AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102570 MtrunA17_Chr2g0333721 71.111 135 11 1 79 185 189 323 4.05e-52 183
Msa0102570 MtrunA17_Chr2g0333721 77.500 80 18 0 222 301 490 569 3.26e-32 126
Msa0102570 MtrunA17_Chr4g0072131 63.924 158 28 2 79 207 194 351 7.35e-51 180
Msa0102570 MtrunA17_Chr4g0072131 66.250 80 27 0 222 301 495 574 5.98e-27 110
Msa0102570 MtrunA17_Chr3g0138931 62.264 159 31 2 78 207 190 348 3.15e-50 178
Msa0102570 MtrunA17_Chr3g0138931 70.000 80 24 0 222 301 492 571 2.56e-29 117
Msa0102570 MtrunA17_Chr2g0304941 67.910 134 15 1 80 185 193 326 8.05e-49 174
Msa0102570 MtrunA17_Chr2g0304941 70.000 80 24 0 222 301 493 572 6.87e-29 116
Msa0102570 MtrunA17_Chr4g0065481 61.783 157 31 2 80 207 193 349 1.05e-48 174
Msa0102570 MtrunA17_Chr4g0065481 68.750 80 25 0 222 301 493 572 4.39e-28 114
Msa0102570 MtrunA17_Chr6g0452721 60.759 158 33 2 79 207 193 350 7.67e-48 171
Msa0102570 MtrunA17_Chr6g0452721 66.250 80 27 0 222 301 494 573 7.52e-27 110
Msa0102570 MtrunA17_Chr1g0148031 60.759 158 33 2 79 207 191 348 9.60e-48 171
Msa0102570 MtrunA17_Chr1g0148031 70.000 80 24 0 222 301 492 571 4.56e-29 117
Msa0102570 MtrunA17_Chr2g0298031 59.494 158 35 2 79 207 196 353 5.52e-47 169
Msa0102570 MtrunA17_Chr2g0298031 67.500 80 26 0 222 301 498 577 6.43e-28 113
Msa0102570 MtrunA17_Chr1g0147981 60.494 162 34 3 84 215 213 374 8.29e-47 168
Msa0102570 MtrunA17_Chr1g0147981 66.250 80 27 0 222 301 509 588 5.85e-27 110
Msa0102570 MtrunA17_Chr4g0059961 65.185 135 19 1 79 185 195 329 1.05e-46 168
Msa0102570 MtrunA17_Chr4g0059961 70.000 80 24 0 222 301 496 575 5.17e-29 117
Msa0102570 MtrunA17_Chr8g0365021 62.092 153 29 2 84 207 266 418 1.41e-46 167
Msa0102570 MtrunA17_Chr8g0365021 63.750 80 29 0 222 301 562 641 2.59e-25 106
Msa0102570 MtrunA17_Chr6g0474141 51.111 180 52 6 2 167 61 218 3.07e-46 159
Msa0102570 MtrunA17_Chr8g0335291 64.179 134 20 1 80 185 200 333 2.15e-45 164
Msa0102570 MtrunA17_Chr8g0335291 61.250 80 30 1 222 301 500 578 5.19e-23 99.4
Msa0102570 MtrunA17_Chr7g0276551 67.500 80 25 1 222 301 258 336 1.07e-24 103
Msa0102570 MtrunA17_Chr7g0276551 89.286 56 6 0 130 185 36 91 3.93e-24 102
Msa0102570 MtrunA17_Chr7g0276541 72.340 47 13 0 83 129 214 260 3.21e-15 74.7
Msa0102570 MtrunA17_Chr8g0341321 88.235 34 4 0 205 238 128 161 9.92e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102570 AT2G18960.3 67.407 135 16 1 79 185 125 259 2.66e-49 176
Msa0102570 AT2G18960.3 68.750 80 25 0 222 301 426 505 6.21e-28 114
Msa0102570 AT2G18960.2 67.407 135 16 1 79 185 125 259 2.66e-49 176
Msa0102570 AT2G18960.2 68.750 80 25 0 222 301 426 505 6.21e-28 114
Msa0102570 AT4G30190.1 67.407 135 16 1 79 185 189 323 2.71e-49 176
Msa0102570 AT4G30190.1 71.250 80 23 0 222 301 490 569 1.37e-29 119
Msa0102570 AT2G18960.1 67.407 135 16 1 79 185 189 323 3.39e-49 175
Msa0102570 AT2G18960.1 68.750 80 25 0 222 301 490 569 6.85e-28 114
Msa0102570 AT4G30190.2 67.407 135 16 1 79 185 189 323 3.76e-49 175
Msa0102570 AT4G30190.2 69.512 82 25 0 222 303 490 571 1.13e-29 119
Msa0102570 AT1G80660.2 68.148 135 15 1 79 185 65 199 8.08e-49 174
Msa0102570 AT1G80660.2 71.250 80 23 0 222 301 366 445 6.05e-29 117
Msa0102570 AT1G80660.3 68.148 135 15 1 79 185 194 328 1.06e-48 174
Msa0102570 AT1G80660.3 71.250 80 23 0 222 301 495 574 8.79e-29 116
Msa0102570 AT1G80660.4 68.657 134 14 1 80 185 195 328 1.10e-48 174
Msa0102570 AT1G80660.4 71.250 80 23 0 222 301 495 574 9.13e-29 116
Msa0102570 AT1G80660.1 68.148 135 15 1 79 185 194 328 1.36e-48 174
Msa0102570 AT1G80660.1 71.250 80 23 0 222 301 495 574 8.62e-29 116
Msa0102570 AT5G57350.4 61.006 159 33 2 78 207 189 347 3.15e-48 172
Msa0102570 AT5G57350.4 68.750 80 25 0 222 301 491 570 7.46e-28 114
Msa0102570 AT5G57350.2 61.006 159 33 2 78 207 189 347 3.15e-48 172
Msa0102570 AT5G57350.2 68.750 80 25 0 222 301 491 570 7.46e-28 114
Msa0102570 AT5G57350.1 61.006 159 33 2 78 207 189 347 3.15e-48 172
Msa0102570 AT5G57350.1 68.750 80 25 0 222 301 491 570 7.46e-28 114
Msa0102570 AT2G07560.1 61.006 159 33 2 78 207 191 349 1.32e-47 171
Msa0102570 AT2G07560.1 66.250 80 26 1 222 301 493 571 1.08e-24 104
Msa0102570 AT3G42640.1 65.926 135 18 1 79 185 192 326 1.80e-47 171
Msa0102570 AT3G42640.1 65.000 80 28 0 222 301 493 572 1.28e-25 107
Msa0102570 AT2G24520.3 66.418 134 17 1 80 185 172 305 8.62e-47 168
Msa0102570 AT2G24520.3 68.750 80 25 0 222 301 472 551 5.80e-28 114
Msa0102570 AT2G24520.1 66.418 134 17 1 80 185 172 305 8.62e-47 168
Msa0102570 AT2G24520.1 68.750 80 25 0 222 301 472 551 5.80e-28 114
Msa0102570 AT2G24520.2 66.418 134 17 1 80 185 235 368 8.65e-47 169
Msa0102570 AT2G24520.2 68.750 80 25 0 222 301 535 614 5.64e-28 114
Msa0102570 AT5G62670.1 65.926 135 18 1 79 185 193 327 2.13e-46 167
Msa0102570 AT5G62670.1 68.750 80 25 0 222 301 494 573 4.08e-29 117
Msa0102570 AT3G60330.4 59.873 157 34 2 80 207 193 349 4.06e-46 167
Msa0102570 AT3G60330.4 60.000 80 29 1 222 301 493 569 6.78e-21 93.6
Msa0102570 AT3G60330.3 59.873 157 34 2 80 207 193 349 4.06e-46 167
Msa0102570 AT3G60330.3 60.000 80 29 1 222 301 493 569 6.78e-21 93.6
Msa0102570 AT3G47950.1 65.926 135 18 1 79 185 197 331 4.29e-46 166
Msa0102570 AT3G47950.1 68.750 80 25 0 222 301 498 577 4.32e-28 114
Msa0102570 AT3G47950.2 65.926 135 18 1 79 185 197 331 4.29e-46 166
Msa0102570 AT3G47950.2 68.750 80 25 0 222 301 498 577 4.32e-28 114
Msa0102570 AT3G60330.2 59.873 157 34 2 80 207 193 349 4.47e-46 166
Msa0102570 AT3G60330.2 60.000 80 29 1 222 301 493 569 7.24e-21 93.6
Msa0102570 AT3G60330.1 59.873 157 34 2 80 207 193 349 4.47e-46 166
Msa0102570 AT3G60330.1 60.000 80 29 1 222 301 493 569 7.24e-21 93.6
Msa0102570 AT5G51970.1 82.278 79 14 0 2 80 63 141 7.93e-42 148
Msa0102570 AT5G51970.2 82.278 79 14 0 2 80 63 141 7.93e-42 148
Msa0102570 AT1G17260.1 58.519 135 28 1 79 185 197 331 6.86e-39 145
Msa0102570 AT1G17260.1 66.667 75 24 1 227 301 503 576 2.17e-21 95.1
Msa0102570 AT4G11730.1 43.204 206 79 7 34 207 149 348 1.60e-31 124
Msa0102570 AT2G24520.4 68.750 80 25 0 222 301 229 308 3.36e-28 114
Msa0102570 AT2G24520.4 87.500 56 7 0 130 185 7 62 1.80e-23 100
Msa0102570 AT5G57350.3 68.750 80 25 0 222 301 229 308 3.69e-28 114
Msa0102570 AT5G57350.3 73.418 79 20 1 130 207 7 85 1.19e-24 104

Find 133 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGAAATTTGCAGAAAA+AGG 0.178905 1_3:-9426028 Msa0102570:five_prime_UTR
TGTTGATTTCCATTAAAATT+TGG 0.183698 1_3:+9426345 None:intergenic
ACTACAGAACTCATGTTTAA+AGG 0.221139 1_3:-9420678 Msa0102570:three_prime_UTR
TTTGGGTCAATGCTGGATTT+TGG 0.222386 1_3:-9425994 Msa0102570:five_prime_UTR
TAACTCTTCATCAGTCATTT+TGG 0.241437 1_3:+9422002 None:intergenic
TTTGCTACTCCACCAGTTCA+TGG 0.280224 1_3:-9424763 Msa0102570:CDS
TAAAATTTGGCTAAGTTTGA+TGG 0.282820 1_3:+9426358 None:intergenic
GAGAAGGCTGATGGATTTAT+TGG 0.289309 1_3:-9421131 Msa0102570:CDS
GTTAAGGAACCAATGGTTAT+TGG 0.303921 1_3:-9424937 Msa0102570:CDS
ATAGTTCTTGATGCCTCATT+TGG 0.308689 1_3:+9420588 None:intergenic
CTTTGGTAAGGCTGCTCATT+TGG 0.311734 1_3:-9422869 Msa0102570:CDS
ACTGGTGTGCACATCTTCTT+TGG 0.327169 1_3:-9422886 Msa0102570:CDS
ATATTAACTGAAACCATTAA+AGG 0.329851 1_3:+9420555 None:intergenic
CTAGGGTTTGGTTGTTCTGC+TGG 0.345242 1_3:-9426107 Msa0102570:five_prime_UTR
ATGAATAGATGAGGGAAATA+TGG 0.357324 1_3:-9420759 Msa0102570:exon
TCATGGCTCACTCGCTAATC+AGG 0.358134 1_3:-9424746 Msa0102570:intron
TTTGGCTAAGTTTGATGGAT+TGG 0.358397 1_3:+9426363 None:intergenic
CTACAGAACTCATGTTTAAA+GGG 0.363715 1_3:-9420677 Msa0102570:three_prime_UTR
GTCTGTATTGGCAAGGAAAC+TGG 0.371690 1_3:-9421254 Msa0102570:CDS
GTCGACAACACTAACCAAAT+TGG 0.375277 1_3:-9422847 Msa0102570:CDS
TTGGCTAAGTTTGATGGATT+GGG 0.393848 1_3:+9426364 None:intergenic
CGTTGTCATAATTGCAGACT+TGG 0.394407 1_3:-9424817 Msa0102570:CDS
AAAAGGATTACTGAAAGTTT+GGG 0.396958 1_3:-9426011 Msa0102570:five_prime_UTR
AAAACTGTTGGCATTGCAAT+AGG 0.398141 1_3:+9422418 None:intergenic
AATCTATTGGTGCTTCTGAT+TGG 0.400461 1_3:-9422448 Msa0102570:CDS
CTATTCAGTGCCGCAAGTAT+AGG 0.401900 1_3:-9422483 Msa0102570:intron
AATGATAGCCATTGAGGAAA+TGG 0.403111 1_3:-9422335 Msa0102570:CDS
TTGTCAGTTACAATGGCTAT+TGG 0.408229 1_3:-9422397 Msa0102570:CDS
TGATGGATTGGGGTGGAAGA+AGG 0.416849 1_3:+9426375 None:intergenic
ATTGCCAAACCAAACCACTA+TGG 0.418671 1_3:+9426054 None:intergenic
AATATTTATCCATAGTGGTT+TGG 0.421551 1_3:-9426063 Msa0102570:five_prime_UTR
GTAAATGTTAAGATGATTAC+CGG 0.424092 1_3:-9421284 Msa0102570:CDS
CTGAAAGTTTGGGTCAATGC+TGG 0.428752 1_3:-9426001 Msa0102570:five_prime_UTR
TTATCCATAGTGGTTTGGTT+TGG 0.431491 1_3:-9426058 Msa0102570:five_prime_UTR
GACCGTGTGACAATCGAGCC+TGG 0.434046 1_3:-9424853 Msa0102570:CDS
GGCGTTGAGCAGTAGGATAC+TGG 0.437103 1_3:-9420738 Msa0102570:three_prime_UTR
GAACAATTTAATCCTTATGC+AGG 0.443965 1_3:-9426297 Msa0102570:five_prime_UTR
CATTGCAGCCATTTCCTCAA+TGG 0.448211 1_3:+9422327 None:intergenic
GGCTGCAATGGTGGCTGCAA+TGG 0.454503 1_3:-9422314 Msa0102570:CDS
TAAGATGATTACCGGTGATC+AGG 0.459782 1_3:-9421276 Msa0102570:CDS
AAGCTTCAAATCTTGATCCT+TGG 0.470419 1_3:-9426319 Msa0102570:five_prime_UTR
GGAAGAATGAGGCTAGGGTT+TGG 0.476338 1_3:-9426119 Msa0102570:five_prime_UTR
GGATTTATTGGTGTCTTCCC+TGG 0.480056 1_3:-9421119 Msa0102570:intron
GTGTGAATATTTATCCATAG+TGG 0.480971 1_3:-9426068 Msa0102570:five_prime_UTR
GAAATATGGCGTTGAGCAGT+AGG 0.481183 1_3:-9420745 Msa0102570:three_prime_UTR
CTATTGGTGCTTCTGATTGG+AGG 0.482388 1_3:-9422445 Msa0102570:CDS
ACCGGTGATCAGGTCTGTAT+TGG 0.484326 1_3:-9421266 Msa0102570:CDS
CCAAATTGGTCATTTCCAAA+AGG 0.485446 1_3:-9422833 Msa0102570:intron
AAGGAAACTGGTCGCAGGCT+CGG 0.486276 1_3:-9421242 Msa0102570:CDS
AACTGGTCGCAGGCTCGGCA+TGG 0.489073 1_3:-9421237 Msa0102570:CDS
TGATTCTGCATGTTAAAGTC+TGG 0.492401 1_3:+9421965 None:intergenic
TGGCTAAGTTTGATGGATTG+GGG 0.493585 1_3:+9426365 None:intergenic
AAATGACTGATGAAGAGTTA+AGG 0.494086 1_3:-9421999 Msa0102570:CDS
TCGAGCCTGGGATTAGTTGT+TGG 0.495453 1_3:-9424840 Msa0102570:CDS
TGGATTGGGGTGGAAGAAGG+AGG 0.497791 1_3:+9426378 None:intergenic
GAGGCGATTGTAATTGCTAC+TGG 0.499071 1_3:-9422904 Msa0102570:CDS
AACAACAGTTATACTAAGGT+TGG 0.501460 1_3:+9422256 None:intergenic
GAACTTATTGAGAAGGCTGA+TGG 0.506893 1_3:-9421140 Msa0102570:CDS
TGTGCACATCTTCTTTGGTA+AGG 0.510568 1_3:-9422881 Msa0102570:CDS
TATCCATCATCCTCCCTCCT+TGG 0.517757 1_3:-9421203 Msa0102570:CDS
ACTGGTCGCAGGCTCGGCAT+GGG 0.525330 1_3:-9421236 Msa0102570:CDS
ACCGTGTGACAATCGAGCCT+GGG 0.525638 1_3:-9424852 Msa0102570:CDS
GGATTGGGGTGGAAGAAGGA+GGG 0.526107 1_3:+9426379 None:intergenic
GAGTGGAATTGACAATCTAT+TGG 0.533730 1_3:-9422461 Msa0102570:CDS
AAAGAGAATGATAGCCATTG+AGG 0.536593 1_3:-9422341 Msa0102570:CDS
GTTCTATAGAGTGCATGAGC+AGG 0.538940 1_3:+9420708 None:intergenic
TATACTAAGGTTGGATCCTG+TGG 0.540104 1_3:+9422265 None:intergenic
GCGTGAGATGTTTACAGAGA+AGG 0.540387 1_3:+9426405 None:intergenic
ATCCTTGTGCTTGCCAAGGA+GGG 0.542106 1_3:+9421190 None:intergenic
TGGTTGTTCTGCTGGAAGAG+TGG 0.542119 1_3:-9426099 Msa0102570:five_prime_UTR
GTTATTGGTCATGAGTGTGC+TGG 0.542398 1_3:-9424922 Msa0102570:CDS
TGGTGGTCAGATAAAGACTT+TGG 0.543771 1_3:-9424884 Msa0102570:CDS
GGTTGTTCTGCTGGAAGAGT+GGG 0.543940 1_3:-9426098 Msa0102570:five_prime_UTR
AACAAGGAAGAATGAGGCTA+GGG 0.544925 1_3:-9426124 Msa0102570:five_prime_UTR
GTGGTTGAGTTCAGCTAGGA+GGG 0.546134 1_3:+9426245 None:intergenic
TTCTCAATAAGTTCATCGAC+CGG 0.549212 1_3:+9421149 None:intergenic
CTCCCTCCTTGGCAAGCACA+AGG 0.551626 1_3:-9421192 Msa0102570:CDS
AAACAAGGAAGAATGAGGCT+AGG 0.555234 1_3:-9426125 Msa0102570:five_prime_UTR
CAGATAAAGACTTTGGTGAC+GGG 0.555447 1_3:-9424877 Msa0102570:CDS
CCGAAGTAGACTTCATGACC+AGG 0.557538 1_3:+9422952 None:intergenic
TAATCTGATTCAGAAGGCTA+TGG 0.559268 1_3:-9425910 Msa0102570:intron
GTAAGAAACAAGGAAGAATG+AGG 0.565874 1_3:-9426130 Msa0102570:five_prime_UTR
GAAACTGTTATGAATAGATG+AGG 0.566329 1_3:-9420768 Msa0102570:exon
ATTCAAAACTTGTGAGCTTG+TGG 0.566883 1_3:+9426226 None:intergenic
GCTTGTGGTTGAGTTCAGCT+AGG 0.568220 1_3:+9426241 None:intergenic
CAATTCCACTCCTATACTTG+CGG 0.571367 1_3:+9422473 None:intergenic
CACTCATGACCAATAACCAT+TGG 0.574816 1_3:+9424928 None:intergenic
GGTCGATGAACTTATTGAGA+AGG 0.577418 1_3:-9421147 Msa0102570:CDS
CATCCTTGTGCTTGCCAAGG+AGG 0.577904 1_3:+9421189 None:intergenic
TGCATCGATTGCTTCACCTC+CGG 0.579732 1_3:-9421168 Msa0102570:CDS
TTAGCGAGTGAGCCATGAAC+TGG 0.580769 1_3:+9424751 None:intergenic
CAATGGCTATTGGTTCACAT+AGG 0.583958 1_3:-9422387 Msa0102570:CDS
CTACTCTATAAACAATCTGA+TGG 0.585680 1_3:+9426198 None:intergenic
GCTGGGATCATTGAAGAAGT+TGG 0.586508 1_3:-9424904 Msa0102570:CDS
ATAAGGATTAAATTGTTCCA+AGG 0.587103 1_3:+9426302 None:intergenic
ATTGTAACTGACAAAACTGT+TGG 0.588142 1_3:+9422406 None:intergenic
TTGTCAGACTCTGAATCCAC+AGG 0.589255 1_3:-9422281 Msa0102570:CDS
AGAGTCTGATTTCTAGAGAG+AGG 0.590019 1_3:+9426431 None:intergenic
TTATTGGTCATGAGTGTGCT+GGG 0.592332 1_3:-9424921 Msa0102570:CDS
CCTGGTCATGAAGTCTACTT+CGG 0.592347 1_3:-9422952 Msa0102570:CDS
TAAGCTTAATCTGATTCAGA+AGG 0.592506 1_3:-9425916 Msa0102570:five_prime_UTR
ATGCATCCTTGTGCTTGCCA+AGG 0.596619 1_3:+9421186 None:intergenic
GTTCAGCTAGGAGGGAAAAG+AGG 0.597652 1_3:+9426253 None:intergenic
CATTGAGGAAATGGCTGCAA+TGG 0.598365 1_3:-9422326 Msa0102570:CDS
TGTGGTTGAGTTCAGCTAGG+AGG 0.605438 1_3:+9426244 None:intergenic
TGGGGTGGAAGAAGGAGGGA+AGG 0.605825 1_3:+9426383 None:intergenic
GCCAATACAGACCTGATCAC+CGG 0.605897 1_3:+9421265 None:intergenic
GCGAGTGAGCCATGAACTGG+TGG 0.607485 1_3:+9424754 None:intergenic
TGAGGAAATGGCTGCAATGG+TGG 0.607777 1_3:-9422323 Msa0102570:CDS
TTGGCAAGGAAACTGGTCGC+AGG 0.608254 1_3:-9421247 Msa0102570:CDS
ATGATTAGAAGTAAGAAACA+AGG 0.611284 1_3:-9426140 Msa0102570:five_prime_UTR
CTTGTGCTTGCCAAGGAGGG+AGG 0.613362 1_3:+9421193 None:intergenic
AAACTGTTATGAATAGATGA+GGG 0.613750 1_3:-9420767 Msa0102570:exon
CTAAGTTTGATGGATTGGGG+TGG 0.613755 1_3:+9426368 None:intergenic
TCAGATAAAGACTTTGGTGA+CGG 0.618240 1_3:-9424878 Msa0102570:CDS
TGGAAAATACTAAGCAGAGG+AGG 0.621630 1_3:+9420608 None:intergenic
CAACGCCAACAACTAATCCC+AGG 0.623296 1_3:+9424835 None:intergenic
TTGCCAAGGAGGGAGGATGA+TGG 0.623656 1_3:+9421200 None:intergenic
TGATCAGGTCTGTATTGGCA+AGG 0.624183 1_3:-9421261 Msa0102570:CDS
AGAAGGCAGAAACTATGAGC+TGG 0.628060 1_3:-9425942 Msa0102570:five_prime_UTR
TAACATGCAGAATCAACAAG+AGG 0.635487 1_3:-9421957 Msa0102570:intron
GAATTGTTTACCAAGAACCC+TGG 0.635568 1_3:-9422970 Msa0102570:intron
CAGTGCCGCAAGTATAGGAG+TGG 0.639208 1_3:-9422478 Msa0102570:CDS
TCACATAGGTTGTCTCAGCA+AGG 0.643329 1_3:-9422373 Msa0102570:CDS
TTCGGCTCTACTGTAAAGCA+AGG 0.649355 1_3:-9422934 Msa0102570:CDS
GTTCTGCTGGAAGAGTGGGT+AGG 0.649658 1_3:-9426094 Msa0102570:five_prime_UTR
TCCCAGGCTCGATTGTCACA+CGG 0.651363 1_3:+9424851 None:intergenic
GCTAGGAGGGAAAAGAGGAA+AGG 0.662694 1_3:+9426258 None:intergenic
ATTTGGAAAATACTAAGCAG+AGG 0.665581 1_3:+9420605 None:intergenic
TGTAAAGCAAGGAGAACTCG+AGG 0.676421 1_3:-9422923 Msa0102570:CDS
GGGATCATTGAAGAAGTTGG+TGG 0.686510 1_3:-9424901 Msa0102570:CDS
TCAATAAGTTCATCGACCGG+AGG 0.693726 1_3:+9421152 None:intergenic
CGAAGTAGACTTCATGACCA+GGG 0.696865 1_3:+9422953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTCAATTATGTTATGA+TGG - chr1_3:9421424-9421443 Msa0102570:intron 15.0%
!! AATGTTCATGTTAAAATATT+CGG - chr1_3:9421505-9421524 Msa0102570:intron 15.0%
!!! TATTTTGTTTTCATGATTTT+AGG - chr1_3:9421726-9421745 Msa0102570:intron 15.0%
!!! ATTTTGTTTTCATGATTTTA+GGG - chr1_3:9421727-9421746 Msa0102570:intron 15.0%
!!! TCTTTTTGATGTTTAATTAA+AGG - chr1_3:9423850-9423869 Msa0102570:intron 15.0%
!! TTTGTAAAATTGACTAAAAT+TGG - chr1_3:9423922-9423941 Msa0102570:intron 15.0%
!! TTGAAATAATATTACATACA+GGG + chr1_3:9425612-9425631 None:intergenic 15.0%
!! ATTGAAATAATATTACATAC+AGG + chr1_3:9425613-9425632 None:intergenic 15.0%
!!! ATCAAGATTTTATGATTAAA+TGG - chr1_3:9426442-9426461 Msa0102570:five_prime_UTR 15.0%
!!! TGTTGATTTCCATTAAAATT+TGG + chr1_3:9420581-9420600 None:intergenic 20.0%
!!! GGTATAATTTTAAGAAATGT+TGG - chr1_3:9421094-9421113 Msa0102570:intron 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG + chr1_3:9421198-9421217 None:intergenic 20.0%
!! AATTTATGTCTTCTTTCTAA+TGG + chr1_3:9421379-9421398 None:intergenic 20.0%
!!! GACATAAATTAACTTGAAAT+AGG - chr1_3:9421389-9421408 Msa0102570:intron 20.0%
!!! TAATGATTTTTTTCTCCAAA+TGG - chr1_3:9421826-9421845 Msa0102570:intron 20.0%
!!! AACTATACTTTGAGAATTTA+TGG + chr1_3:9422217-9422236 None:intergenic 20.0%
!! AAAAATCAATGCATTCATTT+GGG + chr1_3:9422506-9422525 None:intergenic 20.0%
!! AAAAAATCAATGCATTCATT+TGG + chr1_3:9422507-9422526 None:intergenic 20.0%
!!! TGTTTCTATATGTTTTTTGT+TGG - chr1_3:9422549-9422568 Msa0102570:intron 20.0%
!! ACATTATTACTATGATACAA+TGG + chr1_3:9422700-9422719 None:intergenic 20.0%
!!! TATTTTTGTCTACTTTACAA+AGG + chr1_3:9422868-9422887 None:intergenic 20.0%
!!! TACTAACAAAACTGAATTTT+TGG - chr1_3:9423147-9423166 Msa0102570:intron 20.0%
!! TACAAATGATATAACTAAAC+AGG + chr1_3:9423275-9423294 None:intergenic 20.0%
!! GGTTAATGAATATTACAATT+TGG + chr1_3:9425139-9425158 None:intergenic 20.0%
!! ATTGTATGTATATATTACCA+GGG + chr1_3:9425824-9425843 None:intergenic 20.0%
!! AATTGTATGTATATATTACC+AGG + chr1_3:9425825-9425844 None:intergenic 20.0%
!! TTTGTATTATCAATTTACTC+TGG - chr1_3:9425843-9425862 Msa0102570:intron 20.0%
!! ATATTAACTGAAACCATTAA+AGG + chr1_3:9426371-9426390 None:intergenic 20.0%
! TAAAATTTGGCTAAGTTTGA+TGG + chr1_3:9420568-9420587 None:intergenic 25.0%
!! CAAACTTAGCCAAATTTTAA+TGG - chr1_3:9420569-9420588 Msa0102570:three_prime_UTR 25.0%
! ATAAGGATTAAATTGTTCCA+AGG + chr1_3:9420624-9420643 None:intergenic 25.0%
!!! AAGAATTTTAATCCTGCATA+AGG + chr1_3:9420641-9420660 None:intergenic 25.0%
! ATGATTAGAAGTAAGAAACA+AGG - chr1_3:9420783-9420802 Msa0102570:intron 25.0%
! AATATTTATCCATAGTGGTT+TGG - chr1_3:9420860-9420879 Msa0102570:intron 25.0%
! AACAAGAAATTTGCAGAAAA+AGG - chr1_3:9420895-9420914 Msa0102570:intron 25.0%
! AAAAAGGATTACTGAAAGTT+TGG - chr1_3:9420911-9420930 Msa0102570:intron 25.0%
! AAAAGGATTACTGAAAGTTT+GGG - chr1_3:9420912-9420931 Msa0102570:intron 25.0%
! TGAATTTGATTAGATAGAGA+AGG - chr1_3:9421054-9421073 Msa0102570:intron 25.0%
! GACAAAATTTAACACGAAAT+AGG - chr1_3:9421208-9421227 Msa0102570:CDS 25.0%
!! AATTAACTTGAAATAGGCTT+TGG - chr1_3:9421395-9421414 Msa0102570:intron 25.0%
! ATAAAAAATCTGCTCTATTG+TGG - chr1_3:9421478-9421497 Msa0102570:intron 25.0%
! ATCAAAATTGCAGATTATGT+AGG + chr1_3:9421855-9421874 None:intergenic 25.0%
!!! TAATCTGCAATTTTGATTCA+AGG - chr1_3:9421858-9421877 Msa0102570:intron 25.0%
!!! AATCTGCAATTTTGATTCAA+GGG - chr1_3:9421859-9421878 Msa0102570:intron 25.0%
! TATAGAACAAAGATAAATGC+AGG + chr1_3:9421891-9421910 None:intergenic 25.0%
!! ATGTGCAGATTTTATAGTTA+AGG - chr1_3:9421970-9421989 Msa0102570:CDS 25.0%
!! TTTTATAGTTAAGGAACCAA+TGG - chr1_3:9421979-9421998 Msa0102570:CDS 25.0%
! TAGCAAAAAACTTCATATCA+AGG + chr1_3:9422147-9422166 None:intergenic 25.0%
!! TAGATTTTTGTACTTCGAAT+TGG + chr1_3:9422251-9422270 None:intergenic 25.0%
! CGGTAGAACATAAAAAAATT+AGG - chr1_3:9422456-9422475 Msa0102570:CDS 25.0%
! AAAATCAATGCATTCATTTG+GGG + chr1_3:9422505-9422524 None:intergenic 25.0%
! AATTGCTCAAAGTATAATGT+GGG - chr1_3:9422586-9422605 Msa0102570:intron 25.0%
! GAAATGCATTTGATTGAATT+TGG - chr1_3:9422630-9422649 Msa0102570:intron 25.0%
! GTATGATCAATTTACTAACA+GGG + chr1_3:9422808-9422827 None:intergenic 25.0%
! TGTATGATCAATTTACTAAC+AGG + chr1_3:9422809-9422828 None:intergenic 25.0%
! TTTAGGAAAACTGTACAAAT+TGG - chr1_3:9422997-9423016 Msa0102570:intron 25.0%
!!! ACAAAACTGAATTTTTGGAT+TGG - chr1_3:9423152-9423171 Msa0102570:intron 25.0%
! GCTTAGTTACTAAACATAAA+AGG + chr1_3:9423386-9423405 None:intergenic 25.0%
! ATTGCATATTACTTACCATA+AGG - chr1_3:9423456-9423475 Msa0102570:intron 25.0%
! TTGCATATTACTTACCATAA+GGG - chr1_3:9423457-9423476 Msa0102570:intron 25.0%
! AACAATATGCATAATGAATC+TGG + chr1_3:9423558-9423577 None:intergenic 25.0%
! AATGTTAATTTCTTGTCAAG+AGG + chr1_3:9423620-9423639 None:intergenic 25.0%
! ACACTAAGTTACAGTATAAT+TGG - chr1_3:9423677-9423696 Msa0102570:intron 25.0%
! ACAAACACAAAAATAATACC+TGG + chr1_3:9423907-9423926 None:intergenic 25.0%
! GCTTAATATATCAAAAGAGT+TGG - chr1_3:9424231-9424250 Msa0102570:intron 25.0%
!!! AAAAAATCTTCTTTTTGGCA+AGG + chr1_3:9424707-9424726 None:intergenic 25.0%
! CTGTAGATGATTTAAATGTT+TGG - chr1_3:9424829-9424848 Msa0102570:CDS 25.0%
!! TGTTTGGAACAATATATCTA+AGG - chr1_3:9424845-9424864 Msa0102570:CDS 25.0%
!! ATGCAGAATTTTATTGTGTT+TGG - chr1_3:9424887-9424906 Msa0102570:CDS 25.0%
! TTGTACAAAAGTTGCTAAAA+AGG - chr1_3:9425028-9425047 Msa0102570:intron 25.0%
!! AATTTTCGTGAAATGACAAT+TGG + chr1_3:9425192-9425211 None:intergenic 25.0%
! TCATTTCACGAAAATTCAAT+AGG - chr1_3:9425196-9425215 Msa0102570:intron 25.0%
! ACGAAAATTCAATAGGTAAT+TGG - chr1_3:9425203-9425222 Msa0102570:intron 25.0%
! TCTTACTAACGACTTAAAAA+AGG + chr1_3:9425253-9425272 None:intergenic 25.0%
!! TCACATTTTTCATGTTATTG+TGG - chr1_3:9425288-9425307 Msa0102570:intron 25.0%
!! ATGAGTTCTTTTGAATTGTA+GGG - chr1_3:9425354-9425373 Msa0102570:intron 25.0%
! GTAAATGTTAAGATGATTAC+CGG - chr1_3:9425639-9425658 Msa0102570:intron 25.0%
! CAAAATAAACAACAGAAATG+AGG + chr1_3:9426041-9426060 None:intergenic 25.0%
!!! TTTATTTTGACTTGAATGTG+TGG - chr1_3:9426052-9426071 Msa0102570:five_prime_UTR 25.0%
! CAACAGAAAAAATCATGTAA+TGG + chr1_3:9426128-9426147 None:intergenic 25.0%
! AAACTGTTATGAATAGATGA+GGG - chr1_3:9426156-9426175 Msa0102570:five_prime_UTR 25.0%
!!! TATTTTGTTGGTTCCTTTAA+TGG - chr1_3:9426355-9426374 Msa0102570:five_prime_UTR 25.0%
GAACAATTTAATCCTTATGC+AGG - chr1_3:9420626-9420645 Msa0102570:three_prime_UTR 30.0%
CTACTCTATAAACAATCTGA+TGG + chr1_3:9420728-9420747 None:intergenic 30.0%
GTGTGAATATTTATCCATAG+TGG - chr1_3:9420855-9420874 Msa0102570:intron 30.0%
! AGAAATTGAAGTTTTGCAGA+AGG - chr1_3:9420964-9420983 Msa0102570:intron 30.0%
TAAGCTTAATCTGATTCAGA+AGG - chr1_3:9421007-9421026 Msa0102570:intron 30.0%
!! ATAGAGAAGGATTTGTTAGT+TGG - chr1_3:9421067-9421086 Msa0102570:intron 30.0%
!! AAGGATTTGTTAGTTGGTTA+TGG - chr1_3:9421073-9421092 Msa0102570:intron 30.0%
TTGAGTGAAAATTGAACCAT+TGG - chr1_3:9421179-9421198 Msa0102570:CDS 30.0%
!! AAAATCTGAAGTGTTGTTGT+TGG - chr1_3:9421301-9421320 Msa0102570:intron 30.0%
GTATAAGTCACATTTCAAAC+TGG + chr1_3:9421357-9421376 None:intergenic 30.0%
! AGAGTGTTTAGAATAAGTCA+TGG - chr1_3:9421657-9421676 Msa0102570:intron 30.0%
!!! TTTCGTTTTTTGTTGTTGGT+TGG - chr1_3:9421694-9421713 Msa0102570:intron 30.0%
AGATTATGTAGGAAACCATT+TGG + chr1_3:9421844-9421863 None:intergenic 30.0%
AATTTCAATGTTGCAAGTAG+TGG - chr1_3:9422279-9422298 Msa0102570:CDS 30.0%
!!! ATTTTTTTATGTTCTACCGC+AGG + chr1_3:9422455-9422474 None:intergenic 30.0%
AAATCAATGCATTCATTTGG+GGG + chr1_3:9422504-9422523 None:intergenic 30.0%
GAATTGCTCAAAGTATAATG+TGG - chr1_3:9422585-9422604 Msa0102570:intron 30.0%
GACAAAAATACCTACAGAAT+AGG - chr1_3:9422878-9422897 Msa0102570:CDS 30.0%
! TTTTCCTAAAGAACATGTAC+AGG + chr1_3:9422987-9423006 None:intergenic 30.0%
GAATGTTCGTTTAGTCAATT+CGG - chr1_3:9423079-9423098 Msa0102570:intron 30.0%
AAATTTAGTACATACCCAGT+TGG - chr1_3:9423651-9423670 Msa0102570:intron 30.0%
! CCATTTTATAACTGCATTCA+TGG + chr1_3:9423724-9423743 None:intergenic 30.0%
CCATGAATGCAGTTATAAAA+TGG - chr1_3:9423721-9423740 Msa0102570:intron 30.0%
TGCACATATTCCAAGTATAA+AGG + chr1_3:9423814-9423833 None:intergenic 30.0%
! AGTAAGAGTTAAGTACCTTT+TGG + chr1_3:9424108-9424127 None:intergenic 30.0%
ATGCTGATCACTACTAAAAA+AGG - chr1_3:9424169-9424188 Msa0102570:intron 30.0%
ATTGTAACTGACAAAACTGT+TGG + chr1_3:9424520-9424539 None:intergenic 30.0%
!! AACAGTTTTGTCAGTTACAA+TGG - chr1_3:9424519-9424538 Msa0102570:intron 30.0%
AACAACAGTTATACTAAGGT+TGG + chr1_3:9424670-9424689 None:intergenic 30.0%
AACCTTAGTATAACTGTTGT+TGG - chr1_3:9424669-9424688 Msa0102570:intron 30.0%
! GCTGGAAAAAATCTTCTTTT+TGG + chr1_3:9424712-9424731 None:intergenic 30.0%
! TTGCTCTTTTCTATGAAGAT+TGG - chr1_3:9424737-9424756 Msa0102570:intron 30.0%
! TAACTCTTCATCAGTCATTT+TGG + chr1_3:9424924-9424943 None:intergenic 30.0%
AAATGACTGATGAAGAGTTA+AGG - chr1_3:9424924-9424943 Msa0102570:CDS 30.0%
GAACTATTCATGATAGTAGA+GGG - chr1_3:9425060-9425079 Msa0102570:intron 30.0%
AAATGACAATTGGCAAATAG+GGG + chr1_3:9425182-9425201 None:intergenic 30.0%
GAAATGACAATTGGCAAATA+GGG + chr1_3:9425183-9425202 None:intergenic 30.0%
TGAAATGACAATTGGCAAAT+AGG + chr1_3:9425184-9425203 None:intergenic 30.0%
AAAAGAACTCATCAGTATAG+GGG + chr1_3:9425346-9425365 None:intergenic 30.0%
CAAAAGAACTCATCAGTATA+GGG + chr1_3:9425347-9425366 None:intergenic 30.0%
TCAAAAGAACTCATCAGTAT+AGG + chr1_3:9425348-9425367 None:intergenic 30.0%
! GATGAGTTCTTTTGAATTGT+AGG - chr1_3:9425353-9425372 Msa0102570:intron 30.0%
CAGAAAAGAAGAAATGTAGT+TGG - chr1_3:9425869-9425888 Msa0102570:intron 30.0%
! ATATCTTTGATGGCATCATT+CGG - chr1_3:9426078-9426097 Msa0102570:five_prime_UTR 30.0%
AAAAATCATGTAATGGTCTC+AGG + chr1_3:9426121-9426140 None:intergenic 30.0%
GAAACTGTTATGAATAGATG+AGG - chr1_3:9426155-9426174 Msa0102570:five_prime_UTR 30.0%
ATGAATAGATGAGGGAAATA+TGG - chr1_3:9426164-9426183 Msa0102570:five_prime_UTR 30.0%
ACTACAGAACTCATGTTTAA+AGG - chr1_3:9426245-9426264 Msa0102570:five_prime_UTR 30.0%
CTACAGAACTCATGTTTAAA+GGG - chr1_3:9426246-9426265 Msa0102570:five_prime_UTR 30.0%
ATTTGGAAAATACTAAGCAG+AGG + chr1_3:9426321-9426340 None:intergenic 30.0%
! TGCTTAGTATTTTCCAAATG+AGG - chr1_3:9426322-9426341 Msa0102570:five_prime_UTR 30.0%
!! TTGGCTAAGTTTGATGGATT+GGG + chr1_3:9420562-9420581 None:intergenic 35.0%
! TTTGGCTAAGTTTGATGGAT+TGG + chr1_3:9420563-9420582 None:intergenic 35.0%
AAGCTTCAAATCTTGATCCT+TGG - chr1_3:9420604-9420623 Msa0102570:three_prime_UTR 35.0%
ATTCAAAACTTGTGAGCTTG+TGG + chr1_3:9420700-9420719 None:intergenic 35.0%
GTAAGAAACAAGGAAGAATG+AGG - chr1_3:9420793-9420812 Msa0102570:intron 35.0%
!! TTATCCATAGTGGTTTGGTT+TGG - chr1_3:9420865-9420884 Msa0102570:intron 35.0%
TAATCTGATTCAGAAGGCTA+TGG - chr1_3:9421013-9421032 Msa0102570:intron 35.0%
TAGACCTACTGTCAGAAAAA+CGG - chr1_3:9421129-9421148 Msa0102570:CDS 35.0%
ATTTAACACGAAATAGGCTC+TGG - chr1_3:9421214-9421233 Msa0102570:CDS 35.0%
TGAGTTACAAGTTTCAGTTG+TGG - chr1_3:9421454-9421473 Msa0102570:intron 35.0%
AAAATCTGCTCTATTGTGGT+TGG - chr1_3:9421482-9421501 Msa0102570:intron 35.0%
AGTCCTTGTAATTTCAATCC+AGG + chr1_3:9421538-9421557 None:intergenic 35.0%
!!! GCTCTTTCGTTTTTTGTTGT+TGG - chr1_3:9421690-9421709 Msa0102570:intron 35.0%
GTTAAGGAACCAATGGTTAT+TGG - chr1_3:9421986-9422005 Msa0102570:CDS 35.0%
TCAGATAAAGACTTTGGTGA+CGG - chr1_3:9422045-9422064 Msa0102570:intron 35.0%
! AAAGTGCTAGAACACAACTA+CGG + chr1_3:9422342-9422361 None:intergenic 35.0%
GCATTTGATTGAATTTGGCA+AGG - chr1_3:9422635-9422654 Msa0102570:intron 35.0%
AAATTCTGCAATTTGCAGCT+TGG - chr1_3:9422779-9422798 Msa0102570:intron 35.0%
TGTTCCTGTACATGTTCTTT+AGG - chr1_3:9422980-9422999 Msa0102570:intron 35.0%
TTGACTAAACGAACATTCCT+TGG + chr1_3:9423077-9423096 None:intergenic 35.0%
TGCTAATACTCTAACACAGA+TGG - chr1_3:9423213-9423232 Msa0102570:intron 35.0%
!!! CTCTAACACAGATGGTTTTT+TGG - chr1_3:9423221-9423240 Msa0102570:intron 35.0%
TGTTTAGTAACTAAGCTAGC+TGG - chr1_3:9423301-9423320 Msa0102570:intron 35.0%
TGTTTAGTAACTAAGCTAGC+TGG - chr1_3:9423301-9423320 Msa0102570:intron 35.0%
CTAAGCTAGCTGGTAATTAA+TGG - chr1_3:9423311-9423330 Msa0102570:intron 35.0%
TATTACTTACCATAAGGGAG+AGG - chr1_3:9423462-9423481 Msa0102570:intron 35.0%
! ACTTTTCTAATGGCATCTTC+AGG - chr1_3:9423486-9423505 Msa0102570:intron 35.0%
CTTAGTAGAAGCTTTCTGAA+AGG + chr1_3:9423758-9423777 None:intergenic 35.0%
CTTTCAGAAAGCTTCTACTA+AGG - chr1_3:9423756-9423775 Msa0102570:intron 35.0%
!! CCTTTTGGAAATGACCAATT+TGG + chr1_3:9424093-9424112 None:intergenic 35.0%
CCAAATTGGTCATTTCCAAA+AGG - chr1_3:9424090-9424109 Msa0102570:intron 35.0%
! GAACTGCAATTTTATGTCCA+TGG - chr1_3:9424331-9424350 Msa0102570:intron 35.0%
TCAACACATGATCATAACCA+TGG + chr1_3:9424351-9424370 None:intergenic 35.0%
TGCATTTGCTCAATTGCTTT+GGG - chr1_3:9424388-9424407 Msa0102570:intron 35.0%
GAGTGGAATTGACAATCTAT+TGG - chr1_3:9424462-9424481 Msa0102570:intron 35.0%
! AATCTATTGGTGCTTCTGAT+TGG - chr1_3:9424475-9424494 Msa0102570:intron 35.0%
AAAACTGTTGGCATTGCAAT+AGG + chr1_3:9424508-9424527 None:intergenic 35.0%
TTGTCAGTTACAATGGCTAT+TGG - chr1_3:9424526-9424545 Msa0102570:intron 35.0%
AAAGAGAATGATAGCCATTG+AGG - chr1_3:9424582-9424601 Msa0102570:intron 35.0%
AATGATAGCCATTGAGGAAA+TGG - chr1_3:9424588-9424607 Msa0102570:intron 35.0%
CTCCAACAACAGTTATACTA+AGG + chr1_3:9424674-9424693 None:intergenic 35.0%
TACTATCACAATTCAGACCT+CGG + chr1_3:9424767-9424786 None:intergenic 35.0%
TGATTCTGCATGTTAAAGTC+TGG + chr1_3:9424961-9424980 None:intergenic 35.0%
TAACATGCAGAATCAACAAG+AGG - chr1_3:9424966-9424985 Msa0102570:intron 35.0%
CAACAAGAGGTAAGTGTTAT+AGG - chr1_3:9424979-9424998 Msa0102570:intron 35.0%
GTTATAGGAGCAATTCTCTT+TGG - chr1_3:9424994-9425013 Msa0102570:intron 35.0%
CGAACTATTCATGATAGTAG+AGG - chr1_3:9425059-9425078 Msa0102570:intron 35.0%
GTAGAGGGAAAAAAGATTTC+AGG - chr1_3:9425075-9425094 Msa0102570:intron 35.0%
TAGGGGAAAAGTAAGAAAGA+AGG + chr1_3:9425329-9425348 None:intergenic 35.0%
GGCAAATTGTGCAGATAAAA+CGG - chr1_3:9425375-9425394 Msa0102570:intron 35.0%
AAGTCTTCCTCAAAGTTGTA+CGG + chr1_3:9425436-9425455 None:intergenic 35.0%
TGAGGAAGACTTTCTAGATT+TGG - chr1_3:9425444-9425463 Msa0102570:intron 35.0%
TTCTCAATAAGTTCATCGAC+CGG + chr1_3:9425777-9425796 None:intergenic 35.0%
!! ATAACAATTCTAGCCTTGCT+TGG - chr1_3:9425893-9425912 Msa0102570:intron 35.0%
!! TAACAATTCTAGCCTTGCTT+GGG - chr1_3:9425894-9425913 Msa0102570:intron 35.0%
CTTATCTGGGTTATGAATCA+AGG + chr1_3:9425931-9425950 None:intergenic 35.0%
CTTGATTCATAACCCAGATA+AGG - chr1_3:9425929-9425948 Msa0102570:five_prime_UTR 35.0%
!! GCATGGCTCTAATAAGATAT+TGG - chr1_3:9426009-9426028 Msa0102570:five_prime_UTR 35.0%
TGTGTGGCTTATATCTTTGA+TGG - chr1_3:9426068-9426087 Msa0102570:five_prime_UTR 35.0%
!!! TGATTTTTTCTGTTGCAGAG+TGG - chr1_3:9426133-9426152 Msa0102570:five_prime_UTR 35.0%
ATAGTTCTTGATGCCTCATT+TGG + chr1_3:9426338-9426357 None:intergenic 35.0%
! GGCATCAAGAACTATTTTGT+TGG - chr1_3:9426343-9426362 Msa0102570:five_prime_UTR 35.0%
! AGAGTCTGATTTCTAGAGAG+AGG + chr1_3:9420495-9420514 None:intergenic 40.0%
!! TGGCTAAGTTTGATGGATTG+GGG + chr1_3:9420561-9420580 None:intergenic 40.0%
AAACAAGGAAGAATGAGGCT+AGG - chr1_3:9420798-9420817 Msa0102570:intron 40.0%
AACAAGGAAGAATGAGGCTA+GGG - chr1_3:9420799-9420818 Msa0102570:intron 40.0%
ATTGCCAAACCAAACCACTA+TGG + chr1_3:9420872-9420891 None:intergenic 40.0%
! TTTGGGTCAATGCTGGATTT+TGG - chr1_3:9420929-9420948 Msa0102570:intron 40.0%
!! ATGACCGTTTTTCTGACAGT+AGG + chr1_3:9421136-9421155 None:intergenic 40.0%
ACGGTCATAAATACTTGTGC+TGG - chr1_3:9421148-9421167 Msa0102570:CDS 40.0%
AAAATATTCGGTTCACTGCC+TGG - chr1_3:9421517-9421536 Msa0102570:intron 40.0%
CTGCCTGGATTGAAATTACA+AGG - chr1_3:9421532-9421551 Msa0102570:intron 40.0%
! GAAGCATATGTCTGAAGCTA+TGG - chr1_3:9421558-9421577 Msa0102570:intron 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG - chr1_3:9421584-9421603 Msa0102570:intron 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG - chr1_3:9421585-9421604 Msa0102570:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG - chr1_3:9421620-9421639 Msa0102570:intron 40.0%
AATAAGTCATGGTGAGTTCG+TGG - chr1_3:9421668-9421687 Msa0102570:intron 40.0%
CACTCATGACCAATAACCAT+TGG + chr1_3:9421998-9422017 None:intergenic 40.0%
TTATTGGTCATGAGTGTGCT+GGG - chr1_3:9422002-9422021 Msa0102570:CDS 40.0%
TGGTGGTCAGATAAAGACTT+TGG - chr1_3:9422039-9422058 Msa0102570:intron 40.0%
! CAGATAAAGACTTTGGTGAC+GGG - chr1_3:9422046-9422065 Msa0102570:intron 40.0%
CGTTGTCATAATTGCAGACT+TGG - chr1_3:9422106-9422125 Msa0102570:intron 40.0%
GTTCTAGCACTTTAGTGTAG+TGG - chr1_3:9422349-9422368 Msa0102570:CDS 40.0%
AATCCGAAACTAGATTCCTG+CGG - chr1_3:9422436-9422455 Msa0102570:CDS 40.0%
GATTCTTGAGCCTATTCTGT+AGG + chr1_3:9422891-9422910 None:intergenic 40.0%
CATGTACAGGAACAGAAACA+GGG + chr1_3:9422974-9422993 None:intergenic 40.0%
ACATGTACAGGAACAGAAAC+AGG + chr1_3:9422975-9422994 None:intergenic 40.0%
TTGGCATTCTAAGCTTTCCA+AGG - chr1_3:9423057-9423076 Msa0102570:intron 40.0%
AGAAAAGTTCCTCTCCCTTA+TGG + chr1_3:9423474-9423493 None:intergenic 40.0%
! AGGGAGAGGAACTTTTCTAA+TGG - chr1_3:9423476-9423495 Msa0102570:intron 40.0%
CATTATGCATATTGTTGCGC+AGG - chr1_3:9423562-9423581 Msa0102570:intron 40.0%
TAACTTAGTGTGCACCAACT+GGG + chr1_3:9423668-9423687 None:intergenic 40.0%
TCCTCATGTGCCTTTATACT+TGG - chr1_3:9423801-9423820 Msa0102570:intron 40.0%
! TCCAAGTATAAAGGCACATG+AGG + chr1_3:9423805-9423824 None:intergenic 40.0%
GAATTGTTTACCAAGAACCC+TGG - chr1_3:9423953-9423972 Msa0102570:intron 40.0%
TGTGCACATCTTCTTTGGTA+AGG - chr1_3:9424042-9424061 Msa0102570:intron 40.0%
GTCGACAACACTAACCAAAT+TGG - chr1_3:9424076-9424095 Msa0102570:intron 40.0%
CTGCATTTGCTCAATTGCTT+TGG - chr1_3:9424387-9424406 Msa0102570:intron 40.0%
CAATTCCACTCCTATACTTG+CGG + chr1_3:9424453-9424472 None:intergenic 40.0%
!! CAATGGCTATTGGTTCACAT+AGG - chr1_3:9424536-9424555 Msa0102570:intron 40.0%
TATACTAAGGTTGGATCCTG+TGG + chr1_3:9424661-9424680 None:intergenic 40.0%
! ATAACTGTTGTTGGAGCATC+TGG - chr1_3:9424678-9424697 Msa0102570:intron 40.0%
! TAGAAAAGAGCAAAGAGTGC+TGG + chr1_3:9424730-9424749 None:intergenic 40.0%
ACTATCACAATTCAGACCTC+GGG + chr1_3:9424766-9424785 None:intergenic 40.0%
!!! GATTTTCAAGTGCATGTGGA+TGG + chr1_3:9425160-9425179 None:intergenic 40.0%
TTCTTGTCCGTACAACTTTG+AGG - chr1_3:9425426-9425445 Msa0102570:intron 40.0%
AGAGAAAGAGGTAATGCTTG+AGG - chr1_3:9425480-9425499 Msa0102570:intron 40.0%
TAAGATGATTACCGGTGATC+AGG - chr1_3:9425647-9425666 Msa0102570:intron 40.0%
GGTCGATGAACTTATTGAGA+AGG - chr1_3:9425776-9425795 Msa0102570:intron 40.0%
GAACTTATTGAGAAGGCTGA+TGG - chr1_3:9425783-9425802 Msa0102570:intron 40.0%
!! GAGAAGGCTGATGGATTTAT+TGG - chr1_3:9425792-9425811 Msa0102570:intron 40.0%
GACAAACTATTTCCCAAGCA+AGG + chr1_3:9425909-9425928 None:intergenic 40.0%
TCATAACCCAGATAAGGTCA+AGG - chr1_3:9425935-9425954 Msa0102570:five_prime_UTR 40.0%
CATTTGCCTTGACCTTATCT+GGG + chr1_3:9425944-9425963 None:intergenic 40.0%
GCACTCAATTCATAGAAGCA+TGG - chr1_3:9425992-9426011 Msa0102570:five_prime_UTR 40.0%
TGGAAAATACTAAGCAGAGG+AGG + chr1_3:9426318-9426337 None:intergenic 40.0%
GCGTGAGATGTTTACAGAGA+AGG + chr1_3:9420521-9420540 None:intergenic 45.0%
!! CTAAGTTTGATGGATTGGGG+TGG + chr1_3:9420558-9420577 None:intergenic 45.0%
CTGAAAGTTTGGGTCAATGC+TGG - chr1_3:9420922-9420941 Msa0102570:intron 45.0%
AGAAGGCAGAAACTATGAGC+TGG - chr1_3:9420981-9421000 Msa0102570:intron 45.0%
GTTATTGGTCATGAGTGTGC+TGG - chr1_3:9422001-9422020 Msa0102570:CDS 45.0%
GCTGGGATCATTGAAGAAGT+TGG - chr1_3:9422019-9422038 Msa0102570:CDS 45.0%
GGGATCATTGAAGAAGTTGG+TGG - chr1_3:9422022-9422041 Msa0102570:CDS 45.0%
TTTGCTACTCCACCAGTTCA+TGG - chr1_3:9422160-9422179 Msa0102570:intron 45.0%
! CTACCGCAGGAATCTAGTTT+CGG + chr1_3:9422442-9422461 None:intergenic 45.0%
AGAGGCTCACACATGACATT+TGG + chr1_3:9423602-9423621 None:intergenic 45.0%
GTAACTTAGTGTGCACCAAC+TGG + chr1_3:9423669-9423688 None:intergenic 45.0%
GGAATATGTGCACAATCGCT+AGG - chr1_3:9423822-9423841 Msa0102570:intron 45.0%
CGAAGTAGACTTCATGACCA+GGG + chr1_3:9423973-9423992 None:intergenic 45.0%
CCTGGTCATGAAGTCTACTT+CGG - chr1_3:9423971-9423990 Msa0102570:intron 45.0%
TTCGGCTCTACTGTAAAGCA+AGG - chr1_3:9423989-9424008 Msa0102570:intron 45.0%
TGTAAAGCAAGGAGAACTCG+AGG - chr1_3:9424000-9424019 Msa0102570:intron 45.0%
GAGGCGATTGTAATTGCTAC+TGG - chr1_3:9424019-9424038 Msa0102570:intron 45.0%
ACTGGTGTGCACATCTTCTT+TGG - chr1_3:9424037-9424056 Msa0102570:intron 45.0%
CTTTGGTAAGGCTGCTCATT+TGG - chr1_3:9424054-9424073 Msa0102570:intron 45.0%
! GATCATGTGTTGACAGCCAT+CGG - chr1_3:9424358-9424377 Msa0102570:intron 45.0%
GCAAATGCAGAAGTTACCGA+TGG + chr1_3:9424377-9424396 None:intergenic 45.0%
! CTATACTTGCGGCACTGAAT+AGG + chr1_3:9424442-9424461 None:intergenic 45.0%
CTATTCAGTGCCGCAAGTAT+AGG - chr1_3:9424440-9424459 Msa0102570:intron 45.0%
! CTATTGGTGCTTCTGATTGG+AGG - chr1_3:9424478-9424497 Msa0102570:intron 45.0%
TCACATAGGTTGTCTCAGCA+AGG - chr1_3:9424550-9424569 Msa0102570:intron 45.0%
CATTGCAGCCATTTCCTCAA+TGG + chr1_3:9424599-9424618 None:intergenic 45.0%
CATTGAGGAAATGGCTGCAA+TGG - chr1_3:9424597-9424616 Msa0102570:intron 45.0%
TTGTCAGACTCTGAATCCAC+AGG - chr1_3:9424642-9424661 Msa0102570:intron 45.0%
! CTATGAAGATTGGTTACCCG+AGG - chr1_3:9424747-9424766 Msa0102570:CDS 45.0%
!!! AGGGGATTTTCAAGTGCATG+TGG + chr1_3:9425164-9425183 None:intergenic 45.0%
! TGATCAGGTCTGTATTGGCA+AGG - chr1_3:9425662-9425681 Msa0102570:intron 45.0%
! GTCTGTATTGGCAAGGAAAC+TGG - chr1_3:9425669-9425688 Msa0102570:intron 45.0%
TCAATAAGTTCATCGACCGG+AGG + chr1_3:9425774-9425793 None:intergenic 45.0%
! GGATTTATTGGTGTCTTCCC+TGG - chr1_3:9425804-9425823 Msa0102570:intron 45.0%
GCATTTGCCTTGACCTTATC+TGG + chr1_3:9425945-9425964 None:intergenic 45.0%
! GAAATATGGCGTTGAGCAGT+AGG - chr1_3:9426178-9426197 Msa0102570:five_prime_UTR 45.0%
GTTCTATAGAGTGCATGAGC+AGG + chr1_3:9426218-9426237 None:intergenic 45.0%
!!! TATAAATATAATTTTAGTTT+TGG + chr1_3:9423034-9423053 None:intergenic 5.0%
!! TAAAATTATATTTATAATCT+TGG - chr1_3:9423038-9423057 Msa0102570:intron 5.0%
!! TGATGGATTGGGGTGGAAGA+AGG + chr1_3:9420551-9420570 None:intergenic 50.0%
GCTAGGAGGGAAAAGAGGAA+AGG + chr1_3:9420668-9420687 None:intergenic 50.0%
GTTCAGCTAGGAGGGAAAAG+AGG + chr1_3:9420673-9420692 None:intergenic 50.0%
GTGGTTGAGTTCAGCTAGGA+GGG + chr1_3:9420681-9420700 None:intergenic 50.0%
TGTGGTTGAGTTCAGCTAGG+AGG + chr1_3:9420682-9420701 None:intergenic 50.0%
GCTTGTGGTTGAGTTCAGCT+AGG + chr1_3:9420685-9420704 None:intergenic 50.0%
GGAAGAATGAGGCTAGGGTT+TGG - chr1_3:9420804-9420823 Msa0102570:intron 50.0%
! CTAGGGTTTGGTTGTTCTGC+TGG - chr1_3:9420816-9420835 Msa0102570:intron 50.0%
TGGTTGTTCTGCTGGAAGAG+TGG - chr1_3:9420824-9420843 Msa0102570:intron 50.0%
GGTTGTTCTGCTGGAAGAGT+GGG - chr1_3:9420825-9420844 Msa0102570:intron 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG - chr1_3:9421592-9421611 Msa0102570:intron 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG - chr1_3:9421593-9421612 Msa0102570:intron 50.0%
!! TCGAGCCTGGGATTAGTTGT+TGG - chr1_3:9422083-9422102 Msa0102570:intron 50.0%
CAACGCCAACAACTAATCCC+AGG + chr1_3:9422091-9422110 None:intergenic 50.0%
TTAGCGAGTGAGCCATGAAC+TGG + chr1_3:9422175-9422194 None:intergenic 50.0%
TCATGGCTCACTCGCTAATC+AGG - chr1_3:9422177-9422196 Msa0102570:intron 50.0%
CGAACATGATGAGAATCGCC+AGG - chr1_3:9423886-9423905 Msa0102570:intron 50.0%
GACTTCATGACCAGGGTTCT+TGG + chr1_3:9423966-9423985 None:intergenic 50.0%
CCGAAGTAGACTTCATGACC+AGG + chr1_3:9423974-9423993 None:intergenic 50.0%
TGAGGAAATGGCTGCAATGG+TGG - chr1_3:9424600-9424619 Msa0102570:intron 50.0%
ACCGGTGATCAGGTCTGTAT+TGG - chr1_3:9425657-9425676 Msa0102570:intron 50.0%
GCCAATACAGACCTGATCAC+CGG + chr1_3:9425661-9425680 None:intergenic 50.0%
TATCCATCATCCTCCCTCCT+TGG - chr1_3:9425720-9425739 Msa0102570:intron 50.0%
ATCCTTGTGCTTGCCAAGGA+GGG + chr1_3:9425736-9425755 None:intergenic 50.0%
ATGCATCCTTGTGCTTGCCA+AGG + chr1_3:9425740-9425759 None:intergenic 50.0%
!! TGCATCGATTGCTTCACCTC+CGG - chr1_3:9425755-9425774 Msa0102570:intron 50.0%
GGATTGGGGTGGAAGAAGGA+GGG + chr1_3:9420547-9420566 None:intergenic 55.0%
! TGGATTGGGGTGGAAGAAGG+AGG + chr1_3:9420548-9420567 None:intergenic 55.0%
GTTCTGCTGGAAGAGTGGGT+AGG - chr1_3:9420829-9420848 Msa0102570:intron 55.0%
GAGGGCTGAAGGGATAGCAA+TGG - chr1_3:9421603-9421622 Msa0102570:intron 55.0%
ACCGTGTGACAATCGAGCCT+GGG - chr1_3:9422071-9422090 Msa0102570:intron 55.0%
TCCCAGGCTCGATTGTCACA+CGG + chr1_3:9422075-9422094 None:intergenic 55.0%
CAGTGCCGCAAGTATAGGAG+TGG - chr1_3:9424445-9424464 Msa0102570:intron 55.0%
TTGGCAAGGAAACTGGTCGC+AGG - chr1_3:9425676-9425695 Msa0102570:intron 55.0%
AAGGAAACTGGTCGCAGGCT+CGG - chr1_3:9425681-9425700 Msa0102570:intron 55.0%
TTGCCAAGGAGGGAGGATGA+TGG + chr1_3:9425726-9425745 None:intergenic 55.0%
CATCCTTGTGCTTGCCAAGG+AGG + chr1_3:9425737-9425756 None:intergenic 55.0%
! GGCGTTGAGCAGTAGGATAC+TGG - chr1_3:9426185-9426204 Msa0102570:five_prime_UTR 55.0%
TGGGGTGGAAGAAGGAGGGA+AGG + chr1_3:9420543-9420562 None:intergenic 60.0%
GACCGTGTGACAATCGAGCC+TGG - chr1_3:9422070-9422089 Msa0102570:intron 60.0%
GCGAGTGAGCCATGAACTGG+TGG + chr1_3:9422172-9422191 None:intergenic 60.0%
GGCTGCAATGGTGGCTGCAA+TGG - chr1_3:9424609-9424628 Msa0102570:intron 60.0%
CTTGTGCTTGCCAAGGAGGG+AGG + chr1_3:9425733-9425752 None:intergenic 60.0%
CTCCCTCCTTGGCAAGCACA+AGG - chr1_3:9425731-9425750 Msa0102570:intron 60.0%
AACTGGTCGCAGGCTCGGCA+TGG - chr1_3:9425686-9425705 Msa0102570:intron 65.0%
ACTGGTCGCAGGCTCGGCAT+GGG - chr1_3:9425687-9425706 Msa0102570:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 9420478 9426467 9420478 ID=Msa0102570;Name=Msa0102570
chr1_3 mRNA 9420478 9426467 9420478 ID=Msa0102570-mRNA-1;Parent=Msa0102570;Name=Msa0102570-mRNA-1;_AED=0.30;_eAED=0.39;_QI=554|0.16|0.71|1|0.83|0.85|7|300|303
chr1_3 exon 9420478 9420794 9420478 ID=Msa0102570-mRNA-1:exon:3843;Parent=Msa0102570-mRNA-1
chr1_3 exon 9421120 9421307 9421120 ID=Msa0102570-mRNA-1:exon:3842;Parent=Msa0102570-mRNA-1
chr1_3 exon 9421958 9422052 9421958 ID=Msa0102570-mRNA-1:exon:3841;Parent=Msa0102570-mRNA-1
chr1_3 exon 9422270 9422497 9422270 ID=Msa0102570-mRNA-1:exon:3840;Parent=Msa0102570-mRNA-1
chr1_3 exon 9422834 9422977 9422834 ID=Msa0102570-mRNA-1:exon:3839;Parent=Msa0102570-mRNA-1
chr1_3 exon 9424747 9424983 9424747 ID=Msa0102570-mRNA-1:exon:3838;Parent=Msa0102570-mRNA-1
chr1_3 exon 9425911 9426467 9425911 ID=Msa0102570-mRNA-1:exon:3837;Parent=Msa0102570-mRNA-1
chr1_3 five_prime_UTR 9425914 9426467 9425914 ID=Msa0102570-mRNA-1:five_prime_utr;Parent=Msa0102570-mRNA-1
chr1_3 CDS 9425911 9425913 9425911 ID=Msa0102570-mRNA-1:cds;Parent=Msa0102570-mRNA-1
chr1_3 CDS 9424747 9424983 9424747 ID=Msa0102570-mRNA-1:cds;Parent=Msa0102570-mRNA-1
chr1_3 CDS 9422834 9422977 9422834 ID=Msa0102570-mRNA-1:cds;Parent=Msa0102570-mRNA-1
chr1_3 CDS 9422270 9422497 9422270 ID=Msa0102570-mRNA-1:cds;Parent=Msa0102570-mRNA-1
chr1_3 CDS 9421958 9422052 9421958 ID=Msa0102570-mRNA-1:cds;Parent=Msa0102570-mRNA-1
chr1_3 CDS 9421120 9421307 9421120 ID=Msa0102570-mRNA-1:cds;Parent=Msa0102570-mRNA-1
chr1_3 CDS 9420778 9420794 9420778 ID=Msa0102570-mRNA-1:cds;Parent=Msa0102570-mRNA-1
chr1_3 three_prime_UTR 9420478 9420777 9420478 ID=Msa0102570-mRNA-1:three_prime_utr;Parent=Msa0102570-mRNA-1
Gene Sequence

>Msa0102570

ATGACACTAAGATGTGCAGATTTTATAGTTAAGGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATTGAAGAAGTTGGTGGTCAGATAAAGACTTTGGTGACGGGTGACCGTGTGACAATCGAGCCTGGGATTAGTTGTTGGCGTTGTCATAATTGCAGACTTGGTCGATATAATCTATGCCTTGATATGAAGTTTTTTGCTACTCCACCAGTTCATGGCTCACTCGCTAATCAGAACCCTGGTCATGAAGTCTACTTCGGCTCTACTGTAAAGCAAGGAGAACTCGAGGCGATTGTAATTGCTACTGGTGTGCACATCTTCTTTGGTAAGGCTGCTCATTTGGTCGACAACACTAACCAAATTGGTCATTTCCAAAAGTGCCGCAAGTATAGGAGTGGAATTGACAATCTATTGGTGCTTCTGATTGGAGGAATTCCTATTGCAATGCCAACAGTTTTGTCAGTTACAATGGCTATTGGTTCACATAGGTTGTCTCAGCAAGGTGCTATCACAAAGAGAATGATAGCCATTGAGGAAATGGCTGCAATGGTGGCTGCAATGGATTGTTTTCGTTGTCAGACTCTGAATCCACAGGATCCAACCTTAAATTTTATTGTGTTTGGATATGCTCAGACCAAAATGACTGATGAAGAGTTAAGGAACATGATTAGCCAGACTTTAACATGCAGAATCAACAAGAGAGTAAATGTTAAGATGATTACCGGTGATCAGGTCTGTATTGGCAAGGAAACTGGTCGCAGGCTCGGCATGGGAAGTAACATGTATCCATCATCCTCCCTCCTTGGCAAGCACAAGGATGCATCGATTGCTTCACCTCCGGTCGATGAACTTATTGAGAAGGCTGATGGATTTATTGGTGTCTTCCCTGAGTGGAAACTGTTATGA
Protein sequence

>Msa0102570

MTLRCADFIVKEPMVIGHECAGIIEEVGGQIKTLVTGDRVTIEPGISCWRCHNCRLGRYNLCLDMKFFATPPVHGSLANQNPGHEVYFGSTVKQGELEAIVIATGVHIFFGKAAHLVDNTNQIGHFQKCRKYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMIAIEEMAAMVAAMDCFRCQTLNPQDPTLNFIVFGYAQTKMTDEELRNMISQTLTCRINKRVNVKMITGDQVCIGKETGRRLGMGSNMYPSSSLLGKHKDASIASPPVDELIEKADGFIGVFPEWKLL*