenic 30.0%
! GTAAGATATTTTACAGGATG+TGG - chr1_1:7540761-7540780 Msa0005070:CDS 30.0%
!! TTACCGTTAGTCTTTCAATA+AGG + chr1_1:7540944-7540963 None:intergenic 30.0%
ACTGATACTACTTAAAAAGG+CGG + chr1_1:7540991-7541010 None:intergenic 30.0%
AATTCAGAAAAAATGACCAG+TGG + chr1_1:7541071-7541090 None:intergenic 30.0%
! TTTTCTGAATTCTTCGAATG+TGG - chr1_1:7541080-7541099 Msa0005070:intron 30.0%
ATGCTACCAAAATATCAACA+TGG + chr1_1:7541393-7541412 None:intergenic 30.0%
!!! TGTTGATATTTTGGTAGCAT+CGG - chr1_1:7541393-7541412 Msa0005070:intron 30.0%
GAATTCATCCATTTATAGGT+AGG - chr1_1:7541574-7541593 Msa0005070:intron 30.0%
TTCAAATCTTCATCTAGTTG+AGG - chr1_1:7541648-7541667 Msa0005070:intron 30.0%
!!! ATTATGGCTTTTGGTAATGA+TGG - chr1_1:7541679-7541698 Msa0005070:intron 30.0%
! TTTTATGCAACAAGAACTTC+TGG + chr1_1:7541754-7541773 None:intergenic 30.0%
GAAGTTCTTGTTGCATAAAA+TGG - chr1_1:7541754-7541773 Msa0005070:intron 30.0%
TGACTTATTAGCTCATTAGT+TGG - chr1_1:7541820-7541839 Msa0005070:intron 30.0%
TGACTTATTAGCTCATTAGT+TGG + chr1_1:7541820-7541839 None:intergenic 30.0%
! TAAAGATAAGTTAGTGGACA+AGG - chr1_1:7542448-7542467 Msa0005070:intron 30.0%
!!! CACATTTTTTCAAACCAAAC+AGG + chr1_1:7542546-7542565 None:intergenic 30.0%
AATGGAAATAACCAAATGAC+AGG + chr1_1:7542736-7542755 None:intergenic 30.0%
AAACGAAAGAATCACACAAA+TGG + chr1_1:7542754-7542773 None:intergenic 30.0%
! TTTGTTGTCTAAGCATAGAT+TGG - chr1_1:7542797-7542816 Msa0005070:CDS 30.0%
ATTAACAATCATGAGCTTCT+TGG + chr1_1:7542880-7542899 None:intergenic 30.0%
AAATAATGACGCGCAAAAAT+TGG + chr1_1:7542926-7542945 None:intergenic 30.0%
TGGTAATTGTTACAACCACT+TGG - chr1_1:7533546-7533565 Msa0005070:intron 35.0%
! GTTGATGAGTTGGATTTGAT+CGG + chr1_1:7533644-7533663 None:intergenic 35.0%
! AAGAGCACGATCAATGATAT+CGG + chr1_1:7533722-7533741 None:intergenic 35.0%
AACGATGATCAAAACCAACA+AGG - chr1_1:7533763-7533782 Msa0005070:intron 35.0%
TTAATTACAGTGCCTGAATC+GGG - chr1_1:7533919-7533938 Msa0005070:intron 35.0%
TCTCTGACTAATACCTATTC+TGG + chr1_1:7534124-7534143 None:intergenic 35.0%
AAAGAACCAACACGAAAAGA+TGG - chr1_1:7534254-7534273 Msa0005070:intron 35.0%
AGCCACTATAGTAGAAAAGA+TGG - chr1_1:7534362-7534381 Msa0005070:intron 35.0%
! CACCATCTTTTCTACTATAG+TGG + chr1_1:7534367-7534386 None:intergenic 35.0%
CACTATAGTAGAAAAGATGG+TGG - chr1_1:7534365-7534384 Msa0005070:intron 35.0%
!! AGAAAAGATGGTGGAAACTA+AGG - chr1_1:7534374-7534393 Msa0005070:intron 35.0%
AAGACCTAGAAAGACTATAG+AGG - chr1_1:7534422-7534441 Msa0005070:intron 35.0%
GGAAACATCAAATAAGGTGA+AGG + chr1_1:7534582-7534601 None:intergenic 35.0%
! GCAGACAAAGAATCTGATTT+TGG + chr1_1:7534632-7534651 None:intergenic 35.0%
ATGTGTTGAATGTGTGAATG+CGG + chr1_1:7534664-7534683 None:intergenic 35.0%
TTACACATTCGACATATCCA+CGG + chr1_1:7534736-7534755 None:intergenic 35.0%
GGATATGTCGAATGTGTAAA+TGG - chr1_1:7534737-7534756 Msa0005070:CDS 35.0%
CCCAATGTTAATTGATCGAA+AGG - chr1_1:7535071-7535090 Msa0005070:intron 35.0%
GTGTAAATTGTGCATCTTTC+AGG - chr1_1:7535160-7535179 Msa0005070:intron 35.0%
! CTTGGTAGTTGCTATTGTTT+CGG - chr1_1:7535346-7535365 Msa0005070:intron 35.0%
TTCTTGACAAACGCAATCTT+AGG - chr1_1:7535437-7535456 Msa0005070:intron 35.0%
!! TCCTGAAAGTATTATATGGC+AGG - chr1_1:7535507-7535526 Msa0005070:intron 35.0%
ACCTGCCATATAATACTTTC+AGG + chr1_1:7535511-7535530 None:intergenic 35.0%
ATTATATGGCAGGTCATTAC+TGG - chr1_1:7535517-7535536 Msa0005070:intron 35.0%
ATTACTGGATATCTTCTAGC+TGG - chr1_1:7535532-7535551 Msa0005070:intron 35.0%
ATTGATGAAGTTAAAGCCTC+CGG + chr1_1:7535572-7535591 None:intergenic 35.0%
!!! TTTTTAGAGTTCAGCTCAGT+TGG - chr1_1:7535685-7535704 Msa0005070:intron 35.0%
AAATAAGCCAACCTTTGTCA+TGG + chr1_1:7535875-7535894 None:intergenic 35.0%
!! CATGTGTGGTTTTACTGTAT+CGG - chr1_1:7536051-7536070 Msa0005070:CDS 35.0%
CAAGCCAATCAAGAAATCTT+TGG - chr1_1:7536175-7536194 Msa0005070:intron 35.0%
TGGATCATGTAGTGTATGTT+TGG - chr1_1:7536195-7536214 Msa0005070:intron 35.0%
TTCGGTTGCAAATGTATGTT+TGG - chr1_1:7536220-7536239 Msa0005070:intron 35.0%
AAGACAACTACATGCATGTT+TGG + chr1_1:7536339-7536358 None:intergenic 35.0%
! GTTTTCTGTTCTCTTCGTTA+AGG + chr1_1:7536704-7536723 None:intergenic 35.0%
AATTCTGTGATAGCAAGGTT+TGG + chr1_1:7536850-7536869 None:intergenic 35.0%
GAACTAGATAGAAATCTGGT+AGG + chr1_1:7536887-7536906 None:intergenic 35.0%
AGGGTGTAGAATATATCTAC+AGG + chr1_1:7536914-7536933 None:intergenic 35.0%
CAAATTGAAGGTGACATAGA+TGG - chr1_1:7536943-7536962 Msa0005070:intron 35.0%
AATTGAAGGTGACATAGATG+GGG - chr1_1:7536945-7536964 Msa0005070:intron 35.0%
GTAGCATTCGAAATGTCATA+TGG + chr1_1:7537206-7537225 None:intergenic 35.0%
!! GACAGTGTGTGCTTTAAAAA+TGG + chr1_1:7537354-7537373 None:intergenic 35.0%
! TCAGGTCTTGAAGTTTTTGA+TGG - chr1_1:7537426-7537445 Msa0005070:intron 35.0%
! AATTGTGACTTGTCCATGAA+GGG + chr1_1:7537470-7537489 None:intergenic 35.0%
TTCATGGACAAGTCACAATT+GGG - chr1_1:7537470-7537489 Msa0005070:intron 35.0%
!!! AATTGGGACCCTTATTTTAC+AGG - chr1_1:7537486-7537505 Msa0005070:intron 35.0%
TGACCGCAAATTTATGTTAG+CGG - chr1_1:7537971-7537990 Msa0005070:intron 35.0%
GAGAAGAGTTTATAAAGAGG+AGG - chr1_1:7538041-7538060 Msa0005070:intron 35.0%
CTAACTCATCCTTACAAAAC+TGG + chr1_1:7538085-7538104 None:intergenic 35.0%
TGTAAACTGTCACAATATCG+AGG + chr1_1:7538109-7538128 None:intergenic 35.0%
TACACTCTTGAAAAGACTCT+TGG - chr1_1:7538125-7538144 Msa0005070:intron 35.0%
GGTGCTTGTAAATGAAATGA+GGG - chr1_1:7538298-7538317 Msa0005070:intron 35.0%
GGTGCTTGTAAATGAAATGA+GGG - chr1_1:7538298-7538317 Msa0005070:intron 35.0%
GGTGCTTGTAAATGAAATGA+GGG - chr1_1:7538298-7538317 Msa0005070:intron 35.0%
GGTGCTTGTAAATGAAATGA+GGG - chr1_1:7538298-7538317 Msa0005070:intron 35.0%
AACACACATATCAAGGAAAG+TGG + chr1_1:7539711-7539730 None:intergenic 35.0%
GTCACTTAACACACATATCA+AGG + chr1_1:7539718-7539737 None:intergenic 35.0%
CTCAGCATATGCTATATACT+CGG + chr1_1:7539905-7539924 None:intergenic 35.0%
TGATACTCCTTTCTTAATCC+AGG - chr1_1:7539951-7539970 Msa0005070:intron 35.0%
ATCATCAGTTTAAGCAACCA+CGG + chr1_1:7540034-7540053 None:intergenic 35.0%
TGATAAAATACCCATGGAAG+AGG - chr1_1:7540094-7540113 Msa0005070:intron 35.0%
TAATGTCATACAACAATGGC+AGG - chr1_1:7540130-7540149 Msa0005070:intron 35.0%
AATGTCATACAACAATGGCA+GGG - chr1_1:7540131-7540150 Msa0005070:intron 35.0%
!!! TGCTTCACCTTATTTTCAGA+GGG - chr1_1:7540412-7540431 Msa0005070:intron 35.0%
CTTACTTGTTCTAGTGTATG+TGG + chr1_1:7540746-7540765 None:intergenic 35.0%
CCACCTTATTGAAAGACTAA+CGG - chr1_1:7540938-7540957 Msa0005070:intron 35.0%
! GATTTTCCTTCTTTACAAGC+TGG - chr1_1:7541161-7541180 Msa0005070:intron 35.0%
TGATTCATGTTCATTTCCTC+TGG - chr1_1:7541365-7541384 Msa0005070:intron 35.0%
AAATATCAACATGGTTCCAG+AGG + chr1_1:7541384-7541403 None:intergenic 35.0%
! CTGGAACCATGTTGATATTT+TGG - chr1_1:7541384-7541403 Msa0005070:intron 35.0%
!!! TTTGGTAGCATCGGTTATTT+TGG - chr1_1:7541402-7541421 Msa0005070:intron 35.0%
GCTTCAGTTGTAAAAGGATT+TGG - chr1_1:7541451-7541470 Msa0005070:CDS 35.0%
TGGACATTCCTACCTATAAA+TGG + chr1_1:7541585-7541604 None:intergenic 35.0%
TTTATAGGTAGGAATGTCCA+TGG - chr1_1:7541585-7541604 Msa0005070:intron 35.0%
AGTTGAGGTTAGTGACATTA+TGG - chr1_1:7541663-7541682 Msa0005070:intron 35.0%
! GTTAGTGACATTATGGCTTT+TGG - chr1_1:7541670-7541689 Msa0005070:intron 35.0%
ATATCAGAATCGATAAAGGC+TGG + chr1_1:7542174-7542193 None:intergenic 35.0%
ATATCAGAATCGATAAAGGC+TGG + chr1_1:7542174-7542193 None:intergenic 35.0%
ATGCGTTCAGAAATTACTCA+GGG + chr1_1:7542608-7542627 None:intergenic 35.0%
AATGCGTTCAGAAATTACTC+AGG + chr1_1:7542609-7542628 None:intergenic 35.0%
GGAATCAGCTTGAAAAGTAA+AGG + chr1_1:7542648-7542667 None:intergenic 35.0%
CTAAGCATAGATTGGATACA+AGG - chr1_1:7542805-7542824 Msa0005070:CDS 35.0%
CGCAAAAATTGGAAATTCCT+TGG + chr1_1:7542915-7542934 None:intergenic 35.0%
! TGAGCAAGTTGAAATGGTGA+GGG + chr1_1:7533447-7533466 None:intergenic 40.0%
! GAGTAGTGAGCAAGTTGAAA+TGG + chr1_1:7533453-7533472 None:intergenic 40.0%
!! TTGTTACAACCACTTGGTGT+TGG - chr1_1:7533552-7533571 Msa0005070:intron 40.0%
AGGAATGAGGTAGAAGAAGA+AGG + chr1_1:7533594-7533613 None:intergenic 40.0%
!! AAAGATGGTGGATGTTGTGT+TGG - chr1_1:7534269-7534288 Msa0005070:intron 40.0%
! TTTTATCCATGTAGCCGACT+TGG - chr1_1:7534533-7534552 Msa0005070:intron 40.0%
TCACACATTCAACACATCTG+CGG - chr1_1:7534667-7534686 Msa0005070:intron 40.0%
! TGGGGCAAATTTTAGACTAC+AGG - chr1_1:7534757-7534776 Msa0005070:intron 40.0%
! GGGGCAAATTTTAGACTACA+GGG - chr1_1:7534758-7534777 Msa0005070:intron 40.0%
TACCATGGATGCATATTCAC+CGG + chr1_1:7534793-7534812 None:intergenic 40.0%
TAGTCCTCTTTCCTTGAATC+AGG - chr1_1:7534862-7534881 Msa0005070:CDS 40.0%
!!! ATTTTTGTTCGGTGTGACTC+TGG + chr1_1:7534906-7534925 None:intergenic 40.0%
AGGTCATTTCAACTCCATAG+AGG - chr1_1:7535039-7535058 Msa0005070:intron 40.0%
TTGATGAAGTTAAAGCCTCC+GGG + chr1_1:7535571-7535590 None:intergenic 40.0%
CTTCATCAATGAAATGGTGC+AGG - chr1_1:7535582-7535601 Msa0005070:intron 40.0%
AATGAAATGGTGCAGGTATC+TGG - chr1_1:7535589-7535608 Msa0005070:intron 40.0%
ATGCAAGCCTGAATGAACTT+AGG - chr1_1:7535789-7535808 Msa0005070:intron 40.0%
GTTTCCACCTAAGTTCATTC+AGG + chr1_1:7535799-7535818 None:intergenic 40.0%
ATGAACTTAGGTGGAAACAG+TGG - chr1_1:7535801-7535820 Msa0005070:intron 40.0%
! TATTCTTTTTGCATTGGGCC+TGG - chr1_1:7535843-7535862 Msa0005070:intron 40.0%
! GAGTTTTCCATGACAAAGGT+TGG - chr1_1:7535865-7535884 Msa0005070:intron 40.0%
TTCTATGGGGCATACATACT+TGG + chr1_1:7536248-7536267 None:intergenic 40.0%
CAAGTCAGACTAATCTCACA+TGG + chr1_1:7536382-7536401 None:intergenic 40.0%
!! CATGTGAGATTAGTCTGACT+TGG - chr1_1:7536380-7536399 Msa0005070:intron 40.0%
AGTGGAATTCTGTGATAGCA+AGG + chr1_1:7536855-7536874 None:intergenic 40.0%
AGATAGAAATCTGGTAGGGA+TGG + chr1_1:7536882-7536901 None:intergenic 40.0%
ATTGAAGGTGACATAGATGG+GGG - chr1_1:7536946-7536965 Msa0005070:intron 40.0%
! GCAATTTTGCAGTTATGTGG+TGG - chr1_1:7537240-7537259 Msa0005070:intron 40.0%
! GCTTCAGAAGGGATTTTTGT+TGG - chr1_1:7537267-7537286 Msa0005070:intron 40.0%
CTGCTGTTGAAGACATAGAA+AGG + chr1_1:7537299-7537318 None:intergenic 40.0%
TTCTATGTCTTCAACAGCAG+TGG - chr1_1:7537299-7537318 Msa0005070:intron 40.0%
TGTCTAATGTACTTCCTTGC+CGG - chr1_1:7537370-7537389 Msa0005070:intron 40.0%
CAGAAAAGTTATTACCGGCA+AGG + chr1_1:7537387-7537406 None:intergenic 40.0%
AACACTACTAATGCCCTTCA+TGG - chr1_1:7537454-7537473 Msa0005070:intron 40.0%
! CAATTGTGACTTGTCCATGA+AGG + chr1_1:7537471-7537490 None:intergenic 40.0%
CTTCATGGACAAGTCACAAT+TGG - chr1_1:7537469-7537488 Msa0005070:intron 40.0%
! TTTGCATTGCTCCCAGTTTT+GGG - chr1_1:7537628-7537647 Msa0005070:intron 40.0%
TGGCCGCTAACATAAATTTG+CGG + chr1_1:7537977-7537996 None:intergenic 40.0%
GAATCCTATCTATCCGATGT+GGG + chr1_1:7538019-7538038 None:intergenic 40.0%
AGAATCCTATCTATCCGATG+TGG + chr1_1:7538020-7538039 None:intergenic 40.0%
!! CCTTACAAAACTGGCTTGTA+TGG + chr1_1:7538076-7538095 None:intergenic 40.0%
!! CCATACAAGCCAGTTTTGTA+AGG - chr1_1:7538073-7538092 Msa0005070:intron 40.0%
GGGTGCTTGTAAATGAAATG+AGG - chr1_1:7538297-7538316 Msa0005070:intron 40.0%
GGGTGCTTGTAAATGAAATG+AGG - chr1_1:7538297-7538316 Msa0005070:intron 40.0%
GGGTGCTTGTAAATGAAATG+AGG - chr1_1:7538297-7538316 Msa0005070:intron 40.0%
GGGTGCTTGTAAATGAAATG+AGG - chr1_1:7538297-7538316 Msa0005070:intron 40.0%
CTGGACTCACAATATTAGTG+AGG + chr1_1:7539669-7539688 None:intergenic 40.0%
ACTCCTTTCTTAATCCAGGT+TGG - chr1_1:7539955-7539974 Msa0005070:intron 40.0%
TCACCAACCTGGATTAAGAA+AGG + chr1_1:7539961-7539980 None:intergenic 40.0%
GATGATAAGTCTATCGTCAC+AGG - chr1_1:7540048-7540067 Msa0005070:intron 40.0%
AAACAAGCAACCTCTTCCAT+GGG + chr1_1:7540107-7540126 None:intergenic 40.0%
AAAACAAGCAACCTCTTCCA+TGG + chr1_1:7540108-7540127 None:intergenic 40.0%
ATGTCATACAACAATGGCAG+GGG - chr1_1:7540132-7540151 Msa0005070:intron 40.0%
TTCATTTGTCTGCACGAACA+TGG + chr1_1:7540240-7540259 None:intergenic 40.0%
GACAAATGAACTCTATCAGC+TGG - chr1_1:7540250-7540269 Msa0005070:intron 40.0%
ATAAGGAAGAGAACAAACCC+AGG + chr1_1:7540303-7540322 None:intergenic 40.0%
!!! GTGCTTCACCTTATTTTCAG+AGG - chr1_1:7540411-7540430 Msa0005070:intron 40.0%
! TTTTCAGTGTAGCGATAAGC+TGG - chr1_1:7540658-7540677 Msa0005070:intron 40.0%
TTTCAGTGTAGCGATAAGCT+GGG - chr1_1:7540659-7540678 Msa0005070:intron 40.0%
! CTGGGATTAAGTCTAGAACT+AGG - chr1_1:7540677-7540696 Msa0005070:intron 40.0%
AAATGCATGTAGTGTGAGCA+TGG - chr1_1:7540785-7540804 Msa0005070:CDS 40.0%
!! CCGTTAGTCTTTCAATAAGG+TGG + chr1_1:7540941-7540960 None:intergenic 40.0%
GAAAGACTAACGGTAATGAG+TGG - chr1_1:7540948-7540967 Msa0005070:CDS 40.0%
! AAATGACCAGTGGAAGTACA+TGG + chr1_1:7541061-7541080 None:intergenic 40.0%
GCAGCGAAAAGATTGCAAAT+GGG + chr1_1:7541319-7541338 None:intergenic 40.0%
TGCAGCGAAAAGATTGCAAA+TGG + chr1_1:7541320-7541339 None:intergenic 40.0%
! GCACTTTTCCTTTCAAGCAT+TGG - chr1_1:7541337-7541356 Msa0005070:intron 40.0%
TCAGCATTCCAATGCTTGAA+AGG + chr1_1:7541348-7541367 None:intergenic 40.0%
AAATTCTCCTATCTGTGCCA+TGG + chr1_1:7541605-7541624 None:intergenic 40.0%
!! CTCAGACTTGTTGCATTGAA+TGG - chr1_1:7541790-7541809 Msa0005070:intron 40.0%
! AAGCTATATCTGCTGCTTCT+TGG - chr1_1:7542322-7542341 Msa0005070:intron 40.0%
! AGCTATATCTGCTGCTTCTT+GGG - chr1_1:7542323-7542342 Msa0005070:intron 40.0%
TAGAAAGCTGTATAGACCAG+AGG + chr1_1:7542418-7542437 None:intergenic 40.0%
! ACTGTCGTATGGGAGTATAT+GGG + chr1_1:7542502-7542521 None:intergenic 40.0%
ATTTCTGAACGCATTTCTGC+AGG - chr1_1:7542614-7542633 Msa0005070:CDS 40.0%
AGAGGTAATCACCTGTCATT+TGG - chr1_1:7542722-7542741 Msa0005070:CDS 40.0%
TTAATCATTGCACTGCACCA+AGG - chr1_1:7542895-7542914 Msa0005070:CDS 40.0%
!! CGCGTCATTATTTTTCGACA+GGG - chr1_1:7542933-7542952 Msa0005070:five_prime_UTR 40.0%
! GAGCAAGTTGAAATGGTGAG+GGG + chr1_1:7533446-7533465 None:intergenic 45.0%
! GTGAGCAAGTTGAAATGGTG+AGG + chr1_1:7533448-7533467 None:intergenic 45.0%
AGTTGGCAGTTACAGTTCAC+CGG + chr1_1:7533484-7533503 None:intergenic 45.0%
!! TTACAACCACTTGGTGTTGG+TGG - chr1_1:7533555-7533574 Msa0005070:intron 45.0%
ACGATCAATGATATCGGCGA+AGG + chr1_1:7533716-7533735 None:intergenic 45.0%
TTGTTGAAACCTCCCGATTC+AGG + chr1_1:7533934-7533953 None:intergenic 45.0%
CAACAGTGTTGCAGAACAAC+AGG - chr1_1:7533951-7533970 Msa0005070:intron 45.0%
TTAGCCTGTCAGACTGACAA+TGG - chr1_1:7534206-7534225 Msa0005070:intron 45.0%
TACACCATTGTCAGTCTGAC+AGG + chr1_1:7534213-7534232 None:intergenic 45.0%
TTACTGCCTAACACTCTGTC+TGG + chr1_1:7534236-7534255 None:intergenic 45.0%
GAACCAACACGAAAAGATGG+TGG - chr1_1:7534257-7534276 Msa0005070:intron 45.0%
! CATCCACCATCTTTTCGTGT+TGG + chr1_1:7534263-7534282 None:intergenic 45.0%
TGGATGTTGTGTTGGATGTG+TGG - chr1_1:7534277-7534296 Msa0005070:intron 45.0%
ATTAGAGAGAGACAGAGAGC+TGG - chr1_1:7534334-7534353 Msa0005070:intron 45.0%
TTAGAGAGAGACAGAGAGCT+GGG - chr1_1:7534335-7534354 Msa0005070:intron 45.0%
!! AGATGGTGGAAACTAAGGTC+AGG - chr1_1:7534379-7534398 Msa0005070:intron 45.0%
CGGTCTCCAAGCTTGAAATA+TGG - chr1_1:7534687-7534706 Msa0005070:CDS 45.0%
GACGGTCCATATTTCAAGCT+TGG + chr1_1:7534696-7534715 None:intergenic 45.0%
! GTTGCTGGATTTAGTTCGGA+CGG + chr1_1:7534714-7534733 None:intergenic 45.0%
CACGGTTGCTGGATTTAGTT+CGG + chr1_1:7534718-7534737 None:intergenic 45.0%
! TTTTAGACTACAGGGAACCC+TGG - chr1_1:7534766-7534785 Msa0005070:intron 45.0%
ACAGCCTGATTCAAGGAAAG+AGG + chr1_1:7534869-7534888 None:intergenic 45.0%
TTCCTTGAATCAGGCTGTAC+TGG - chr1_1:7534871-7534890 Msa0005070:CDS 45.0%
GCTATTGTTTCGGCAACTTG+TGG - chr1_1:7535356-7535375 Msa0005070:intron 45.0%
ATTGTTTCGGCAACTTGTGG+TGG - chr1_1:7535359-7535378 Msa0005070:intron 45.0%
!! GTTTGCTTTTGCTGGACAAC+CGG - chr1_1:7535388-7535407 Msa0005070:intron 45.0%
! CTTCTAGCTGGCTCCATTAT+TGG - chr1_1:7535544-7535563 Msa0005070:intron 45.0%
CAAGCCTGAATGAACTTAGG+TGG - chr1_1:7535792-7535811 Msa0005070:intron 45.0%
GTGGAAACAGTGGCTCAATT+CGG - chr1_1:7535811-7535830 Msa0005070:intron 45.0%
CCTTTGTCATGGAAAACTCC+AGG + chr1_1:7535864-7535883 None:intergenic 45.0%
! CCTGGAGTTTTCCATGACAA+AGG - chr1_1:7535861-7535880 Msa0005070:intron 45.0%
! GTTCGATCTGTTGCTGTTCT+TGG - chr1_1:7535998-7536017 Msa0005070:intron 45.0%
!! GAGAGTGCCTGATTGAATGA+AGG - chr1_1:7536513-7536532 Msa0005070:intron 45.0%
GCACAGACCTTCATTCAATC+AGG + chr1_1:7536523-7536542 None:intergenic 45.0%
TCATGCTTGGGACAATCAAG+CGG + chr1_1:7536577-7536596 None:intergenic 45.0%
AGTTCAGCTCATGGAGAAGT+GGG + chr1_1:7536812-7536831 None:intergenic 45.0%
TAGTTCAGCTCATGGAGAAG+TGG + chr1_1:7536813-7536832 None:intergenic 45.0%
CTGTGTAGTAGTTCAGCTCA+TGG + chr1_1:7536821-7536840 None:intergenic 45.0%
TTGAAGGTGACATAGATGGG+GGG - chr1_1:7536947-7536966 Msa0005070:intron 45.0%
TGTGGTGGTAAAGCTTCAGA+AGG - chr1_1:7537255-7537274 Msa0005070:intron 45.0%
GTGGTGGTAAAGCTTCAGAA+GGG - chr1_1:7537256-7537275 Msa0005070:intron 45.0%
TCCTTGAAGGATTGTGCTGT+TGG - chr1_1:7537598-7537617 Msa0005070:intron 45.0%
TCCAACAGCACAATCCTTCA+AGG + chr1_1:7537602-7537621 None:intergenic 45.0%
! CTTTGCATTGCTCCCAGTTT+TGG - chr1_1:7537627-7537646 Msa0005070:intron 45.0%
CACTCCTTGAAAAACACCTG+AGG + chr1_1:7537659-7537678 None:intergenic 45.0%
CTCGCTGTCCCAAAGAAAAA+TGG - chr1_1:7537777-7537796 Msa0005070:intron 45.0%
GACTAAATTCCCTCGAGTGT+TGG + chr1_1:7537997-7538016 None:intergenic 45.0%
GAGGGAATTTAGTCCCACAT+CGG - chr1_1:7538003-7538022 Msa0005070:intron 45.0%
TAGTCCCACATCGGATAGAT+AGG - chr1_1:7538012-7538031 Msa0005070:intron 45.0%
! TGATTGCTAGTGTCACTGAC+AGG - chr1_1:7539091-7539110 Msa0005070:intron 45.0%
! GATTGCTAGTGTCACTGACA+GGG - chr1_1:7539092-7539111 Msa0005070:intron 45.0%
TGCAATCAATGTCACCAACC+TGG + chr1_1:7539972-7539991 None:intergenic 45.0%
TCAGTTTAAGCAACCACGGA+AGG + chr1_1:7540030-7540049 None:intergenic 45.0%
AATCTGCTTGCTTGTAGCCT+GGG - chr1_1:7540283-7540302 Msa0005070:CDS 45.0%
! GCTGAGACCCTCTGAAAATA+AGG + chr1_1:7540422-7540441 None:intergenic 45.0%
GTGCTTGACAAGTAACAGCA+AGG + chr1_1:7540603-7540622 None:intergenic 45.0%
AATCATCACTCCAGCAGCAA+AGG + chr1_1:7540705-7540724 None:intergenic 45.0%
GATGATTGCAACCACTGATC+TGG - chr1_1:7540718-7540737 Msa0005070:intron 45.0%
ATCCATCCATGTACTTCCAC+TGG - chr1_1:7541052-7541071 Msa0005070:intron 45.0%
! AAGGCACCAGCTTGTAAAGA+AGG + chr1_1:7541170-7541189 None:intergenic 45.0%
GAGGCAGCATGATCTTCTTT+AGG + chr1_1:7541730-7541749 None:intergenic 45.0%
TGCAACAAGAACTTCTGGTG+AGG + chr1_1:7541749-7541768 None:intergenic 45.0%
TCTTACCAGACTAAGAGCTG+TGG + chr1_1:7542350-7542369 None:intergenic 45.0%
TATAGACCAGAGGTCAGCAA+AGG + chr1_1:7542408-7542427 None:intergenic 45.0%
! CACTGTCGTATGGGAGTATA+TGG + chr1_1:7542503-7542522 None:intergenic 45.0%
ATTCCTGCTGTAGTGCATCT+TGG - chr1_1:7542663-7542682 Msa0005070:CDS 45.0%
! TGCATCTTGGTGTGCTATTG+AGG - chr1_1:7542676-7542695 Msa0005070:CDS 45.0%
! ATCTTGGTGTGCTATTGAGG+TGG - chr1_1:7542679-7542698 Msa0005070:CDS 45.0%
ATTACCTCTACTGCACTGTC+AGG + chr1_1:7542711-7542730 None:intergenic 45.0%
!! GCGCGTCATTATTTTTCGAC+AGG - chr1_1:7542932-7542951 Msa0005070:five_prime_UTR 45.0%
!! AACTTATATATTAATTAATA+CGG - chr1_1:7539381-7539400 Msa0005070:intron 5.0%
!! CAAAATATAAAATTTATTAA+CGG + chr1_1:7539764-7539783 None:intergenic 5.0%
GTTGAAATGGTGAGGGGTCA+AGG + chr1_1:7533440-7533459 None:intergenic 50.0%
ATGTGATCGGATAGCGAGTG+AGG + chr1_1:7533614-7533633 None:intergenic 50.0%
GATCGGAGTGAGCATGTGAT+CGG + chr1_1:7533627-7533646 None:intergenic 50.0%
!! CAGTGGTGGAGTTGATGAGT+TGG + chr1_1:7533654-7533673 None:intergenic 50.0%
GGAGATATTGGAGTCAGTGG+TGG + chr1_1:7533668-7533687 None:intergenic 50.0%
GAGGGAGATATTGGAGTCAG+TGG + chr1_1:7533671-7533690 None:intergenic 50.0%
! AGTGGTGGAGAGGGAGATAT+TGG + chr1_1:7533680-7533699 None:intergenic 50.0%
ATTACAGTGCCTGAATCGGG+AGG - chr1_1:7533922-7533941 Msa0005070:intron 50.0%
! GGTGTACCAGACAGAGTGTT+AGG - chr1_1:7534227-7534246 Msa0005070:intron 50.0%
TAGAGAGAGACAGAGAGCTG+GGG - chr1_1:7534336-7534355 Msa0005070:intron 50.0%
CTACAACCAAGTCGGCTACA+TGG + chr1_1:7534542-7534561 None:intergenic 50.0%
CGAACTAAATCCAGCAACCG+TGG - chr1_1:7534716-7534735 Msa0005070:CDS 50.0%
TTCGACATATCCACGGTTGC+TGG + chr1_1:7534729-7534748 None:intergenic 50.0%
GATGCATATTCACCGGACCA+GGG + chr1_1:7534786-7534805 None:intergenic 50.0%
GTCCGGTGAATATGCATCCA+TGG - chr1_1:7534788-7534807 Msa0005070:intron 50.0%
CTCCAGTACAGCCTGATTCA+AGG + chr1_1:7534876-7534895 None:intergenic 50.0%
! TTGGGGTGTCTTCACCTCTA+TGG + chr1_1:7535056-7535075 None:intergenic 50.0%
CGTAAATCTAGCTGCAGCAC+CGG + chr1_1:7535224-7535243 None:intergenic 50.0%
!! CGGTGCTGCAGCTAGATTTA+CGG - chr1_1:7535222-7535241 Msa0005070:intron 50.0%
AAAGCCTCCGGGTCCAATAA+TGG + chr1_1:7535560-7535579 None:intergenic 50.0%
! CGATCTGTTGCTGTTCTTGG+TGG - chr1_1:7536001-7536020 Msa0005070:intron 50.0%
CATGGCATGAATGTCTGCAG+AGG + chr1_1:7536364-7536383 None:intergenic 50.0%
GTGCTGTGATGTACTTGCAG+TGG - chr1_1:7536612-7536631 Msa0005070:intron 50.0%
! GGCACCTCAGGTGTTTTTCA+AGG - chr1_1:7537652-7537671 Msa0005070:intron 50.0%
!! CAAAACTGGCTTGTATGGCG+AGG + chr1_1:7538071-7538090 None:intergenic 50.0%
! TGACAGGGACGGATTTGAAC+TGG - chr1_1:7539107-7539126 Msa0005070:intron 50.0%
! GACAGGGACGGATTTGAACT+GGG - chr1_1:7539108-7539127 Msa0005070:intron 50.0%
GATTTGAACTGGGCATGGTG+TGG - chr1_1:7539118-7539137 Msa0005070:intron 50.0%
AGGAAAGTGGTCAGTGACCA+GGG + chr1_1:7539698-7539717 None:intergenic 50.0%
AAGGAAAGTGGTCAGTGACC+AGG + chr1_1:7539699-7539718 None:intergenic 50.0%
ATACAACAATGGCAGGGGTG+TGG - chr1_1:7540137-7540156 Msa0005070:intron 50.0%
CAATCTGCTTGCTTGTAGCC+TGG - chr1_1:7540282-7540301 Msa0005070:CDS 50.0%
GAACTAGGTTCCTTTGCTGC+TGG - chr1_1:7540692-7540711 Msa0005070:intron 50.0%
TGTATGTGGAGCCAGATCAG+TGG + chr1_1:7540732-7540751 None:intergenic 50.0%
! GACCAGTGGAAGTACATGGA+TGG + chr1_1:7541057-7541076 None:intergenic 50.0%
GGAATGTCCATGGCACAGAT+AGG - chr1_1:7541595-7541614 Msa0005070:intron 50.0%
TAGGTTCCTTTGCTGACCTC+TGG - chr1_1:7542399-7542418 Msa0005070:CDS 50.0%
ATACTCCCATACGACAGTGC+AGG - chr1_1:7542504-7542523 Msa0005070:intron 50.0%
GTGCATATGCATCGCCTGTT+TGG - chr1_1:7542529-7542548 Msa0005070:intron 50.0%
ACACCAAGATGCACTACAGC+AGG + chr1_1:7542669-7542688 None:intergenic 50.0%
TTCTCCTGACAGTGCAGTAG+AGG - chr1_1:7542704-7542723 Msa0005070:CDS 50.0%
GATAACCTCCGCTCAGATAG+TGG - chr1_1:7542830-7542849 Msa0005070:CDS 50.0%
AGTTACAGTTCACCGGCGAG+GGG + chr1_1:7533477-7533496 None:intergenic 55.0%
CAGTTACAGTTCACCGGCGA+GGG + chr1_1:7533478-7533497 None:intergenic 55.0%
TGCCAACTGCTAACCTTCGC+CGG - chr1_1:7533496-7533515 Msa0005070:CDS 55.0%
! TGGTGTTAACATTGCCGCGC+CGG + chr1_1:7533518-7533537 None:intergenic 55.0%
CTGTCACCACCAACACCAAG+TGG + chr1_1:7533564-7533583 None:intergenic 55.0%
CGGATAGCGAGTGAGGAATG+AGG + chr1_1:7533607-7533626 None:intergenic 55.0%
! TTGACGAGGAGTGGTGGAGA+GGG + chr1_1:7533689-7533708 None:intergenic 55.0%
GAAGGAACCTTGACGAGGAG+TGG + chr1_1:7533698-7533717 None:intergenic 55.0%
AGAGAGAGACAGAGAGCTGG+GGG - chr1_1:7534337-7534356 Msa0005070:intron 55.0%
GGATGCATATTCACCGGACC+AGG + chr1_1:7534787-7534806 None:intergenic 55.0%
! TAGCTGCAGCACCGGATACT+TGG + chr1_1:7535216-7535235 None:intergenic 55.0%
!! GGTGTCGCGTTTGCTTTTGC+TGG - chr1_1:7535380-7535399 Msa0005070:intron 55.0%
! GCTGGCTCCATTATTGGACC+CGG - chr1_1:7535550-7535569 Msa0005070:intron 55.0%
!!! GCATTGCTCCCAGTTTTGGG+TGG - chr1_1:7537631-7537650 Msa0005070:intron 55.0%
! CTGAGGTGCCACCCAAAACT+GGG + chr1_1:7537642-7537661 None:intergenic 55.0%
ATGTTAGCGGCCAACACTCG+AGG - chr1_1:7537984-7538003 Msa0005070:intron 55.0%
TGTTAGCGGCCAACACTCGA+GGG - chr1_1:7537985-7538004 Msa0005070:intron 55.0%
! GCTAGTGTCACTGACAGGGA+CGG - chr1_1:7539096-7539115 Msa0005070:intron 55.0%
! GGACGGATTTGAACTGGGCA+TGG - chr1_1:7539113-7539132 Msa0005070:intron 55.0%
GGAAAGTGGTCAGTGACCAG+GGG + chr1_1:7539697-7539716 None:intergenic 55.0%
TGGGACCACAGCTCTTAGTC+TGG - chr1_1:7542342-7542361 Msa0005070:intron 55.0%
CACTGCCTGCACTGTCGTAT+GGG + chr1_1:7542512-7542531 None:intergenic 55.0%
GCTGCTTGCCACTATCTGAG+CGG + chr1_1:7542841-7542860 None:intergenic 55.0%
GCAGTTACAGTTCACCGGCG+AGG + chr1_1:7533479-7533498 None:intergenic 60.0%
! CTTGACGAGGAGTGGTGGAG+AGG + chr1_1:7533690-7533709 None:intergenic 60.0%
CTCTCCACCACTCCTCGTCA+AGG - chr1_1:7533688-7533707 Msa0005070:CDS 60.0%
GGAACCTTGACGAGGAGTGG+TGG + chr1_1:7533695-7533714 None:intergenic 60.0%
TCGGCGAAGGAACCTTGACG+AGG + chr1_1:7533703-7533722 None:intergenic 60.0%
GAGAGAGACAGAGAGCTGGG+GGG - chr1_1:7534338-7534357 Msa0005070:intron 60.0%
GACTACAGGGAACCCTGGTC+CGG - chr1_1:7534771-7534790 Msa0005070:intron 60.0%
GGCTCCATTATTGGACCCGG+AGG - chr1_1:7535553-7535572 Msa0005070:intron 60.0%
TCTGGTAGGGATGGCGTGAG+TGG + chr1_1:7536873-7536892 None:intergenic 60.0%
! CCTGAGGTGCCACCCAAAAC+TGG + chr1_1:7537643-7537662 None:intergenic 60.0%
!!! CCAGTTTTGGGTGGCACCTC+AGG - chr1_1:7537640-7537659 Msa0005070:intron 60.0%
AAGTGGTCAGTGACCAGGGG+CGG + chr1_1:7539694-7539713 None:intergenic 60.0%
TGTCTCGCACTTGCCTTCCG+TGG - chr1_1:7540014-7540033 Msa0005070:intron 60.0%
GCACTGCCTGCACTGTCGTA+TGG + chr1_1:7542513-7542532 None:intergenic 60.0%
GCTTGCCACTATCTGAGCGG+AGG + chr1_1:7542838-7542857 None:intergenic 60.0%
GCTCACTACTCTCCCCTCGC+CGG - chr1_1:7533462-7533481 Msa0005070:CDS 65.0%
CGCCGGCGAAGGTTAGCAGT+TGG + chr1_1:7533501-7533520 None:intergenic 65.0%
ACTGCTAACCTTCGCCGGCG+CGG - chr1_1:7533501-7533520 Msa0005070:CDS 65.0%
! TAACATTGCCGCGCCGGCGA+AGG + chr1_1:7533512-7533531 None:intergenic 65.0%
TGTGAGTCCAGATCCGCCCC+TGG - chr1_1:7539678-7539697 Msa0005070:intron 65.0%
TCAGTGACCAGGGGCGGATC+TGG + chr1_1:7539688-7539707 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7533393 7542961 7533393 ID=Msa0005070;Name=Msa0005070
chr1_1 mRNA 7533393 7542961 7533393 ID=Msa0005070-mRNA-1;Parent=Msa0005070;Name=Msa0005070-mRNA-1;_AED=0.14;_eAED=0.14;_QI=31|0.94|0.95|1|0.94|0.95|20|63|617
chr1_1 exon 7533393 7533539 7533393 ID=Msa0005070-mRNA-1:exon:2700;Parent=Msa0005070-mRNA-1
chr1_1 exon 7533629 7533718 7533629 ID=Msa0005070-mRNA-1:exon:2699;Parent=Msa0005070-mRNA-1
chr1_1 exon 7533991 7534035 7533991 ID=Msa0005070-mRNA-1:exon:2698;Parent=Msa0005070-mRNA-1
chr1_1 exon 7534685 7534762 7534685 ID=Msa0005070-mRNA-1:exon:2697;Parent=Msa0005070-mRNA-1
chr1_1 exon 7534856 7535044 7534856 ID=Msa0005070-mRNA-1:exon:2696;Parent=Msa0005070-mRNA-1
chr1_1 exon 7535594 7535689 7535594 ID=Msa0005070-mRNA-1:exon:2695;Parent=Msa0005070-mRNA-1
chr1_1 exon 7536050 7536103 7536050 ID=Msa0005070-mRNA-1:exon:2694;Parent=Msa0005070-mRNA-1
chr1_1 exon 7536285 7536381 7536285 ID=Msa0005070-mRNA-1:exon:2693;Parent=Msa0005070-mRNA-1
chr1_1 exon 7538659 7538747 7538659 ID=Msa0005070-mRNA-1:exon:2692;Parent=Msa0005070-mRNA-1
chr1_1 exon 7538847 7538924 7538847 ID=Msa0005070-mRNA-1:exon:2691;Parent=Msa0005070-mRNA-1
chr1_1 exon 7539034 7539102 7539034 ID=Msa0005070-mRNA-1:exon:2690;Parent=Msa0005070-mRNA-1
chr1_1 exon 7540282 7540365 7540282 ID=Msa0005070-mRNA-1:exon:2689;Parent=Msa0005070-mRNA-1
chr1_1 exon 7540472 7540543 7540472 ID=Msa0005070-mRNA-1:exon:2688;Parent=Msa0005070-mRNA-1
chr1_1 exon 7540751 7540825 7540751 ID=Msa0005070-mRNA-1:exon:2687;Parent=Msa0005070-mRNA-1
chr1_1 exon 7540945 7541020 7540945 ID=Msa0005070-mRNA-1:exon:2686;Parent=Msa0005070-mRNA-1
chr1_1 exon 7541111 7541172 7541111 ID=Msa0005070-mRNA-1:exon:2685;Parent=Msa0005070-mRNA-1
chr1_1 exon 7541262 7541313 7541262 ID=Msa0005070-mRNA-1:exon:2684;Parent=Msa0005070-mRNA-1
chr1_1 exon 7541412 7541470 7541412 ID=Msa0005070-mRNA-1:exon:2683;Parent=Msa0005070-mRNA-1
chr1_1 exon 7542382 7542425 7542382 ID=Msa0005070-mRNA-1:exon:2682;Parent=Msa0005070-mRNA-1
chr1_1 exon 7542570 7542961 7542570 ID=Msa0005070-mRNA-1:exon:2681;Parent=Msa0005070-mRNA-1
chr1_1 five_prime_UTR 7542931 7542961 7542931 ID=Msa0005070-mRNA-1:five_prime_utr;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7542570 7542930 7542570 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7542382 7542425 7542382 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7541412 7541470 7541412 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7541262 7541313 7541262 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7541111 7541172 7541111 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7540945 7541020 7540945 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7540751 7540825 7540751 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7540472 7540543 7540472 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7540282 7540365 7540282 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7539034 7539102 7539034 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7538847 7538924 7538847 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7538659 7538747 7538659 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7536285 7536381 7536285 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7536050 7536103 7536050 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7535594 7535689 7535594 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7534856 7535044 7534856 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7534685 7534762 7534685 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7533991 7534035 7533991 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7533629 7533718 7533629 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 CDS 7533456 7533539 7533456 ID=Msa0005070-mRNA-1:cds;Parent=Msa0005070-mRNA-1
chr1_1 three_prime_UTR 7533393 7533455 7533393 ID=Msa0005070-mRNA-1:three_prime_utr;Parent=Msa0005070-mRNA-1
Gene Sequence

>Msa0005070

ATGAACGACTTCACCTTGACCCCTCACCATTTCAACTTGCTCACTACTCTCCCCTCGCCGGTGAACTGTAACTGCCAACTGCTAACCTTCGCCGGCGCGGCAATGTTAACACCAAAATCATTTGGTAATTGTTACAACCACTTGGTGTTGGTGGTGACAGTTATTCTCCTTCTTCTTCTACCTCATTCCTCACTCGCTATCCGATCACATGCTCACTCCGATCAAATCCAACTCATCAACTCCACCACTGACTCCAATATCTCCCTCTCCACCACTCCTCGTCAAGGTTCCTTCGCCGATATCATTGATCGTGCTCTTCAGCACGAGTTCACCGAAGAAAACGATGATCAAAACCAACAAGTGCCTGAATCGGGAGGTTTCAACAACAGTGTTGCAGAACAACAGGCTGTACTGGAGACTGTCGCCAGAGTCACACCGAACAAAAATGACACTAAAGATGAAAAGTCATTTCAACTCCATAGAGGTGAAGACACCCCAATGTTAATTGATCGAAAGGACAACGTATTTATCATTTCTAACTTTAAATCCAAGTATCCGGTGCTGCAGCTAGATTTACGATTGATTTCAGACTTGGTAGTTGCTATTGTTTCGGCAACTTGTGGTGGTGTCGCGTTTGCTTTTGCTGGACAACCGGTCATTACTGGATATCTTCTAGCTGGCTCCATTATTGGACCCGGAGGCTTTAACTTCATCAATGAAATGGTGCAGGTGGAAACAGTGGCTCAATTCGGCGTGATATTTATTCTTTTTGCATTGGGCCTGGAGTTTTCCATGACAAAGCTTCGAGTTGTTCGATCTGTTGCTGTTCTTGGTGGCTTACTTCAGATTTTTCTATTTATGTGCATGTGTGGTTTTACTGTATCGTTATGTGGTGGTAAAGCTTCAGAAGGGATTTTTGTTGGTGCTTTCCTTTCTATGTCTTCAACAGCAGTGGTCTTGAAGTTTTTGATGGAAAAGAACACTACTAATGCCCTTCATGGACAAGTCACAATTGGGACCCTTATTTTACAGGATTGTGCTGTTGGATTGCTCTTTGCATTGCTCCCAGTTTTGGGTGGCACCTCAGGTGTTTTTCAAGGAGTGTTATCAATGACAAAGCTGTTGGTGACATTGATTGCATTTCTCTCTATTCTGTCAATATTGTCTCGCACTTGCCTTCCGTGGTTGCTTAAACTGATGATAAGTCTATCGTCACAGACAAATGAACTCTATCAGCTGGCATCTGTTGCAATCTGCTTGCTTGTAGCCTGGTGTAGCGATAAGCTGGGATTAAGTCTAGAACTAGGTTCCTTTGCTGCTGGAGTGATGATTGCAACCACTGATCTGGCTCCACATACACTAGAACAAATTGAACCCATTTGCAATCTTTTCGCTGCACTTTTCCTTTCAAGCATTGGAATGCTGATTCATGTTCATTTCCTCTGGAACCATGTTGATATTTTGGTAGCATCGGTTATTTTGGTGATTGTTATAAAAACAATCATAATTGCTTCAGTTGTAAAAGGATTTGGTTACAATAACAAGACTTCAGTACTTGTAGGAATGTCCATGGCACAGATAGGAGAATTTGCTTTTGTTCTTCTCAGTCGTGCTTCAAATCTTCATCTAGTTGAGGGTAAGCTATATCTGCTGCTTCTTGGGACCACAGCTCTTAGTCTGGTGACGACTCCTTTACTTTTCAAGCTGATTCCTGCTGTAGTGCATCTTGGTGTGCTATTGAGGTGGTTTTCTCCTGACAGTGCAGTAGAGATTGGATACAAGGTAGATAACCTCCGCTCAGATAGTGGCAAGCAGCGAGTAGTTTTGATAGACCAAGAAGCTCATGATTGTTAA

Protein sequence

>Msa0005070

MNDFTLTPHHFNLLTTLPSPVNCNCQLLTFAGAAMLTPKSFGNCYNHLVLVVTVILLLLLPHSSLAIRSHAHSDQIQLINSTTDSNISLSTTPRQGSFADIIDRALQHEFTEENDDQNQQVPESGGFNNSVAEQQAVLETVARVTPNKNDTKDEKSFQLHRGEDTPMLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVAIVSATCGGVAFAFAGQPVITGYLLAGSIIGPGGFNFINEMVQVETVAQFGVIFILFALGLEFSMTKLRVVRSVAVLGGLLQIFLFMCMCGFTVSLCGGKASEGIFVGAFLSMSSTAVVLKFLMEKNTTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVFQGVLSMTKLLVTLIAFLSILSILSRTCLPWLLKLMISLSSQTNELYQLASVAICLLVAWCSDKLGLSLELGSFAAGVMIATTDLAPHTLEQIEPICNLFAALFLSSIGMLIHVHFLWNHVDILVASVILVIVIKTIIIASVVKGFGYNNKTSVLVGMSMAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLRWFSPDSAVEIGYKVDNLRSDSGKQRVVLIDQEAHDC*