AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0099080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099080 MtrunA17_Chr1g0151391 96.452 451 16 0 333 783 3 453 0.0 920
Msa0099080 MtrunA17_Chr8g0361931 61.830 448 170 1 337 783 2 449 0.0 603
Msa0099080 MtrunA17_Chr1g0151371 75.766 359 83 1 338 696 7 361 0.0 569
Msa0099080 MtrunA17_Chr1g0151361 96.296 270 10 0 1 270 1 270 0.0 539
Msa0099080 MtrunA17_Chr1g0151361 68.056 72 22 1 277 347 205 276 8.93e-20 90.5
Msa0099080 MtrunA17_Chr2g0299421 63.052 249 89 1 8 253 14 262 4.03e-108 331
Msa0099080 MtrunA17_Chr4g0071071 65.587 247 84 1 7 253 95 340 3.34e-107 332
Msa0099080 MtrunA17_Chr4g0071091 56.627 249 108 0 5 253 10 258 2.96e-97 303
Msa0099080 MtrunA17_Chr2g0299401 58.871 248 99 1 8 252 10 257 1.85e-96 301
Msa0099080 MtrunA17_Chr2g0299461 49.834 301 98 2 6 253 6 306 1.61e-92 292
Msa0099080 MtrunA17_Chr2g0299391 57.490 247 104 1 8 253 15 261 1.58e-87 278
Msa0099080 MtrunA17_Chr1g0151381 61.250 160 41 2 112 270 5 144 1.71e-51 176
Msa0099080 MtrunA17_Chr1g0151381 88.406 69 7 1 269 336 71 139 2.47e-33 125
Msa0099080 MtrunA17_Chr5g0419651 36.111 72 45 1 345 415 9 80 3.40e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099080 AT2G46210.1 62.864 447 166 0 337 783 3 449 0.0 622
Msa0099080 AT3G61580.1 63.964 444 160 0 340 783 6 449 0.0 620
Msa0099080 AT5G11910.4 58.781 279 110 1 5 283 37 310 8.55e-112 343
Msa0099080 AT5G11910.1 58.781 279 110 1 5 283 19 292 9.18e-112 342
Msa0099080 AT3G47560.1 61.450 262 96 2 6 267 8 264 3.91e-105 323
Msa0099080 AT3G47560.4 61.450 262 96 2 6 267 44 300 1.25e-104 323
Msa0099080 AT3G47590.1 61.044 249 95 1 5 253 56 302 8.01e-102 317
Msa0099080 AT3G47560.3 56.294 286 98 2 6 267 8 290 3.17e-101 314
Msa0099080 AT1G29840.1 60.241 249 97 1 5 253 59 305 2.20e-100 313
Msa0099080 AT3G47560.5 55.709 289 96 3 6 267 8 291 5.93e-99 308
Msa0099080 AT3G47560.2 51.438 313 98 3 6 267 8 317 5.28e-95 299
Msa0099080 AT2G19550.1 56.000 250 101 5 9 253 5 250 2.58e-82 266
Msa0099080 AT5G11910.3 66.197 142 48 0 5 146 37 178 2.05e-61 205
Msa0099080 AT5G11910.2 66.197 142 48 0 5 146 19 160 2.51e-61 204
Msa0099080 AT3G47590.2 59.494 158 64 0 5 162 56 213 1.39e-60 204
Msa0099080 AT1G26340.1 42.857 70 39 1 345 413 9 78 8.35e-12 63.9

Find 168 sgRNAs with CRISPR-Local

Find 1112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTACAATTGTGTGTCTTTC+TGG 0.051765 1_3:-5098152 Msa0099080:CDS
ATGTTCTTTGTCAGTGTTTA+TGG 0.122801 1_3:-5098996 Msa0099080:CDS
TGGTTTCTTGTTTACCTAAT+TGG 0.140709 1_3:-5098467 Msa0099080:CDS
CAGTTTATGCAGATTCTTTC+TGG 0.150958 1_3:-5098843 Msa0099080:CDS
GCGTTAGTGCACGTGCTTTC+TGG 0.174585 1_3:-5098954 Msa0099080:CDS
GCATAAACTGATTCCATTTC+CGG 0.178406 1_3:+5098856 None:intergenic
CGCTTTGACTTCGCCGGAAA+TGG 0.227244 1_3:-5116000 Msa0099080:CDS
AGTTACTGAAGAAAGTTTAA+TGG 0.228979 1_3:-5113227 Msa0099080:CDS
GAGGATTAATGGGTCTTCTT+TGG 0.243891 1_3:-5098932 Msa0099080:CDS
GGTTTCTTGTTTACCTAATT+GGG 0.245592 1_3:-5098466 Msa0099080:CDS
TCTTGGATGGATTGGTTTCA+TGG 0.255282 1_3:-5098282 Msa0099080:CDS
TTTGAGGAATGCGGCTTTGC+AGG 0.255426 1_3:-5098103 Msa0099080:CDS
CAGAGGAGCTTACCCATTTC+CGG 0.259129 1_3:+5115987 None:intergenic
CGTGCTTTCTGGAGGATTAA+TGG 0.261392 1_3:-5098943 Msa0099080:CDS
TGAATTGACAAGCTTAGTTT+TGG 0.262589 1_3:-5112927 Msa0099080:CDS
CTTTCTGGTAATGTTCTTGC+TGG 0.262893 1_3:-5098828 Msa0099080:CDS
TTGATGTGAAGTGTTCTTCT+TGG 0.272066 1_3:-5098299 Msa0099080:CDS
CTGGGTTTGTTCGAAGAAAA+AGG 0.274037 1_3:-5099056 Msa0099080:CDS
AAAGAACATAACAGAAATTA+TGG 0.280581 1_3:+5099010 None:intergenic
TCATGATTCTGGTCATTATC+AGG 0.288041 1_3:-5098889 Msa0099080:CDS
TATCAAGTTTCATAATAATA+AGG 0.288163 1_3:-5112900 Msa0099080:CDS
GGTTGGATTGGTCATGATTC+TGG 0.304792 1_3:-5098900 Msa0099080:CDS
AGATCTACGACGTTTCAAAA+TGG 0.310327 1_3:-5099274 Msa0099080:CDS
CGGTTCCGAGAAATTTAGTT+TGG 0.314806 1_3:-5098062 Msa0099080:CDS
AACTGCCAGTGGCAAAGTTT+TGG 0.314883 1_3:+5099147 None:intergenic
AACAGGGTGTTGACAGTTCA+TGG 0.316275 1_3:-5113064 Msa0099080:intron
GTTATATGCCTCAAAATATA+AGG 0.324188 1_3:-5113791 Msa0099080:CDS
CATAAACTGCGCATCATAGA+AGG 0.328530 1_3:-5106971 Msa0099080:CDS
TTCTGGTCATTATCAGGTTA+TGG 0.330574 1_3:-5098883 Msa0099080:CDS
CATACAGTTGTCAATATATC+TGG 0.333543 1_3:-5113763 Msa0099080:CDS
AAAACCCTCTCACCCCAATT+AGG 0.338161 1_3:+5098453 None:intergenic
AAAAGTTCCATCTTTCTATT+AGG 0.338194 1_3:+5098525 None:intergenic
GGTGAACATTGCTGCTGCTC+TGG 0.358274 1_3:-5116046 Msa0099080:CDS
ACATCCAAGTAGACACGATT+TGG 0.362567 1_3:-5106860 Msa0099080:intron
TTTCTCCGAACTAACCAAAC+TGG 0.365435 1_3:-5099075 Msa0099080:CDS
ACATCTAAGCAGACGTGCTT+TGG 0.366329 1_3:-5112869 Msa0099080:CDS
GTGCTTTCTGGAGGATTAAT+GGG 0.367934 1_3:-5098942 Msa0099080:CDS
TTTGAGGAAGATTTCGCCTT+TGG 0.369780 1_3:-5098205 Msa0099080:CDS
CATGAACTGCACATCATAGA+AGG 0.370482 1_3:-5112980 Msa0099080:CDS
TATGTAGTTACTGCAATTGT+TGG 0.372460 1_3:-5114673 Msa0099080:CDS
TGCTTACTATTCAGACTTTG+AGG 0.372522 1_3:-5098119 Msa0099080:CDS
GAAGATTTCGCCTTTGGTTA+AGG 0.373280 1_3:-5098199 Msa0099080:CDS
TTCTTTGGATTCAAAGTGGT+TGG 0.376121 1_3:-5098917 Msa0099080:CDS
TTCTTCGAACAAACCCAGTT+TGG 0.378932 1_3:+5099061 None:intergenic
AGGTTATGGTTAACCGGAAA+TGG 0.379608 1_3:-5098869 Msa0099080:CDS
CAAACCCAGTTTGGTTAGTT+CGG 0.383963 1_3:+5099070 None:intergenic
GTCCACCGACGGCTCATGAT+TGG 0.391021 1_3:-5098347 Msa0099080:CDS
GTCGTAGATCTTGCCGTCAA+TGG 0.400669 1_3:+5099286 None:intergenic
GTTTGGTTAGTTCGGAGAAA+AGG 0.402748 1_3:+5099078 None:intergenic
TAAGCATTGAATGGTGGAAA+TGG 0.406654 1_3:-5098803 Msa0099080:CDS
TTCCTCTTGCAAGGTTAAAT+CGG 0.407439 1_3:+5113740 None:intergenic
AATGGTAAATGTTGAAGATC+AGG 0.410263 1_3:+5098735 None:intergenic
GCTTCCCAAACTAAATTTCT+CGG 0.412040 1_3:+5098057 None:intergenic
GCTTTGACTTCGCCGGAAAT+GGG 0.413207 1_3:-5115999 Msa0099080:intron
ATTATCAGGTTATGGTTAAC+CGG 0.413560 1_3:-5098875 Msa0099080:CDS
TTGGATTTGGTACCCTTTGT+TGG 0.423243 1_3:-5098487 Msa0099080:CDS
CTTAGTTGTGGAATTTATCA+AGG 0.423928 1_3:-5106906 Msa0099080:CDS
AGTGAAGGTTCATTTCAGTA+TGG 0.429147 1_3:-5114757 Msa0099080:CDS
CAAACTAAATTTCTCGGAAC+CGG 0.433414 1_3:+5098063 None:intergenic
AGTGTTCTTCTTGGATGGAT+TGG 0.433868 1_3:-5098290 Msa0099080:CDS
TCTCCTCTGTGTAACAAAAT+CGG 0.442943 1_3:+5116468 None:intergenic
TTTGGTTAGTTCGGAGAAAA+GGG 0.451322 1_3:+5099079 None:intergenic
CATCTTGGCCGGCGAGGTTG+AGG 0.457435 1_3:+5099219 None:intergenic
GATCTACGACGTTTCAAAAT+GGG 0.459792 1_3:-5099273 Msa0099080:CDS
CAGAAAGACACACAATTGTA+AGG 0.461532 1_3:+5098153 None:intergenic
GTCTTCCACGGTGTAATTTG+AGG 0.464009 1_3:-5098221 Msa0099080:CDS
GGCAAGGGATCTTACTAAAC+CGG 0.465661 1_3:-5098082 Msa0099080:CDS
TGTGAAGTGTTCTTCTTGGA+TGG 0.468484 1_3:-5098295 Msa0099080:CDS
TCTTGGTCAGTTACCAGCAT+TGG 0.468669 1_3:-5098629 Msa0099080:CDS
GCAATTGTTGGTCATAGTAA+AGG 0.471541 1_3:-5114661 Msa0099080:intron
TGGGAAGCTGTTAATACTCA+TGG 0.473340 1_3:-5098042 Msa0099080:CDS
TGGATTCAAAGTGGTTGGAT+TGG 0.479141 1_3:-5098912 Msa0099080:CDS
CTCGCCGCCGGGATGGTGGT+TGG 0.480612 1_3:+5099250 None:intergenic
ATTTGTTTCCGCGTCTTCCA+CGG 0.485220 1_3:-5098233 Msa0099080:CDS
TGCGGGTATAGTTTCATCCA+TGG 0.486447 1_3:+5107027 None:intergenic
GGAATGCATCAGTGACATCT+TGG 0.491255 1_3:+5099204 None:intergenic
GAGATAAACCTTTCCATTCA+CGG 0.491318 1_3:-5106832 Msa0099080:intron
GGTTCCGAGAAATTTAGTTT+GGG 0.492737 1_3:-5098061 Msa0099080:CDS
GTTTCTTGTTTACCTAATTG+GGG 0.497767 1_3:-5098465 Msa0099080:CDS
GCACTTGTTATTGTTTGCCA+TGG 0.497858 1_3:-5116382 Msa0099080:CDS
GTTTACCTAATTGGGGTGAG+AGG 0.499023 1_3:-5098458 Msa0099080:CDS
TTTACCTAATTGGGGTGAGA+GGG 0.503473 1_3:-5098457 Msa0099080:CDS
AGAGGAATGGAGAGTCGCTT+GGG 0.503490 1_3:-5113724 Msa0099080:CDS
GAGGAGAGGAAGCTCGCCGC+CGG 0.506758 1_3:+5099238 None:intergenic
TGGTTTGAGAAGCAAGCTCA+TGG 0.509660 1_3:-5098327 Msa0099080:CDS
AAAAGTGCCTAATAGAAAGA+TGG 0.513187 1_3:-5098532 Msa0099080:CDS
GCGAGGACTAGAACCGTGAA+TGG 0.513821 1_3:+5106819 None:intergenic
TGCCGGTACAGTTTCATCCA+TGG 0.515465 1_3:+5113039 None:intergenic
AAGAGGAATGGAGAGTCGCT+TGG 0.515819 1_3:-5113725 Msa0099080:CDS
GCCTTCCGCTTTGACTTCGC+CGG 0.518979 1_3:-5116006 Msa0099080:CDS
GAAGCTCGCCGCCGGGATGG+TGG 0.525178 1_3:+5099246 None:intergenic
ATTTCTCCTCACGGAAGTGT+TGG 0.525331 1_3:+5114695 None:intergenic
CAATTGTGTGTCTTTCTGGA+AGG 0.526261 1_3:-5098148 Msa0099080:CDS
AACTCTAAAGCATCTTCTGC+GGG 0.527388 1_3:+5107010 None:intergenic
CAGGATAATAACTCCAATGC+TGG 0.530353 1_3:+5098616 None:intergenic
TGTTGACAGTTCAGAATCCA+TGG 0.537906 1_3:-5107044 Msa0099080:CDS
GGAATGCGGCTTTGCAGGCA+AGG 0.538823 1_3:-5098098 Msa0099080:CDS
TGCATCAGTGACATCTTGGC+CGG 0.539741 1_3:+5099208 None:intergenic
AACTCTAAAGCATCTTCTGC+CGG 0.540776 1_3:+5113022 None:intergenic
TTCTCCGAACTAACCAAACT+GGG 0.542349 1_3:-5099074 Msa0099080:CDS
ATTTAACCTTGCAAGAGGAA+TGG 0.542519 1_3:-5113737 Msa0099080:CDS
TGAATTGACAAGCTTAGTTG+TGG 0.543500 1_3:-5106918 Msa0099080:CDS
ATACAAAGGATCAAACAAGA+TGG 0.543824 1_3:-5113691 Msa0099080:CDS
GACTCTCCATTCCTCTTGCA+AGG 0.545301 1_3:+5113731 None:intergenic
ACAACACTCGCGGCGATGCA+TGG 0.546353 1_3:-5099313 Msa0099080:CDS
CTGCGCATCATAGAAGGGGC+TGG 0.549088 1_3:-5106965 Msa0099080:CDS
ATAAACTGCGCATCATAGAA+GGG 0.549312 1_3:-5106970 Msa0099080:CDS
TTGCTGGTATAAGCATTGAA+TGG 0.551437 1_3:-5098812 Msa0099080:CDS
GAGGAAGCTCGCCGCCGGGA+TGG 0.553344 1_3:+5099243 None:intergenic
GCTGCTGCTCTGGAAAAGAA+TGG 0.553954 1_3:-5116036 Msa0099080:CDS
AAATGGGCCAACCACCATCC+CGG 0.554203 1_3:-5099257 Msa0099080:CDS
GTCTGTAAGCGGATGGAGGG+TGG 0.555473 1_3:+5099174 None:intergenic
GTAAACAAGAAACCAACAAA+GGG 0.556044 1_3:+5098475 None:intergenic
AGGAGAGGAAGCTCGCCGCC+GGG 0.564363 1_3:+5099239 None:intergenic
CAAGACTATTACAAGCAAGA+TGG 0.565814 1_3:+5098766 None:intergenic
AAGACACACAATTGTAAGGA+AGG 0.570281 1_3:+5098157 None:intergenic
TGTTTATGTTGGTCCACCGA+CGG 0.571686 1_3:-5098358 Msa0099080:CDS
ATGAACTGCACATCATAGAA+GGG 0.573729 1_3:-5112979 Msa0099080:CDS
ATCCATGGATGAAACTGTAC+CGG 0.573783 1_3:-5113041 Msa0099080:CDS
CATCTCCAAAACTTTGCCAC+TGG 0.575527 1_3:-5099152 Msa0099080:CDS
TCTCAAACTCTCAAATGTGT+TGG 0.577526 1_3:-5116511 Msa0099080:five_prime_UTR
TGGAGATGTCTGTAAGCGGA+TGG 0.578065 1_3:+5099167 None:intergenic
AAGTAGACACGATTTGGAAG+AGG 0.578521 1_3:-5106854 Msa0099080:intron
TATTCAGACTTTGAGGAATG+CGG 0.578567 1_3:-5098112 Msa0099080:CDS
GATGGGTAATAGTGTTTAGA+CGG 0.578589 1_3:+5113203 None:intergenic
TTGCACAGATCCTTAACCAA+AGG 0.580004 1_3:+5098189 None:intergenic
GATGCATGGATCTCCATTGA+CGG 0.586989 1_3:-5099299 Msa0099080:CDS
GTTGACAGTTCATGGATCCA+TGG 0.588471 1_3:-5113056 Msa0099080:CDS
CTTCCTCTCCTCAACCTCGC+CGG 0.591399 1_3:-5099227 Msa0099080:CDS
GGCCGATTTAACCTTGCAAG+AGG 0.593277 1_3:-5113742 Msa0099080:CDS
AACCAATCATGAGCCGTCGG+TGG 0.594561 1_3:+5098345 None:intergenic
AGCCTAGCAAAACACATCAC+AGG 0.594917 1_3:+5098597 None:intergenic
AAATTACACCGTGGAAGACG+CGG 0.594958 1_3:+5098225 None:intergenic
CGGATGGAGGGTGGAAAGCG+AGG 0.606786 1_3:+5099183 None:intergenic
GATGTCTGTAAGCGGATGGA+GGG 0.608266 1_3:+5099171 None:intergenic
TTAGTGCACGTGCTTTCTGG+AGG 0.608555 1_3:-5098951 Msa0099080:CDS
GACTAGAACCGTGAATGGAA+AGG 0.613325 1_3:+5106824 None:intergenic
GGTAAACAAGAAACCAACAA+AGG 0.615111 1_3:+5098474 None:intergenic
GCAGCAGCAATGTTCACCAT+GGG 0.617650 1_3:+5116051 None:intergenic
AGTGTTGGACAATAGCTCGC+AGG 0.618305 1_3:+5114710 None:intergenic
TCCGGCGAAGTCAAAGCGGA+AGG 0.619295 1_3:+5116005 None:intergenic
GAATGCGGCTTTGCAGGCAA+GGG 0.625318 1_3:-5098097 Msa0099080:CDS
GCAAACAATAACAAGTGCTG+TGG 0.625764 1_3:+5116387 None:intergenic
GGTCTTCTTTGGATTCAAAG+TGG 0.627395 1_3:-5098921 Msa0099080:CDS
TCAAACCAATCATGAGCCGT+CGG 0.628168 1_3:+5098342 None:intergenic
AGCAGCAGCAATGTTCACCA+TGG 0.631411 1_3:+5116050 None:intergenic
CACCACGGTGAAAATCTCGT+TGG 0.634734 1_3:-5116430 Msa0099080:CDS
CAGTGACATCTTGGCCGGCG+AGG 0.636188 1_3:+5099213 None:intergenic
AAACTCTAAAGCATCTTCTG+CGG 0.642659 1_3:+5107009 None:intergenic
TAAACTGCGCATCATAGAAG+GGG 0.651146 1_3:-5106969 Msa0099080:CDS
TAACTACATATTTCTCCTCA+CGG 0.651177 1_3:+5114686 None:intergenic
CTGGTATAAGCATTGAATGG+TGG 0.657971 1_3:-5098809 Msa0099080:CDS
TATCAAGGTTAATAATGACA+AGG 0.658895 1_3:-5106891 Msa0099080:CDS
TGAACTGCACATCATAGAAG+GGG 0.660400 1_3:-5112978 Msa0099080:CDS
AGATGTCTGTAAGCGGATGG+AGG 0.661041 1_3:+5099170 None:intergenic
CCTTGGAAGATTGAAAACCA+TGG 0.663646 1_3:+5116365 None:intergenic
TCTATAGGAAAGGATTCCCA+TGG 0.665524 1_3:-5116067 Msa0099080:intron
TTGTCCTCTAGGGAAAGTGA+AGG 0.672669 1_3:-5114772 Msa0099080:intron
TGGATGGATTGGTTTCATGG+TGG 0.682579 1_3:-5098279 Msa0099080:CDS
GTCACGTAGGTAACTGCCAG+TGG 0.687851 1_3:+5099136 None:intergenic
TGGCCGGCGAGGTTGAGGAG+AGG 0.689110 1_3:+5099224 None:intergenic
CATTTCCGGCGAAGTCAAAG+CGG 0.705029 1_3:+5116001 None:intergenic
TCAGAATGAAAGCCTCTCAG+CGG 0.721240 1_3:+5116568 None:intergenic
CAGAGACGACGTAGTCACGT+AGG 0.725034 1_3:+5099123 None:intergenic
TGGGCCAACCACCATCCCGG+CGG 0.736027 1_3:-5099254 Msa0099080:CDS
ATCTTCCTCAAATTACACCG+TGG 0.747566 1_3:+5098216 None:intergenic
TATTGTCCAACACTTCCGTG+AGG 0.759787 1_3:-5114701 Msa0099080:CDS
ATCACGATAAGAAACCACCA+CGG 0.800230 1_3:-5116445 Msa0099080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAATTTAATATT+TGG + chr1_3:5111662-5111681 None:intergenic 0.0%
!!! AATAAAAAATTAAAATTTTA+AGG - chr1_3:5113719-5113738 Msa0099080:CDS 0.0%
!! AAAAATAAAAATAAATAAAA+TGG - chr1_3:5115136-5115155 Msa0099080:intron 0.0%
!! AATTGATTAAATAGTTAATT+TGG - chr1_3:5102353-5102372 Msa0099080:intron 10.0%
!! AAAAAAAAAAAAAAGTAAGA+TGG + chr1_3:5103011-5103030 None:intergenic 10.0%
!!! TCTTACTTTTTTTTTTTTTT+AGG - chr1_3:5103011-5103030 Msa0099080:intron 10.0%
!! TACTATTTACTTTATTAATA+AGG - chr1_3:5103214-5103233 Msa0099080:intron 10.0%
!! TACTATTTACTTTATTAATA+AGG - chr1_3:5103214-5103233 Msa0099080:intron 10.0%
!! TGAAATAATTAAAATATATC+AGG - chr1_3:5103557-5103576 Msa0099080:intron 10.0%
!!! TTTTTGTTATTTTATAAAAC+AGG + chr1_3:5106481-5106500 None:intergenic 10.0%
!!! TCATAAAATTTGAAATTAAA+CGG - chr1_3:5107576-5107595 Msa0099080:intron 10.0%
!! TTAAAAAGAAAAATAAAAGA+AGG - chr1_3:5108741-5108760 Msa0099080:intron 10.0%
!! ATAATTTACTTTAAATACTA+AGG - chr1_3:5109563-5109582 Msa0099080:intron 10.0%
!!! TTCAAATTTCAAATTTTAAT+TGG + chr1_3:5110176-5110195 None:intergenic 10.0%
!!! TTATTTAAAATATCCAAAAA+CGG + chr1_3:5110239-5110258 None:intergenic 10.0%
!!! TCTTTTTTAAAAAAAAAACA+CGG + chr1_3:5110885-5110904 None:intergenic 10.0%
!!! TTTTTTTTAAAAAAGACTTA+CGG - chr1_3:5110889-5110908 Msa0099080:intron 10.0%
!! AAATTTAATACAAAAATCAA+TGG + chr1_3:5111134-5111153 None:intergenic 10.0%
!! ATATTTGCATATTAAAAAAA+TGG - chr1_3:5112080-5112099 Msa0099080:intron 10.0%
!!! TTTATCATTGTTTTTTTTAA+TGG - chr1_3:5112472-5112491 Msa0099080:intron 10.0%
!! TCTAAATATAAAAATATCAA+AGG - chr1_3:5113071-5113090 Msa0099080:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr1_3:5113387-5113406 Msa0099080:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr1_3:5113388-5113407 Msa0099080:intron 10.0%
!! TTAAAAACAAATATATTTGA+AGG + chr1_3:5114017-5114036 None:intergenic 10.0%
!! TAATCAATAAATTTAATGAT+GGG + chr1_3:5114625-5114644 None:intergenic 10.0%
!! ATAATCAATAAATTTAATGA+TGG + chr1_3:5114626-5114645 None:intergenic 10.0%
!!! AAAAATTACTTTTATTTTTG+GGG + chr1_3:5115099-5115118 None:intergenic 10.0%
!! ATAAAAATAAATAAAATGGT+AGG - chr1_3:5115140-5115159 Msa0099080:intron 10.0%
!! TAAAAATAAATAAAATGGTA+GGG - chr1_3:5115141-5115160 Msa0099080:intron 10.0%
!! AAATTAGGTTAATGAAAAAT+GGG + chr1_3:5098375-5098394 None:intergenic 15.0%
!! ACTGATAAATTATTACAATT+AGG + chr1_3:5098552-5098571 None:intergenic 15.0%
!!! CTAATTTATTTAGATTTTTG+TGG - chr1_3:5098762-5098781 Msa0099080:CDS 15.0%
!! CTAAATTAATAAGCTATAAA+AGG - chr1_3:5099083-5099102 Msa0099080:CDS 15.0%
!! AAAATAGAAAAAAACTTCAA+TGG - chr1_3:5099484-5099503 Msa0099080:intron 15.0%
!!! TTGTTCTATTTTTAATAAAC+TGG - chr1_3:5099731-5099750 Msa0099080:intron 15.0%
!!! TGTTCTATTTTTAATAAACT+GGG - chr1_3:5099732-5099751 Msa0099080:intron 15.0%
!! ATATAAATATTTCTCTCAAT+TGG + chr1_3:5100414-5100433 None:intergenic 15.0%
!! ATGTTATAAAGAAGTTAAAA+TGG - chr1_3:5100538-5100557 Msa0099080:intron 15.0%
!! AGAATATTCATATTAAAAAG+AGG - chr1_3:5100674-5100693 Msa0099080:intron 15.0%
!! ATAGATGTTAAAAATAAAAG+AGG - chr1_3:5101034-5101053 Msa0099080:intron 15.0%
!! CTTTATGTAAAAATGAAAAA+AGG - chr1_3:5101190-5101209 Msa0099080:intron 15.0%
!! TATCAAGTTTCATAATAATA+AGG - chr1_3:5101798-5101817 Msa0099080:intron 15.0%
!! AACTATTTAAACATATTGTA+AGG - chr1_3:5102413-5102432 Msa0099080:intron 15.0%
!! ATAAAAAAATTGAACATTGA+GGG + chr1_3:5102569-5102588 None:intergenic 15.0%
!! AATTAATGATTAATTGGTAT+TGG + chr1_3:5102950-5102969 None:intergenic 15.0%
!! AGGTATAATTAATGATTAAT+TGG + chr1_3:5102956-5102975 None:intergenic 15.0%
!!! TAAATGAAGATATTTGTTAA+AGG + chr1_3:5102976-5102995 None:intergenic 15.0%
!! ATTTAATTCATATAAACTGT+CGG + chr1_3:5103433-5103452 None:intergenic 15.0%
!! ATTAAATTCAAAATCTTAAG+TGG - chr1_3:5103446-5103465 Msa0099080:intron 15.0%
!!! TTTTATAATTGGAACTTATA+TGG - chr1_3:5106046-5106065 Msa0099080:intron 15.0%
!!! ACTTCTATTTTTAATAAACT+TGG - chr1_3:5106354-5106373 Msa0099080:intron 15.0%
!! TAATTACATATTTCTCATTA+TGG + chr1_3:5106644-5106663 None:intergenic 15.0%
!!! CTCAAAATAAAATATTTTTG+AGG + chr1_3:5106871-5106890 None:intergenic 15.0%
!!! TTACTTTTTGTTTATTTCAT+TGG - chr1_3:5107018-5107037 Msa0099080:CDS 15.0%
!! CACATTCTATTTAAAAAAAA+TGG - chr1_3:5108600-5108619 Msa0099080:intron 15.0%
!! TTAAACAATTAAAACTTGAA+TGG - chr1_3:5109064-5109083 Msa0099080:intron 15.0%
!!! AGTATTTTCTATAGATATAT+TGG + chr1_3:5109232-5109251 None:intergenic 15.0%
!! TGATATATTTAACAATGATA+CGG - chr1_3:5109666-5109685 Msa0099080:intron 15.0%
!!! TAAATTTAAATAACCGTTTT+TGG - chr1_3:5110223-5110242 Msa0099080:intron 15.0%
!! AAAATAATAACTTCAAGAAA+GGG - chr1_3:5110405-5110424 Msa0099080:intron 15.0%
!! TTAAAAAACTAAATCTTCAA+TGG - chr1_3:5110507-5110526 Msa0099080:intron 15.0%
!!! ATGAACTGTTTTTAAAATAA+CGG - chr1_3:5110579-5110598 Msa0099080:intron 15.0%
!!! TATTTTGTATTTTAGGATAA+TGG - chr1_3:5111527-5111546 Msa0099080:intron 15.0%
!! CATTTATGTTATCTTAAAAA+CGG + chr1_3:5112264-5112283 None:intergenic 15.0%
!! GTTATCTTAAAAAAAAAAGT+AGG + chr1_3:5112699-5112718 None:intergenic 15.0%
!!! ATTGTTTTCAAATTTTAGAT+GGG + chr1_3:5112774-5112793 None:intergenic 15.0%
!!! AATTGTTTTCAAATTTTAGA+TGG + chr1_3:5112775-5112794 None:intergenic 15.0%
!!! TTTTAATGCACATATTTAAA+AGG - chr1_3:5112867-5112886 Msa0099080:CDS 15.0%
!! TCTCAAAATTTATAGAAATT+TGG + chr1_3:5113138-5113157 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG + chr1_3:5113352-5113371 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr1_3:5113389-5113408 Msa0099080:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr1_3:5113452-5113471 Msa0099080:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr1_3:5113453-5113472 Msa0099080:intron 15.0%
!!! TTTTTTATACAACTATTGAT+TGG + chr1_3:5113947-5113966 None:intergenic 15.0%
!!! TTTCTATATCACTATTTTTT+TGG + chr1_3:5114084-5114103 None:intergenic 15.0%
!! TGAATATTACCAAAAATAAA+AGG - chr1_3:5114107-5114126 Msa0099080:intron 15.0%
!! TTATCTATACAAAACATTTA+AGG - chr1_3:5114807-5114826 Msa0099080:intron 15.0%
!! AAAACATTTAAGGAATTTAA+AGG - chr1_3:5114817-5114836 Msa0099080:intron 15.0%
!! GAAATTAGGTTAATGAAAAA+TGG + chr1_3:5098376-5098395 None:intergenic 20.0%
!! TTGATTAGAATTGAACTAAA+GGG - chr1_3:5098600-5098619 Msa0099080:CDS 20.0%
!!! ATTTATTTAGATTTTTGTGG+TGG - chr1_3:5098765-5098784 Msa0099080:CDS 20.0%
!! GATAATTTAGTATGAATACA+GGG - chr1_3:5098945-5098964 Msa0099080:CDS 20.0%
!! ATAATTTAGTATGAATACAG+GGG - chr1_3:5098946-5098965 Msa0099080:CDS 20.0%
!!! TTTTTCAATTTGTTTAGACT+TGG - chr1_3:5099163-5099182 Msa0099080:CDS 20.0%
!! AATATATATCTGTTCTGTTA+GGG - chr1_3:5099528-5099547 Msa0099080:intron 20.0%
!! ATGTATTAGCAATTCTAAAT+TGG - chr1_3:5099810-5099829 Msa0099080:intron 20.0%
!!! ATGAATATCCTTATATTTTG+AGG + chr1_3:5100918-5100937 None:intergenic 20.0%
!!! CTATTTAATCAATTAAGTTG+TGG + chr1_3:5102347-5102366 None:intergenic 20.0%
!! ATAATAACAAACAACTAAAC+AGG + chr1_3:5102487-5102506 None:intergenic 20.0%
!! TTGTCTTTATATATAGTTTG+AGG + chr1_3:5102540-5102559 None:intergenic 20.0%
!! CATAAAAAAATTGAACATTG+AGG + chr1_3:5102570-5102589 None:intergenic 20.0%
!!! CTCAATGTTCAATTTTTTTA+TGG - chr1_3:5102568-5102587 Msa0099080:intron 20.0%
!!! GCTTTTAAAGTATAAATGAA+TGG + chr1_3:5103338-5103357 None:intergenic 20.0%
!! ATATTTAACAATTATGCAGA+CGG - chr1_3:5103500-5103519 Msa0099080:intron 20.0%
!! AAAAGTTCTATCTTTCTATT+GGG + chr1_3:5105058-5105077 None:intergenic 20.0%
!!! AATAGAAAGATAGAACTTTT+GGG - chr1_3:5105058-5105077 Msa0099080:intron 20.0%
!!! ACAGACAATACTTTTATAAT+TGG - chr1_3:5106035-5106054 Msa0099080:intron 20.0%
!! GCATTCAATATTATAAAAAC+TGG + chr1_3:5106416-5106435 None:intergenic 20.0%
!! ATGCATAAACAATTTAAACT+TGG - chr1_3:5106432-5106451 Msa0099080:intron 20.0%
!!! TATGTAATTACGCAATTTTT+TGG - chr1_3:5106654-5106673 Msa0099080:intron 20.0%
!!! TTTGAAACTGAATTTTGTAA+TGG - chr1_3:5106720-5106739 Msa0099080:intron 20.0%
!! TATTGAGAGACTTTATTAAA+GGG + chr1_3:5106847-5106866 None:intergenic 20.0%
!! ATATTGAGAGACTTTATTAA+AGG + chr1_3:5106848-5106867 None:intergenic 20.0%
!!! AATATTTTATTTTGAGTGCA+TGG - chr1_3:5106875-5106894 Msa0099080:CDS 20.0%
!!! ATATTTTATTTTGAGTGCAT+GGG - chr1_3:5106876-5106895 Msa0099080:CDS 20.0%
!! ATCAATCCTTACAAATAAAA+AGG - chr1_3:5107931-5107950 Msa0099080:intron 20.0%
!! CATATTTATCATACTAAAGT+AGG + chr1_3:5108350-5108369 None:intergenic 20.0%
!! ATAAATATGTTACTAAAAGC+AGG - chr1_3:5108361-5108380 Msa0099080:intron 20.0%
!!! TCTTTAAAAAAAATGTCAGT+AGG - chr1_3:5109377-5109396 Msa0099080:intron 20.0%
!!! TTTTTTTTTTAAGGAGTGTT+TGG + chr1_3:5109724-5109743 None:intergenic 20.0%
!! TTCTTGTCACTAATAAAAAA+CGG + chr1_3:5110262-5110281 None:intergenic 20.0%
!!! GAGTTCAAATTTTAAATGTT+TGG + chr1_3:5110291-5110310 None:intergenic 20.0%
!! TGAATATAGAACAAAAAACT+AGG - chr1_3:5110361-5110380 Msa0099080:intron 20.0%
!! GAAAATAATAACTTCAAGAA+AGG - chr1_3:5110404-5110423 Msa0099080:intron 20.0%
!!! AGATTTAGTTTTTTAAACCT+GGG + chr1_3:5110503-5110522 None:intergenic 20.0%
!!! AAGATTTAGTTTTTTAAACC+TGG + chr1_3:5110504-5110523 None:intergenic 20.0%
!!! ATAACATATATTTGCTATCA+CGG - chr1_3:5110838-5110857 Msa0099080:intron 20.0%
!!! ATTTGTTTAGTTCTAATTCT+GGG - chr1_3:5110979-5110998 Msa0099080:intron 20.0%
!! AACTCAAAAAATGATTCTAA+AGG - chr1_3:5111006-5111025 Msa0099080:intron 20.0%
!!! GATTATCAAAAATTGATTCT+AGG + chr1_3:5111223-5111242 None:intergenic 20.0%
!! AACTCAAAAAAGAAAAAACA+AGG + chr1_3:5111506-5111525 None:intergenic 20.0%
!!! TGAGTTCTATTTTGTATTTT+AGG - chr1_3:5111520-5111539 Msa0099080:intron 20.0%
!! ACATTTCATTTATCTTTCTT+TGG - chr1_3:5111816-5111835 Msa0099080:intron 20.0%
!!! TTTTTGAAATTTTTCCGTAT+CGG - chr1_3:5112173-5112192 Msa0099080:intron 20.0%
!! TACAGAATATACAAAACATT+CGG - chr1_3:5112530-5112549 Msa0099080:intron 20.0%
!! TAGAGAGAAAATCTATTTAA+TGG + chr1_3:5112637-5112656 None:intergenic 20.0%
!!! AAATAGATTTTCTCTCTAAA+TGG - chr1_3:5112639-5112658 Msa0099080:intron 20.0%
!!! CAAATGTCAAATTGTTTTTT+TGG + chr1_3:5112811-5112830 None:intergenic 20.0%
!! CAAAAAAACAATTTGACATT+TGG - chr1_3:5112809-5112828 Msa0099080:intron 20.0%
!! ATATCAAAGGAAATACATTA+AGG - chr1_3:5113084-5113103 Msa0099080:intron 20.0%
!! TATCAAAGGAAATACATTAA+GGG - chr1_3:5113085-5113104 Msa0099080:intron 20.0%
!!! CTCTAAAATATAGTAATGTA+CGG + chr1_3:5113259-5113278 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG + chr1_3:5113353-5113372 None:intergenic 20.0%
!! GAAAATGGAATATATTGTAT+TGG - chr1_3:5113411-5113430 Msa0099080:intron 20.0%
!! TATTGAAAATTGAAATGAGT+CGG - chr1_3:5113490-5113509 Msa0099080:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr1_3:5113522-5113541 Msa0099080:intron 20.0%
!!! TAATCATCAGATTTTATTAG+AGG - chr1_3:5113760-5113779 Msa0099080:CDS 20.0%
!!! GGAATTAGTTTTTTTTTTTG+AGG - chr1_3:5113781-5113800 Msa0099080:CDS 20.0%
!!! TTTTTTTTTTGAGGAATTAG+AGG - chr1_3:5113790-5113809 Msa0099080:CDS 20.0%
!! CAATTTAGAAAATAGTTGAA+AGG - chr1_3:5113825-5113844 Msa0099080:intron 20.0%
!! TATCACTATTTAATATCTGA+AGG + chr1_3:5114048-5114067 None:intergenic 20.0%
!!! CAATTATTGCCTTTTATTTT+TGG + chr1_3:5114119-5114138 None:intergenic 20.0%
!!! ATTTTCGAAACAATAATGAT+AGG - chr1_3:5114196-5114215 Msa0099080:intron 20.0%
!!! TTTTCGAAACAATAATGATA+GGG - chr1_3:5114197-5114216 Msa0099080:intron 20.0%
!! CTTCAAAAAAAAAAATGAGA+GGG - chr1_3:5114222-5114241 Msa0099080:intron 20.0%
!!! TTTCTCATTTTCAAAGTAAA+AGG - chr1_3:5114719-5114738 Msa0099080:CDS 20.0%
!!! TTCTCATTTTCAAAGTAAAA+GGG - chr1_3:5114720-5114739 Msa0099080:CDS 20.0%
!! TATTAATATTAGTAGTTTCC+AGG + chr1_3:5114862-5114881 None:intergenic 20.0%
!!! AATGATTTTGTGAATACATT+AGG + chr1_3:5115196-5115215 None:intergenic 20.0%
!! AAAGAACATAACAGAAATTA+TGG + chr1_3:5115691-5115710 None:intergenic 20.0%
!!! GTTTACTTTGAATCATTTTT+CGG - chr1_3:5116313-5116332 Msa0099080:intron 20.0%
! ACTGTGTATTAATCAAAACA+TGG + chr1_3:5098408-5098427 None:intergenic 25.0%
! GATTAATACACAGTCTAATT+AGG - chr1_3:5098414-5098433 Msa0099080:CDS 25.0%
!!! AATAATCTGAAAAGTGCTTA+TGG + chr1_3:5098474-5098493 None:intergenic 25.0%
! GTTGATTAGAATTGAACTAA+AGG - chr1_3:5098599-5098618 Msa0099080:CDS 25.0%
! GGATAATTTAGTATGAATAC+AGG - chr1_3:5098944-5098963 Msa0099080:CDS 25.0%
!! GAGTGTTTTCAAATTTCAAT+GGG + chr1_3:5099189-5099208 None:intergenic 25.0%
!! TATTATGTTCTCTTAGTCTT+GGG + chr1_3:5099230-5099249 None:intergenic 25.0%
! TTATTATGTTCTCTTAGTCT+TGG + chr1_3:5099231-5099250 None:intergenic 25.0%
!! TATTATGTTCTCTTAGTCTT+GGG + chr1_3:5099230-5099249 None:intergenic 25.0%
! TTATTATGTTCTCTTAGTCT+TGG + chr1_3:5099231-5099250 None:intergenic 25.0%
! GCTTAAGTTAGATTAAGTTT+CGG - chr1_3:5099423-5099442 Msa0099080:intron 25.0%
! ACAGAACAGATATATATTGA+GGG + chr1_3:5099526-5099545 None:intergenic 25.0%
! AACAGAACAGATATATATTG+AGG + chr1_3:5099527-5099546 None:intergenic 25.0%
! CAATATATATCTGTTCTGTT+AGG - chr1_3:5099527-5099546 Msa0099080:intron 25.0%
! AAATCATTATATTGTCCTCT+AGG - chr1_3:5099915-5099934 Msa0099080:intron 25.0%
! AATCATTATATTGTCCTCTA+GGG - chr1_3:5099916-5099935 Msa0099080:intron 25.0%
!!! CGTGATAATGTAATAGATTT+TGG - chr1_3:5100170-5100189 Msa0099080:intron 25.0%
!!! AATATTTTATTTTGCGTGCA+TGG - chr1_3:5100241-5100260 Msa0099080:intron 25.0%
!!! ATATTTTATTTTGCGTGCAT+GGG - chr1_3:5100242-5100261 Msa0099080:intron 25.0%
!!! GCATTTTATGGTTGATATTT+GGG - chr1_3:5100359-5100378 Msa0099080:intron 25.0%
! CAGTTTAATCAATGTAAACT+TGG + chr1_3:5100701-5100720 None:intergenic 25.0%
! GTTATATGCCTCAAAATATA+AGG - chr1_3:5100907-5100926 Msa0099080:intron 25.0%
!! TGGGTGAAAATTTTATACAA+AGG - chr1_3:5100993-5101012 Msa0099080:intron 25.0%
! TCACCTATTCATCTATTATT+TGG - chr1_3:5101093-5101112 Msa0099080:intron 25.0%
! CACCTATTCATCTATTATTT+GGG - chr1_3:5101094-5101113 Msa0099080:intron 25.0%
! ACCTATTCATCTATTATTTG+GGG - chr1_3:5101095-5101114 Msa0099080:intron 25.0%
! ATGCCAAAAATAGAGATTAT+CGG + chr1_3:5101238-5101257 None:intergenic 25.0%
! AGTTACTGAAGAAAGTTTAA+TGG - chr1_3:5101471-5101490 Msa0099080:intron 25.0%
! TAAAAATCCCTAAAAATTGC+AGG - chr1_3:5101527-5101546 Msa0099080:intron 25.0%
! ATCCTACTGACAAATAAAAA+TGG - chr1_3:5101926-5101945 Msa0099080:intron 25.0%
!! TTAATATCAGATTGATAACC+TGG + chr1_3:5102107-5102126 None:intergenic 25.0%
! CTTCTTTCTAATTCTATGTA+TGG - chr1_3:5102140-5102159 Msa0099080:intron 25.0%
! GTTTGAATTCTAATTGAAAG+AGG - chr1_3:5102255-5102274 Msa0099080:intron 25.0%
! AAATAGTTTAGAGACCAATT+TGG + chr1_3:5102401-5102420 None:intergenic 25.0%
!!! TGATGTTTTTTCATAGCTTA+GGG + chr1_3:5102510-5102529 None:intergenic 25.0%
!!! TTGATGTTTTTTCATAGCTT+AGG + chr1_3:5102511-5102530 None:intergenic 25.0%
! TTATAGAAGAGATGAGATTA+GGG + chr1_3:5102619-5102638 None:intergenic 25.0%
!! AATCAAGTTAGTTTCAATCA+TGG - chr1_3:5102665-5102684 Msa0099080:intron 25.0%
!!! GTTGATATCAAATGTTTTTG+TGG - chr1_3:5102789-5102808 Msa0099080:intron 25.0%
! AAAATTGTGGAGACATAATT+TGG + chr1_3:5102871-5102890 None:intergenic 25.0%
! TAAATAGTAGAGTAGTAAGA+TGG + chr1_3:5103050-5103069 None:intergenic 25.0%
! TCTTGTAAGTAAAACTTAGT+TGG + chr1_3:5103189-5103208 None:intergenic 25.0%
! TATGTTAGACTTTATCGTAA+CGG + chr1_3:5103360-5103379 None:intergenic 25.0%
! ATAAAAACTATCGTGATACT+AGG - chr1_3:5103698-5103717 Msa0099080:intron 25.0%
! TAAAAACTATCGTGATACTA+GGG - chr1_3:5103699-5103718 Msa0099080:intron 25.0%
! CAAACATTTCAAATTTCCAA+TGG - chr1_3:5103843-5103862 Msa0099080:intron 25.0%
! TTATTCGAATATAAAGGATG+TGG - chr1_3:5104525-5104544 Msa0099080:intron 25.0%
! TTCTTGTCATTATCAGATTA+TGG - chr1_3:5104692-5104711 Msa0099080:intron 25.0%
! TTTGAAGAGACAACAAAAAA+TGG + chr1_3:5104861-5104880 None:intergenic 25.0%
! CAAAAGTTCTATCTTTCTAT+TGG + chr1_3:5105059-5105078 None:intergenic 25.0%
!! CAATAGAAAGATAGAACTTT+TGG - chr1_3:5105057-5105076 Msa0099080:intron 25.0%
! CAAATTAAATTTCTCGGAAT+CGG + chr1_3:5105520-5105539 None:intergenic 25.0%
!! GATTCCGAGAAATTTAATTT+GGG - chr1_3:5105519-5105538 Msa0099080:intron 25.0%
!! TCCTAATATTTTTCTGTCAT+TGG - chr1_3:5105584-5105603 Msa0099080:intron 25.0%
! TATAATTGGAACTTATATGG+TGG - chr1_3:5106049-5106068 Msa0099080:intron 25.0%
! AGATGCGAAATTTATTTAGT+AGG + chr1_3:5106096-5106115 None:intergenic 25.0%
!!! AACTGATTTGTGATAAGATT+TGG + chr1_3:5106231-5106250 None:intergenic 25.0%
!! CGAATGTTATTTGAAATCTA+TGG + chr1_3:5106319-5106338 None:intergenic 25.0%
! CATAAACAATTTAAACTTGG+AGG - chr1_3:5106435-5106454 Msa0099080:intron 25.0%
! AACTCATTATATTGTCTTCT+AGG - chr1_3:5106540-5106559 Msa0099080:intron 25.0%
! ACTCATTATATTGTCTTCTA+GGG - chr1_3:5106541-5106560 Msa0099080:intron 25.0%
! ACTTATAAGGGATATTTCAA+TGG - chr1_3:5106755-5106774 Msa0099080:intron 25.0%
! TCAAAATCTGTTACATTATG+AGG + chr1_3:5106802-5106821 None:intergenic 25.0%
! TAATGTTTGTCAGATATATC+TGG - chr1_3:5107131-5107150 Msa0099080:intron 25.0%
!! TTGACAAATACCTTTTCTTA+TGG - chr1_3:5107439-5107458 Msa0099080:intron 25.0%
!! AAATACCTTTTCTTATGGTA+GGG - chr1_3:5107444-5107463 Msa0099080:intron 25.0%
!!! GATGGATTATAGTATTTAGA+CGG + chr1_3:5107488-5107507 None:intergenic 25.0%
! ACTTGATATATACTGAAACA+GGG - chr1_3:5107631-5107650 Msa0099080:intron 25.0%
! TATCAAGGTTAATAATGACA+AGG - chr1_3:5107807-5107826 Msa0099080:intron 25.0%
! TGTAAGGATTGATTAAAATG+AGG + chr1_3:5107924-5107943 None:intergenic 25.0%
!!! GTATGTCCTTTTTATTTGTA+AGG + chr1_3:5107940-5107959 None:intergenic 25.0%
! AACAGACAATGTACAATTAT+TGG + chr1_3:5107981-5108000 None:intergenic 25.0%
!! TTTTATCAATAATGCTGTCT+TGG + chr1_3:5108304-5108323 None:intergenic 25.0%
! TCATTATACCATAACACATA+AGG - chr1_3:5108772-5108791 Msa0099080:intron 25.0%
! TGAGTGAAGTTAAAATTGTA+CGG - chr1_3:5108920-5108939 Msa0099080:intron 25.0%
! TTAAAATGAGTTACTCCATT+TGG + chr1_3:5109048-5109067 None:intergenic 25.0%
!! TCTTTCTATTCATCAAGTTT+TGG + chr1_3:5109090-5109109 None:intergenic 25.0%
! TTTGAACCATTTCAACATTT+CGG + chr1_3:5110053-5110072 None:intergenic 25.0%
!! CAATTTTTACACCACAAAAA+TGG - chr1_3:5110446-5110465 Msa0099080:intron 25.0%
!!! CTGTTTTTAAAATAACGGTT+CGG - chr1_3:5110584-5110603 Msa0099080:intron 25.0%
! AATTAACTGAACCATTACAT+TGG + chr1_3:5110618-5110637 None:intergenic 25.0%
!!! TGGTTCAGTTAATTTTAGTT+TGG - chr1_3:5110624-5110643 Msa0099080:intron 25.0%
!!! CAGTTAATTTTAGTTTGGTT+TGG - chr1_3:5110629-5110648 Msa0099080:intron 25.0%
!!! AATTTTAGTTTGGTTTGGTT+CGG - chr1_3:5110634-5110653 Msa0099080:intron 25.0%
! AAATTTGGAAACGTTTCTTT+AGG + chr1_3:5110705-5110724 None:intergenic 25.0%
! ATAAGCAAACATTGGAAATT+TGG + chr1_3:5110720-5110739 None:intergenic 25.0%
!!! CATTTGTTTAGTTCTAATTC+TGG - chr1_3:5110978-5110997 Msa0099080:intron 25.0%
! TTTGTGAAAATGTGGATTTA+AGG + chr1_3:5111159-5111178 None:intergenic 25.0%
! TAGATGTATTTGTGAAAATG+TGG + chr1_3:5111167-5111186 None:intergenic 25.0%
! TCAAAAAAGAAAAAACAAGG+AGG + chr1_3:5111503-5111522 None:intergenic 25.0%
! TTTAATATTTGGATACTCTC+CGG + chr1_3:5111651-5111670 None:intergenic 25.0%
!! TTTCCCTTTCTAAGAAATTA+GGG - chr1_3:5111880-5111899 Msa0099080:intron 25.0%
! AAACCCTAATTTCTTAGAAA+GGG + chr1_3:5111886-5111905 None:intergenic 25.0%
! AATATTGACGATTAAGAGAA+TGG + chr1_3:5112009-5112028 None:intergenic 25.0%
! TCAAAAATCAAGATACGATA+CGG + chr1_3:5112160-5112179 None:intergenic 25.0%
! TGTTATCTTAAAAACGGAAT+TGG + chr1_3:5112258-5112277 None:intergenic 25.0%
! TAACCAAATGATTTATCTGT+GGG + chr1_3:5112602-5112621 None:intergenic 25.0%
! TACGAGTTTAGATAGTTAAT+GGG + chr1_3:5112839-5112858 None:intergenic 25.0%
! ATACGAGTTTAGATAGTTAA+TGG + chr1_3:5112840-5112859 None:intergenic 25.0%
! TGTATAAATAAAGGGGAAAA+TGG - chr1_3:5113396-5113415 Msa0099080:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr1_3:5113521-5113540 Msa0099080:intron 25.0%
!!! TTTTTTAGCAAAGACATTGA+TGG - chr1_3:5113632-5113651 Msa0099080:intron 25.0%
! TCCTTGACTCAAATAATTAT+CGG + chr1_3:5113865-5113884 None:intergenic 25.0%
! TCATTAATGAGATTCAACTA+AGG + chr1_3:5113917-5113936 None:intergenic 25.0%
! TTTCGAAACAATAATGATAG+GGG - chr1_3:5114198-5114217 Msa0099080:intron 25.0%
!!! CCTCTCATTTTTTTTTTTGA+AGG + chr1_3:5114224-5114243 None:intergenic 25.0%
! CCTTCAAAAAAAAAAATGAG+AGG - chr1_3:5114221-5114240 Msa0099080:intron 25.0%
! TTCTGATATTCTAATGAATG+TGG + chr1_3:5114305-5114324 None:intergenic 25.0%
! AAGACTACATACATCATTTA+AGG + chr1_3:5114496-5114515 None:intergenic 25.0%
! AAATGAGAAACTAATGATTG+TGG + chr1_3:5114709-5114728 None:intergenic 25.0%
!!! GAAAGAACCATATTTTTACT+TGG + chr1_3:5114785-5114804 None:intergenic 25.0%
!! AATTTAAAGGCGAAGATTTT+GGG - chr1_3:5114830-5114849 Msa0099080:intron 25.0%
!! ATTTTGTGAATACATTAGGT+GGG + chr1_3:5115192-5115211 None:intergenic 25.0%
! AGAATGAATGAATGAAAGAA+GGG + chr1_3:5115278-5115297 None:intergenic 25.0%
! AAGAATGAATGAATGAAAGA+AGG + chr1_3:5115279-5115298 None:intergenic 25.0%
! AAGTTCTTGTAATGAAATGT+AGG + chr1_3:5115358-5115377 None:intergenic 25.0%
!!! TGAATTTTGATTCTTTTGCT+AGG - chr1_3:5116045-5116064 Msa0099080:CDS 25.0%
! AAAAGTTCCATCTTTCTATT+AGG + chr1_3:5116176-5116195 None:intergenic 25.0%
!! AATAGAAAGATGGAACTTTT+AGG - chr1_3:5116176-5116195 Msa0099080:intron 25.0%
!! ATAGAAAGATGGAACTTTTA+GGG - chr1_3:5116177-5116196 Msa0099080:intron 25.0%
AAAAAAATTATACCGCTGAG+AGG - chr1_3:5098118-5098137 Msa0099080:CDS 30.0%
!! TGGTTGATTTTCAACTGTTA+TGG - chr1_3:5098207-5098226 Msa0099080:CDS 30.0%
!! CATGGTTGATTTGTGAAATT+AGG + chr1_3:5098390-5098409 None:intergenic 30.0%
TAAAGGGTTGAATGATCTAT+AGG - chr1_3:5098616-5098635 Msa0099080:CDS 30.0%
CAGAACATAATAGAAGAAAG+CGG - chr1_3:5099004-5099023 Msa0099080:CDS 30.0%
AGAACATAATAGAAGAAAGC+GGG - chr1_3:5099005-5099024 Msa0099080:CDS 30.0%
!! GGAGTGTTTTCAAATTTCAA+TGG + chr1_3:5099190-5099209 None:intergenic 30.0%
!! ATTATGTTCTCTTAGTCTTG+GGG + chr1_3:5099229-5099248 None:intergenic 30.0%
!! TTAGTTTGTTCAATCCCATT+TGG - chr1_3:5099252-5099271 Msa0099080:CDS 30.0%
!! ATTATGTTCTCTTAGTCTTG+GGG + chr1_3:5099229-5099248 None:intergenic 30.0%
!! TTAGTTTGTTCAATCCCATT+TGG - chr1_3:5099252-5099271 Msa0099080:CDS 30.0%
ACAGATATATATTGAGGGAT+TGG + chr1_3:5099521-5099540 None:intergenic 30.0%
AACTGATCTGTGATAAGATT+TGG + chr1_3:5099602-5099621 None:intergenic 30.0%
GCAATTCTAAATTGGAGATA+AGG - chr1_3:5099818-5099837 Msa0099080:intron 30.0%
TAACTACATATTTCTCCTCA+CGG + chr1_3:5100015-5100034 None:intergenic 30.0%
TATGTAGTTACTGCAATTGT+TGG - chr1_3:5100025-5100044 Msa0099080:intron 30.0%
AGAACAGTGTTGTCAAATAT+TGG - chr1_3:5100294-5100313 Msa0099080:intron 30.0%
!!! GGATTTTTTTACAACCATCA+TGG - chr1_3:5100337-5100356 Msa0099080:intron 30.0%
!! GGCATTTTATGGTTGATATT+TGG - chr1_3:5100358-5100377 Msa0099080:intron 30.0%
TTCTATAACAGTGTTATCGA+TGG + chr1_3:5100391-5100410 None:intergenic 30.0%
AAGCATAGTGTAGATATGTA+TGG - chr1_3:5100500-5100519 Msa0099080:intron 30.0%
TGTAGATATGTATGGAGTAT+TGG - chr1_3:5100508-5100527 Msa0099080:intron 30.0%
!! TTGGTATAGCTTTGATCTAT+AGG - chr1_3:5100576-5100595 Msa0099080:intron 30.0%
!! ATAGCTTTGATCTATAGGTA+TGG - chr1_3:5100581-5100600 Msa0099080:intron 30.0%
ATGGAAAACTGTCTGATATA+TGG - chr1_3:5100604-5100623 Msa0099080:intron 30.0%
AAAACTGTCTGATATATGGT+TGG - chr1_3:5100608-5100627 Msa0099080:intron 30.0%
AAACTGTCTGATATATGGTT+GGG - chr1_3:5100609-5100628 Msa0099080:intron 30.0%
!! ACAATTGTGTACAGTTTTAG+TGG - chr1_3:5100733-5100752 Msa0099080:intron 30.0%
CATACAGTTGTCAATATATC+TGG - chr1_3:5100935-5100954 Msa0099080:intron 30.0%
ATACAAAGGATCAAACAAGA+TGG - chr1_3:5101007-5101026 Msa0099080:intron 30.0%
TCCCCAAATAATAGATGAAT+AGG + chr1_3:5101099-5101118 None:intergenic 30.0%
! ACATAAAGTCAAAGTGTTCA+TGG + chr1_3:5101178-5101197 None:intergenic 30.0%
! GTTCCGATAATCTCTATTTT+TGG - chr1_3:5101232-5101251 Msa0099080:intron 30.0%
!!! TCTCTATTTTTGGCATTGAA+TGG - chr1_3:5101242-5101261 Msa0099080:intron 30.0%
AGTACATTGATAAGAAACGA+AGG + chr1_3:5101389-5101408 None:intergenic 30.0%
!! ATACACCTTTTCTTGTTGTA+GGG - chr1_3:5101434-5101453 Msa0099080:intron 30.0%
!! GATTTTTAAGCATGCAAGAT+GGG + chr1_3:5101515-5101534 None:intergenic 30.0%
! AACCTTACCTGCAATTTTTA+GGG + chr1_3:5101537-5101556 None:intergenic 30.0%
! AAACCTTACCTGCAATTTTT+AGG + chr1_3:5101538-5101557 None:intergenic 30.0%
TCTTCACATTTGATTCAAAC+AGG - chr1_3:5101617-5101636 Msa0099080:intron 30.0%
CTTCACATTTGATTCAAACA+GGG - chr1_3:5101618-5101637 Msa0099080:intron 30.0%
! TGAATTGACAAGCTTAGTTT+TGG - chr1_3:5101771-5101790 Msa0099080:intron 30.0%
!! GAATTGACAAGCTTAGTTTT+GGG - chr1_3:5101772-5101791 Msa0099080:intron 30.0%
!! CTCCATTTTTATTTGTCAGT+AGG + chr1_3:5101931-5101950 None:intergenic 30.0%
!!! AGTAACTCACTTTTTCAACA+AGG - chr1_3:5102163-5102182 Msa0099080:intron 30.0%
TAACGACTTATATTGTCTGA+CGG - chr1_3:5102201-5102220 Msa0099080:intron 30.0%
! AAATAGTTAATTTGGTCCCT+AGG - chr1_3:5102361-5102380 Msa0099080:intron 30.0%
TAACAGAGAGACTAAATAGT+TGG + chr1_3:5102459-5102478 None:intergenic 30.0%
GTTATAGAAGAGATGAGATT+AGG + chr1_3:5102620-5102639 None:intergenic 30.0%
ACAATTACATGTGTCAATCT+AGG - chr1_3:5102830-5102849 Msa0099080:intron 30.0%
TTAGTCGTTGAGAAAAATTG+TGG + chr1_3:5102884-5102903 None:intergenic 30.0%
ATACTTTGCACATTCTTTCA+AGG - chr1_3:5103604-5103623 Msa0099080:intron 30.0%
TTCAATATTCTGTTTGAGCA+TGG - chr1_3:5103731-5103750 Msa0099080:intron 30.0%
AATTAGAAGTGGCAAACAAA+TGG + chr1_3:5103814-5103833 None:intergenic 30.0%
GAAGTCATATTCTAATCAGA+GGG + chr1_3:5103981-5104000 None:intergenic 30.0%
TGAAGTCATATTCTAATCAG+AGG + chr1_3:5103982-5104001 None:intergenic 30.0%
CTGATTAGAATATGACTTCA+AGG - chr1_3:5103982-5104001 Msa0099080:intron 30.0%
TCTCTTCTTTCTATGTAGAA+TGG - chr1_3:5104182-5104201 Msa0099080:intron 30.0%
ATGGGGTTATTCGAATATAA+AGG - chr1_3:5104519-5104538 Msa0099080:intron 30.0%
CAGAAAGAAAATTTCCAGAA+AGG + chr1_3:5104749-5104768 None:intergenic 30.0%
!! CTTTCTGGAAATTTTCTTTC+TGG - chr1_3:5104747-5104766 Msa0099080:intron 30.0%
!! TTTTCTTTCTGGTATAAGCA+TGG - chr1_3:5104758-5104777 Msa0099080:intron 30.0%
AATCAAGACTATTACAAGCA+AGG + chr1_3:5104815-5104834 None:intergenic 30.0%
ATGGTAAATGTTGAAGATCA+GGG + chr1_3:5104842-5104861 None:intergenic 30.0%
AATGGTAAATGTTGAAGATC+AGG + chr1_3:5104843-5104862 None:intergenic 30.0%
!!! TCACTTCTTGTTTTCATGAT+AGG - chr1_3:5104895-5104914 Msa0099080:intron 30.0%
! TGAACTTTGATTCTTTTGCT+AGG - chr1_3:5104922-5104941 Msa0099080:intron 30.0%
TTATTATCCTGGTATGTGTT+TGG - chr1_3:5104976-5104995 Msa0099080:intron 30.0%
! TTTTCTTGCTACTGTCTAAT+AGG - chr1_3:5105026-5105045 Msa0099080:intron 30.0%
GTAAACAAGAAACCAACAAA+GGG + chr1_3:5105108-5105127 None:intergenic 30.0%
! TGGTTTCTTGTTTACCTAAT+TGG - chr1_3:5105113-5105132 Msa0099080:intron 30.0%
! GGTTTCTTGTTTACCTAATT+GGG - chr1_3:5105114-5105133 Msa0099080:intron 30.0%
! GTTTCTTGTTTACCTAATTG+GGG - chr1_3:5105115-5105134 Msa0099080:intron 30.0%
! TTTTCTGCAAGTGTCTATAT+TGG - chr1_3:5105211-5105230 Msa0099080:intron 30.0%
CGATTCCGAGAAATTTAATT+TGG - chr1_3:5105518-5105537 Msa0099080:intron 30.0%
GCTTCCCAAATTAAATTTCT+CGG + chr1_3:5105526-5105545 None:intergenic 30.0%
GCCAATGACAGAAAAATATT+AGG + chr1_3:5105588-5105607 None:intergenic 30.0%
! TTTTTCTGTCATTGGCATTT+TGG - chr1_3:5105592-5105611 Msa0099080:intron 30.0%
!! ATTGGCATTTTGGTAATCAT+TGG - chr1_3:5105602-5105621 Msa0099080:intron 30.0%
TTTCTTACCTATCTCTTGAA+AGG + chr1_3:5105673-5105692 None:intergenic 30.0%
AAGAAAGAAACTACTGATAC+TGG - chr1_3:5105687-5105706 Msa0099080:intron 30.0%
TAACAATTTGTGTTATGCCT+TGG - chr1_3:5105833-5105852 Msa0099080:intron 30.0%
!!! GTTTTTTTCTTTCCATTTCC+TGG - chr1_3:5105925-5105944 Msa0099080:intron 30.0%
AATAACATTCGTTCCATTCA+TGG - chr1_3:5106328-5106347 Msa0099080:intron 30.0%
AAATAGAAGTAAGCCATGAA+TGG + chr1_3:5106344-5106363 None:intergenic 30.0%
ACAATTTAAACTTGGAGGTA+AGG - chr1_3:5106440-5106459 Msa0099080:intron 30.0%
TTGGAGGTAAGGTAATATAA+GGG - chr1_3:5106451-5106470 Msa0099080:intron 30.0%
!!! CAATTTTTTGGTCGTAGTAA+AGG - chr1_3:5106666-5106685 Msa0099080:intron 30.0%
ACTGAACAGACAACTTATAA+GGG - chr1_3:5106743-5106762 Msa0099080:intron 30.0%
!!! TTTTTTGCTGAGAAGAACTA+TGG - chr1_3:5106971-5106990 Msa0099080:CDS 30.0%
!!! TGGGTGAATTGTTTTTACAA+AGG - chr1_3:5107189-5107208 Msa0099080:intron 30.0%
TGTCTATCATCTATCATTTG+TGG - chr1_3:5107275-5107294 Msa0099080:intron 30.0%
TTACACAAATCAGCATATCT+TGG - chr1_3:5107299-5107318 Msa0099080:intron 30.0%
! CAAATACCTTTTCTTATGGT+AGG - chr1_3:5107443-5107462 Msa0099080:intron 30.0%
CACTTGATATATACTGAAAC+AGG - chr1_3:5107630-5107649 Msa0099080:intron 30.0%
CTTAGTTGTGGAATTTATCA+AGG - chr1_3:5107792-5107811 Msa0099080:intron 30.0%
! TTAATGTCAGATTGATAACC+TGG + chr1_3:5108090-5108109 None:intergenic 30.0%
! GTAGGTCTCATAATATTTTC+TGG + chr1_3:5108332-5108351 None:intergenic 30.0%
AATATGTTACTAAAAGCAGG+AGG - chr1_3:5108364-5108383 Msa0099080:intron 30.0%
ATATGTTACTAAAAGCAGGA+GGG - chr1_3:5108365-5108384 Msa0099080:intron 30.0%
TCCTAGATACTAAAAACTTG+AGG - chr1_3:5108407-5108426 Msa0099080:intron 30.0%
CCTAGATACTAAAAACTTGA+GGG - chr1_3:5108408-5108427 Msa0099080:intron 30.0%
CTAGATACTAAAAACTTGAG+GGG - chr1_3:5108409-5108428 Msa0099080:intron 30.0%
!!! ATCAAGTGATGTGTTTTTAG+AGG - chr1_3:5108456-5108475 Msa0099080:intron 30.0%
!!! TCAAGTGATGTGTTTTTAGA+GGG - chr1_3:5108457-5108476 Msa0099080:intron 30.0%
!! TTTGTTGTTACAAAGTTGAG+AGG - chr1_3:5108520-5108539 Msa0099080:intron 30.0%
ATAGAATGTGCAAAATTCTG+TGG + chr1_3:5108590-5108609 None:intergenic 30.0%
GTTGTGAATGAAATGAGTTA+AGG - chr1_3:5108848-5108867 Msa0099080:intron 30.0%
TGAATGAAATGAGTTAAGGA+TGG - chr1_3:5108852-5108871 Msa0099080:intron 30.0%
GAATGAAATGAGTTAAGGAT+GGG - chr1_3:5108853-5108872 Msa0099080:intron 30.0%
AATGAAATGAGTTAAGGATG+GGG - chr1_3:5108854-5108873 Msa0099080:intron 30.0%
AAAATTGTACGGAAAGAGAA+AGG - chr1_3:5108931-5108950 Msa0099080:intron 30.0%
TAATATGAGAGAAGTGAATG+TGG - chr1_3:5108968-5108987 Msa0099080:intron 30.0%
CTTCTTTCTAATTCTCCAAA+TGG - chr1_3:5109030-5109049 Msa0099080:intron 30.0%
TAGACATAAGCATCTTCATA+TGG - chr1_3:5109789-5109808 Msa0099080:intron 30.0%
TGAGCAACATAAAGTTAGAA+GGG + chr1_3:5109966-5109985 None:intergenic 30.0%
TTGAGCAACATAAAGTTAGA+AGG + chr1_3:5109967-5109986 None:intergenic 30.0%
TCAATATGTGCAAGAAACTT+AGG - chr1_3:5109983-5110002 Msa0099080:intron 30.0%
CAATATGTGCAAGAAACTTA+GGG - chr1_3:5109984-5110003 Msa0099080:intron 30.0%
AATATGTGCAAGAAACTTAG+GGG - chr1_3:5109985-5110004 Msa0099080:intron 30.0%
TTCAACATTTCGGTTCAATT+CGG + chr1_3:5110043-5110062 None:intergenic 30.0%
ATTGAACCGAAATGTTGAAA+TGG - chr1_3:5110044-5110063 Msa0099080:intron 30.0%
TAATCAAACCGAACCATTTA+AGG - chr1_3:5110074-5110093 Msa0099080:intron 30.0%
ATGGTTCAGTTAATTGAGTT+TGG - chr1_3:5110526-5110545 Msa0099080:intron 30.0%
TCAGTTAATTGAGTTTGGTT+CGG - chr1_3:5110531-5110550 Msa0099080:intron 30.0%
TGTGCATTATAAGCAAACAT+TGG + chr1_3:5110728-5110747 None:intergenic 30.0%
TTGCTTATAATGCACAATCT+TGG - chr1_3:5110732-5110751 Msa0099080:intron 30.0%
ATAGTGAATATGCTAGAACA+TGG + chr1_3:5110941-5110960 None:intergenic 30.0%
! ATTGTTCGCTGTCATAATTT+TGG - chr1_3:5111440-5111459 Msa0099080:intron 30.0%
ATGTAGTTTAAAGGTAAGAG+AGG + chr1_3:5111473-5111492 None:intergenic 30.0%
GGTAACAACATGTAGTTTAA+AGG + chr1_3:5111482-5111501 None:intergenic 30.0%
! CTTTCCCTTTCTAAGAAATT+AGG - chr1_3:5111879-5111898 Msa0099080:intron 30.0%
GAAACCCTAATTTCTTAGAA+AGG + chr1_3:5111887-5111906 None:intergenic 30.0%
!! TTCAACTTTTTCTTCCAAAG+TGG - chr1_3:5111904-5111923 Msa0099080:intron 30.0%
ATTAACAAACACAAGAAACC+AGG + chr1_3:5112060-5112079 None:intergenic 30.0%
! TTAAAAACGGAATTGGTGAT+AGG + chr1_3:5112251-5112270 None:intergenic 30.0%
TGATTTATCTGTGGGAATTA+GGG + chr1_3:5112594-5112613 None:intergenic 30.0%
ATGATTTATCTGTGGGAATT+AGG + chr1_3:5112595-5112614 None:intergenic 30.0%
ATTCCCACAGATAAATCATT+TGG - chr1_3:5112596-5112615 Msa0099080:intron 30.0%
CTAACCAAATGATTTATCTG+TGG + chr1_3:5112603-5112622 None:intergenic 30.0%
CACAGATAAATCATTTGGTT+AGG - chr1_3:5112601-5112620 Msa0099080:intron 30.0%
TTTGTGACTTACCTTTCAAA+TGG + chr1_3:5112665-5112684 None:intergenic 30.0%
TTGTGTCAATTAAATTGGGA+CGG + chr1_3:5113348-5113367 None:intergenic 30.0%
! TTGAAATGAGTCGGTTATTT+TGG - chr1_3:5113499-5113518 Msa0099080:intron 30.0%
!! TGAAATGAGTCGGTTATTTT+GGG - chr1_3:5113500-5113519 Msa0099080:intron 30.0%
ACCGATAATTATTTGAGTCA+AGG - chr1_3:5113861-5113880 Msa0099080:intron 30.0%
TTACATAAATATACACCCTC+CGG - chr1_3:5114432-5114451 Msa0099080:intron 30.0%
! CTTTTGCTTATATTAGTGAC+CGG + chr1_3:5114563-5114582 None:intergenic 30.0%
! CTTTTGCTTATATTAGTGAC+CGG - chr1_3:5114563-5114582 Msa0099080:intron 30.0%
ACACATGCCAAGTAAAAATA+TGG - chr1_3:5114775-5114794 Msa0099080:intron 30.0%
! GAATTTAAAGGCGAAGATTT+TGG - chr1_3:5114829-5114848 Msa0099080:intron 30.0%
! TTTTGTGAATACATTAGGTG+GGG + chr1_3:5115191-5115210 None:intergenic 30.0%
! GATTTTGTGAATACATTAGG+TGG + chr1_3:5115193-5115212 None:intergenic 30.0%
!!! TTGAGTTGTTTTTGTAGAGA+GGG + chr1_3:5115234-5115253 None:intergenic 30.0%
!!! TTTGAGTTGTTTTTGTAGAG+AGG + chr1_3:5115235-5115254 None:intergenic 30.0%
TCTTGTAATGAAATGTAGGT+TGG + chr1_3:5115354-5115373 None:intergenic 30.0%
ATGTTCTTTGTCAGTGTTTA+TGG - chr1_3:5115702-5115721 Msa0099080:intron 30.0%
ATTATCAGGTTATGGTTAAC+CGG - chr1_3:5115823-5115842 Msa0099080:intron 30.0%
AATGGTAAATGTTGAAGATC+AGG + chr1_3:5104843-5104862 None:intergenic 30.0%
TTCGACGAAACAACAAAAAA+TGG + chr1_3:5115984-5116003 None:intergenic 30.0%
!!! TCGCTTACTTCTTGTTTTTA+TGG - chr1_3:5116014-5116033 Msa0099080:CDS 30.0%
!! AAAAGTGCCTAATAGAAAGA+TGG - chr1_3:5116166-5116185 Msa0099080:intron 30.0%
GTAAACAAGAAACCAACAAA+GGG + chr1_3:5105108-5105127 None:intergenic 30.0%
! TGGTTTCTTGTTTACCTAAT+TGG - chr1_3:5105113-5105132 Msa0099080:intron 30.0%
! GGTTTCTTGTTTACCTAATT+GGG - chr1_3:5105114-5105133 Msa0099080:intron 30.0%
! GTTTCTTGTTTACCTAATTG+GGG - chr1_3:5105115-5105134 Msa0099080:intron 30.0%
TCTCAAACTCTCAAATGTGT+TGG - chr1_3:5098187-5098206 Msa0099080:CDS 35.0%
TCTCCTCTGTGTAACAAAAT+CGG + chr1_3:5098233-5098252 None:intergenic 35.0%
! CACAGTCTAATTAGGTTGTT+TGG - chr1_3:5098422-5098441 Msa0099080:CDS 35.0%
TTTCAACATGGATCATACTC+AGG + chr1_3:5098576-5098595 None:intergenic 35.0%
AGTATGATCCATGTTGAAAC+TGG - chr1_3:5098577-5098596 Msa0099080:CDS 35.0%
CTAATCAACCAGTTTCAACA+TGG + chr1_3:5098588-5098607 None:intergenic 35.0%
GGTTGAATGATCTATAGGAA+AGG - chr1_3:5098621-5098640 Msa0099080:CDS 35.0%
!! TACTCATTTTTCCTAAGCAG+AGG + chr1_3:5098731-5098750 None:intergenic 35.0%
GCAGCAACTTACAATGAATT+TGG - chr1_3:5098920-5098939 Msa0099080:CDS 35.0%
GCAACTTACAATGAATTTGG+AGG - chr1_3:5098923-5098942 Msa0099080:CDS 35.0%
! CTAAGAAAGTCGAAGGATTT+TGG - chr1_3:5099036-5099055 Msa0099080:CDS 35.0%
! CAGAACTTTGCTTTCTAAGA+AGG + chr1_3:5099388-5099407 None:intergenic 35.0%
TGTGATAAGATTTGGCATTC+AGG + chr1_3:5099594-5099613 None:intergenic 35.0%
!! GTATAGCTGTTTCTTTAAGG+AGG + chr1_3:5099646-5099665 None:intergenic 35.0%
!! GCAGTATAGCTGTTTCTTTA+AGG + chr1_3:5099649-5099668 None:intergenic 35.0%
ACTGGGAATGAAACTTATGA+AGG - chr1_3:5099749-5099768 Msa0099080:intron 35.0%
ATTGGAGATAAGGTCATCTA+AGG - chr1_3:5099828-5099847 Msa0099080:intron 35.0%
TTGGAGATAAGGTCATCTAA+GGG - chr1_3:5099829-5099848 Msa0099080:intron 35.0%
AGTGAAGGTTCATTTCAGTA+TGG - chr1_3:5099941-5099960 Msa0099080:intron 35.0%
GCAATTGTTGGTCATAGTAA+AGG - chr1_3:5100037-5100056 Msa0099080:intron 35.0%
ACTTATGAGGGATATTTCAG+TGG - chr1_3:5100126-5100145 Msa0099080:intron 35.0%
GTCCAACTTCTCTTAAAGAA+AGG - chr1_3:5100204-5100223 Msa0099080:intron 35.0%
! AGCCTTTCTTTAAGAGAAGT+TGG + chr1_3:5100209-5100228 None:intergenic 35.0%
! ACAACCATCATGGCATTTTA+TGG - chr1_3:5100347-5100366 Msa0099080:intron 35.0%
TCAACCATAAAATGCCATGA+TGG + chr1_3:5100354-5100373 None:intergenic 35.0%
TATAACAGTGTTATCGATGG+CGG + chr1_3:5100388-5100407 None:intergenic 35.0%
!! TCTTTTGAGAAACCATGTGA+TGG - chr1_3:5100467-5100486 Msa0099080:intron 35.0%
TTACTAACAATGCCATCACA+TGG + chr1_3:5100482-5100501 None:intergenic 35.0%
!! GATATGTATGGAGTATTGGA+TGG - chr1_3:5100512-5100531 Msa0099080:intron 35.0%
ATCAAAGCTATACCAAACTC+TGG + chr1_3:5100572-5100591 None:intergenic 35.0%
CTTTGATCTATAGGTATGGA+TGG - chr1_3:5100585-5100604 Msa0099080:intron 35.0%
GTTATTCACACTCACTATGA+TGG - chr1_3:5100859-5100878 Msa0099080:intron 35.0%
TTCCTCTTGCAAGGTTAAAT+CGG + chr1_3:5100961-5100980 None:intergenic 35.0%
ATTTAACCTTGCAAGAGGAA+TGG - chr1_3:5100961-5100980 Msa0099080:intron 35.0%
TTACACAAATCAGCATGTCT+TGG - chr1_3:5101119-5101138 Msa0099080:intron 35.0%
AAGCAACATATTGATGAGAG+AGG + chr1_3:5101271-5101290 None:intergenic 35.0%
GAAAAGGATGATGACAACAA+TGG + chr1_3:5101301-5101320 None:intergenic 35.0%
TAGTATAATGTAGCATCACG+AGG + chr1_3:5101329-5101348 None:intergenic 35.0%
!! CATACACCTTTTCTTGTTGT+AGG - chr1_3:5101433-5101452 Msa0099080:intron 35.0%
ATCTTCCCTACAACAAGAAA+AGG + chr1_3:5101442-5101461 None:intergenic 35.0%
GATGGGTAATAGTGTTTAGA+CGG + chr1_3:5101498-5101517 None:intergenic 35.0%
!! GGATTTTTAAGCATGCAAGA+TGG + chr1_3:5101516-5101535 None:intergenic 35.0%
ATCCCTAAAAATTGCAGGTA+AGG - chr1_3:5101532-5101551 Msa0099080:intron 35.0%
ATGAACTGCACATCATAGAA+GGG - chr1_3:5101719-5101738 Msa0099080:intron 35.0%
GATAGATTAAAACGAGGTAC+CGG + chr1_3:5101909-5101928 None:intergenic 35.0%
CAGTAGGATAGATTAAAACG+AGG + chr1_3:5101915-5101934 None:intergenic 35.0%
ATGAGAAACTTGGGCAATAT+TGG + chr1_3:5102033-5102052 None:intergenic 35.0%
TTGCCCAAGTTTCTCATTAT+TGG - chr1_3:5102036-5102055 Msa0099080:intron 35.0%
GGTCCAATAATGAGAAACTT+GGG + chr1_3:5102042-5102061 None:intergenic 35.0%
AGGTCCAATAATGAGAAACT+TGG + chr1_3:5102043-5102062 None:intergenic 35.0%
TGTCAGATTTGCAATTGTTC+AGG + chr1_3:5102063-5102082 None:intergenic 35.0%
AACGACTTATATTGTCTGAC+GGG - chr1_3:5102202-5102221 Msa0099080:intron 35.0%
CTAACACTTTCTCTCCAAAT+TGG - chr1_3:5102384-5102403 Msa0099080:intron 35.0%
AGAGAGACTAAATAGTTGGA+TGG + chr1_3:5102455-5102474 None:intergenic 35.0%
! AAGTTAGTTTCAATCATGGC+TGG - chr1_3:5102669-5102688 Msa0099080:intron 35.0%
TTACATGTGTCAATCTAGGA+AGG - chr1_3:5102834-5102853 Msa0099080:intron 35.0%
AACAAATGGAGCACATATCA+AGG + chr1_3:5103800-5103819 None:intergenic 35.0%
TGTTGCACTAGAATTAGAAG+TGG + chr1_3:5103825-5103844 None:intergenic 35.0%
GTTGTCTGTGAAGAAGATAA+GGG + chr1_3:5103903-5103922 None:intergenic 35.0%
AGTTGTCTGTGAAGAAGATA+AGG + chr1_3:5103904-5103923 None:intergenic 35.0%
GATCAGTCACAAAAATGTGA+AGG - chr1_3:5104004-5104023 Msa0099080:intron 35.0%
TAGAGAAAATGTAGTGTGCA+TGG + chr1_3:5104111-5104130 None:intergenic 35.0%
CTCTACTTACCTCTACAAAA+AGG - chr1_3:5104126-5104145 Msa0099080:intron 35.0%
TCTTGCAATGAAATGTAGGT+TGG + chr1_3:5104231-5104250 None:intergenic 35.0%
GAGTTCTTGCAATGAAATGT+AGG + chr1_3:5104235-5104254 None:intergenic 35.0%
ATATTCGAATAACCCCATCT+CGG + chr1_3:5104517-5104536 None:intergenic 35.0%
GAACAAACCAGTTCCAATTA+CGG + chr1_3:5104722-5104741 None:intergenic 35.0%
! TGATTCTTTTGCTAGGTTCT+TGG - chr1_3:5104929-5104948 Msa0099080:intron 35.0%
TAATAACTCCAATGCTATGC+TGG + chr1_3:5104962-5104981 None:intergenic 35.0%
! TAGCATTGGAGTTATTATCC+TGG - chr1_3:5104965-5104984 Msa0099080:intron 35.0%
!!! TTTTGGGTTTGCTTGTGTTT+TGG - chr1_3:5105074-5105093 Msa0099080:intron 35.0%
!! GTTTGCTTGTGTTTTGGATT+TGG - chr1_3:5105080-5105099 Msa0099080:intron 35.0%
GGTAAACAAGAAACCAACAA+AGG + chr1_3:5105109-5105128 None:intergenic 35.0%
!!! ATTGCTAGTTTTTCTGTGAC+TGG - chr1_3:5105157-5105176 Msa0099080:intron 35.0%
TCAAACCAATCATGAGATGT+TGG + chr1_3:5105241-5105260 None:intergenic 35.0%
AAGACACGCAATTATAAGGA+AGG + chr1_3:5105426-5105445 None:intergenic 35.0%
CAGAAAGACACGCAATTATA+AGG + chr1_3:5105430-5105449 None:intergenic 35.0%
CTTATAATTGCGTGTCTTTC+TGG - chr1_3:5105428-5105447 Msa0099080:intron 35.0%
!! TTTGGTAATCATTGGCTTTG+AGG - chr1_3:5105610-5105629 Msa0099080:intron 35.0%
GTGATTTCCTTTCAAGAGAT+AGG - chr1_3:5105663-5105682 Msa0099080:intron 35.0%
TCATCTTCATTGTTGAAGTG+TGG - chr1_3:5105743-5105762 Msa0099080:intron 35.0%
CATCTTCATTGTTGAAGTGT+GGG - chr1_3:5105744-5105763 Msa0099080:intron 35.0%
TGCTGAAATATCATGCTTCT+AGG - chr1_3:5106006-5106025 Msa0099080:intron 35.0%
TAAACTGATGAAGCCTCATT+CGG - chr1_3:5106380-5106399 Msa0099080:intron 35.0%
CTTGGAGGTAAGGTAATATA+AGG - chr1_3:5106450-5106469 Msa0099080:intron 35.0%
GACTGAACAGACAACTTATA+AGG - chr1_3:5106742-5106761 Msa0099080:intron 35.0%
AGACTTTATTAAAGGGAAGG+TGG + chr1_3:5106840-5106859 None:intergenic 35.0%
GAGAGACTTTATTAAAGGGA+AGG + chr1_3:5106843-5106862 None:intergenic 35.0%
GACTGTATGTCTTATAGACT+CGG - chr1_3:5106914-5106933 Msa0099080:CDS 35.0%
! GACTCGGTATAATTATCACA+AGG - chr1_3:5106930-5106949 Msa0099080:CDS 35.0%
AAAGCATGTGATGGTATTGT+TGG - chr1_3:5107043-5107062 Msa0099080:CDS 35.0%
TATTGACATGTCTCGAGTAT+TGG - chr1_3:5107075-5107094 Msa0099080:intron 35.0%
ATTGACATGTCTCGAGTATT+GGG - chr1_3:5107076-5107095 Msa0099080:intron 35.0%
ATCTTCCCTACCATAAGAAA+AGG + chr1_3:5107452-5107471 None:intergenic 35.0%
GTAGGGAAGATTACGTATAA+TGG - chr1_3:5107461-5107480 Msa0099080:intron 35.0%
AATTACAGGGATTGATAAGC+AGG + chr1_3:5107514-5107533 None:intergenic 35.0%
TTATCAATCCCTGTAATTGC+TGG - chr1_3:5107516-5107535 Msa0099080:intron 35.0%
!! AAACTCTAAAGCATCTTCTG+CGG + chr1_3:5101680-5101699 None:intergenic 35.0%
ATAAACTGCGCATCATAGAA+GGG - chr1_3:5107728-5107747 Msa0099080:intron 35.0%
TGAATTGACAAGCTTAGTTG+TGG - chr1_3:5107780-5107799 Msa0099080:intron 35.0%
GAGATAAACCTTTCCATTCA+CGG - chr1_3:5107866-5107885 Msa0099080:intron 35.0%
ATGAGAAGCTAGGACAATAT+TGG + chr1_3:5108016-5108035 None:intergenic 35.0%
!!! CCAAGATCAATTGTTTTGGT+AGG + chr1_3:5108245-5108264 None:intergenic 35.0%
CCTACCAAAACAATTGATCT+TGG - chr1_3:5108242-5108261 Msa0099080:intron 35.0%
! GCTTCCAAGATCAATTGTTT+TGG + chr1_3:5108249-5108268 None:intergenic 35.0%
AACAATTGATCTTGGAAGCA+AGG - chr1_3:5108250-5108269 Msa0099080:intron 35.0%
TATGTTACTAAAAGCAGGAG+GGG - chr1_3:5108366-5108385 Msa0099080:intron 35.0%
!!! CCCTCAAGTTTTTAGTATCT+AGG + chr1_3:5108411-5108430 None:intergenic 35.0%
!!! CAAGTGATGTGTTTTTAGAG+GGG - chr1_3:5108458-5108477 Msa0099080:intron 35.0%
ACAGTCAGCTTTCAATCTAA+GGG + chr1_3:5108496-5108515 None:intergenic 35.0%
AACAGTCAGCTTTCAATCTA+AGG + chr1_3:5108497-5108516 None:intergenic 35.0%
!!! TCACTTTTTGTGGCAGTATT+AGG - chr1_3:5108804-5108823 Msa0099080:intron 35.0%
!! CACTTTTTGTGGCAGTATTA+GGG - chr1_3:5108805-5108824 Msa0099080:intron 35.0%
GGCAAAATGTGAAGCTAAAA+AGG - chr1_3:5108875-5108894 Msa0099080:intron 35.0%
AGACAAAGAGAGCAACATAT+AGG + chr1_3:5109125-5109144 None:intergenic 35.0%
CAAGATCCAAACAAAAAGTG+AGG - chr1_3:5109750-5109769 Msa0099080:intron 35.0%
! TACACTTTTGTCGTGATACT+AGG - chr1_3:5109825-5109844 Msa0099080:intron 35.0%
! AACGGATTCAACTTTCTGTT+GGG - chr1_3:5109852-5109871 Msa0099080:intron 35.0%
GAGCAACATAAAGTTAGAAG+GGG + chr1_3:5109965-5109984 None:intergenic 35.0%
!! TCAATTCGGTTCGGTTAATA+TGG + chr1_3:5110029-5110048 None:intergenic 35.0%
! AAACCGAACCATTTAAGGTT+TGG - chr1_3:5110079-5110098 Msa0099080:intron 35.0%
GTTCCAAACCTTAAATGGTT+CGG + chr1_3:5110085-5110104 None:intergenic 35.0%
! GGTTAGTTCCAAACCTTAAA+TGG + chr1_3:5110090-5110109 None:intergenic 35.0%
! ACCATACATTTGGTTCAGTT+CGG + chr1_3:5110111-5110130 None:intergenic 35.0%
ACTGAACCAAATGTATGGTT+CGG - chr1_3:5110112-5110131 Msa0099080:intron 35.0%
TCGGTTAATAGCCAAACAAA+CGG + chr1_3:5110142-5110161 None:intergenic 35.0%
!! TTAATTGGTTCGCTTCGATT+CGG + chr1_3:5110161-5110180 None:intergenic 35.0%
!!! TTATGCTCATGCCATTTTTG+TGG + chr1_3:5110460-5110479 None:intergenic 35.0%
!! TAATTGAGTTTGGTTCGGTT+CGG - chr1_3:5110536-5110555 Msa0099080:intron 35.0%
AGTTCATTAACTGAACCGAA+CGG + chr1_3:5110566-5110585 None:intergenic 35.0%
CGGTTCAATAACCAATGTAA+TGG - chr1_3:5110604-5110623 Msa0099080:intron 35.0%
CTTATAATGCACAATCTTGG+TGG - chr1_3:5110735-5110754 Msa0099080:intron 35.0%
! GTTGTCTCTGAAGAAGATAA+GGG + chr1_3:5111298-5111317 None:intergenic 35.0%
! AGTTGTCTCTGAAGAAGATA+AGG + chr1_3:5111299-5111318 None:intergenic 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG + chr1_3:5111571-5111590 None:intergenic 35.0%
GAAAGATGCAATTGTTTGTG+TGG + chr1_3:5111864-5111883 None:intergenic 35.0%
TCTCTAAATGGCCATTTGAA+AGG - chr1_3:5112651-5112670 Msa0099080:intron 35.0%
AGGTAAGTCACAAAAATGTG+AGG - chr1_3:5112671-5112690 Msa0099080:intron 35.0%
AAACAATTACCTCGAGGATT+GGG + chr1_3:5113179-5113198 None:intergenic 35.0%
TAAACAATTACCTCGAGGAT+TGG + chr1_3:5113180-5113199 None:intergenic 35.0%
AGTAGTAAACAATTACCTCG+AGG + chr1_3:5113185-5113204 None:intergenic 35.0%
!! CTCTTCAACTTTGAGGTATT+TGG + chr1_3:5114956-5114975 None:intergenic 35.0%
AGTTTGTCTCTTCAACTTTG+AGG + chr1_3:5114963-5114982 None:intergenic 35.0%
TAACTCGATTGATGAGCTAA+AGG + chr1_3:5115016-5115035 None:intergenic 35.0%
TCTAACCTATACCTACACAA+TGG - chr1_3:5115302-5115321 Msa0099080:intron 35.0%
TGTTACCATTGTGTAGGTAT+AGG + chr1_3:5115310-5115329 None:intergenic 35.0%
AGTTTGTGTTACCATTGTGT+AGG + chr1_3:5115316-5115335 None:intergenic 35.0%
!!! ATGTAGGTTGGTTTTAGCAA+CGG + chr1_3:5115342-5115361 None:intergenic 35.0%
AGATCTACGACGTTTCAAAA+TGG - chr1_3:5115424-5115443 Msa0099080:intron 35.0%
GATCTACGACGTTTCAAAAT+GGG - chr1_3:5115425-5115444 Msa0099080:intron 35.0%
! TTTGGTTAGTTCGGAGAAAA+GGG + chr1_3:5115622-5115641 None:intergenic 35.0%
TTGTTCGAAGAAAAAGGACA+CGG - chr1_3:5115648-5115667 Msa0099080:intron 35.0%
TTCTTTGGATTCAAAGTGGT+TGG - chr1_3:5115781-5115800 Msa0099080:intron 35.0%
TCATGATTCTGGTCATTATC+AGG - chr1_3:5115809-5115828 Msa0099080:intron 35.0%
TTCTGGTCATTATCAGGTTA+TGG - chr1_3:5115815-5115834 Msa0099080:intron 35.0%
! GCATAAACTGATTCCATTTC+CGG + chr1_3:5115845-5115864 None:intergenic 35.0%
CAGTTTATGCAGATTCTTTC+TGG - chr1_3:5115855-5115874 Msa0099080:intron 35.0%
!! TTGCTGGTATAAGCATTGAA+TGG - chr1_3:5115886-5115905 Msa0099080:intron 35.0%
!! TAAGCATTGAATGGTGGAAA+TGG - chr1_3:5115895-5115914 Msa0099080:intron 35.0%
CAAGACTATTACAAGCAAGA+TGG + chr1_3:5115935-5115954 None:intergenic 35.0%
! TGATTCTTTTGCTAGGTTCT+TGG - chr1_3:5104929-5104948 Msa0099080:intron 35.0%
!!! AAAGATGGAACTTTTAGGGT+TGG - chr1_3:5116181-5116200 Msa0099080:intron 35.0%
GGTAAACAAGAAACCAACAA+AGG + chr1_3:5105109-5105128 None:intergenic 35.0%
!!! TTGCTAGTTTTTGTGTGACT+GGG - chr1_3:5116276-5116295 Msa0099080:intron 35.0%
! TTTTCGGCTAGTGTTTATGT+TGG - chr1_3:5116329-5116348 Msa0099080:intron 35.0%
! TTGATGTGAAGTGTTCTTCT+TGG - chr1_3:5116399-5116418 Msa0099080:CDS 35.0%
AAGACACACAATTGTAAGGA+AGG + chr1_3:5116544-5116563 None:intergenic 35.0%
CAGAAAGACACACAATTGTA+AGG + chr1_3:5116548-5116567 None:intergenic 35.0%
CTTACAATTGTGTGTCTTTC+TGG - chr1_3:5116546-5116565 Msa0099080:five_prime_UTR 35.0%
TGCTTACTATTCAGACTTTG+AGG - chr1_3:5116579-5116598 Msa0099080:five_prime_UTR 35.0%
! TATTCAGACTTTGAGGAATG+CGG - chr1_3:5116586-5116605 Msa0099080:five_prime_UTR 35.0%
CAAACTAAATTTCTCGGAAC+CGG + chr1_3:5116638-5116657 None:intergenic 35.0%
! GGTTCCGAGAAATTTAGTTT+GGG - chr1_3:5116637-5116656 Msa0099080:five_prime_UTR 35.0%
GCTTCCCAAACTAAATTTCT+CGG + chr1_3:5116644-5116663 None:intergenic 35.0%
ATCACGATAAGAAACCACCA+CGG - chr1_3:5098253-5098272 Msa0099080:CDS 40.0%
! GCAAACAATAACAAGTGCTG+TGG + chr1_3:5098314-5098333 None:intergenic 40.0%
!! GCACTTGTTATTGTTTGCCA+TGG - chr1_3:5098316-5098335 Msa0099080:CDS 40.0%
CCTTGGAAGATTGAAAACCA+TGG + chr1_3:5098336-5098355 None:intergenic 40.0%
! CCATGGTTTTCAATCTTCCA+AGG - chr1_3:5098333-5098352 Msa0099080:CDS 40.0%
TCTATAGGAAAGGATTCCCA+TGG - chr1_3:5098631-5098650 Msa0099080:CDS 40.0%
ATAGAAGAAAGCGGGACAAA+AGG - chr1_3:5099013-5099032 Msa0099080:CDS 40.0%
CAAAAGGCTAAGAAAGTCGA+AGG - chr1_3:5099029-5099048 Msa0099080:CDS 40.0%
! AGAAAGTCGAAGGATTTTGG+AGG - chr1_3:5099039-5099058 Msa0099080:CDS 40.0%
! GAAAGTCGAAGGATTTTGGA+GGG - chr1_3:5099040-5099059 Msa0099080:CDS 40.0%
!! AAAGTCGAAGGATTTTGGAG+GGG - chr1_3:5099041-5099060 Msa0099080:CDS 40.0%
!! TCTTAGTCTTGGGGTATGTT+TGG + chr1_3:5099220-5099239 None:intergenic 40.0%
TCTGCGTGAAAACGTTACTA+TGG - chr1_3:5099275-5099294 Msa0099080:CDS 40.0%
!! TCTTAGTCTTGGGGTATGTT+TGG + chr1_3:5099220-5099239 None:intergenic 40.0%
TCTGCGTGAAAACGTTACTA+TGG - chr1_3:5099275-5099294 Msa0099080:CDS 40.0%
GTTAGGGAAACCTCTTAACT+TGG - chr1_3:5099544-5099563 Msa0099080:intron 40.0%
! TTTGGCATTCAGGTTCTGTT+GGG + chr1_3:5099584-5099603 None:intergenic 40.0%
! ATTTGGCATTCAGGTTCTGT+TGG + chr1_3:5099585-5099604 None:intergenic 40.0%
AACTCAGCAGACAACTTATG+AGG - chr1_3:5100113-5100132 Msa0099080:intron 40.0%
ACTCAGCAGACAACTTATGA+GGG - chr1_3:5100114-5100133 Msa0099080:intron 40.0%
!! CATGGGCTAGTAATAAAGGT+AGG - chr1_3:5100259-5100278 Msa0099080:intron 40.0%
GTGTTGTCAAATATTGGCCA+TGG - chr1_3:5100300-5100319 Msa0099080:intron 40.0%
ATGGAATGTTTGCCAGAGTT+TGG - chr1_3:5100557-5100576 Msa0099080:intron 40.0%
TCTGTACGTTTGCAGGTAAA+TGG - chr1_3:5100768-5100787 Msa0099080:intron 40.0%
GATTGTGAGAGACATGCATA+GGG + chr1_3:5100827-5100846 None:intergenic 40.0%
AGATTGTGAGAGACATGCAT+AGG + chr1_3:5100828-5100847 None:intergenic 40.0%
TCACTATGATGGTTTCTGCA+GGG - chr1_3:5100870-5100889 Msa0099080:intron 40.0%
ATCCATGGATGAAACTGTAC+CGG - chr1_3:5101657-5101676 Msa0099080:intron 40.0%
!! AACTCTAAAGCATCTTCTGC+CGG + chr1_3:5101679-5101698 None:intergenic 40.0%
CATGAACTGCACATCATAGA+AGG - chr1_3:5101718-5101737 Msa0099080:intron 40.0%
TGAACTGCACATCATAGAAG+GGG - chr1_3:5101720-5101739 Msa0099080:intron 40.0%
GACTAGAATCGTGAATGGAT+AGG + chr1_3:5101868-5101887 None:intergenic 40.0%
ACAAGGACTAGAATCGTGAA+TGG + chr1_3:5101873-5101892 None:intergenic 40.0%
CTCTGACAGCCAATAACTAT+TGG + chr1_3:5101996-5102015 None:intergenic 40.0%
ACGACTTATATTGTCTGACG+GGG - chr1_3:5102203-5102222 Msa0099080:intron 40.0%
GAGACTAAATAGTTGGATGG+AGG + chr1_3:5102452-5102471 None:intergenic 40.0%
GAAGAGATGAGATTAGGGAT+TGG + chr1_3:5102614-5102633 None:intergenic 40.0%
TTAGTTTCAATCATGGCTGG+TGG - chr1_3:5102672-5102691 Msa0099080:intron 40.0%
TAGTTTCAATCATGGCTGGT+GGG - chr1_3:5102673-5102692 Msa0099080:intron 40.0%
ATGTGTAGAGAAGCTTGACA+AGG - chr1_3:5102747-5102766 Msa0099080:intron 40.0%
AAACTCACACACCTTAAGTG+TGG - chr1_3:5103101-5103120 Msa0099080:intron 40.0%
GACGTTGAAATGCATGGTAT+GGG + chr1_3:5103156-5103175 None:intergenic 40.0%
!! AAACTTAGTTGGTAGCTGCA+TGG + chr1_3:5103178-5103197 None:intergenic 40.0%
TCAGGATCAAACAAACGTTG+AGG - chr1_3:5103575-5103594 Msa0099080:intron 40.0%
GTGAAGAAGATAAGGGTGAT+TGG + chr1_3:5103896-5103915 None:intergenic 40.0%
GAAGTCATAATCTAATCCGC+AGG + chr1_3:5104030-5104049 None:intergenic 40.0%
GATTATGACTTCAAGACGAG+AGG - chr1_3:5104038-5104057 Msa0099080:intron 40.0%
! TGCTTTCAGCCTTTTTGTAG+AGG + chr1_3:5104138-5104157 None:intergenic 40.0%
AGAAGAGAAGATTAGTGCGT+GGG + chr1_3:5104170-5104189 None:intergenic 40.0%
AAGAAGAGAAGATTAGTGCG+TGG + chr1_3:5104171-5104190 None:intergenic 40.0%
AATGGCACGAAATGAACTGT+TGG - chr1_3:5104200-5104219 Msa0099080:intron 40.0%
ATGGCACGAAATGAACTGTT+GGG - chr1_3:5104201-5104220 Msa0099080:intron 40.0%
CTCCAAAAACACAACAAACG+TGG - chr1_3:5104252-5104271 Msa0099080:intron 40.0%
AGATATACGACGTCTCTGAA+TGG - chr1_3:5104301-5104320 Msa0099080:intron 40.0%
GATATACGACGTCTCTGAAT+GGG - chr1_3:5104302-5104321 Msa0099080:intron 40.0%
AGAAGAGGTTCCGATAATCA+CGG + chr1_3:5104485-5104504 None:intergenic 40.0%
ATGTTCTGTGTCAGTGTTTG+TGG - chr1_3:5104579-5104598 Msa0099080:intron 40.0%
GGTTTCTTGTGGATTCAAAG+TGG - chr1_3:5104654-5104673 Msa0099080:intron 40.0%
TCTTGTGGATTCAAAGTGGT+TGG - chr1_3:5104658-5104677 Msa0099080:intron 40.0%
AGATTATGGCGAACCGTAAT+TGG - chr1_3:5104706-5104725 Msa0099080:intron 40.0%
!! TGGTTTGTTCAGATCCTTTC+TGG - chr1_3:5104732-5104751 Msa0099080:intron 40.0%
! TTTCTGGTATAAGCATGGAG+TGG - chr1_3:5104763-5104782 Msa0099080:intron 40.0%
CAAGACTATTACAAGCAAGG+TGG + chr1_3:5104812-5104831 None:intergenic 40.0%
! GTTTGTTACCAGCATAGCAT+TGG - chr1_3:5104951-5104970 Msa0099080:intron 40.0%
! TTGGATTTGGTACCCTTTGT+TGG - chr1_3:5105093-5105112 Msa0099080:intron 40.0%
TTTACCTAATTGGGGTGAGA+GGG - chr1_3:5105123-5105142 Msa0099080:intron 40.0%
GTCAACCAACATCTCATGAT+TGG - chr1_3:5105233-5105252 Msa0099080:intron 40.0%
TGGTTTGAGAAGCAAACTAG+TGG - chr1_3:5105253-5105272 Msa0099080:intron 40.0%
GGTTTGAGAAGCAAACTAGT+GGG - chr1_3:5105254-5105273 Msa0099080:intron 40.0%
TGAAACCAATCCATCCAAGA+AGG + chr1_3:5105298-5105317 None:intergenic 40.0%
!! TCTTGGATGGATTGGTTTCA+TGG - chr1_3:5105298-5105317 Msa0099080:intron 40.0%
TTGCACAGATCCTTAACCAA+AGG + chr1_3:5105394-5105413 None:intergenic 40.0%
TAATTGCGTGTCTTTCTGGA+AGG - chr1_3:5105432-5105451 Msa0099080:intron 40.0%
CGTCTGAATGGTAAGTAGAT+TGG + chr1_3:5105458-5105477 None:intergenic 40.0%
TACTTACCATTCAGACGTTG+AGG - chr1_3:5105461-5105480 Msa0099080:intron 40.0%
TGGGAAGCTGTTAATACTCA+TGG - chr1_3:5105538-5105557 Msa0099080:intron 40.0%
!! TACTGATACTGGTTCATCTG+AGG - chr1_3:5105698-5105717 Msa0099080:intron 40.0%
CAAATATCCATTGCCGCATA+AGG + chr1_3:5105806-5105825 None:intergenic 40.0%
AACAATCAGCAGCATAAGGA+AGG + chr1_3:5105953-5105972 None:intergenic 40.0%
AAGCAACAATCAGCAGCATA+AGG + chr1_3:5105957-5105976 None:intergenic 40.0%
TGTGATAAGATTTGGCATCC+AGG + chr1_3:5106223-5106242 None:intergenic 40.0%
GAAGCAGACTTGTATCGTTA+AGG + chr1_3:5106272-5106291 None:intergenic 40.0%
! TTGTCTTCTAGGGAAAGTGA+AGG - chr1_3:5106551-5106570 Msa0099080:intron 40.0%
AGTGTTTGACTATAGCTCAC+AGG + chr1_3:5106620-5106639 None:intergenic 40.0%
!! GAGTGCATGGGTTAGTATAT+AGG - chr1_3:5106888-5106907 Msa0099080:CDS 40.0%
! TCATTGGAGAAAGCATGTGA+TGG - chr1_3:5107034-5107053 Msa0099080:CDS 40.0%
GTTTGTCAGATATATCTGGC+CGG - chr1_3:5107135-5107154 Msa0099080:intron 40.0%
! CTCCTTTTGCTAGGTTAAAC+CGG + chr1_3:5107157-5107176 None:intergenic 40.0%
GTTTAACCTAGCAAAAGGAG+TGG - chr1_3:5107157-5107176 Msa0099080:intron 40.0%
CAGCAAATGAACAAAGAAGC+AGG + chr1_3:5101155-5101174 None:intergenic 40.0%
AGATCATCAGAACCATGACA+TGG + chr1_3:5107358-5107377 None:intergenic 40.0%
AAACCTTGCCAGCAATTACA+GGG + chr1_3:5107527-5107546 None:intergenic 40.0%
TGTTGACAGTTCAGAATCCA+TGG - chr1_3:5107654-5107673 Msa0099080:intron 40.0%
!! AACTCTAAAGCATCTTCTGC+GGG + chr1_3:5101679-5101698 None:intergenic 40.0%
CATAAACTGCGCATCATAGA+AGG - chr1_3:5107727-5107746 Msa0099080:intron 40.0%
TAAACTGCGCATCATAGAAG+GGG - chr1_3:5107729-5107748 Msa0099080:intron 40.0%
ACATCCAAGTAGACACGATT+TGG - chr1_3:5107838-5107857 Msa0099080:intron 40.0%
TCTTCCAAATCGTGTCTACT+TGG + chr1_3:5107845-5107864 None:intergenic 40.0%
! AAGTAGACACGATTTGGAAG+AGG - chr1_3:5107844-5107863 Msa0099080:intron 40.0%
! AATTATTGGCTGCGAGGAAT+AGG + chr1_3:5107967-5107986 None:intergenic 40.0%
! ATGTACAATTATTGGCTGCG+AGG + chr1_3:5107973-5107992 None:intergenic 40.0%
ATAACCTGGCAATAATGACG+CGG + chr1_3:5102093-5102112 None:intergenic 40.0%
TGTTCTATCTACCAGATGAG+TGG + chr1_3:5108164-5108183 None:intergenic 40.0%
ATGTTACTAAAAGCAGGAGG+GGG - chr1_3:5108367-5108386 Msa0099080:intron 40.0%
AGTCAGCTTTCAATCTAAGG+GGG + chr1_3:5108494-5108513 None:intergenic 40.0%
CAGTCAGCTTTCAATCTAAG+GGG + chr1_3:5108495-5108514 None:intergenic 40.0%
CTTAACAGCAGTACTACAGT+AGG + chr1_3:5108554-5108573 None:intergenic 40.0%
CTACTGTAGTACTGCTGTTA+AGG - chr1_3:5108552-5108571 Msa0099080:intron 40.0%
GTGCAAAATTCTGTGGCTAT+AGG + chr1_3:5108583-5108602 None:intergenic 40.0%
TCACGAGTCTCTTTATCTTG+AGG - chr1_3:5108648-5108667 Msa0099080:intron 40.0%
CGTGCTATCCTTATGTGTTA+TGG + chr1_3:5108783-5108802 None:intergenic 40.0%
TACGGAAAGAGAAAGGAAGA+TGG - chr1_3:5108938-5108957 Msa0099080:intron 40.0%
TGCGTCTAGCAGAATGAATT+AGG + chr1_3:5109526-5109545 None:intergenic 40.0%
! CATTCTGCTAGACGCAATTT+TGG - chr1_3:5109530-5109549 Msa0099080:intron 40.0%
!!! CTTCAGCCTCACTTTTTGTT+TGG + chr1_3:5109759-5109778 None:intergenic 40.0%
! CAACGGATTCAACTTTCTGT+TGG - chr1_3:5109851-5109870 Msa0099080:intron 40.0%
CATTTCGGTTCAATTCGGTT+CGG + chr1_3:5110038-5110057 None:intergenic 40.0%
ACCGAACTGAACCAAATGTA+TGG - chr1_3:5110107-5110126 Msa0099080:intron 40.0%
GGTTAACCGAACCATACATT+TGG + chr1_3:5110121-5110140 None:intergenic 40.0%
AAATGGCATGAGCATAACAG+AGG - chr1_3:5110463-5110482 Msa0099080:intron 40.0%
!! TAGTTTGGTTTGGTTCGGTT+CGG - chr1_3:5110639-5110658 Msa0099080:intron 40.0%
ATCCAAAAACTGAACCGAAC+CGG + chr1_3:5110669-5110688 None:intergenic 40.0%
! GGAAACGTTTCTTTAGGAGT+GGG + chr1_3:5110699-5110718 None:intergenic 40.0%
! TGGAAACGTTTCTTTAGGAG+TGG + chr1_3:5110700-5110719 None:intergenic 40.0%
! CACAATCTTGGTGGCATTTA+GGG - chr1_3:5110744-5110763 Msa0099080:intron 40.0%
AAGAAGATAAGGGTGGTTGA+AGG + chr1_3:5111288-5111307 None:intergenic 40.0%
GTCAAATGTGCATCTGTCAA+AGG + chr1_3:5111407-5111426 None:intergenic 40.0%
GAAGCTCCGATACTTCAAAA+TGG - chr1_3:5111562-5111581 Msa0099080:intron 40.0%
ACACAAGTATCCGTGTGTAT+CGG + chr1_3:5111719-5111738 None:intergenic 40.0%
ATGCAATTGTTTGTGTGGTG+TGG + chr1_3:5111859-5111878 None:intergenic 40.0%
AATCAAGATACGATACGGCT+GGG + chr1_3:5112155-5112174 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG + chr1_3:5112156-5112175 None:intergenic 40.0%
!! ATTTTTCCGTATCGGCGTAT+CGG - chr1_3:5112181-5112200 Msa0099080:intron 40.0%
!! TTTTGGAGATGTGGCTCAAT+TGG + chr1_3:5112913-5112932 None:intergenic 40.0%
!! TACTTTGAAAGCGACGCTTT+TGG + chr1_3:5112930-5112949 None:intergenic 40.0%
AAGAATTCCACATGTGCTGT+GGG + chr1_3:5112954-5112973 None:intergenic 40.0%
ATTAAACAACCCAATCCTCG+AGG - chr1_3:5113167-5113186 Msa0099080:intron 40.0%
TGTCAATTAAATTGGGACGG+AGG + chr1_3:5113345-5113364 None:intergenic 40.0%
AAATATTACTCCCTCCGTCT+CGG + chr1_3:5113557-5113576 None:intergenic 40.0%
TGCTTATATTAGTGACCGGA+GGG + chr1_3:5114567-5114586 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + chr1_3:5114566-5114585 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG - chr1_3:5114566-5114585 Msa0099080:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG - chr1_3:5114567-5114586 Msa0099080:intron 40.0%
!!! GAAGATTTTGGGTTTGATCC+TGG - chr1_3:5114841-5114860 Msa0099080:intron 40.0%
! AGGTATTTGGTTCGAGATCT+GGG + chr1_3:5114943-5114962 None:intergenic 40.0%
TAGGGTCAATCAGGTAAACT+AGG + chr1_3:5115167-5115186 None:intergenic 40.0%
GAATACATTAGGTGGGGATA+GGG + chr1_3:5115185-5115204 None:intergenic 40.0%
TGAATACATTAGGTGGGGAT+AGG + chr1_3:5115186-5115205 None:intergenic 40.0%
TTGTAGAGAGGGAAGTAAGT+AGG + chr1_3:5115223-5115242 None:intergenic 40.0%
CTTCAAAAACACAACACTCG+CGG - chr1_3:5115375-5115394 Msa0099080:intron 40.0%
!!! GTTTTGGAGATGTCTGTAAG+CGG + chr1_3:5115538-5115557 None:intergenic 40.0%
! GTTTGGTTAGTTCGGAGAAA+AGG + chr1_3:5115623-5115642 None:intergenic 40.0%
TTTCTCCGAACTAACCAAAC+TGG - chr1_3:5115623-5115642 Msa0099080:intron 40.0%
TTCTCCGAACTAACCAAACT+GGG - chr1_3:5115624-5115643 Msa0099080:intron 40.0%
! CAAACCCAGTTTGGTTAGTT+CGG + chr1_3:5115631-5115650 None:intergenic 40.0%
TTCTTCGAACAAACCCAGTT+TGG + chr1_3:5115640-5115659 None:intergenic 40.0%
! CTGGGTTTGTTCGAAGAAAA+AGG - chr1_3:5115642-5115661 Msa0099080:intron 40.0%
! GTGCTTTCTGGAGGATTAAT+GGG - chr1_3:5115756-5115775 Msa0099080:intron 40.0%
! GAGGATTAATGGGTCTTCTT+TGG - chr1_3:5115766-5115785 Msa0099080:intron 40.0%
GGTCTTCTTTGGATTCAAAG+TGG - chr1_3:5115777-5115796 Msa0099080:intron 40.0%
TGGATTCAAAGTGGTTGGAT+TGG - chr1_3:5104663-5104682 Msa0099080:intron 40.0%
AGGTTATGGTTAACCGGAAA+TGG - chr1_3:5115829-5115848 Msa0099080:intron 40.0%
! CTTTCTGGTAATGTTCTTGC+TGG - chr1_3:5115870-5115889 Msa0099080:intron 40.0%
!! CTGGTATAAGCATTGAATGG+TGG - chr1_3:5115889-5115908 Msa0099080:intron 40.0%
CAGGATAATAACTCCAATGC+TGG + chr1_3:5104967-5104986 None:intergenic 40.0%
! ATCCTGTGATGTGTTTTGCT+AGG - chr1_3:5116099-5116118 Msa0099080:intron 40.0%
!!! TTTTAGGGTTGGCTCTGTTT+TGG - chr1_3:5116192-5116211 Msa0099080:intron 40.0%
! TTGGATTTGGTACCCTTTGT+TGG - chr1_3:5105093-5105112 Msa0099080:intron 40.0%
TTTACCTAATTGGGGTGAGA+GGG - chr1_3:5105123-5105142 Msa0099080:intron 40.0%
!!! CTTGCTAGTTTTTGTGTGAC+TGG - chr1_3:5116275-5116294 Msa0099080:intron 40.0%
! TGTGAAGTGTTCTTCTTGGA+TGG - chr1_3:5116403-5116422 Msa0099080:CDS 40.0%
AGTGTTCTTCTTGGATGGAT+TGG - chr1_3:5116408-5116427 Msa0099080:CDS 40.0%
!! TCTTGGATGGATTGGTTTCA+TGG - chr1_3:5105298-5105317 Msa0099080:intron 40.0%
ATCTTCCTCAAATTACACCG+TGG + chr1_3:5116485-5116504 None:intergenic 40.0%
TTTGAGGAAGATTTCGCCTT+TGG - chr1_3:5116493-5116512 Msa0099080:exon 40.0%
GAAGATTTCGCCTTTGGTTA+AGG - chr1_3:5116499-5116518 Msa0099080:five_prime_UTR 40.0%
TTGCACAGATCCTTAACCAA+AGG + chr1_3:5105394-5105413 None:intergenic 40.0%
CAATTGTGTGTCTTTCTGGA+AGG - chr1_3:5116550-5116569 Msa0099080:five_prime_UTR 40.0%
CGGTTCCGAGAAATTTAGTT+TGG - chr1_3:5116636-5116655 Msa0099080:five_prime_UTR 40.0%
TGGGAAGCTGTTAATACTCA+TGG - chr1_3:5105538-5105557 Msa0099080:intron 40.0%
TCAGAATGAAAGCCTCTCAG+CGG + chr1_3:5098133-5098152 None:intergenic 45.0%
!! TGGCCGATTTTGTTACACAG+AGG - chr1_3:5098227-5098246 Msa0099080:CDS 45.0%
! TACCAACGAGATTTTCACCG+TGG + chr1_3:5098273-5098292 None:intergenic 45.0%
GAAGAGAATGATGCGAACCT+TGG + chr1_3:5098353-5098372 None:intergenic 45.0%
!! ACAGGGGATAAGAGAGTGTT+TGG - chr1_3:5098962-5098981 Msa0099080:CDS 45.0%
AGTCTTGGGGTATGTTTGGA+TGG + chr1_3:5099216-5099235 None:intergenic 45.0%
! CGTTTTCACGCAGACCAAAT+GGG + chr1_3:5099269-5099288 None:intergenic 45.0%
! ACGTTTTCACGCAGACCAAA+TGG + chr1_3:5099270-5099289 None:intergenic 45.0%
! CGTTTTCACGCAGACCAAAT+GGG + chr1_3:5099269-5099288 None:intergenic 45.0%
! ACGTTTTCACGCAGACCAAA+TGG + chr1_3:5099270-5099289 None:intergenic 45.0%
AAGCACATCGCCAAGTTAAG+AGG + chr1_3:5099557-5099576 None:intergenic 45.0%
! TTGTCCTCTAGGGAAAGTGA+AGG - chr1_3:5099926-5099945 Msa0099080:intron 45.0%
TGAACCTTCACTTTCCCTAG+AGG + chr1_3:5099933-5099952 None:intergenic 45.0%
TATTGTCCAACACTTCCGTG+AGG - chr1_3:5099997-5100016 Msa0099080:intron 45.0%
! ATTTCTCCTCACGGAAGTGT+TGG + chr1_3:5100006-5100025 None:intergenic 45.0%
!! CGTGCATGGGCTAGTAATAA+AGG - chr1_3:5100255-5100274 Msa0099080:intron 45.0%
ATATTGGCCATGGCAGATTG+TGG - chr1_3:5100310-5100329 Msa0099080:intron 45.0%
GTAGTCTTCTGTACGTTTGC+AGG - chr1_3:5100761-5100780 Msa0099080:intron 45.0%
CTCACTATGATGGTTTCTGC+AGG - chr1_3:5100869-5100888 Msa0099080:intron 45.0%
CACTATGATGGTTTCTGCAG+GGG - chr1_3:5100871-5100890 Msa0099080:intron 45.0%
ACTATGATGGTTTCTGCAGG+GGG - chr1_3:5100872-5100891 Msa0099080:intron 45.0%
AGGTGAATTGACTGCTTGCA+TGG - chr1_3:5101210-5101229 Msa0099080:intron 45.0%
!! AACAGGGTGTTGACAGTTCA+TGG - chr1_3:5101634-5101653 Msa0099080:intron 45.0%
GTTGACAGTTCATGGATCCA+TGG - chr1_3:5101642-5101661 Msa0099080:intron 45.0%
ACATCTAAGCAGACGTGCTT+TGG - chr1_3:5101829-5101848 Msa0099080:intron 45.0%
CCTTGTAGAATACGCTGATC+CGG - chr1_3:5101887-5101906 Msa0099080:intron 45.0%
! ATAACTATTGGCTGGCTGGT+GGG + chr1_3:5101984-5102003 None:intergenic 45.0%
! AATAACTATTGGCTGGCTGG+TGG + chr1_3:5101985-5102004 None:intergenic 45.0%
ACCAGCCAGCCAATAGTTAT+TGG - chr1_3:5101984-5102003 Msa0099080:intron 45.0%
GACAGCCAATAACTATTGGC+TGG + chr1_3:5101992-5102011 None:intergenic 45.0%
ACTACTGCGTCATTATTGCC+AGG - chr1_3:5102086-5102105 Msa0099080:intron 45.0%
CGACTTATATTGTCTGACGG+GGG - chr1_3:5102204-5102223 Msa0099080:intron 45.0%
TTATATTGTCTGACGGGGGT+TGG - chr1_3:5102208-5102227 Msa0099080:intron 45.0%
!! GGGTTGGCTTACACACTATA+TGG - chr1_3:5102224-5102243 Msa0099080:intron 45.0%
!! GGAGAGAAAGTGTTAGCCTA+GGG + chr1_3:5102380-5102399 None:intergenic 45.0%
!! TGGAGAGAAAGTGTTAGCCT+AGG + chr1_3:5102381-5102400 None:intergenic 45.0%
TAGGGATTGGAGGACTATTG+AGG + chr1_3:5102601-5102620 None:intergenic 45.0%
GAGATGAGATTAGGGATTGG+AGG + chr1_3:5102611-5102630 None:intergenic 45.0%
ACTAGTTCGAGCTCAACAAG+AGG - chr1_3:5102708-5102727 Msa0099080:intron 45.0%
CTAGTTCGAGCTCAACAAGA+GGG - chr1_3:5102709-5102728 Msa0099080:intron 45.0%
TCAACAAGAGGGAGAAGTTG+TGG - chr1_3:5102720-5102739 Msa0099080:intron 45.0%
GTAGAGAAGCTTGACAAGGA+TGG - chr1_3:5102751-5102770 Msa0099080:intron 45.0%
ACACCTTAAGTGTGGAGAAG+TGG - chr1_3:5103109-5103128 Msa0099080:intron 45.0%
CACCTTAAGTGTGGAGAAGT+GGG - chr1_3:5103110-5103129 Msa0099080:intron 45.0%
TTCCCACTTCTCCACACTTA+AGG + chr1_3:5103115-5103134 None:intergenic 45.0%
GGACGTTGAAATGCATGGTA+TGG + chr1_3:5103157-5103176 None:intergenic 45.0%
TGCATGGACGTTGAAATGCA+TGG + chr1_3:5103162-5103181 None:intergenic 45.0%
GATCAAACAAACGTTGAGGC+TGG - chr1_3:5103579-5103598 Msa0099080:intron 45.0%
TTAGTCACGTTGTGCACCAT+TGG + chr1_3:5103862-5103881 None:intergenic 45.0%
CACAAAAATGTGAAGGCCTG+CGG - chr1_3:5104011-5104030 Msa0099080:intron 45.0%
TGTAGTGTGCATGGACAAGT+AGG + chr1_3:5104102-5104121 None:intergenic 45.0%
!!! CGCCACGTTTGTTGTGTTTT+TGG + chr1_3:5104257-5104276 None:intergenic 45.0%
GTCGTATATCTTGCCGTCAA+TGG + chr1_3:5104292-5104311 None:intergenic 45.0%
GTGGAAAGCAAGGAATGCTT+CGG + chr1_3:5104385-5104404 None:intergenic 45.0%
GAAGAGGTTCCGATAATCAC+GGG + chr1_3:5104484-5104503 None:intergenic 45.0%
!! TGTGTGTTGTGGTGGGTTAA+TGG - chr1_3:5104632-5104651 Msa0099080:intron 45.0%
!! GTGTGTTGTGGTGGGTTAAT+GGG - chr1_3:5104633-5104652 Msa0099080:intron 45.0%
!! GTGGGTTAATGGGTTTCTTG+TGG - chr1_3:5104643-5104662 Msa0099080:intron 45.0%
! TAAGCATGGAGTGGTGGAAA+TGG - chr1_3:5104772-5104791 Msa0099080:intron 45.0%
ATCCTGGTATGTGTTTGGCT+AGG - chr1_3:5104981-5105000 Msa0099080:intron 45.0%
AACCTAGCCAAACACATACC+AGG + chr1_3:5104986-5105005 None:intergenic 45.0%
GTTTACCTAATTGGGGTGAG+AGG - chr1_3:5105122-5105141 Msa0099080:intron 45.0%
AAAACCCTCTCACCCCAATT+AGG + chr1_3:5105130-5105149 None:intergenic 45.0%
TTGATGTCGAGTCTCCTTCT+TGG - chr1_3:5105281-5105300 Msa0099080:intron 45.0%
AGTCTCCTTCTTGGATGGAT+TGG - chr1_3:5105290-5105309 Msa0099080:intron 45.0%
!! TGGATGGATTGGTTTCATGG+TGG - chr1_3:5105301-5105320 Msa0099080:intron 45.0%
TTGAACACCATCTGTTTCCG+CGG - chr1_3:5105338-5105357 Msa0099080:intron 45.0%
ACTTTCCTTAGACTACACCG+AGG + chr1_3:5105367-5105386 None:intergenic 45.0%
TCTAAGGAAAGTCTCGCCTT+TGG - chr1_3:5105375-5105394 Msa0099080:intron 45.0%
GAAAGTCTCGCCTTTGGTTA+AGG - chr1_3:5105381-5105400 Msa0099080:intron 45.0%
AGCATTCCTCAACGTCTGAA+TGG + chr1_3:5105470-5105489 None:intergenic 45.0%
GCCTGTTCGATTTCCTTATG+CGG - chr1_3:5105790-5105809 Msa0099080:intron 45.0%
TCGATTTCCTTATGCGGCAA+TGG - chr1_3:5105796-5105815 Msa0099080:intron 45.0%
CCAAACGACGATGAATTCCA+AGG + chr1_3:5105853-5105872 None:intergenic 45.0%
CCTTGGAATTCATCGTCGTT+TGG - chr1_3:5105850-5105869 Msa0099080:intron 45.0%
ATAAGGAAGGAGCCAGGAAA+TGG + chr1_3:5105940-5105959 None:intergenic 45.0%
CTTCTACCGTATAAGTCGTC+TGG - chr1_3:5106114-5106133 Msa0099080:intron 45.0%
CGTTCACCAGACGACTTATA+CGG + chr1_3:5106123-5106142 None:intergenic 45.0%
!! GTTTTATTCCCGACAGAACC+TGG - chr1_3:5106202-5106221 Msa0099080:intron 45.0%
ATTTGGCATCCAGGTTCTGT+CGG + chr1_3:5106214-5106233 None:intergenic 45.0%
GCAGACTTGTATCGTTAAGG+AGG + chr1_3:5106269-5106288 None:intergenic 45.0%
! TGGTCACTTTGTTCCGAATG+AGG + chr1_3:5106396-5106415 None:intergenic 45.0%
AGTGAAGGTTCGTTTCAGTG+TGG - chr1_3:5106566-5106585 Msa0099080:intron 45.0%
ACAGGTCTTCAACTTCTCTG+TGG + chr1_3:5106602-5106621 None:intergenic 45.0%
! GTTCATTTGCTGCCATGTCA+TGG - chr1_3:5107343-5107362 Msa0099080:intron 45.0%
GGATTGATAAGCAGGCAAGA+TGG + chr1_3:5107506-5107525 None:intergenic 45.0%
AATCCCTGTAATTGCTGGCA+AGG - chr1_3:5107521-5107540 Msa0099080:intron 45.0%
CAAACCTTGCCAGCAATTAC+AGG + chr1_3:5107528-5107547 None:intergenic 45.0%
TGCGGGTATAGTTTCATCCA+TGG + chr1_3:5107674-5107693 None:intergenic 45.0%
GACTAGAACCGTGAATGGAA+AGG + chr1_3:5107877-5107896 None:intergenic 45.0%
TCTAGTCCTCGCAGAATATG+TGG - chr1_3:5107890-5107909 Msa0099080:intron 45.0%
TGTCAGACGTGCAATTGTTG+AGG + chr1_3:5108046-5108065 None:intergenic 45.0%
CCTCACTTGAGTTACACTTC+TGG + chr1_3:5108281-5108300 None:intergenic 45.0%
! CCAGAAGTGTAACTCAAGTG+AGG - chr1_3:5108278-5108297 Msa0099080:intron 45.0%
TGTTACTAAAAGCAGGAGGG+GGG - chr1_3:5108368-5108387 Msa0099080:intron 45.0%
!!! GATAGCACGCTCACTTTTTG+TGG - chr1_3:5108794-5108813 Msa0099080:intron 45.0%
!! CTGCTAGACGCAATTTTGGT+TGG - chr1_3:5109534-5109553 Msa0099080:intron 45.0%
GTCGTGATACTAGGTTGCAA+CGG - chr1_3:5109834-5109853 Msa0099080:intron 45.0%
AGCAAGTGGTGCACATATTG+AGG + chr1_3:5109940-5109959 None:intergenic 45.0%
ATGTGCAAGAAACTTAGGGG+TGG - chr1_3:5109988-5110007 Msa0099080:intron 45.0%
TGTGCAAGAAACTTAGGGGT+GGG - chr1_3:5109989-5110008 Msa0099080:intron 45.0%
! GGTTCGGTTAACCGTTTGTT+TGG - chr1_3:5110128-5110147 Msa0099080:intron 45.0%
!! TTTGGTTCGGTTCGGTTAAC+CGG - chr1_3:5110544-5110563 Msa0099080:intron 45.0%
!!! AACCGGTTCGGTTCAGTTTT+TGG - chr1_3:5110664-5110683 Msa0099080:intron 45.0%
! GCACAATCTTGGTGGCATTT+AGG - chr1_3:5110743-5110762 Msa0099080:intron 45.0%
! AATCTTGGTGGCATTTAGGG+TGG - chr1_3:5110747-5110766 Msa0099080:intron 45.0%
! ATCTTGGTGGCATTTAGGGT+GGG - chr1_3:5110748-5110767 Msa0099080:intron 45.0%
! GTCTCTGAAGAAGATAAGGG+TGG + chr1_3:5111295-5111314 None:intergenic 45.0%
ATCGGAGCTTCACATGTGAT+AGG + chr1_3:5111553-5111572 None:intergenic 45.0%
ATATCGGTGCAAGATACGCA+GGG + chr1_3:5111603-5111622 None:intergenic 45.0%
!! GATACGTATCGGGAAGTATC+GGG + chr1_3:5111629-5111648 None:intergenic 45.0%
! GGATACGTATCGGGAAGTAT+CGG + chr1_3:5111630-5111649 None:intergenic 45.0%
GATACTTCCCGATACGTATC+CGG - chr1_3:5111629-5111648 Msa0099080:intron 45.0%
ATACTCTCCGGATACGTATC+GGG + chr1_3:5111639-5111658 None:intergenic 45.0%
GATACTCTCCGGATACGTAT+CGG + chr1_3:5111640-5111659 None:intergenic 45.0%
CACAAGTATCCGTGTGTATC+GGG + chr1_3:5111718-5111737 None:intergenic 45.0%
TTGTTTGTGTGGTGTGGTGT+GGG + chr1_3:5111853-5111872 None:intergenic 45.0%
ATTGTTTGTGTGGTGTGGTG+TGG + chr1_3:5111854-5111873 None:intergenic 45.0%
CACCGTTGAAGTCTTGGTAT+CGG - chr1_3:5111944-5111963 Msa0099080:intron 45.0%
GTCCGATACCAAGACTTCAA+CGG + chr1_3:5111949-5111968 None:intergenic 45.0%
ATGTTAATGTGCTACGAGCC+TGG - chr1_3:5112039-5112058 Msa0099080:intron 45.0%
TCCGTATCGTATCTCGTATC+CGG - chr1_3:5112216-5112235 Msa0099080:intron 45.0%
! AATTAGGGTGTTCCTCCTTC+GGG + chr1_3:5112579-5112598 None:intergenic 45.0%
! GAATTAGGGTGTTCCTCCTT+CGG + chr1_3:5112580-5112599 None:intergenic 45.0%
! AAAGTATCCCACAGCACATG+TGG - chr1_3:5112944-5112963 Msa0099080:CDS 45.0%
CAAGAATTCCACATGTGCTG+TGG + chr1_3:5112955-5112974 None:intergenic 45.0%
ATGGGTCAGTTATTCCGAGA+CGG - chr1_3:5113540-5113559 Msa0099080:intron 45.0%
ACGATGTGAAATACACCCTC+CGG + chr1_3:5114585-5114604 None:intergenic 45.0%
! GGTATTTGGTTCGAGATCTG+GGG + chr1_3:5114942-5114961 None:intergenic 45.0%
! GAGGTATTTGGTTCGAGATC+TGG + chr1_3:5114944-5114963 None:intergenic 45.0%
CATCAATCGAGTTACTCACG+TGG - chr1_3:5115022-5115041 Msa0099080:intron 45.0%
TCGAGTTACTCACGTGGAAA+CGG - chr1_3:5115028-5115047 Msa0099080:intron 45.0%
GATGCATGGATCTCCATTGA+CGG - chr1_3:5115399-5115418 Msa0099080:intron 45.0%
GGAATGCATCAGTGACATCT+TGG + chr1_3:5115497-5115516 None:intergenic 45.0%
CATCTCCAAAACTTTGCCAC+TGG - chr1_3:5115546-5115565 Msa0099080:intron 45.0%
! AACTGCCAGTGGCAAAGTTT+TGG + chr1_3:5115554-5115573 None:intergenic 45.0%
! CGTGCTTTCTGGAGGATTAA+TGG - chr1_3:5115755-5115774 Msa0099080:intron 45.0%
!! GGTTGGATTGGTCATGATTC+TGG - chr1_3:5115798-5115817 Msa0099080:intron 45.0%
TCTTGGTCAGTTACCAGCAT+TGG - chr1_3:5116069-5116088 Msa0099080:intron 45.0%
AGCCTAGCAAAACACATCAC+AGG + chr1_3:5116104-5116123 None:intergenic 45.0%
!!! GGTTGGCTCTGTTTTGGATT+TGG - chr1_3:5116198-5116217 Msa0099080:intron 45.0%
GTTTACCTAATTGGGGTGAG+AGG - chr1_3:5105122-5105141 Msa0099080:intron 45.0%
AAAACCCTCTCACCCCAATT+AGG + chr1_3:5105130-5105149 None:intergenic 45.0%
TGTTTATGTTGGTCCACCGA+CGG - chr1_3:5116340-5116359 Msa0099080:intron 45.0%
TCAAACCAATCATGAGCCGT+CGG + chr1_3:5116359-5116378 None:intergenic 45.0%
TGGTTTGAGAAGCAAGCTCA+TGG - chr1_3:5116371-5116390 Msa0099080:CDS 45.0%
!! TGGATGGATTGGTTTCATGG+TGG - chr1_3:5105301-5105320 Msa0099080:intron 45.0%
ATTTGTTTCCGCGTCTTCCA+CGG - chr1_3:5116465-5116484 Msa0099080:CDS 45.0%
AAATTACACCGTGGAAGACG+CGG + chr1_3:5116476-5116495 None:intergenic 45.0%
GTCTTCCACGGTGTAATTTG+AGG - chr1_3:5116477-5116496 Msa0099080:exon 45.0%
GGCAAGGGATCTTACTAAAC+CGG - chr1_3:5116616-5116635 Msa0099080:five_prime_UTR 45.0%
!!! AATAATTATTTTAAAAATTG+TGG - chr1_3:5109631-5109650 Msa0099080:intron 5.0%
!!! TTGATTTTTTTTTTTTTTTA+AGG + chr1_3:5109733-5109752 None:intergenic 5.0%
!! TAAAAAAAAAAAATATTTGA+AGG + chr1_3:5113978-5113997 None:intergenic 5.0%
!!! AAAAAATTACTTTTATTTTT+GGG + chr1_3:5115100-5115119 None:intergenic 5.0%
!!! AAAAAAATTACTTTTATTTT+TGG + chr1_3:5115101-5115120 None:intergenic 5.0%
! CAACGAGATTTTCACCGTGG+TGG + chr1_3:5098270-5098289 None:intergenic 50.0%
CACCACGGTGAAAATCTCGT+TGG - chr1_3:5098268-5098287 Msa0099080:CDS 50.0%
GCAGCAGCAATGTTCACCAT+GGG + chr1_3:5098650-5098669 None:intergenic 50.0%
AGCAGCAGCAATGTTCACCA+TGG + chr1_3:5098651-5098670 None:intergenic 50.0%
!! GCTGCTGCTCTGGAAAAGAA+TGG - chr1_3:5098662-5098681 Msa0099080:CDS 50.0%
CATTTCCGGCGAAGTCAAAG+CGG + chr1_3:5098700-5098719 None:intergenic 50.0%
! GCTTTGACTTCGCCGGAAAT+GGG - chr1_3:5098699-5098718 Msa0099080:CDS 50.0%
CAGAGGAGCTTACCCATTTC+CGG + chr1_3:5098714-5098733 None:intergenic 50.0%
ATGGGTAAGCTCCTCTGCTT+AGG - chr1_3:5098717-5098736 Msa0099080:CDS 50.0%
TGGGGTATGTTTGGATGGAG+CGG + chr1_3:5099211-5099230 None:intergenic 50.0%
! AGTGTTGGACAATAGCTCGC+AGG + chr1_3:5099991-5100010 None:intergenic 50.0%
TCCACTACCACAATCTGCCA+TGG + chr1_3:5100320-5100339 None:intergenic 50.0%
! GGCCGATTTAACCTTGCAAG+AGG - chr1_3:5100956-5100975 Msa0099080:intron 50.0%
GACTCTCCATTCCTCTTGCA+AGG + chr1_3:5100970-5100989 None:intergenic 50.0%
AAGAGGAATGGAGAGTCGCT+TGG - chr1_3:5100973-5100992 Msa0099080:intron 50.0%
AGAGGAATGGAGAGTCGCTT+GGG - chr1_3:5100974-5100993 Msa0099080:intron 50.0%
GCATCACGAGGAAGCAGAAA+AGG + chr1_3:5101317-5101336 None:intergenic 50.0%
TGCCGGTACAGTTTCATCCA+TGG + chr1_3:5101662-5101681 None:intergenic 50.0%
CCGGATCAGCGTATTCTACA+AGG + chr1_3:5101890-5101909 None:intergenic 50.0%
! GCCAATAACTATTGGCTGGC+TGG + chr1_3:5101988-5102007 None:intergenic 50.0%
GTGGAGAAGTGGGAAGTTCT+AGG - chr1_3:5103120-5103139 Msa0099080:intron 50.0%
!! AGACGAGAGGAGCACTCATT+CGG - chr1_3:5104051-5104070 Msa0099080:intron 50.0%
ACAACAAACGTGGCGATGCA+TGG - chr1_3:5104262-5104281 Msa0099080:intron 50.0%
GATGCATGGATCGCCATTGA+CGG - chr1_3:5104276-5104295 Msa0099080:intron 50.0%
GGAATGCTTCGGTAACCTCT+TGG + chr1_3:5104374-5104393 None:intergenic 50.0%
GTAGTCACAGAGGTAGCTTC+CGG + chr1_3:5104445-5104464 None:intergenic 50.0%
CTGACGTGTCCCGTGATTAT+CGG - chr1_3:5104472-5104491 Msa0099080:intron 50.0%
TTCTCCGAACTGACCGAGAT+GGG - chr1_3:5104501-5104520 Msa0099080:intron 50.0%
TAACCCCATCTCGGTCAGTT+CGG + chr1_3:5104508-5104527 None:intergenic 50.0%
TGGCGAACCGTAATTGGAAC+TGG - chr1_3:5104712-5104731 Msa0099080:intron 50.0%
CTGGTATAAGCATGGAGTGG+TGG - chr1_3:5104766-5104785 Msa0099080:intron 50.0%
TGTCGAGTCTCCTTCTTGGA+TGG - chr1_3:5105285-5105304 Msa0099080:intron 50.0%
!! GGAATGCTGCTTTGCAAGCT+CGG - chr1_3:5105482-5105501 Msa0099080:intron 50.0%
!! GAATGCTGCTTTGCAAGCTC+GGG - chr1_3:5105483-5105502 Msa0099080:intron 50.0%
GCCGCATAAGGAAATCGAAC+AGG + chr1_3:5105794-5105813 None:intergenic 50.0%
TTTGGCATCCAGGTTCTGTC+GGG + chr1_3:5106213-5106232 None:intergenic 50.0%
! GGCCGGTTTAACCTAGCAAA+AGG - chr1_3:5107152-5107171 Msa0099080:intron 50.0%
CCAGATCCACATATTCTGCG+AGG + chr1_3:5107899-5107918 None:intergenic 50.0%
CCTCGCAGAATATGTGGATC+TGG - chr1_3:5107896-5107915 Msa0099080:intron 50.0%
ACTACCGCGTCATTATTGCC+AGG - chr1_3:5108069-5108088 Msa0099080:intron 50.0%
GAGTTTGAGCACCACTCATC+TGG - chr1_3:5108150-5108169 Msa0099080:intron 50.0%
GTTACTAAAAGCAGGAGGGG+GGG - chr1_3:5108369-5108388 Msa0099080:intron 50.0%
AGTTAGAAGGGGCAAGCAAG+TGG + chr1_3:5109954-5109973 None:intergenic 50.0%
! AAGAAACTTAGGGGTGGGCT+TGG - chr1_3:5109994-5110013 Msa0099080:intron 50.0%
AGGCTGGTATTACTGTACCC+AGG - chr1_3:5110483-5110502 Msa0099080:intron 50.0%
!! GTTCGGTTCGGTTAACCGTT+CGG - chr1_3:5110548-5110567 Msa0099080:intron 50.0%
!! TTCGGTTCGGTTAACCGGTT+CGG - chr1_3:5110652-5110671 Msa0099080:intron 50.0%
TGCAAGATACGCAGGGGATA+CGG + chr1_3:5111596-5111615 None:intergenic 50.0%
TATCGGTGCAAGATACGCAG+GGG + chr1_3:5111602-5111621 None:intergenic 50.0%
GATATCGGTGCAAGATACGC+AGG + chr1_3:5111604-5111623 None:intergenic 50.0%
!! GGGAAGTATCGGGCAGATAT+CGG + chr1_3:5111619-5111638 None:intergenic 50.0%
! CGGGACGTATCGGAAAGTAT+CGG + chr1_3:5111699-5111718 None:intergenic 50.0%
TTTGGCCACCGTTGAAGTCT+TGG - chr1_3:5111938-5111957 Msa0099080:intron 50.0%
CGATACCAAGACTTCAACGG+TGG + chr1_3:5111946-5111965 None:intergenic 50.0%
! GTCTTGGTATCGGACGACTT+TGG - chr1_3:5111954-5111973 Msa0099080:intron 50.0%
ACTACACCGATACGCCGATA+CGG + chr1_3:5112190-5112209 None:intergenic 50.0%
CCCGGATACGAGATACGATA+CGG + chr1_3:5112220-5112239 None:intergenic 50.0%
CCGTATCGTATCTCGTATCC+GGG - chr1_3:5112217-5112236 Msa0099080:intron 50.0%
! ACGGAATTGGTGATAGGCTG+TGG + chr1_3:5112245-5112264 None:intergenic 50.0%
! ATTAGGGTGTTCCTCCTTCG+GGG + chr1_3:5112578-5112597 None:intergenic 50.0%
TGGAGATGTGGCTCAATTGG+TGG + chr1_3:5112910-5112929 None:intergenic 50.0%
!! AAGCGACGCTTTTGGAGATG+TGG + chr1_3:5112922-5112941 None:intergenic 50.0%
CACAAGTTACACCCACTACG+TGG - chr1_3:5112996-5113015 Msa0099080:CDS 50.0%
CAAGCGAGTTTCCACGTAGT+GGG + chr1_3:5113010-5113029 None:intergenic 50.0%
TCAAGCGAGTTTCCACGTAG+TGG + chr1_3:5113011-5113030 None:intergenic 50.0%
GTCAGTTATTCCGAGACGGA+GGG - chr1_3:5113544-5113563 Msa0099080:intron 50.0%
GCGATGAGTTGCACGTTTGA+AGG + chr1_3:5114747-5114766 None:intergenic 50.0%
! GAAGGGTGTGAGAATGTGTG+TGG + chr1_3:5115261-5115280 None:intergenic 50.0%
GTCGTAGATCTTGCCGTCAA+TGG + chr1_3:5115415-5115434 None:intergenic 50.0%
TGCATCAGTGACATCTTGGC+CGG + chr1_3:5115493-5115512 None:intergenic 50.0%
GATGTCTGTAAGCGGATGGA+GGG + chr1_3:5115530-5115549 None:intergenic 50.0%
AGATGTCTGTAAGCGGATGG+AGG + chr1_3:5115531-5115550 None:intergenic 50.0%
TGGAGATGTCTGTAAGCGGA+TGG + chr1_3:5115534-5115553 None:intergenic 50.0%
TTAGTGCACGTGCTTTCTGG+AGG - chr1_3:5115747-5115766 Msa0099080:intron 50.0%
TTTGAGGAATGCGGCTTTGC+AGG - chr1_3:5116595-5116614 Msa0099080:five_prime_UTR 50.0%
GGTGAACATTGCTGCTGCTC+TGG - chr1_3:5098652-5098671 Msa0099080:CDS 55.0%
! CGCTTTGACTTCGCCGGAAA+TGG - chr1_3:5098698-5098717 Msa0099080:CDS 55.0%
GCCATGGCAGATTGTGGTAG+TGG - chr1_3:5100316-5100335 Msa0099080:intron 55.0%
GGTTTCTGCAGGGGGTAATG+TGG - chr1_3:5100880-5100899 Msa0099080:intron 55.0%
! ATGGCTGGTGGGTCAGTCAA+TGG - chr1_3:5102684-5102703 Msa0099080:intron 55.0%
GCACGATGCACAACTCTCTC+CGG + chr1_3:5104080-5104099 None:intergenic 55.0%
GAATGGGCCAAACACCATCC+TGG - chr1_3:5104318-5104337 Msa0099080:intron 55.0%
TTGGCCAGCAAAGCTGAGGA+GGG + chr1_3:5104355-5104374 None:intergenic 55.0%
TTGAGGCGGTTGTAGGCAGT+GGG + chr1_3:5104411-5104430 None:intergenic 55.0%
!! TTCCGGTGAAGAAGGCGTTG+AGG + chr1_3:5104428-5104447 None:intergenic 55.0%
GAGGTAGCTTCCGGTGAAGA+AGG + chr1_3:5104436-5104455 None:intergenic 55.0%
ATCACGGGACACGTCAGAGA+CGG + chr1_3:5104469-5104488 None:intergenic 55.0%
TCTCGGTCAGTTCGGAGAAG+AGG + chr1_3:5104500-5104519 None:intergenic 55.0%
CTTCTCCGAACTGACCGAGA+TGG - chr1_3:5104500-5104519 Msa0099080:intron 55.0%
TCTCCGAACTGACCGAGATG+GGG - chr1_3:5104502-5104521 Msa0099080:intron 55.0%
TCGTGTGTGCGTGTGTGTTG+TGG - chr1_3:5104621-5104640 Msa0099080:intron 55.0%
TGTGTGCGTGTGTGTTGTGG+TGG - chr1_3:5104624-5104643 Msa0099080:intron 55.0%
GTGTGCGTGTGTGTTGTGGT+GGG - chr1_3:5104625-5104644 Msa0099080:intron 55.0%
AAGCAAGGTGGTGCGCATTG+TGG + chr1_3:5104800-5104819 None:intergenic 55.0%
ATCTGTTTCCGCGGCTACCT+CGG - chr1_3:5105347-5105366 Msa0099080:intron 55.0%
! GGCTACCTCGGTGTAGTCTA+AGG - chr1_3:5105359-5105378 Msa0099080:intron 55.0%
AGCAGCATAAGGAAGGAGCC+AGG + chr1_3:5105946-5105965 None:intergenic 55.0%
AAAAGGAGTGGCGCGTCACT+TGG - chr1_3:5107169-5107188 Msa0099080:intron 55.0%
AAAGGAGTGGCGCGTCACTT+GGG - chr1_3:5107170-5107189 Msa0099080:intron 55.0%
GCGAGGACTAGAACCGTGAA+TGG + chr1_3:5107882-5107901 None:intergenic 55.0%
! ACTTAGGGGTGGGCTTGGTT+CGG - chr1_3:5109999-5110018 Msa0099080:intron 55.0%
GGCATGAGCATAACAGAGGC+TGG - chr1_3:5110467-5110486 Msa0099080:intron 55.0%
! GTGGCATTTAGGGTGGGTGT+GGG - chr1_3:5110754-5110773 Msa0099080:intron 55.0%
CCGTGTGTATCGGGACGTAT+CGG + chr1_3:5111709-5111728 None:intergenic 55.0%
CCGATACGTCCCGATACACA+CGG - chr1_3:5111706-5111725 Msa0099080:intron 55.0%
AAAGTGGACGGCGACCACTT+TGG + chr1_3:5111921-5111940 None:intergenic 55.0%
AAAGTGGTCGCCGTCCACTT+TGG - chr1_3:5111920-5111939 Msa0099080:intron 55.0%
TCAACGGTGGCCAAAGTGGA+CGG + chr1_3:5111933-5111952 None:intergenic 55.0%
GACTTCAACGGTGGCCAAAG+TGG + chr1_3:5111937-5111956 None:intergenic 55.0%
! ACACCAACAAAGCACCCCGA+AGG - chr1_3:5112561-5112580 Msa0099080:intron 55.0%
GGTCAGTTATTCCGAGACGG+AGG - chr1_3:5113543-5113562 Msa0099080:intron 55.0%
AGGTGGGGATAGGGTCAATC+AGG + chr1_3:5115176-5115195 None:intergenic 55.0%
AAATGGGCCAACCACCATCC+CGG - chr1_3:5115441-5115460 Msa0099080:intron 55.0%
GTCACGTAGGTAACTGCCAG+TGG + chr1_3:5115565-5115584 None:intergenic 55.0%
CAGAGACGACGTAGTCACGT+AGG + chr1_3:5115578-5115597 None:intergenic 55.0%
GCGTTAGTGCACGTGCTTTC+TGG - chr1_3:5115744-5115763 Msa0099080:intron 55.0%
AACCAATCATGAGCCGTCGG+TGG + chr1_3:5116356-5116375 None:intergenic 55.0%
GAATGCGGCTTTGCAGGCAA+GGG - chr1_3:5116601-5116620 Msa0099080:five_prime_UTR 55.0%
! GCCTTCCGCTTTGACTTCGC+CGG - chr1_3:5098692-5098711 Msa0099080:CDS 60.0%
TCCGGCGAAGTCAAAGCGGA+AGG + chr1_3:5098696-5098715 None:intergenic 60.0%
!! AGGAGCACTCATTCGGCCTC+CGG - chr1_3:5104058-5104077 Msa0099080:intron 60.0%
CGATGCACAACTCTCTCCGG+AGG + chr1_3:5104077-5104096 None:intergenic 60.0%
TGGGCCAAACACCATCCTGG+CGG - chr1_3:5104321-5104340 Msa0099080:intron 60.0%
TTCGCCGCCAGGATGGTGTT+TGG + chr1_3:5104328-5104347 None:intergenic 60.0%
TTCCCCCTCCTCAGCTTTGC+TGG - chr1_3:5104348-5104367 Msa0099080:intron 60.0%
TGGCCAGCAAAGCTGAGGAG+GGG + chr1_3:5104354-5104373 None:intergenic 60.0%
CTTGGCCAGCAAAGCTGAGG+AGG + chr1_3:5104356-5104375 None:intergenic 60.0%
CCTCTTGGCCAGCAAAGCTG+AGG + chr1_3:5104359-5104378 None:intergenic 60.0%
CCTCAGCTTTGCTGGCCAAG+AGG - chr1_3:5104356-5104375 Msa0099080:intron 60.0%
CAGTGGGAGGGTGGAAAGCA+AGG + chr1_3:5104395-5104414 None:intergenic 60.0%
GTTGAGGCGGTTGTAGGCAG+TGG + chr1_3:5104412-5104431 None:intergenic 60.0%
!! GAAGGCGTTGAGGCGGTTGT+AGG + chr1_3:5104418-5104437 None:intergenic 60.0%
!! CGGTGAAGAAGGCGTTGAGG+CGG + chr1_3:5104425-5104444 None:intergenic 60.0%
CGCCTCAACGCCTTCTTCAC+CGG - chr1_3:5104423-5104442 Msa0099080:intron 60.0%
CAGAGACGGCGTAGTCACAG+AGG + chr1_3:5104455-5104474 None:intergenic 60.0%
GAGGTAGCCGCGGAAACAGA+TGG + chr1_3:5105348-5105367 None:intergenic 60.0%
AGACTACACCGAGGTAGCCG+CGG + chr1_3:5105358-5105377 None:intergenic 60.0%
! GACGCGCCACTCCTTTTGCT+AGG + chr1_3:5107166-5107185 None:intergenic 60.0%
CTGCGCATCATAGAAGGGGC+TGG - chr1_3:5107733-5107752 Msa0099080:intron 60.0%
! GGTGGCATTTAGGGTGGGTG+TGG - chr1_3:5110753-5110772 Msa0099080:intron 60.0%
TGGTGTGGTGTGGGTCGTAC+TGG + chr1_3:5111844-5111863 None:intergenic 60.0%
TGGTGATAGGCTGTGGAGCC+CGG + chr1_3:5112238-5112257 None:intergenic 60.0%
! CCTCCTTCGGGGTGCTTTGT+TGG + chr1_3:5112567-5112586 None:intergenic 60.0%
! CCAACAAAGCACCCCGAAGG+AGG - chr1_3:5112564-5112583 Msa0099080:intron 60.0%
ACAACACTCGCGGCGATGCA+TGG - chr1_3:5115385-5115404 Msa0099080:intron 60.0%
CTTCCTCTCCTCAACCTCGC+CGG - chr1_3:5115471-5115490 Msa0099080:intron 60.0%
GTCTGTAAGCGGATGGAGGG+TGG + chr1_3:5115527-5115546 None:intergenic 60.0%
GTCCACCGACGGCTCATGAT+TGG - chr1_3:5116351-5116370 Msa0099080:intron 60.0%
GGAATGCGGCTTTGCAGGCA+AGG - chr1_3:5116600-5116619 Msa0099080:five_prime_UTR 60.0%
GGCCAGCAAAGCTGAGGAGG+GGG + chr1_3:5104353-5104372 None:intergenic 65.0%
GGTTGTAGGCAGTGGGAGGG+TGG + chr1_3:5104404-5104423 None:intergenic 65.0%
GGCGGTTGTAGGCAGTGGGA+GGG + chr1_3:5104407-5104426 None:intergenic 65.0%
AGGCGGTTGTAGGCAGTGGG+AGG + chr1_3:5104408-5104427 None:intergenic 65.0%
CATCTTGGCCGGCGAGGTTG+AGG + chr1_3:5115482-5115501 None:intergenic 65.0%
CAGTGACATCTTGGCCGGCG+AGG + chr1_3:5115488-5115507 None:intergenic 65.0%
CGGATGGAGGGTGGAAAGCG+AGG + chr1_3:5115518-5115537 None:intergenic 65.0%
GGGGGAATTCGCCGCCAGGA+TGG + chr1_3:5104335-5104354 None:intergenic 70.0%
AGGAGGGGGAATTCGCCGCC+AGG + chr1_3:5104339-5104358 None:intergenic 70.0%
TGGGCCAACCACCATCCCGG+CGG - chr1_3:5115444-5115463 Msa0099080:intron 70.0%
AGGAGAGGAAGCTCGCCGCC+GGG + chr1_3:5115462-5115481 None:intergenic 70.0%
GAGGAGAGGAAGCTCGCCGC+CGG + chr1_3:5115463-5115482 None:intergenic 70.0%
TGGCCGGCGAGGTTGAGGAG+AGG + chr1_3:5115477-5115496 None:intergenic 70.0%
! CTCGCCGCCGGGATGGTGGT+TGG + chr1_3:5115451-5115470 None:intergenic 75.0%
GAAGCTCGCCGCCGGGATGG+TGG + chr1_3:5115455-5115474 None:intergenic 75.0%
GAGGAAGCTCGCCGCCGGGA+TGG + chr1_3:5115458-5115477 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 5098038 5116682 5098038 ID=Msa0099080;Name=Msa0099080
chr1_3 mRNA 5098038 5116682 5098038 ID=Msa0099080-mRNA-1;Parent=Msa0099080;Name=Msa0099080-mRNA-1;_AED=0.25;_eAED=0.26;_QI=188|0.62|0.55|1|0.62|0.55|9|0|783
chr1_3 exon 5098038 5099347 5098038 ID=Msa0099080-mRNA-1:exon:1863;Parent=Msa0099080-mRNA-1
chr1_3 exon 5106833 5106870 5106833 ID=Msa0099080-mRNA-1:exon:1862;Parent=Msa0099080-mRNA-1
chr1_3 exon 5106875 5107068 5106875 ID=Msa0099080-mRNA-1:exon:1861;Parent=Msa0099080-mRNA-1
chr1_3 exon 5112865 5113081 5112865 ID=Msa0099080-mRNA-1:exon:1860;Parent=Msa0099080-mRNA-1
chr1_3 exon 5113172 5113265 5113172 ID=Msa0099080-mRNA-1:exon:1859;Parent=Msa0099080-mRNA-1
chr1_3 exon 5113665 5113829 5113665 ID=Msa0099080-mRNA-1:exon:1858;Parent=Msa0099080-mRNA-1
chr1_3 exon 5114662 5114783 5114662 ID=Msa0099080-mRNA-1:exon:1857;Parent=Msa0099080-mRNA-1
chr1_3 exon 5116000 5116082 5116000 ID=Msa0099080-mRNA-1:exon:1856;Parent=Msa0099080-mRNA-1
chr1_3 exon 5116366 5116682 5116366 ID=Msa0099080-mRNA-1:exon:1855;Parent=Msa0099080-mRNA-1
chr1_3 five_prime_UTR 5116495 5116682 5116495 ID=Msa0099080-mRNA-1:five_prime_utr;Parent=Msa0099080-mRNA-1
chr1_3 CDS 5116366 5116494 5116366 ID=Msa0099080-mRNA-1:cds;Parent=Msa0099080-mRNA-1
chr1_3 CDS 5116000 5116082 5116000 ID=Msa0099080-mRNA-1:cds;Parent=Msa0099080-mRNA-1
chr1_3 CDS 5114662 5114783 5114662 ID=Msa0099080-mRNA-1:cds;Parent=Msa0099080-mRNA-1
chr1_3 CDS 5113665 5113829 5113665 ID=Msa0099080-mRNA-1:cds;Parent=Msa0099080-mRNA-1
chr1_3 CDS 5113172 5113265 5113172 ID=Msa0099080-mRNA-1:cds;Parent=Msa0099080-mRNA-1
chr1_3 CDS 5112865 5113081 5112865 ID=Msa0099080-mRNA-1:cds;Parent=Msa0099080-mRNA-1
chr1_3 CDS 5106875 5107068 5106875 ID=Msa0099080-mRNA-1:cds;Parent=Msa0099080-mRNA-1
chr1_3 CDS 5106833 5106870 5106833 ID=Msa0099080-mRNA-1:cds;Parent=Msa0099080-mRNA-1
chr1_3 CDS 5098038 5099347 5098038 ID=Msa0099080-mRNA-1:cds;Parent=Msa0099080-mRNA-1
Gene Sequence

>Msa0099080

ATGGCCGATTTTGTTACACAGAGGAGAATCACGATAAGAAACCACCACGGTGAAAATCTCGTTGGTATATTACACGATGCATCTTCCACAGCACTTGTTATTGTTTGCCATGGTTTTCAATCTTCCAAGGAAAGGATTCCCATGGTGAACATTGCTGCTGCTCTGGAAAAGAATGGAATCAGTGCCTTCCGCTTTGACTTCGCCGGAAATGGGGAAAGTGAAGGTTCATTTCAGTATGGTAACTACTACAGAGAAGTCGAAGACCTGCGAGCTATTGTCCAACACTTCCGTGAGGAGAAATATGTAGTTACTGCAATTGTTGGTCATAGTAAAGGGGGTAATGTGGTTCTGTTATATGCCTCAAAATATAAGGATATTCATACAGTTGTCAATATATCTGGCCGATTTAACCTTGCAAGAGGAATGGAGAGTCGCTTGGGTGAAAATTTTATACAAAGGATCAAACAAGATGGATTTATAGATGTTAAAAATAAAAGAGGGAAGATTGTGTTTCGAGTTACTGAAGAAAGTTTAATGGACCGTCTAAACACTATTACCCATCTTGCATGCTTAAAAATCCCTAAAAATTGCAGGGTGTTGACAGTTCATGGATCCATGGATGAAACTGTACCGGCAGAAGATGCTTTAGAGTTTGCTAAGTTCATACTGAATCATGAACTGCACATCATAGAAGGGGCTGATCATGAATATACTTATCATCAAGATGAATTGACAAGCTTAGTTTTGGGTTTTATCAAGTTTCATAATAATAAGGAAAACAATACATCTAAGCAGACGTGCTTTGGAAGAGGTGTTGACAGTTCAGAATCCATGGATGAAACTATACCCGCAGAAGATGCTTTAGAGTTTGCTAACATATCGAATCATAAACTGCGCATCATAGAAGGGGCTGGCATTGAATATACTTGTCATCAAGATGAATTGACAAGCTTAGTTGTGGAATTTATCAAGGTTAATAATGACAAGGAAAACAATACATCCAAACACGATTTGGAAGAGGAGATAAACCTTTCCATTCACGAACTTCAAAAACACAACACTCGCGGCGATGCATGGATCTCCATTGACGGCAAGATCTACGACGTTTCAAAATGGGCCAACCACCATCCCGGCGGCGAGCTTCCTCTCCTCAACCTCGCCGGCCAAGATGTCACTGATGCATTCCTCGCTTTCCACCCTCCATCCGCTTACAGACATCTCCAAAACTTTGCCACTGGCAGTTACCTACGTGACTACGTCGTCTCTGACGTGTCACGTGACTATCGTGCCCTTTTCTCCGAACTAACCAAACTGGGTTTGTTCGAAGAAAAAGGACACGGTGTTTTAGTTTTACTATCCATAATTTCTGTTATGTTCTTTGTCAGTGTTTATGGTGTTTTGTTTTGTGAAAGCGCGTTAGTGCACGTGCTTTCTGGAGGATTAATGGGTCTTCTTTGGATTCAAAGTGGTTGGATTGGTCATGATTCTGGTCATTATCAGGTTATGGTTAACCGGAAATGGAATCAGTTTATGCAGATTCTTTCTGGTAATGTTCTTGCTGGTATAAGCATTGAATGGTGGAAATGGAATCATAATGCACACCATCTTGCTTGTAATAGTCTTGATTTTGATCCTGATCTTCAACATTTACCATTTTTTGTTGTTTCGTCGAAGTTCTTTACTTCGCTTACTTCTTGTTTTTATGGAAGAAAGATGAATTTTGATTCTTTTGCTAGGTTCTTGGTCAGTTACCAGCATTGGAGTTATTATCCTGTGATGTGTTTTGCTAGGCTTAATTTGTTTGCACAATCTTTCTTTTTGTTGTTTTCTAATAGAAAAGTGCCTAATAGAAAGATGGAACTTTTAGGGTTGGCTCTGTTTTGGATTTGGTACCCTTTGTTGGTTTCTTGTTTACCTAATTGGGGTGAGAGGGTTTTGTTTGTTCTTGCTAGTTTTTGTGTGACTGGGATTCAACATGTTCAGTTTACTTTGAATCATTTTTCGGCTAGTGTTTATGTTGGTCCACCGACGGCTCATGATTGGTTTGAGAAGCAAGCTCATGGAACTCTTGATGTGAAGTGTTCTTCTTGGATGGATTGGTTTCATGGTGGTTTGCAGTTTCAGATTGAACATCATTTGTTTCCGCGTCTTCCACGGTGTAATTTGAGGAAGATTTCGCCTTTGGTTAAGGATCTGTGCAAGAAACATAACCTTCCTTACAATTGTGTGTCTTTCTGGAAGGCTAATGTGCTTACTATTCAGACTTTGAGGAATGCGGCTTTGCAGGCAAGGGATCTTACTAAACCGGTTCCGAGAAATTTAGTTTGGGAAGCTGTTAATACTCATGGATGA
Protein sequence

>Msa0099080

MADFVTQRRITIRNHHGENLVGILHDASSTALVIVCHGFQSSKERIPMVNIAAALEKNGISAFRFDFAGNGESEGSFQYGNYYREVEDLRAIVQHFREEKYVVTAIVGHSKGGNVVLLYASKYKDIHTVVNISGRFNLARGMESRLGENFIQRIKQDGFIDVKNKRGKIVFRVTEESLMDRLNTITHLACLKIPKNCRVLTVHGSMDETVPAEDALEFAKFILNHELHIIEGADHEYTYHQDELTSLVLGFIKFHNNKENNTSKQTCFGRGVDSSESMDETIPAEDALEFANISNHKLRIIEGAGIEYTCHQDELTSLVVEFIKVNNDKENNTSKHDLEEEINLSIHELQKHNTRGDAWISIDGKIYDVSKWANHHPGGELPLLNLAGQDVTDAFLAFHPPSAYRHLQNFATGSYLRDYVVSDVSRDYRALFSELTKLGLFEEKGHGVLVLLSIISVMFFVSVYGVLFCESALVHVLSGGLMGLLWIQSGWIGHDSGHYQVMVNRKWNQFMQILSGNVLAGISIEWWKWNHNAHHLACNSLDFDPDLQHLPFFVVSSKFFTSLTSCFYGRKMNFDSFARFLVSYQHWSYYPVMCFARLNLFAQSFFLLFSNRKVPNRKMELLGLALFWIWYPLLVSCLPNWGERVLFVLASFCVTGIQHVQFTLNHFSASVYVGPPTAHDWFEKQAHGTLDVKCSSWMDWFHGGLQFQIEHHLFPRLPRCNLRKISPLVKDLCKKHNLPYNCVSFWKANVLTIQTLRNAALQARDLTKPVPRNLVWEAVNTHG*