Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100140 | sp|Q6P011|EMC4_DANRE | 32.941 | 170 | 81 | 6 | 14 | 156 | 24 | 187 | 4.64e-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100140 | G7I7L8 | 88.764 | 178 | 1 | 1 | 1 | 159 | 1 | 178 | 7.43e-107 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0099910 | Msa0100140 | 0.862971 | 3.471706e-64 | -8.615850e-47 |
| Msa0099940 | Msa0100140 | 0.842020 | 3.336390e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100140 | MtrunA17_Chr8g0347021 | 82.353 | 119 | 2 | 1 | 60 | 159 | 28 | 146 | 9.35e-64 | 192 |
| Msa0100140 | MtrunA17_Chr8g0347341 | 83.051 | 118 | 1 | 1 | 61 | 159 | 179 | 296 | 1.51e-61 | 191 |
| Msa0100140 | MtrunA17_Chr8g0347341 | 92.063 | 63 | 5 | 0 | 1 | 63 | 1 | 63 | 3.48e-34 | 121 |
| Msa0100140 | MtrunA17_Chr1g0150351 | 89.320 | 103 | 0 | 1 | 1 | 92 | 1 | 103 | 2.52e-60 | 183 |
| Msa0100140 | MtrunA17_Chr8g0347031 | 93.651 | 63 | 4 | 0 | 1 | 63 | 1 | 63 | 1.12e-36 | 121 |
| Msa0100140 | MtrunA17_Chr8g0347041 | 92.063 | 63 | 5 | 0 | 1 | 63 | 1 | 63 | 1.31e-34 | 120 |
| Msa0100140 | MtrunA17_Chr1g0150341 | 94.737 | 57 | 3 | 0 | 91 | 147 | 5 | 61 | 2.85e-33 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100140 | AT5G10780.1 | 71.271 | 181 | 29 | 3 | 1 | 159 | 1 | 180 | 1.49e-69 | 208 |
| Msa0100140 | AT5G10780.2 | 71.598 | 169 | 25 | 3 | 1 | 147 | 1 | 168 | 3.08e-63 | 192 |
Find 88 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTCTTGGAGGAATTTA+AGG | 0.091841 | 1_3:-6668919 | Msa0100140:three_prime_UTR |
| GGTATTCATCGCCCTTAATT+TGG | 0.174653 | 1_3:-6670143 | Msa0100140:CDS |
| TACTGCAAATCTGATGTAAA+AGG | 0.202542 | 1_3:-6668676 | Msa0100140:three_prime_UTR |
| ATCATTAACAAGTTCTTAAA+TGG | 0.219625 | 1_3:+6671183 | None:intergenic |
| GTAACATGCCTCCCAAATTA+AGG | 0.244098 | 1_3:+6670131 | None:intergenic |
| TGAATCAGGTATACAAAATA+TGG | 0.280008 | 1_3:-6668523 | Msa0100140:three_prime_UTR |
| CTTGGAGGAATTTAAGGATT+TGG | 0.280619 | 1_3:-6668913 | Msa0100140:three_prime_UTR |
| TGGATTCAGCATCTTTCTTT+TGG | 0.301710 | 1_3:+6671677 | None:intergenic |
| CTGAAAGAACAATAAGAATT+CGG | 0.312632 | 1_3:+6668596 | None:intergenic |
| TAACCTTCCCATTGTGAATC+AGG | 0.329413 | 1_3:-6668537 | Msa0100140:three_prime_UTR |
| TCTTCTGCAGCTCAATTCAT+TGG | 0.332546 | 1_3:-6669733 | Msa0100140:intron |
| CTTTGTATCTCTTTGTATGT+AGG | 0.333936 | 1_3:-6668738 | Msa0100140:three_prime_UTR |
| ATTCACAATGGGAAGGTTAC+AGG | 0.340824 | 1_3:+6668541 | None:intergenic |
| AAGGGTGTGATGGGATCTTC+TGG | 0.346236 | 1_3:-6671808 | Msa0100140:CDS |
| GTATTCATCGCCCTTAATTT+GGG | 0.348550 | 1_3:-6670142 | Msa0100140:CDS |
| TACAAACCATGTCTAATCTT+TGG | 0.367592 | 1_3:+6668800 | None:intergenic |
| CTCTTTCATTCATTCATAGT+TGG | 0.368002 | 1_3:-6671923 | Msa0100140:five_prime_UTR |
| GATGCTAAAGTGGAGCTTCT+TGG | 0.369452 | 1_3:-6670175 | Msa0100140:CDS |
| AATAGCATACTAGAAATGTT+AGG | 0.385259 | 1_3:-6668652 | Msa0100140:three_prime_UTR |
| ATTTAAGAACTTGTTAATGA+TGG | 0.394212 | 1_3:-6671181 | Msa0100140:CDS |
| ATCGCGAGAAGTTGAATTAT+CGG | 0.394794 | 1_3:+6671762 | None:intergenic |
| GAGGGAAGCGCGTGAGAAAC+CGG | 0.398618 | 1_3:+6671726 | None:intergenic |
| AATTTGGGAGGCATGTTACT+AGG | 0.402445 | 1_3:-6670127 | Msa0100140:CDS |
| GAGGCATGTTACTAGGTGTT+TGG | 0.405795 | 1_3:-6670120 | Msa0100140:CDS |
| CGATTCAATTCAATGGATAA+AGG | 0.406344 | 1_3:-6671832 | Msa0100140:exon |
| ATGCTAAAGTGGAGCTTCTT+GGG | 0.409851 | 1_3:-6670174 | Msa0100140:CDS |
| TCCACTTTAGCATCTTTGTA+AGG | 0.413449 | 1_3:+6670184 | None:intergenic |
| TGAAAGAACAATAAGAATTC+GGG | 0.413709 | 1_3:+6668597 | None:intergenic |
| CTTCTGCAGCTCAATTCATT+GGG | 0.415950 | 1_3:-6669732 | Msa0100140:intron |
| TCTTCAGCGATTCAATTCAA+TGG | 0.418706 | 1_3:-6671839 | Msa0100140:exon |
| TGGTCACAAATGATCTCATT+AGG | 0.422294 | 1_3:-6668871 | Msa0100140:three_prime_UTR |
| AAGAATGAGTGAAGAGAAGA+AGG | 0.424461 | 1_3:+6671858 | None:intergenic |
| ATTGTTGGAAACAGAAAGCT+TGG | 0.427332 | 1_3:-6671221 | Msa0100140:intron |
| TTTAAGAACTTGTTAATGAT+GGG | 0.445845 | 1_3:-6671180 | Msa0100140:CDS |
| AGAAAGATGCTGAATCCAAT+TGG | 0.446637 | 1_3:-6671672 | Msa0100140:CDS |
| ATAGCATACTAGAAATGTTA+GGG | 0.456027 | 1_3:-6668651 | Msa0100140:three_prime_UTR |
| TAACATGCCTCCCAAATTAA+GGG | 0.464691 | 1_3:+6670132 | None:intergenic |
| GGGTTTATGATGTGGATGGC+TGG | 0.475763 | 1_3:-6671159 | Msa0100140:CDS |
| AACATAGACATTTAAAAGAA+AGG | 0.477427 | 1_3:+6668570 | None:intergenic |
| TTCCTACCCACACATCAGAC+TGG | 0.494006 | 1_3:-6669704 | Msa0100140:CDS |
| TGGGATCTTCTGGACGAAGA+TGG | 0.499581 | 1_3:-6671798 | Msa0100140:CDS |
| TGAATCCAATTGGAAATCTC+AGG | 0.499594 | 1_3:-6671662 | Msa0100140:intron |
| AAAGAAAATCCAACCTGAGC+AGG | 0.500189 | 1_3:+6669666 | None:intergenic |
| TCTTTGGTGACTGCAAGTAT+TGG | 0.501455 | 1_3:+6668816 | None:intergenic |
| TTGTATACCTGATTCACAAT+GGG | 0.505768 | 1_3:+6668530 | None:intergenic |
| CAGGAGGTGGAGTACTCAGG+TGG | 0.509179 | 1_3:-6668984 | Msa0100140:CDS |
| GTCATCCTTAGCACCTGCTC+AGG | 0.516236 | 1_3:-6669679 | Msa0100140:intron |
| GTACTGTTAGCATGTTGTAA+TGG | 0.518335 | 1_3:-6668891 | Msa0100140:three_prime_UTR |
| GATAAAGGAAAGGGTGTGAT+GGG | 0.521901 | 1_3:-6671817 | Msa0100140:CDS |
| CTTCAGGAGGTGGAGTACTC+AGG | 0.524189 | 1_3:-6668987 | Msa0100140:intron |
| GAGGTGGAGTACTCAGGTGG+GGG | 0.524742 | 1_3:-6668981 | Msa0100140:CDS |
| GGAGCTTCTTGGGCCTAAGT+TGG | 0.528352 | 1_3:-6670164 | Msa0100140:CDS |
| CGCGATATTATCGATCCTCC+CGG | 0.529746 | 1_3:-6671745 | Msa0100140:CDS |
| ACCTTACAAAGATGCTAAAG+TGG | 0.529869 | 1_3:-6670185 | Msa0100140:CDS |
| GGGATCTTCTGGACGAAGAT+GGG | 0.531311 | 1_3:-6671797 | Msa0100140:CDS |
| ACTGTTCACTTGTTTAGCAT+CGG | 0.532087 | 1_3:-6671132 | Msa0100140:intron |
| GCATACCTGAGATTTCCAAT+TGG | 0.533753 | 1_3:+6671657 | None:intergenic |
| AGGAGGTGGAGTACTCAGGT+GGG | 0.535718 | 1_3:-6668983 | Msa0100140:CDS |
| CATGTTACTAGGTGTTTGGA+AGG | 0.537062 | 1_3:-6670116 | Msa0100140:intron |
| GAAAGCTTGGGAAGTTGCAC+AGG | 0.537408 | 1_3:-6671208 | Msa0100140:CDS |
| TCCAACCTGAGCAGGTGCTA+AGG | 0.537452 | 1_3:+6669674 | None:intergenic |
| CAGTCACCAAAGATTAGACA+TGG | 0.538585 | 1_3:-6668806 | Msa0100140:three_prime_UTR |
| GGATAAAGGAAAGGGTGTGA+TGG | 0.543038 | 1_3:-6671818 | Msa0100140:CDS |
| CTTAAGAACTGGAGCATCAA+CGG | 0.547901 | 1_3:+6668949 | None:intergenic |
| AATTCAATGGATAAAGGAAA+GGG | 0.549939 | 1_3:-6671826 | Msa0100140:exon |
| GGAGGTGGAGTACTCAGGTG+GGG | 0.550312 | 1_3:-6668982 | Msa0100140:CDS |
| TCCTACCCACACATCAGACT+GGG | 0.552562 | 1_3:-6669703 | Msa0100140:CDS |
| AGGGCGATGAATACCAACTT+AGG | 0.558217 | 1_3:+6670151 | None:intergenic |
| AGGGAAGCGCGTGAGAAACC+GGG | 0.558868 | 1_3:+6671727 | None:intergenic |
| CAATTCAATGGATAAAGGAA+AGG | 0.565610 | 1_3:-6671827 | Msa0100140:exon |
| TTGTTGGAAACAGAAAGCTT+GGG | 0.565750 | 1_3:-6671220 | Msa0100140:intron |
| TTTGTATACCTGATTCACAA+TGG | 0.566086 | 1_3:+6668529 | None:intergenic |
| TTAAGAACTTGTTAATGATG+GGG | 0.568371 | 1_3:-6671179 | Msa0100140:CDS |
| TTCATCGCCCTTAATTTGGG+AGG | 0.578157 | 1_3:-6670139 | Msa0100140:CDS |
| GGTAGAATCGTCTTGATCGA+GGG | 0.585755 | 1_3:+6671708 | None:intergenic |
| AGAATGAGTGAAGAGAAGAA+GGG | 0.591696 | 1_3:+6671859 | None:intergenic |
| TAATGATGGGGTTTATGATG+TGG | 0.592983 | 1_3:-6671167 | Msa0100140:CDS |
| GGGTAGAATCGTCTTGATCG+AGG | 0.613210 | 1_3:+6671707 | None:intergenic |
| TGAATTATCGGAGAAATCAA+CGG | 0.616548 | 1_3:+6671774 | None:intergenic |
| ATACCTGATTCACAATGGGA+AGG | 0.633822 | 1_3:+6668534 | None:intergenic |
| ACATACAAAGAGATACAAAG+AGG | 0.639704 | 1_3:+6668741 | None:intergenic |
| GATGGGGTTTATGATGTGGA+TGG | 0.644891 | 1_3:-6671163 | Msa0100140:CDS |
| CATACTAGAAATGTTAGGGG+AGG | 0.666754 | 1_3:-6668647 | Msa0100140:three_prime_UTR |
| TGACACCCAGTCTGATGTGT+GGG | 0.677476 | 1_3:+6669698 | None:intergenic |
| TAGCATACTAGAAATGTTAG+GGG | 0.703626 | 1_3:-6668650 | Msa0100140:three_prime_UTR |
| ATGACACCCAGTCTGATGTG+TGG | 0.709294 | 1_3:+6669697 | None:intergenic |
| GAAGCGCGTGAGAAACCGGG+AGG | 0.725314 | 1_3:+6671730 | None:intergenic |
| ACCCAGTCTGATGTGTGGGT+AGG | 0.740029 | 1_3:+6669702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGATTAATTATATTGT+TGG | - | chr1_3:6669203-6669222 | Msa0100140:intron | 10.0% |
| !! | GAAAAATAATAATAAGTATA+TGG | + | chr1_3:6670665-6670684 | None:intergenic | 10.0% |
| !! | AAAATACAGAAATTATACAT+AGG | + | chr1_3:6668858-6668877 | None:intergenic | 15.0% |
| !! | TATTTAACAAAACAACAAAA+AGG | + | chr1_3:6669418-6669437 | None:intergenic | 15.0% |
| !! | TTTATATTATGGATGAAATT+AGG | - | chr1_3:6669638-6669657 | Msa0100140:intron | 15.0% |
| !! | TATGTTCTATAATATATTTG+AGG | - | chr1_3:6670575-6670594 | Msa0100140:intron | 15.0% |
| !! | TTGTATGTTATTAAAATGTT+TGG | - | chr1_3:6670966-6670985 | Msa0100140:intron | 15.0% |
| !! | TGTATGTTATTAAAATGTTT+GGG | - | chr1_3:6670967-6670986 | Msa0100140:intron | 15.0% |
| !! | TTTGAAAATAAATCTATAAC+TGG | - | chr1_3:6671305-6671324 | Msa0100140:intron | 15.0% |
| !!! | AAAAAAAATCTATAACTTGT+TGG | - | chr1_3:6671338-6671357 | Msa0100140:intron | 15.0% |
| !! | AGTTACAATAATTAGTTACA+TGG | + | chr1_3:6669129-6669148 | None:intergenic | 20.0% |
| !! | ATCATTAACAAGTTCTTAAA+TGG | + | chr1_3:6669259-6669278 | None:intergenic | 20.0% |
| !!! | ATTTAAGAACTTGTTAATGA+TGG | - | chr1_3:6669258-6669277 | Msa0100140:intron | 20.0% |
| !!! | TTTAAGAACTTGTTAATGAT+GGG | - | chr1_3:6669259-6669278 | Msa0100140:intron | 20.0% |
| !! | CAATGTTGATATTATTAGAA+TGG | + | chr1_3:6669500-6669519 | None:intergenic | 20.0% |
| !! | ATACAATTACAATCATTGAA+TGG | + | chr1_3:6669552-6669571 | None:intergenic | 20.0% |
| !!! | GAGGTTGATTATTTATATTA+TGG | - | chr1_3:6669627-6669646 | Msa0100140:intron | 20.0% |
| !!! | CTTAATATGTATTTGTTGAA+TGG | - | chr1_3:6669914-6669933 | Msa0100140:intron | 20.0% |
| !!! | GAACACTTTATTTTAAATTG+TGG | - | chr1_3:6670070-6670089 | Msa0100140:intron | 20.0% |
| !!! | TTTAACTCATTTTTGTTTCA+AGG | + | chr1_3:6670359-6670378 | None:intergenic | 20.0% |
| !!! | TTACCTCAAATTTTAAGTTT+TGG | - | chr1_3:6670520-6670539 | Msa0100140:intron | 20.0% |
| !!! | CTATAATATATTTGAGGTTT+AGG | - | chr1_3:6670581-6670600 | Msa0100140:intron | 20.0% |
| !! | TTAATAACATACAATGCTAT+GGG | + | chr1_3:6670960-6670979 | None:intergenic | 20.0% |
| !! | TTTAATAACATACAATGCTA+TGG | + | chr1_3:6670961-6670980 | None:intergenic | 20.0% |
| !!! | TGGTTTTTTTTTTTTTTCCT+GGG | + | chr1_3:6671009-6671028 | None:intergenic | 20.0% |
| !!! | CATTATTTCTGATATTAAAG+TGG | + | chr1_3:6671279-6671298 | None:intergenic | 20.0% |
| !!! | AGTTATAGATTTTTTTTCAG+TGG | + | chr1_3:6671335-6671354 | None:intergenic | 20.0% |
| !! | AACATAGACATTTAAAAGAA+AGG | + | chr1_3:6671872-6671891 | None:intergenic | 20.0% |
| ! | AATTCAATGGATAAAGGAAA+GGG | - | chr1_3:6668613-6668632 | Msa0100140:three_prime_UTR | 25.0% |
| ! | TCAACTGATAATAAACGAAA+GGG | + | chr1_3:6668992-6669011 | None:intergenic | 25.0% |
| !! | AACAATCGTAAATAGTTTGT+TGG | + | chr1_3:6669034-6669053 | None:intergenic | 25.0% |
| ! | CATCTGATTGTAATTGTTTA+AGG | - | chr1_3:6669157-6669176 | Msa0100140:intron | 25.0% |
| !!! | TTAAGAACTTGTTAATGATG+GGG | - | chr1_3:6669260-6669279 | Msa0100140:intron | 25.0% |
| ! | AAAGAAAAATAAAGTCGAAC+TGG | - | chr1_3:6669736-6669755 | Msa0100140:intron | 25.0% |
| ! | ATCTTATGAAAACAACGTAT+AGG | + | chr1_3:6669772-6669791 | None:intergenic | 25.0% |
| ! | TATAAGCTGAAAACAACTTA+TGG | - | chr1_3:6669811-6669830 | Msa0100140:intron | 25.0% |
| !! | TATTTGTTGAATGGAATCAT+TGG | - | chr1_3:6669923-6669942 | Msa0100140:intron | 25.0% |
| ! | AAAATATGTAATTGCGTGTT+TGG | - | chr1_3:6670009-6670028 | Msa0100140:intron | 25.0% |
| ! | TTTCAAGAATTGTGAAAAGA+TGG | - | chr1_3:6670163-6670182 | Msa0100140:CDS | 25.0% |
| ! | ATTGATAAACTCTTGATTCT+AGG | - | chr1_3:6670453-6670472 | Msa0100140:intron | 25.0% |
| ! | TTGATAAACTCTTGATTCTA+GGG | - | chr1_3:6670454-6670473 | Msa0100140:intron | 25.0% |
| ! | ACAAAACCATGTATATACTT+AGG | + | chr1_3:6670500-6670519 | None:intergenic | 25.0% |
| ! | GAACCAAAACTTAAAATTTG+AGG | + | chr1_3:6670526-6670545 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGGTTCATTTTGT+TGG | - | chr1_3:6670533-6670552 | Msa0100140:intron | 25.0% |
| ! | ATTCTCAAGTTTGAAAATCT+TGG | - | chr1_3:6670637-6670656 | Msa0100140:intron | 25.0% |
| !! | TTCAGAGGACTAAAATATTT+TGG | + | chr1_3:6670837-6670856 | None:intergenic | 25.0% |
| !!! | CGTTTTAATTAATGTTTCAG+AGG | + | chr1_3:6670852-6670871 | None:intergenic | 25.0% |
| !! | ACATAATTTTACTGTCTTCA+AGG | - | chr1_3:6670877-6670896 | Msa0100140:intron | 25.0% |
| !!! | CTGGTTTTTTTTTTTTTTCC+TGG | + | chr1_3:6671010-6671029 | None:intergenic | 25.0% |
| ! | GGAAAAAAAAAAAAAACCAG+AGG | - | chr1_3:6671010-6671029 | Msa0100140:intron | 25.0% |
| !! | TTGCTTTATTGAGATGAAAT+TGG | - | chr1_3:6671067-6671086 | Msa0100140:intron | 25.0% |
| ! | ATTTATACACCAAATGATTG+TGG | + | chr1_3:6671165-6671184 | None:intergenic | 25.0% |
| ! | ACTTAAAGAAAAGAAACCAA+GGG | + | chr1_3:6671409-6671428 | None:intergenic | 25.0% |
| ! | AAGACAAAAAACTTAAGAAC+TGG | + | chr1_3:6671504-6671523 | None:intergenic | 25.0% |
| !!! | TTAAGTTTTTTGTCTTCTCT+TGG | - | chr1_3:6671508-6671527 | Msa0100140:intron | 25.0% |
| ! | AATAGCATACTAGAAATGTT+AGG | - | chr1_3:6671787-6671806 | Msa0100140:CDS | 25.0% |
| ! | ATAGCATACTAGAAATGTTA+GGG | - | chr1_3:6671788-6671807 | Msa0100140:CDS | 25.0% |
| ! | TGAAAGAACAATAAGAATTC+GGG | + | chr1_3:6671845-6671864 | None:intergenic | 25.0% |
| ! | CTGAAAGAACAATAAGAATT+CGG | + | chr1_3:6671846-6671865 | None:intergenic | 25.0% |
| ! | TGAATCAGGTATACAAAATA+TGG | - | chr1_3:6671916-6671935 | Msa0100140:five_prime_UTR | 25.0% |
| CGATTCAATTCAATGGATAA+AGG | - | chr1_3:6668607-6668626 | Msa0100140:three_prime_UTR | 30.0% | |
| CAATTCAATGGATAAAGGAA+AGG | - | chr1_3:6668612-6668631 | Msa0100140:three_prime_UTR | 30.0% | |
| TGAATTATCGGAGAAATCAA+CGG | + | chr1_3:6668668-6668687 | None:intergenic | 30.0% | |
| CTCAACTGATAATAAACGAA+AGG | + | chr1_3:6668993-6669012 | None:intergenic | 30.0% | |
| TGGAGTAGTACTTATTAGAT+CGG | + | chr1_3:6669109-6669128 | None:intergenic | 30.0% | |
| ACAAAACAACAAAAAGGAAG+CGG | + | chr1_3:6669412-6669431 | None:intergenic | 30.0% | |
| ! | TGGATGAAATTAGGTTTGTT+TGG | - | chr1_3:6669647-6669666 | Msa0100140:intron | 30.0% |
| ATACATATTAAGACCCTGTT+TGG | + | chr1_3:6669906-6669925 | None:intergenic | 30.0% | |
| !! | TTGGTTTGTTGTAACTCATT+AGG | - | chr1_3:6669974-6669993 | Msa0100140:intron | 30.0% |
| ! | CTTGCGATGTTAAATCTTTT+AGG | - | chr1_3:6670093-6670112 | Msa0100140:intron | 30.0% |
| TATCAGCCTAAGTATATACA+TGG | - | chr1_3:6670491-6670510 | Msa0100140:intron | 30.0% | |
| ! | GTTCATTTTGTTGGATAGTT+GGG | - | chr1_3:6670542-6670561 | Msa0100140:intron | 30.0% |
| CTTACTACAAGTAATTTCTG+TGG | - | chr1_3:6671112-6671131 | Msa0100140:intron | 30.0% | |
| GTGGTTCATCTATATTATTC+TGG | + | chr1_3:6671146-6671165 | None:intergenic | 30.0% | |
| ATAGATGAACCACAATCATT+TGG | - | chr1_3:6671153-6671172 | Msa0100140:CDS | 30.0% | |
| AATCTACCAATTCTTCACTA+TGG | + | chr1_3:6671201-6671220 | None:intergenic | 30.0% | |
| AAATCACAAAAGGATGAAGT+AGG | + | chr1_3:6671371-6671390 | None:intergenic | 30.0% | |
| CACTTAAAGAAAAGAAACCA+AGG | + | chr1_3:6671410-6671429 | None:intergenic | 30.0% | |
| !!! | ACCTTACTTTTTGTATCTTC+AGG | - | chr1_3:6671436-6671455 | Msa0100140:intron | 30.0% |
| TCCTGAAGATACAAAAAGTA+AGG | + | chr1_3:6671440-6671459 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTGTATCTTCAGG+AGG | - | chr1_3:6671439-6671458 | Msa0100140:intron | 30.0% |
| TACAAACCATGTCTAATCTT+TGG | + | chr1_3:6671642-6671661 | None:intergenic | 30.0% | |
| ACATACAAAGAGATACAAAG+AGG | + | chr1_3:6671701-6671720 | None:intergenic | 30.0% | |
| CTTTGTATCTCTTTGTATGT+AGG | - | chr1_3:6671701-6671720 | Msa0100140:CDS | 30.0% | |
| TACTGCAAATCTGATGTAAA+AGG | - | chr1_3:6671763-6671782 | Msa0100140:CDS | 30.0% | |
| TAGCATACTAGAAATGTTAG+GGG | - | chr1_3:6671789-6671808 | Msa0100140:CDS | 30.0% | |
| !!! | AGGAGAATTTTTTTAGCAGT+GGG | - | chr1_3:6671812-6671831 | Msa0100140:CDS | 30.0% |
| TTGTATACCTGATTCACAAT+GGG | + | chr1_3:6671912-6671931 | None:intergenic | 30.0% | |
| TTTGTATACCTGATTCACAA+TGG | + | chr1_3:6671913-6671932 | None:intergenic | 30.0% | |
| AGAATGAGTGAAGAGAAGAA+GGG | + | chr1_3:6668583-6668602 | None:intergenic | 35.0% | |
| AAGAATGAGTGAAGAGAAGA+AGG | + | chr1_3:6668584-6668603 | None:intergenic | 35.0% | |
| TCTTCAGCGATTCAATTCAA+TGG | - | chr1_3:6668600-6668619 | Msa0100140:three_prime_UTR | 35.0% | |
| ATCGCGAGAAGTTGAATTAT+CGG | + | chr1_3:6668680-6668699 | None:intergenic | 35.0% | |
| ! | ATCTTTCTTTTGGCGACTAA+GGG | + | chr1_3:6668755-6668774 | None:intergenic | 35.0% |
| ! | TGGATTCAGCATCTTTCTTT+TGG | + | chr1_3:6668765-6668784 | None:intergenic | 35.0% |
| AGAAAGATGCTGAATCCAAT+TGG | - | chr1_3:6668767-6668786 | Msa0100140:three_prime_UTR | 35.0% | |
| TGAATCCAATTGGAAATCTC+AGG | - | chr1_3:6668777-6668796 | Msa0100140:three_prime_UTR | 35.0% | |
| ACTGATAATAAACGAAAGGG+AGG | + | chr1_3:6668989-6669008 | None:intergenic | 35.0% | |
| ATTGTTGGAAACAGAAAGCT+TGG | - | chr1_3:6669218-6669237 | Msa0100140:intron | 35.0% | |
| TTGTTGGAAACAGAAAGCTT+GGG | - | chr1_3:6669219-6669238 | Msa0100140:intron | 35.0% | |
| ! | TAATGATGGGGTTTATGATG+TGG | - | chr1_3:6669272-6669291 | Msa0100140:intron | 35.0% |
| ACTGTTCACTTGTTTAGCAT+CGG | - | chr1_3:6669307-6669326 | Msa0100140:intron | 35.0% | |
| !! | ACTTTTTCCAACACTCTGTA+AGG | + | chr1_3:6669368-6669387 | None:intergenic | 35.0% |
| TTGAATGGAGAGATTCAGTA+AGG | + | chr1_3:6669537-6669556 | None:intergenic | 35.0% | |
| CTTGATGTCTATAGATAACG+AGG | - | chr1_3:6669608-6669627 | Msa0100140:intron | 35.0% | |
| AAGATATCCTAGTGAGCTTA+TGG | - | chr1_3:6669787-6669806 | Msa0100140:intron | 35.0% | |
| CTTATATCCATAAGCTCACT+AGG | + | chr1_3:6669797-6669816 | None:intergenic | 35.0% | |
| ! | GTCAGTCTCATAATTGCTTT+TGG | - | chr1_3:6669854-6669873 | Msa0100140:intron | 35.0% |
| TCAAATAAGTCGATCCAAAC+AGG | - | chr1_3:6669889-6669908 | Msa0100140:intron | 35.0% | |
| CAAATAAGTCGATCCAAACA+GGG | - | chr1_3:6669890-6669909 | Msa0100140:intron | 35.0% | |
| AACCAAAAGAGAAGAGAACT+GGG | + | chr1_3:6669960-6669979 | None:intergenic | 35.0% | |
| AAACCAAAAGAGAAGAGAAC+TGG | + | chr1_3:6669961-6669980 | None:intergenic | 35.0% | |
| !!! | TCTTTTAGGACCTTTGCAAT+TGG | - | chr1_3:6670107-6670126 | Msa0100140:intron | 35.0% |
| ACCTTACAAAGATGCTAAAG+TGG | - | chr1_3:6670254-6670273 | Msa0100140:intron | 35.0% | |
| TCCACTTTAGCATCTTTGTA+AGG | + | chr1_3:6670258-6670277 | None:intergenic | 35.0% | |
| GTATTCATCGCCCTTAATTT+GGG | - | chr1_3:6670297-6670316 | Msa0100140:intron | 35.0% | |
| TAACATGCCTCCCAAATTAA+GGG | + | chr1_3:6670310-6670329 | None:intergenic | 35.0% | |
| ! | GGTTCATTTTGTTGGATAGT+TGG | - | chr1_3:6670541-6670560 | Msa0100140:intron | 35.0% |
| AGGCAGTAACATGAATAACA+GGG | + | chr1_3:6670687-6670706 | None:intergenic | 35.0% | |
| ! | CTTCAAGGTATTATGACAAG+AGG | - | chr1_3:6670892-6670911 | Msa0100140:intron | 35.0% |
| TAACATACAATGCTATGGGT+AGG | + | chr1_3:6670956-6670975 | None:intergenic | 35.0% | |
| CATATGCCATAGTGAAGAAT+TGG | - | chr1_3:6671192-6671211 | Msa0100140:CDS | 35.0% | |
| !!! | AGTTTTTTGTCTTCTCTTGG+AGG | - | chr1_3:6671511-6671530 | Msa0100140:intron | 35.0% |
| TCTTCTCTTGGAGGAATTTA+AGG | - | chr1_3:6671520-6671539 | Msa0100140:intron | 35.0% | |
| CTTGGAGGAATTTAAGGATT+TGG | - | chr1_3:6671526-6671545 | Msa0100140:intron | 35.0% | |
| GTACTGTTAGCATGTTGTAA+TGG | - | chr1_3:6671548-6671567 | Msa0100140:intron | 35.0% | |
| TGGTCACAAATGATCTCATT+AGG | - | chr1_3:6671568-6671587 | Msa0100140:intron | 35.0% | |
| !!! | GAGGAGAATTTTTTTAGCAG+TGG | - | chr1_3:6671811-6671830 | Msa0100140:CDS | 35.0% |
| !!! | GGAGAATTTTTTTAGCAGTG+GGG | - | chr1_3:6671813-6671832 | Msa0100140:CDS | 35.0% |
| ! | GATAAAGGAAAGGGTGTGAT+GGG | - | chr1_3:6668622-6668641 | Msa0100140:three_prime_UTR | 40.0% |
| ! | CATCTTTCTTTTGGCGACTA+AGG | + | chr1_3:6668756-6668775 | None:intergenic | 40.0% |
| GCATACCTGAGATTTCCAAT+TGG | + | chr1_3:6668785-6668804 | None:intergenic | 40.0% | |
| ATCAGTTGAGATGTGAGATG+TGG | - | chr1_3:6669003-6669022 | Msa0100140:intron | 40.0% | |
| TCAGTTGAGATGTGAGATGT+GGG | - | chr1_3:6669004-6669023 | Msa0100140:intron | 40.0% | |
| ! | ACACTCTGTAAGGCACTTAT+GGG | + | chr1_3:6669358-6669377 | None:intergenic | 40.0% |
| ! | AACACTCTGTAAGGCACTTA+TGG | + | chr1_3:6669359-6669378 | None:intergenic | 40.0% |
| ATAAGTGCCTTACAGAGTGT+TGG | - | chr1_3:6669358-6669377 | Msa0100140:intron | 40.0% | |
| ! | ATCCCAGTTCTCTTCTCTTT+TGG | - | chr1_3:6669955-6669974 | Msa0100140:intron | 40.0% |
| ATCCACAGTTCCAATTGCAA+AGG | + | chr1_3:6670120-6670139 | None:intergenic | 40.0% | |
| ATGCTAAAGTGGAGCTTCTT+GGG | - | chr1_3:6670265-6670284 | Msa0100140:intron | 40.0% | |
| GGTATTCATCGCCCTTAATT+TGG | - | chr1_3:6670296-6670315 | Msa0100140:intron | 40.0% | |
| GTAACATGCCTCCCAAATTA+AGG | + | chr1_3:6670311-6670330 | None:intergenic | 40.0% | |
| ! | AATTTGGGAGGCATGTTACT+AGG | - | chr1_3:6670312-6670331 | Msa0100140:intron | 40.0% |
| CATGTTACTAGGTGTTTGGA+AGG | - | chr1_3:6670323-6670342 | Msa0100140:intron | 40.0% | |
| AGGCTGATAAATTCACTGCT+AGG | + | chr1_3:6670480-6670499 | None:intergenic | 40.0% | |
| GAGGCAGTAACATGAATAAC+AGG | + | chr1_3:6670688-6670707 | None:intergenic | 40.0% | |
| AATGAATTGAGCTGCAGAAG+AGG | + | chr1_3:6670707-6670726 | None:intergenic | 40.0% | |
| TCTTCTGCAGCTCAATTCAT+TGG | - | chr1_3:6670706-6670725 | Msa0100140:intron | 40.0% | |
| CTTCTGCAGCTCAATTCATT+GGG | - | chr1_3:6670707-6670726 | Msa0100140:intron | 40.0% | |
| AAAGAAAATCCAACCTGAGC+AGG | + | chr1_3:6670776-6670795 | None:intergenic | 40.0% | |
| AAGCATGTAATCATTGCCTC+TGG | + | chr1_3:6671029-6671048 | None:intergenic | 40.0% | |
| CAGCTCATGGAAATCACAAA+AGG | + | chr1_3:6671381-6671400 | None:intergenic | 40.0% | |
| ! | CTTTTTGTATCTTCAGGAGG+TGG | - | chr1_3:6671442-6671461 | Msa0100140:intron | 40.0% |
| ! | CTTAAGAACTGGAGCATCAA+CGG | + | chr1_3:6671493-6671512 | None:intergenic | 40.0% |
| ! | TCTTTGGTGACTGCAAGTAT+TGG | + | chr1_3:6671626-6671645 | None:intergenic | 40.0% |
| CAGTCACCAAAGATTAGACA+TGG | - | chr1_3:6671633-6671652 | Msa0100140:intron | 40.0% | |
| CATACTAGAAATGTTAGGGG+AGG | - | chr1_3:6671792-6671811 | Msa0100140:CDS | 40.0% | |
| ATTCACAATGGGAAGGTTAC+AGG | + | chr1_3:6671901-6671920 | None:intergenic | 40.0% | |
| TAACCTTCCCATTGTGAATC+AGG | - | chr1_3:6671902-6671921 | Msa0100140:five_prime_UTR | 40.0% | |
| ATACCTGATTCACAATGGGA+AGG | + | chr1_3:6671908-6671927 | None:intergenic | 40.0% | |
| ! | GGATAAAGGAAAGGGTGTGA+TGG | - | chr1_3:6668621-6668640 | Msa0100140:three_prime_UTR | 45.0% |
| GGTAGAATCGTCTTGATCGA+GGG | + | chr1_3:6668734-6668753 | None:intergenic | 45.0% | |
| CTCAACTCATAGATGCCGAA+CGG | - | chr1_3:6669073-6669092 | Msa0100140:intron | 45.0% | |
| TCAACTCATAGATGCCGAAC+GGG | - | chr1_3:6669074-6669093 | Msa0100140:intron | 45.0% | |
| ATCGGTCAATCATTCCCGTT+CGG | + | chr1_3:6669091-6669110 | None:intergenic | 45.0% | |
| GATGGGGTTTATGATGTGGA+TGG | - | chr1_3:6669276-6669295 | Msa0100140:intron | 45.0% | |
| GTATCACCTTCTCAGCTCTT+TGG | - | chr1_3:6669329-6669348 | Msa0100140:intron | 45.0% | |
| CTAGGTGTGTGAGTTTCAAG+TGG | + | chr1_3:6669457-6669476 | None:intergenic | 45.0% | |
| CACTTGAAACTCACACACCT+AGG | - | chr1_3:6669455-6669474 | Msa0100140:intron | 45.0% | |
| ATCTTCACCTGAGATCTCCT+AGG | + | chr1_3:6669475-6669494 | None:intergenic | 45.0% | |
| GACCTTTGCAATTGGAACTG+TGG | - | chr1_3:6670115-6670134 | Msa0100140:intron | 45.0% | |
| GATGCTAAAGTGGAGCTTCT+TGG | - | chr1_3:6670264-6670283 | Msa0100140:intron | 45.0% | |
| AGGGCGATGAATACCAACTT+AGG | + | chr1_3:6670291-6670310 | None:intergenic | 45.0% | |
| ! | TTCATCGCCCTTAATTTGGG+AGG | - | chr1_3:6670300-6670319 | Msa0100140:intron | 45.0% |
| GAGGCATGTTACTAGGTGTT+TGG | - | chr1_3:6670319-6670338 | Msa0100140:intron | 45.0% | |
| GCAACAATATCTGTAGACCC+AGG | - | chr1_3:6670989-6671008 | Msa0100140:intron | 45.0% | |
| ! | AAGGGTGTGATGGGATCTTC+TGG | - | chr1_3:6668631-6668650 | Msa0100140:three_prime_UTR | 50.0% |
| TGGGATCTTCTGGACGAAGA+TGG | - | chr1_3:6668641-6668660 | Msa0100140:three_prime_UTR | 50.0% | |
| GGGATCTTCTGGACGAAGAT+GGG | - | chr1_3:6668642-6668661 | Msa0100140:three_prime_UTR | 50.0% | |
| CGCGATATTATCGATCCTCC+CGG | - | chr1_3:6668694-6668713 | Msa0100140:three_prime_UTR | 50.0% | |
| GGGTAGAATCGTCTTGATCG+AGG | + | chr1_3:6668735-6668754 | None:intergenic | 50.0% | |
| GAAAGCTTGGGAAGTTGCAC+AGG | - | chr1_3:6669231-6669250 | Msa0100140:intron | 50.0% | |
| GGGTTTATGATGTGGATGGC+TGG | - | chr1_3:6669280-6669299 | Msa0100140:intron | 50.0% | |
| TCACACACCTAGGAGATCTC+AGG | - | chr1_3:6669465-6669484 | Msa0100140:intron | 50.0% | |
| TTCCTACCCACACATCAGAC+TGG | - | chr1_3:6670735-6670754 | Msa0100140:intron | 50.0% | |
| TCCTACCCACACATCAGACT+GGG | - | chr1_3:6670736-6670755 | Msa0100140:intron | 50.0% | |
| TGACACCCAGTCTGATGTGT+GGG | + | chr1_3:6670744-6670763 | None:intergenic | 50.0% | |
| ATGACACCCAGTCTGATGTG+TGG | + | chr1_3:6670745-6670764 | None:intergenic | 50.0% | |
| GGGTTGCCAAAGAGCTGAGA+AGG | + | chr1_3:6669338-6669357 | None:intergenic | 55.0% | |
| GGAGCTTCTTGGGCCTAAGT+TGG | - | chr1_3:6670275-6670294 | Msa0100140:intron | 55.0% | |
| ACCCAGTCTGATGTGTGGGT+AGG | + | chr1_3:6670740-6670759 | None:intergenic | 55.0% | |
| GTCATCCTTAGCACCTGCTC+AGG | - | chr1_3:6670760-6670779 | Msa0100140:intron | 55.0% | |
| TCCTTAGCACCTGCTCAGGT+TGG | - | chr1_3:6670764-6670783 | Msa0100140:intron | 55.0% | |
| TCCAACCTGAGCAGGTGCTA+AGG | + | chr1_3:6670768-6670787 | None:intergenic | 55.0% | |
| TCCATGAGCTGCAACACCCT+TGG | - | chr1_3:6671390-6671409 | Msa0100140:intron | 55.0% | |
| !! | ACCAAGGGTGTTGCAGCTCA+TGG | + | chr1_3:6671394-6671413 | None:intergenic | 55.0% |
| ! | CTTCAGGAGGTGGAGTACTC+AGG | - | chr1_3:6671452-6671471 | Msa0100140:intron | 55.0% |
| ! | AGGAGGTGGAGTACTCAGGT+GGG | - | chr1_3:6671456-6671475 | Msa0100140:intron | 55.0% |
| ! | AGGGAAGCGCGTGAGAAACC+GGG | + | chr1_3:6668715-6668734 | None:intergenic | 60.0% |
| ! | GAGGGAAGCGCGTGAGAAAC+CGG | + | chr1_3:6668716-6668735 | None:intergenic | 60.0% |
| ! | CAGGAGGTGGAGTACTCAGG+TGG | - | chr1_3:6671455-6671474 | Msa0100140:intron | 60.0% |
| ! | GGAGGTGGAGTACTCAGGTG+GGG | - | chr1_3:6671457-6671476 | Msa0100140:intron | 60.0% |
| ! | GAGGTGGAGTACTCAGGTGG+GGG | - | chr1_3:6671458-6671477 | Msa0100140:intron | 60.0% |
| GAAGCGCGTGAGAAACCGGG+AGG | + | chr1_3:6668712-6668731 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 6668518 | 6671943 | 6668518 | ID=Msa0100140;Name=Msa0100140 |
| chr1_3 | mRNA | 6668518 | 6671943 | 6668518 | ID=Msa0100140-mRNA-1;Parent=Msa0100140;Name=Msa0100140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=101|0.75|0.8|1|1|1|5|447|159 |
| chr1_3 | exon | 6668518 | 6669003 | 6668518 | ID=Msa0100140-mRNA-1:exon:2513;Parent=Msa0100140-mRNA-1 |
| chr1_3 | exon | 6669680 | 6669745 | 6669680 | ID=Msa0100140-mRNA-1:exon:2512;Parent=Msa0100140-mRNA-1 |
| chr1_3 | exon | 6670117 | 6670214 | 6670117 | ID=Msa0100140-mRNA-1:exon:2511;Parent=Msa0100140-mRNA-1 |
| chr1_3 | exon | 6671133 | 6671229 | 6671133 | ID=Msa0100140-mRNA-1:exon:2510;Parent=Msa0100140-mRNA-1 |
| chr1_3 | exon | 6671663 | 6671943 | 6671663 | ID=Msa0100140-mRNA-1:exon:2509;Parent=Msa0100140-mRNA-1 |
| chr1_3 | five_prime_UTR | 6671843 | 6671943 | 6671843 | ID=Msa0100140-mRNA-1:five_prime_utr;Parent=Msa0100140-mRNA-1 |
| chr1_3 | CDS | 6671663 | 6671842 | 6671663 | ID=Msa0100140-mRNA-1:cds;Parent=Msa0100140-mRNA-1 |
| chr1_3 | CDS | 6671133 | 6671229 | 6671133 | ID=Msa0100140-mRNA-1:cds;Parent=Msa0100140-mRNA-1 |
| chr1_3 | CDS | 6670117 | 6670214 | 6670117 | ID=Msa0100140-mRNA-1:cds;Parent=Msa0100140-mRNA-1 |
| chr1_3 | CDS | 6669680 | 6669745 | 6669680 | ID=Msa0100140-mRNA-1:cds;Parent=Msa0100140-mRNA-1 |
| chr1_3 | CDS | 6668965 | 6669003 | 6668965 | ID=Msa0100140-mRNA-1:cds;Parent=Msa0100140-mRNA-1 |
| chr1_3 | three_prime_UTR | 6668518 | 6668964 | 6668518 | ID=Msa0100140-mRNA-1:three_prime_utr;Parent=Msa0100140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
