AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1048660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048660 MtrunA17_Chr2g0333721 92.754 69 5 0 1 69 255 323 9.41e-37 130
Msa1048660 MtrunA17_Chr4g0065481 88.406 69 8 0 1 69 258 326 2.76e-35 126
Msa1048660 MtrunA17_Chr1g0147981 88.406 69 8 0 1 69 274 342 2.99e-35 126
Msa1048660 MtrunA17_Chr6g0452721 88.406 69 8 0 1 69 259 327 3.88e-35 125
Msa1048660 MtrunA17_Chr3g0138931 88.406 69 8 0 1 69 257 325 4.53e-35 125
Msa1048660 MtrunA17_Chr2g0304941 88.406 69 8 0 1 69 258 326 4.89e-35 125
Msa1048660 MtrunA17_Chr4g0072131 88.406 69 8 0 1 69 260 328 5.78e-35 125
Msa1048660 MtrunA17_Chr1g0148031 85.507 69 10 0 1 69 257 325 9.30e-35 124
Msa1048660 MtrunA17_Chr4g0059961 86.957 69 9 0 1 69 261 329 1.36e-34 124
Msa1048660 MtrunA17_Chr8g0365021 85.507 69 10 0 1 69 327 395 1.99e-34 123
Msa1048660 MtrunA17_Chr2g0298031 85.507 69 10 0 1 69 262 330 4.19e-34 122
Msa1048660 MtrunA17_Chr7g0276551 79.710 69 14 0 1 69 23 91 3.31e-32 117
Msa1048660 MtrunA17_Chr8g0335291 79.710 69 14 0 1 69 265 333 2.98e-31 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048660 AT4G30190.1 89.855 69 7 0 1 69 255 323 1.12e-35 127
Msa1048660 AT2G07560.1 88.406 69 8 0 1 69 258 326 1.19e-35 127
Msa1048660 AT4G30190.2 89.855 69 7 0 1 69 255 323 1.21e-35 127
Msa1048660 AT1G80660.1 89.855 69 7 0 1 69 260 328 2.85e-35 126
Msa1048660 AT1G80660.3 89.855 69 7 0 1 69 260 328 3.05e-35 126
Msa1048660 AT1G80660.4 89.855 69 7 0 1 69 260 328 3.05e-35 126
Msa1048660 AT5G62670.1 91.304 69 6 0 1 69 259 327 5.85e-35 125
Msa1048660 AT1G80660.2 89.855 69 7 0 1 69 131 199 6.95e-35 125
Msa1048660 AT2G18960.1 92.537 67 5 0 3 69 257 323 9.05e-35 125
Msa1048660 AT2G18960.3 92.537 67 5 0 3 69 193 259 1.10e-34 124
Msa1048660 AT2G18960.2 92.537 67 5 0 3 69 193 259 1.10e-34 124
Msa1048660 AT3G47950.1 89.855 69 7 0 1 69 263 331 1.31e-34 124
Msa1048660 AT3G47950.2 89.855 69 7 0 1 69 263 331 1.31e-34 124
Msa1048660 AT3G42640.1 86.957 69 9 0 1 69 258 326 2.13e-34 124
Msa1048660 AT5G57350.4 89.552 67 7 0 3 69 258 324 8.96e-34 122
Msa1048660 AT5G57350.2 89.552 67 7 0 3 69 258 324 8.96e-34 122
Msa1048660 AT5G57350.1 89.552 67 7 0 3 69 258 324 8.96e-34 122
Msa1048660 AT2G24520.3 81.159 69 13 0 1 69 237 305 3.70e-32 117
Msa1048660 AT2G24520.1 81.159 69 13 0 1 69 237 305 3.70e-32 117
Msa1048660 AT2G24520.2 81.159 69 13 0 1 69 300 368 4.08e-32 117
Msa1048660 AT1G17260.1 79.710 69 14 0 1 69 263 331 5.72e-32 117
Msa1048660 AT3G60330.2 82.609 69 12 0 1 69 258 326 3.77e-31 114
Msa1048660 AT3G60330.1 82.609 69 12 0 1 69 258 326 3.77e-31 114
Msa1048660 AT3G60330.4 82.609 69 12 0 1 69 258 326 3.81e-31 114
Msa1048660 AT3G60330.3 82.609 69 12 0 1 69 258 326 3.81e-31 114
Msa1048660 AT5G57350.3 88.710 62 7 0 8 69 1 62 9.15e-31 113
Msa1048660 AT2G24520.4 85.484 62 9 0 8 69 1 62 1.49e-29 110
Msa1048660 AT4G11730.1 59.701 67 27 0 3 69 259 325 5.60e-19 80.1

Find 176 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGAAATTTGCAGAAAA+AGG 0.178905 7_2:+10383460 Msa1048660:five_prime_UTR
TGTTGATTTCCATTAAAATT+TGG 0.183698 7_2:-10383143 None:intergenic
CCATGAATGCAGTTATAAAA+TGG 0.219954 7_2:+10386284 Msa1048660:intron
TTTGGGTCAATGCTGGATTT+TGG 0.222386 7_2:+10383494 Msa1048660:five_prime_UTR
ACTACAGAACTCATGTTTAA+AGG 0.240330 7_2:+10388754 Msa1048660:three_prime_UTR
TAACTCTTCATCAGTCATTT+TGG 0.241437 7_2:-10387453 None:intergenic
TGCATTTGCTCAATTGCTTT+GGG 0.264099 7_2:+10386920 Msa1048660:five_prime_UTR
CTGCATTTGCTCAATTGCTT+TGG 0.275397 7_2:+10386919 Msa1048660:five_prime_UTR
TTTGCTACTCCACCAGTTCA+TGG 0.280224 7_2:+10384726 Msa1048660:five_prime_UTR
TAAAATTTGGCTAAGTTTGA+TGG 0.282820 7_2:-10383130 None:intergenic
TGAGGAAGACTTTCTAGATT+TGG 0.283512 7_2:+10387953 Msa1048660:three_prime_UTR
AATGTTCATGTTAAAATATT+CGG 0.294883 7_2:+10384070 Msa1048660:five_prime_UTR
GACATAAATTAACTTGAAAT+AGG 0.301220 7_2:+10383954 Msa1048660:five_prime_UTR
GTTAAGGAACCAATGGTTAT+TGG 0.303921 7_2:+10384552 Msa1048660:five_prime_UTR
AATTTATGTCTTCTTTCTAA+TGG 0.311501 7_2:-10383941 None:intergenic
CTTTGGTAAGGCTGCTCATT+TGG 0.311734 7_2:+10386617 Msa1048660:five_prime_UTR
ATAGTTCTTGACGCCTCATT+TGG 0.315834 7_2:-10388844 None:intergenic
ACTGGTGTGCACATCTTCTT+TGG 0.327169 7_2:+10386600 Msa1048660:five_prime_UTR
ATATTAACTGAAACCATTAA+AGG 0.329851 7_2:-10388877 None:intergenic
AATTAACTTGAAATAGGCTT+TGG 0.330131 7_2:+10383960 Msa1048660:five_prime_UTR
AAGGGTTTGTTAGTTGGTTA+TGG 0.331001 7_2:+10383638 Msa1048660:five_prime_UTR
GACAAAATTTAACACGAAAT+AGG 0.332385 7_2:+10383773 Msa1048660:five_prime_UTR
ATAACTGTTGTTGGAGCATC+TGG 0.335491 7_2:+10387210 Msa1048660:exon
CGTTGTCATAATTGCAAACT+TGG 0.336114 7_2:+10384672 Msa1048660:five_prime_UTR
TCCTCATGTGCCTTTATACT+TGG 0.338292 7_2:+10386364 Msa1048660:five_prime_UTR
CTTTCAGAAAGCTTCTACTA+AGG 0.340021 7_2:+10386319 Msa1048660:five_prime_UTR
CTAGGGTTTGGTTGTTCTGC+TGG 0.345242 7_2:+10383381 Msa1048660:five_prime_UTR
ATGAATAGATGAGGGAAATA+TGG 0.357324 7_2:+10388673 Msa1048660:three_prime_UTR
TCATGGCTCACTCGCTAATC+AGG 0.358134 7_2:+10384743 Msa1048660:five_prime_UTR
TTTGGCTAAGTTTGATGGAT+TGG 0.358397 7_2:-10383125 None:intergenic
AATATTTATCCATTGTGATT+TGG 0.368314 7_2:+10383425 Msa1048660:five_prime_UTR
TTATCCATTGTGATTTGGTT+TGG 0.368648 7_2:+10383430 Msa1048660:five_prime_UTR
CTACAGAACTCATGTTTAAA+GGG 0.370536 7_2:+10388755 Msa1048660:three_prime_UTR
CAATGGCAAGAGCTTTGAAT+TGG 0.371039 7_2:+10384185 Msa1048660:five_prime_UTR
GTCTGTATTGGCAAGGAAAC+TGG 0.371690 7_2:+10388178 Msa1048660:three_prime_UTR
CTATACTTGCGGCACTGAAT+AGG 0.375229 7_2:-10386971 None:intergenic
GTCGACAACACTAACCAAAT+TGG 0.375277 7_2:+10386639 Msa1048660:five_prime_UTR
AACCTTAGTATAACTGTTGT+TGG 0.383313 7_2:+10387201 Msa1048660:exon
TTGGCTAAGTTTGATGGATT+GGG 0.393848 7_2:-10383124 None:intergenic
ATAGAGAAGGGTTTGTTAGT+TGG 0.395077 7_2:+10383632 Msa1048660:five_prime_UTR
AAAAGGATTACTGAAAGTTT+GGG 0.396958 7_2:+10383477 Msa1048660:five_prime_UTR
TGCACATATTCCAAGTATAA+AGG 0.396963 7_2:-10386374 None:intergenic
AAAACTGTTGGCATTGCAAT+AGG 0.398141 7_2:-10387037 None:intergenic
AATCTATTGGTGCTTCTGAT+TGG 0.400461 7_2:+10387007 Msa1048660:CDS
CTATTCAGTGCCGCAAGTAT+AGG 0.401900 7_2:+10386972 Msa1048660:CDS
AATGATAGCCATTGAGGAAA+TGG 0.403111 7_2:+10387120 Msa1048660:CDS
TAATCTGATTCAGAAGGTTA+TGG 0.405157 7_2:+10383578 Msa1048660:five_prime_UTR
TTGTCAGATACAATGGCTAT+TGG 0.405434 7_2:+10387058 Msa1048660:CDS
TGATGGATTGGGGTGGAAGA+AGG 0.416849 7_2:-10383113 None:intergenic
TTGAGTGAAAATTGAACCAT+TGG 0.422266 7_2:+10383744 Msa1048660:five_prime_UTR
CTGAAAGTTTGGGTCAATGC+TGG 0.428752 7_2:+10383487 Msa1048660:five_prime_UTR
GGCAAATTGTGCAGATAAAA+CGG 0.429890 7_2:+10387884 Msa1048660:three_prime_UTR
AAAATATTCGGTTCACTGCC+TGG 0.430722 7_2:+10384082 Msa1048660:five_prime_UTR
GTTCAAAACTTGTGAGTTTG+TGG 0.433149 7_2:-10383262 None:intergenic
GACCGTGTGACAATCGAGCC+TGG 0.434046 7_2:+10384636 Msa1048660:five_prime_UTR
AAAATCTGAAGTGTTGTTGT+TGG 0.434111 7_2:+10383866 Msa1048660:five_prime_UTR
GGCGTTGAGCAGTAGGATAC+TGG 0.437103 7_2:+10388694 Msa1048660:three_prime_UTR
GGATTTGTTGGTGTCTTCCC+TGG 0.438451 7_2:+10388313 Msa1048660:three_prime_UTR
GAACAATTTAATCCTTATGC+AGG 0.443965 7_2:+10383191 Msa1048660:five_prime_UTR
CTGCCTGGATTGAAATTACA+AGG 0.445771 7_2:+10384097 Msa1048660:five_prime_UTR
CATTGCAGCCATTTCCTCAA+TGG 0.448211 7_2:-10387128 None:intergenic
GGCTGCAATGGTGGCTGCAA+TGG 0.454503 7_2:+10387141 Msa1048660:CDS
GAGAAGGCTGATGGATTTGT+TGG 0.455540 7_2:+10388301 Msa1048660:three_prime_UTR
AAGCTTCAAATCTTGATCCT+TGG 0.470419 7_2:+10383169 Msa1048660:five_prime_UTR
GGAAGAATGAGGCTAGGGTT+TGG 0.476338 7_2:+10383369 Msa1048660:five_prime_UTR
GAAATATGGCGTTGAGCAGT+AGG 0.481183 7_2:+10388687 Msa1048660:three_prime_UTR
CTATTGGTGCTTCTGATTGG+AGG 0.482388 7_2:+10387010 Msa1048660:CDS
ACCGGTGATCAGGTCTGTAT+TGG 0.484326 7_2:+10388166 Msa1048660:intron
GTATAAGTCACATTTCAAAC+TGG 0.485868 7_2:-10383919 None:intergenic
AAGGAAACTGGTCGCAGGCT+CGG 0.486276 7_2:+10388190 Msa1048660:three_prime_UTR
TTAATTCAATTATGTTATGA+TGG 0.487920 7_2:+10383989 Msa1048660:five_prime_UTR
AACTGGTCGCAGGCTCGGCA+TGG 0.489073 7_2:+10388195 Msa1048660:three_prime_UTR
AGTCCTTGTAATTTCAATCC+AGG 0.491538 7_2:-10384100 None:intergenic
TGATTCTGCATGTTAAAGTC+TGG 0.492401 7_2:-10387490 None:intergenic
TGGCTAAGTTTGATGGATTG+GGG 0.493585 7_2:-10383123 None:intergenic
AAATGACTGATGAAGAGTTA+AGG 0.494086 7_2:+10387456 Msa1048660:three_prime_UTR
GAAGCATATGTCTGAAGCTA+TGG 0.494484 7_2:+10384123 Msa1048660:five_prime_UTR
AAAATCTGCTCTATTGTGGT+TGG 0.495598 7_2:+10384047 Msa1048660:five_prime_UTR
TGGATTGGGGTGGAAGAAGG+AGG 0.497791 7_2:-10383110 None:intergenic
GAGGCGATTGTAATTGCTAC+TGG 0.499071 7_2:+10386582 Msa1048660:five_prime_UTR
GCGTGAGATGTTTAGAGAGA+AGG 0.500013 7_2:-10383083 None:intergenic
AGAGAAGAGAAGAGGGCTGA+AGG 0.500748 7_2:+10384157 Msa1048660:five_prime_UTR
AACAACAGTTATACTAAGGT+TGG 0.501460 7_2:-10387199 None:intergenic
GAACTTATTGAGAAGGCTGA+TGG 0.506893 7_2:+10388292 Msa1048660:three_prime_UTR
TAGAAAAGAGCAAAGAGTGC+TGG 0.507946 7_2:-10387259 None:intergenic
GAGAAGAGAAGAGGGCTGAA+GGG 0.509566 7_2:+10384158 Msa1048660:five_prime_UTR
TGTGCACATCTTCTTTGGTA+AGG 0.510568 7_2:+10386605 Msa1048660:five_prime_UTR
TGAATTTGATTAGATAGAGA+AGG 0.511241 7_2:+10383619 Msa1048660:five_prime_UTR
CTCCAACAACAGTTATACTA+AGG 0.511684 7_2:-10387203 None:intergenic
GAATTTGATTAGATAGAGAA+GGG 0.514715 7_2:+10383620 Msa1048660:five_prime_UTR
TATCCATCATCCTCCCTCCT+TGG 0.517757 7_2:+10388229 Msa1048660:three_prime_UTR
AAGAGCAAGAGAAGAGAAGA+GGG 0.517901 7_2:+10384150 Msa1048660:five_prime_UTR
TCGAGCCTGGGATCAGTTGT+TGG 0.519498 7_2:+10384649 Msa1048660:five_prime_UTR
ACTGGTCGCAGGCTCGGCAT+GGG 0.525330 7_2:+10388196 Msa1048660:three_prime_UTR
ACCGTGTGACAATCGAGCCT+GGG 0.525638 7_2:+10384637 Msa1048660:five_prime_UTR
GGATTGGGGTGGAAGAAGGA+GGG 0.526107 7_2:-10383109 None:intergenic
GAGTGGAATTGACAATCTAT+TGG 0.533730 7_2:+10386994 Msa1048660:CDS
AAAGAGAATGATAGCCATTG+AGG 0.536593 7_2:+10387114 Msa1048660:CDS
TTCCAAGCTAAAAGAGAAAG+AGG 0.537849 7_2:+10387977 Msa1048660:three_prime_UTR
GTGGTTGAGTTCAGCTAGGA+GGG 0.539245 7_2:-10383243 None:intergenic
GTTTGTGGTTGAGTTCAGCT+AGG 0.539389 7_2:-10383247 None:intergenic
TATACTAAGGTTGGATCCTG+TGG 0.540104 7_2:-10387190 None:intergenic
ATCCTTGTGCTTGCCAAGGA+GGG 0.542106 7_2:-10388242 None:intergenic
TGGTTGTTCTGCTGGAAGAG+TGG 0.542119 7_2:+10383389 Msa1048660:five_prime_UTR
GTTATTGGTCATGAGTGTGC+TGG 0.542398 7_2:+10384567 Msa1048660:five_prime_UTR
TGGTGGTCAGATAAAGACTT+TGG 0.543771 7_2:+10384605 Msa1048660:five_prime_UTR
GGTTGTTCTGCTGGAAGAGT+GGG 0.543940 7_2:+10383390 Msa1048660:five_prime_UTR
AACAAGGAAGAATGAGGCTA+GGG 0.544925 7_2:+10383364 Msa1048660:five_prime_UTR
TTCTCAATAAGTTCATCGAC+CGG 0.549212 7_2:-10388283 None:intergenic
CTCCCTCCTTGGCAAGCACA+AGG 0.551626 7_2:+10388240 Msa1048660:three_prime_UTR
AAACAAGGAAGAATGAGGCT+AGG 0.555234 7_2:+10383363 Msa1048660:five_prime_UTR
CAGATAAAGACTTTGGTGAC+GGG 0.555447 7_2:+10384612 Msa1048660:five_prime_UTR
CCGAAGTAGACTTCATGACC+AGG 0.557538 7_2:-10386534 None:intergenic
GGAATATGTGCACAATCGCT+AGG 0.559361 7_2:+10386385 Msa1048660:five_prime_UTR
TAAGAGCAAGAGAAGAGAAG+AGG 0.563133 7_2:+10384149 Msa1048660:five_prime_UTR
ACGGTCATAAATACTTGTGT+TGG 0.563859 7_2:+10383713 Msa1048660:five_prime_UTR
TTATTGTGTTTGGATATGCT+CGG 0.565032 7_2:+10387429 Msa1048660:three_prime_UTR
ATTGTATCTGACAAAACTGT+TGG 0.565242 7_2:-10387049 None:intergenic
GTAAGAAACAAGGAAGAATG+AGG 0.565874 7_2:+10383358 Msa1048660:five_prime_UTR
GAAACTGTTATGAATAGATG+AGG 0.566329 7_2:+10388664 Msa1048660:three_prime_UTR
CAATTCCACTCCTATACTTG+CGG 0.571367 7_2:-10386982 None:intergenic
CACTCATGACCAATAACCAT+TGG 0.574816 7_2:-10384561 None:intergenic
GGTCGATGAACTTATTGAGA+AGG 0.577418 7_2:+10388285 Msa1048660:three_prime_UTR
CATCCTTGTGCTTGCCAAGG+AGG 0.577904 7_2:-10388243 None:intergenic
TAAGCTTAATCTGATTCAGA+AGG 0.578193 7_2:+10383572 Msa1048660:five_prime_UTR
TGCATCGATTGCTTCACCTC+CGG 0.579732 7_2:+10388264 Msa1048660:three_prime_UTR
TTAGCGAGTGAGCCATGAAC+TGG 0.580769 7_2:-10384738 None:intergenic
CTACTCTATAAACAATCTGA+TGG 0.585680 7_2:-10383290 None:intergenic
GCTGGGATCATTGAAGAAGT+TGG 0.586508 7_2:+10384585 Msa1048660:five_prime_UTR
ATAAGGATTAAATTGTTCCA+AGG 0.587103 7_2:-10383186 None:intergenic
TTGTCAGACTCTGAATCCAC+AGG 0.589255 7_2:+10387174 Msa1048660:CDS
AGAGTCTGATTTCTAGAGAG+AGG 0.590019 7_2:-10383057 None:intergenic
TTATTGGTCATGAGTGTGCT+GGG 0.592332 7_2:+10384568 Msa1048660:five_prime_UTR
CCTGGTCATGAAGTCTACTT+CGG 0.592347 7_2:+10386534 Msa1048660:five_prime_UTR
ATGCATCCTTGTGCTTGCCA+AGG 0.596619 7_2:-10388246 None:intergenic
TCCAAGTATAAAGGCACATG+AGG 0.597327 7_2:-10386365 None:intergenic
GTTCAGCTAGGAGGGAAAAG+AGG 0.597652 7_2:-10383235 None:intergenic
CATTGAGGAAATGGCTGCAA+TGG 0.598365 7_2:+10387129 Msa1048660:CDS
AAGTCTTCCTCAGAGTTGTA+CGG 0.603498 7_2:-10387942 None:intergenic
CTTAGTAGAAGCTTTCTGAA+AGG 0.604330 7_2:-10386318 None:intergenic
TGGGGTGGAAGAAGGAGGGA+AGG 0.605825 7_2:-10383105 None:intergenic
CTATGAAGATTGGTTACCCG+AGG 0.607456 7_2:+10387279 Msa1048660:three_prime_UTR
GCGAGTGAGCCATGAACTGG+TGG 0.607485 7_2:-10384735 None:intergenic
TGAGGAAATGGCTGCAATGG+TGG 0.607777 7_2:+10387132 Msa1048660:CDS
TGTGGTTGAGTTCAGCTAGG+AGG 0.607921 7_2:-10383244 None:intergenic
TTGGCAAGGAAACTGGTCGC+AGG 0.608254 7_2:+10388185 Msa1048660:three_prime_UTR
ATGATTAGAAGTAAGAAACA+AGG 0.611284 7_2:+10383348 Msa1048660:five_prime_UTR
CTTGTGCTTGCCAAGGAGGG+AGG 0.613362 7_2:-10388239 None:intergenic
AAACTGTTATGAATAGATGA+GGG 0.613750 7_2:+10388665 Msa1048660:three_prime_UTR
CTAAGTTTGATGGATTGGGG+TGG 0.613755 7_2:-10383120 None:intergenic
AGAGTGTTTAGAATAAGTCA+TGG 0.614920 7_2:+10384222 Msa1048660:five_prime_UTR
TCAGATAAAGACTTTGGTGA+CGG 0.618240 7_2:+10384611 Msa1048660:five_prime_UTR
CAACGCCAACAACTGATCCC+AGG 0.618558 7_2:-10384654 None:intergenic
CAATGGCTATTGGTTCACAT+AGG 0.620419 7_2:+10387068 Msa1048660:CDS
TTGCCAAGGAGGGAGGATGA+TGG 0.623656 7_2:-10388232 None:intergenic
TGATCAGGTCTGTATTGGCA+AGG 0.624183 7_2:+10388171 Msa1048660:intron
AGATGGCAGAAACTATGAGC+TGG 0.628060 7_2:+10383546 Msa1048660:five_prime_UTR
TGGAAAATACTATGCAGAGG+AGG 0.628450 7_2:-10388824 None:intergenic
TAACATGCAGAATCAACAAG+AGG 0.635487 7_2:+10387498 Msa1048660:three_prime_UTR
GAGGGCTGAAGGGATAGCAA+TGG 0.639024 7_2:+10384168 Msa1048660:five_prime_UTR
CAGTGCCGCAAGTATAGGAG+TGG 0.639208 7_2:+10386977 Msa1048660:CDS
TCACATAGGTTGTCTCAGCA+AGG 0.643329 7_2:+10387082 Msa1048660:CDS
TCCCAGGCTCGATTGTCACA+CGG 0.649245 7_2:-10384638 None:intergenic
TTCGGCTCTACTGTAAAGCA+AGG 0.649355 7_2:+10386552 Msa1048660:five_prime_UTR
GTTCTGCTGGAAGAGTGGGT+AGG 0.649658 7_2:+10383394 Msa1048660:five_prime_UTR
ATTGCCAAACCAAATCACAA+TGG 0.658908 7_2:-10383434 None:intergenic
GAATTGTTTACCAAGAACCC+TGG 0.659160 7_2:+10386516 Msa1048660:intron
GCTAGGAGGGAAAAGAGGAA+AGG 0.662694 7_2:-10383230 None:intergenic
ATTTGGAAAATACTATGCAG+AGG 0.674639 7_2:-10388827 None:intergenic
TGTAAAGCAAGGAGAACTCG+AGG 0.676421 7_2:+10386563 Msa1048660:five_prime_UTR
GCAAATGCAGAAGTTACCGA+TGG 0.680742 7_2:-10386906 None:intergenic
GGGATCATTGAAGAAGTTGG+TGG 0.686510 7_2:+10384588 Msa1048660:five_prime_UTR
TCAATAAGTTCATCGACCGG+AGG 0.693726 7_2:-10388280 None:intergenic
CGAAGTAGACTTCATGACCA+GGG 0.696865 7_2:-10386533 None:intergenic
TTCTTGTCCGTACAACTCTG+AGG 0.699582 7_2:+10387935 Msa1048660:three_prime_UTR
ATGCACTCTATAGAACAATG+AGG 0.733511 7_2:+10388731 Msa1048660:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTCAATTATGTTATGA+TGG + chr7_2:10383989-10384008 Msa1048660:five_prime_UTR 15.0%
!! AATGTTCATGTTAAAATATT+CGG + chr7_2:10384070-10384089 Msa1048660:five_prime_UTR 15.0%
!!! TATTTTGTTTTCATGATTTT+AGG + chr7_2:10384291-10384310 Msa1048660:intron 15.0%
!!! ATTTTGTTTTCATGATTTTA+GGG + chr7_2:10384292-10384311 Msa1048660:intron 15.0%
!!! TCTTTTTGATGTTTAATTAA+AGG + chr7_2:10386413-10386432 Msa1048660:intron 15.0%
!! TTTGTAAAATTGACTAAAAT+TGG + chr7_2:10386485-10386504 Msa1048660:intron 15.0%
!!! ATTTGAAAATTTAACTTCAA+TGG + chr7_2:10388479-10388498 Msa1048660:intron 15.0%
!!! ATCAAGATTTTATGATTAAA+TGG + chr7_2:10388951-10388970 Msa1048660:three_prime_UTR 15.0%
!!! TGTTGATTTCCATTAAAATT+TGG - chr7_2:10383146-10383165 None:intergenic 20.0%
!! AATATTTATCCATTGTGATT+TGG + chr7_2:10383425-10383444 Msa1048660:five_prime_UTR 20.0%
!!! GGTATAATTTTAAGAAATGT+TGG + chr7_2:10383659-10383678 Msa1048660:five_prime_UTR 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG - chr7_2:10383763-10383782 None:intergenic 20.0%
!! AATTTATGTCTTCTTTCTAA+TGG - chr7_2:10383944-10383963 None:intergenic 20.0%
!!! GACATAAATTAACTTGAAAT+AGG + chr7_2:10383954-10383973 Msa1048660:five_prime_UTR 20.0%
!!! TAATGATTTTTTTCTCCAAA+TGG + chr7_2:10384392-10384411 Msa1048660:intron 20.0%
!!! AACTATACTTTGAGAATTTA+TGG - chr7_2:10384783-10384802 None:intergenic 20.0%
!! AAAAATCAATGCATTCATTT+GGG - chr7_2:10385070-10385089 None:intergenic 20.0%
!! AAAAAATCAATGCATTCATT+TGG - chr7_2:10385071-10385090 None:intergenic 20.0%
!!! TGTTTCTATATGTTTTTTGT+TGG + chr7_2:10385113-10385132 Msa1048660:intron 20.0%
!! ACATTATTACTATGATACAA+TGG - chr7_2:10385266-10385285 None:intergenic 20.0%
!!! TATTTTTGTCTACTTTACAA+AGG - chr7_2:10385434-10385453 None:intergenic 20.0%
!!! TACTAACAAAACTGAATTTT+TGG + chr7_2:10385713-10385732 Msa1048660:intron 20.0%
!! TACAAATGATATAACTAAAC+AGG - chr7_2:10385841-10385860 None:intergenic 20.0%
!! TTATTGAAAAATGACCAATT+TGG - chr7_2:10386656-10386675 None:intergenic 20.0%
!! GCTTAATATATCAAAAAAGT+TGG + chr7_2:10386763-10386782 Msa1048660:intron 20.0%
!! TTGAAAGAATATTACATACA+TGG - chr7_2:10388121-10388140 None:intergenic 20.0%
!! ATGTAATATTCTTTCAATCT+CGG + chr7_2:10388124-10388143 Msa1048660:intron 20.0%
!! ATTGTATGTATATATTACCA+GGG - chr7_2:10388333-10388352 None:intergenic 20.0%
!! AATTGTATGTATATATTACC+AGG - chr7_2:10388334-10388353 None:intergenic 20.0%
!! TTTGTATTATCAATTTACTC+TGG + chr7_2:10388352-10388371 Msa1048660:intron 20.0%
!! ATATTAACTGAAACCATTAA+AGG - chr7_2:10388880-10388899 None:intergenic 20.0%
! TAAAATTTGGCTAAGTTTGA+TGG - chr7_2:10383133-10383152 None:intergenic 25.0%
!! CAAACTTAGCCAAATTTTAA+TGG + chr7_2:10383134-10383153 Msa1048660:five_prime_UTR 25.0%
! ATAAGGATTAAATTGTTCCA+AGG - chr7_2:10383189-10383208 None:intergenic 25.0%
!!! AAGAATTTTAATCCTGCATA+AGG - chr7_2:10383206-10383225 None:intergenic 25.0%
! ATGATTAGAAGTAAGAAACA+AGG + chr7_2:10383348-10383367 Msa1048660:five_prime_UTR 25.0%
! AACAAGAAATTTGCAGAAAA+AGG + chr7_2:10383460-10383479 Msa1048660:five_prime_UTR 25.0%
! AAAAAGGATTACTGAAAGTT+TGG + chr7_2:10383476-10383495 Msa1048660:five_prime_UTR 25.0%
! AAAAGGATTACTGAAAGTTT+GGG + chr7_2:10383477-10383496 Msa1048660:five_prime_UTR 25.0%
! TGAATTTGATTAGATAGAGA+AGG + chr7_2:10383619-10383638 Msa1048660:five_prime_UTR 25.0%
! GAATTTGATTAGATAGAGAA+GGG + chr7_2:10383620-10383639 Msa1048660:five_prime_UTR 25.0%
! GACAAAATTTAACACGAAAT+AGG + chr7_2:10383773-10383792 Msa1048660:five_prime_UTR 25.0%
!! AATTAACTTGAAATAGGCTT+TGG + chr7_2:10383960-10383979 Msa1048660:five_prime_UTR 25.0%
! ATAAAAAATCTGCTCTATTG+TGG + chr7_2:10384043-10384062 Msa1048660:five_prime_UTR 25.0%
! ATCAAAATTGCAGATTATGT+AGG - chr7_2:10384421-10384440 None:intergenic 25.0%
!!! TAATCTGCAATTTTGATTCA+AGG + chr7_2:10384424-10384443 Msa1048660:intron 25.0%
!!! AATCTGCAATTTTGATTCAA+GGG + chr7_2:10384425-10384444 Msa1048660:intron 25.0%
! TATAGAACAAAGATAAATGC+AGG - chr7_2:10384457-10384476 None:intergenic 25.0%
!! ATGTGCAGATTTTATAGTTA+AGG + chr7_2:10384536-10384555 Msa1048660:five_prime_UTR 25.0%
!! TTTTATAGTTAAGGAACCAA+TGG + chr7_2:10384545-10384564 Msa1048660:five_prime_UTR 25.0%
! TAGCAAAAAACTTCATATCA+AGG - chr7_2:10384713-10384732 None:intergenic 25.0%
!! TAGATTTTTGTACTTCGAAT+TGG - chr7_2:10384817-10384836 None:intergenic 25.0%
! CGGTAGAACATAAAAAAATT+AGG + chr7_2:10385020-10385039 Msa1048660:intron 25.0%
! AAAATCAATGCATTCATTTG+GGG - chr7_2:10385069-10385088 None:intergenic 25.0%
! ATTGCTCAAAGTATAATATG+TGG + chr7_2:10385151-10385170 Msa1048660:intron 25.0%
! TTGCTCAAAGTATAATATGT+GGG + chr7_2:10385152-10385171 Msa1048660:intron 25.0%
! GAAATGCATTTGATTGAATT+TGG + chr7_2:10385196-10385215 Msa1048660:intron 25.0%
! GTATGATCAATTTACTAACA+GGG - chr7_2:10385374-10385393 None:intergenic 25.0%
! TGTATGATCAATTTACTAAC+AGG - chr7_2:10385375-10385394 None:intergenic 25.0%
! TTTAGGAAAACTGTACAAAT+TGG + chr7_2:10385563-10385582 Msa1048660:intron 25.0%
!!! ACAAAACTGAATTTTTGGAT+TGG + chr7_2:10385718-10385737 Msa1048660:intron 25.0%
! GCTTAGTTACTAAACATAAA+AGG - chr7_2:10385952-10385971 None:intergenic 25.0%
! ATTGCATATTACTTACCATA+AGG + chr7_2:10386019-10386038 Msa1048660:intron 25.0%
! TTGCATATTACTTACCATAA+GGG + chr7_2:10386020-10386039 Msa1048660:intron 25.0%
! AACAATATGCATAATGAATC+TGG - chr7_2:10386121-10386140 None:intergenic 25.0%
! AATGTTAATTTCTTGTCAAG+AGG - chr7_2:10386183-10386202 None:intergenic 25.0%
! ACACTAAGTTACAGTATAAT+TGG + chr7_2:10386240-10386259 Msa1048660:intron 25.0%
! ACAAACACAAAAATAATACC+TGG - chr7_2:10386470-10386489 None:intergenic 25.0%
!!! AAAAAATCTTCTTTTTGGCA+AGG - chr7_2:10387239-10387258 None:intergenic 25.0%
! CTGTAGATGATTTAAATGTT+TGG + chr7_2:10387361-10387380 Msa1048660:intron 25.0%
!! TGTTTGGAACAATATATCTA+AGG + chr7_2:10387377-10387396 Msa1048660:intron 25.0%
!! ATGCAGAATTTTATTGTGTT+TGG + chr7_2:10387419-10387438 Msa1048660:intron 25.0%
! TTGTACAAAAGTTGCTAAAA+AGG + chr7_2:10387560-10387579 Msa1048660:intron 25.0%
!! AATTTTCGTGAAATGACAAT+TGG - chr7_2:10387701-10387720 None:intergenic 25.0%
! TCATTTCACGAAAATTCAAT+AGG + chr7_2:10387705-10387724 Msa1048660:intron 25.0%
! ACGAAAATTCAATAGGTAAT+TGG + chr7_2:10387712-10387731 Msa1048660:intron 25.0%
! TCTTACTAACGACTTAAAAA+AGG - chr7_2:10387762-10387781 None:intergenic 25.0%
!! TCACATTTTTCATGTTATTG+TGG + chr7_2:10387797-10387816 Msa1048660:intron 25.0%
!! ATGAGTTCTTTTGAATTGTA+GGG + chr7_2:10387863-10387882 Msa1048660:intron 25.0%
! GTAAATGTTAAGATGATTAC+CGG + chr7_2:10388148-10388167 Msa1048660:intron 25.0%
! CATAAAAGAAGAAATGTAGT+TGG + chr7_2:10388378-10388397 Msa1048660:intron 25.0%
! CAAAATAAACAACAGAAATG+AGG - chr7_2:10388550-10388569 None:intergenic 25.0%
!!! TTTATTTTGACTTGAATGTG+TGG + chr7_2:10388561-10388580 Msa1048660:intron 25.0%
! CAACAGAAAAAATCATGTAA+TGG - chr7_2:10388637-10388656 None:intergenic 25.0%
! AAACTGTTATGAATAGATGA+GGG + chr7_2:10388665-10388684 Msa1048660:three_prime_UTR 25.0%
!!! TATTTTGTTGGTTCCTTTAA+TGG + chr7_2:10388864-10388883 Msa1048660:three_prime_UTR 25.0%
GAACAATTTAATCCTTATGC+AGG + chr7_2:10383191-10383210 Msa1048660:five_prime_UTR 30.0%
CTACTCTATAAACAATCTGA+TGG - chr7_2:10383293-10383312 None:intergenic 30.0%
!! TTATCCATTGTGATTTGGTT+TGG + chr7_2:10383430-10383449 Msa1048660:five_prime_UTR 30.0%
! AGAAATTGAAGTTTTGCAGA+TGG + chr7_2:10383529-10383548 Msa1048660:five_prime_UTR 30.0%
TAAGCTTAATCTGATTCAGA+AGG + chr7_2:10383572-10383591 Msa1048660:five_prime_UTR 30.0%
TAATCTGATTCAGAAGGTTA+TGG + chr7_2:10383578-10383597 Msa1048660:five_prime_UTR 30.0%
TTGAGTGAAAATTGAACCAT+TGG + chr7_2:10383744-10383763 Msa1048660:five_prime_UTR 30.0%
!! AAAATCTGAAGTGTTGTTGT+TGG + chr7_2:10383866-10383885 Msa1048660:five_prime_UTR 30.0%
GTATAAGTCACATTTCAAAC+TGG - chr7_2:10383922-10383941 None:intergenic 30.0%
! AGAGTGTTTAGAATAAGTCA+TGG + chr7_2:10384222-10384241 Msa1048660:five_prime_UTR 30.0%
!!! TTTCGTTTTTTGTTGTTGGT+TGG + chr7_2:10384259-10384278 Msa1048660:intron 30.0%
AGATTATGTAGGAAACCATT+TGG - chr7_2:10384410-10384429 None:intergenic 30.0%
AATTTCAATGTTGCAAGTAG+TGG + chr7_2:10384845-10384864 Msa1048660:intron 30.0%
!!! ATTTTTTTATGTTCTACCGC+AGG - chr7_2:10385019-10385038 None:intergenic 30.0%
AAATCAATGCATTCATTTGG+GGG - chr7_2:10385068-10385087 None:intergenic 30.0%
GACAAAAATACCTACAGAAT+AGG + chr7_2:10385444-10385463 Msa1048660:intron 30.0%
! TTTTCCTAAAGAACATGTAC+AGG - chr7_2:10385553-10385572 None:intergenic 30.0%
GAATGTTCGTTTAGTCAATT+CGG + chr7_2:10385645-10385664 Msa1048660:intron 30.0%
! CCATTTTATAACTGCATTCA+TGG - chr7_2:10386287-10386306 None:intergenic 30.0%
CCATGAATGCAGTTATAAAA+TGG + chr7_2:10386284-10386303 Msa1048660:intron 30.0%
TGCACATATTCCAAGTATAA+AGG - chr7_2:10386377-10386396 None:intergenic 30.0%
ATGCTGATCACTACTAAAAA+TGG + chr7_2:10386701-10386720 Msa1048660:intron 30.0%
! AAACTGCAATTTTATGTCCA+TGG + chr7_2:10386863-10386882 Msa1048660:intron 30.0%
ATTGTATCTGACAAAACTGT+TGG - chr7_2:10387052-10387071 None:intergenic 30.0%
!! AACAGTTTTGTCAGATACAA+TGG + chr7_2:10387051-10387070 Msa1048660:CDS 30.0%
AACAACAGTTATACTAAGGT+TGG - chr7_2:10387202-10387221 None:intergenic 30.0%
AACCTTAGTATAACTGTTGT+TGG + chr7_2:10387201-10387220 Msa1048660:exon 30.0%
! GCTGGAAAAAATCTTCTTTT+TGG - chr7_2:10387244-10387263 None:intergenic 30.0%
! TTGCTCTTTTCTATGAAGAT+TGG + chr7_2:10387269-10387288 Msa1048660:three_prime_UTR 30.0%
TTATTGTGTTTGGATATGCT+CGG + chr7_2:10387429-10387448 Msa1048660:three_prime_UTR 30.0%
! TAACTCTTCATCAGTCATTT+TGG - chr7_2:10387456-10387475 None:intergenic 30.0%
AAATGACTGATGAAGAGTTA+AGG + chr7_2:10387456-10387475 Msa1048660:three_prime_UTR 30.0%
GAACTATTCATGATAGTAGA+GGG + chr7_2:10387592-10387611 Msa1048660:intron 30.0%
AAATGACAATTGGCAAATAG+GGG - chr7_2:10387691-10387710 None:intergenic 30.0%
GAAATGACAATTGGCAAATA+GGG - chr7_2:10387692-10387711 None:intergenic 30.0%
TGAAATGACAATTGGCAAAT+AGG - chr7_2:10387693-10387712 None:intergenic 30.0%
AAAAGAACTCATCAGTATAG+GGG - chr7_2:10387855-10387874 None:intergenic 30.0%
CAAAAGAACTCATCAGTATA+GGG - chr7_2:10387856-10387875 None:intergenic 30.0%
TCAAAAGAACTCATCAGTAT+AGG - chr7_2:10387857-10387876 None:intergenic 30.0%
! GATGAGTTCTTTTGAATTGT+AGG + chr7_2:10387862-10387881 Msa1048660:intron 30.0%
! ATATCTTTGATGGCATCATT+CGG + chr7_2:10388587-10388606 Msa1048660:intron 30.0%
AAAAATCATGTAATGGTCTC+AGG - chr7_2:10388630-10388649 None:intergenic 30.0%
GAAACTGTTATGAATAGATG+AGG + chr7_2:10388664-10388683 Msa1048660:three_prime_UTR 30.0%
ATGAATAGATGAGGGAAATA+TGG + chr7_2:10388673-10388692 Msa1048660:three_prime_UTR 30.0%
ACTACAGAACTCATGTTTAA+AGG + chr7_2:10388754-10388773 Msa1048660:three_prime_UTR 30.0%
CTACAGAACTCATGTTTAAA+GGG + chr7_2:10388755-10388774 Msa1048660:three_prime_UTR 30.0%
ATTTGGAAAATACTATGCAG+AGG - chr7_2:10388830-10388849 None:intergenic 30.0%
! TGCATAGTATTTTCCAAATG+AGG + chr7_2:10388831-10388850 Msa1048660:three_prime_UTR 30.0%
!! TTGGCTAAGTTTGATGGATT+GGG - chr7_2:10383127-10383146 None:intergenic 35.0%
! TTTGGCTAAGTTTGATGGAT+TGG - chr7_2:10383128-10383147 None:intergenic 35.0%
AAGCTTCAAATCTTGATCCT+TGG + chr7_2:10383169-10383188 Msa1048660:five_prime_UTR 35.0%
GTTCAAAACTTGTGAGTTTG+TGG - chr7_2:10383265-10383284 None:intergenic 35.0%
GTAAGAAACAAGGAAGAATG+AGG + chr7_2:10383358-10383377 Msa1048660:five_prime_UTR 35.0%
ATTGCCAAACCAAATCACAA+TGG - chr7_2:10383437-10383456 None:intergenic 35.0%
!! ATAGAGAAGGGTTTGTTAGT+TGG + chr7_2:10383632-10383651 Msa1048660:five_prime_UTR 35.0%
!! AAGGGTTTGTTAGTTGGTTA+TGG + chr7_2:10383638-10383657 Msa1048660:five_prime_UTR 35.0%
TAGACCTACTGTCAGAAAAA+CGG + chr7_2:10383694-10383713 Msa1048660:five_prime_UTR 35.0%
ACGGTCATAAATACTTGTGT+TGG + chr7_2:10383713-10383732 Msa1048660:five_prime_UTR 35.0%
AAAATCTGCTCTATTGTGGT+TGG + chr7_2:10384047-10384066 Msa1048660:five_prime_UTR 35.0%
AGTCCTTGTAATTTCAATCC+AGG - chr7_2:10384103-10384122 None:intergenic 35.0%
!!! GCTCTTTCGTTTTTTGTTGT+TGG + chr7_2:10384255-10384274 Msa1048660:intron 35.0%
GTTAAGGAACCAATGGTTAT+TGG + chr7_2:10384552-10384571 Msa1048660:five_prime_UTR 35.0%
TCAGATAAAGACTTTGGTGA+CGG + chr7_2:10384611-10384630 Msa1048660:five_prime_UTR 35.0%
CGTTGTCATAATTGCAAACT+TGG + chr7_2:10384672-10384691 Msa1048660:five_prime_UTR 35.0%
GCATTTGATTGAATTTGGCA+AGG + chr7_2:10385201-10385220 Msa1048660:intron 35.0%
AAATTCTGCAATTTGCAGCT+TGG + chr7_2:10385345-10385364 Msa1048660:intron 35.0%
TGTACCTGTACATGTTCTTT+AGG + chr7_2:10385546-10385565 Msa1048660:intron 35.0%
TTGACTAAACGAACATTCCT+TGG - chr7_2:10385643-10385662 None:intergenic 35.0%
TGCTAATACTCTAACACAGA+TGG + chr7_2:10385779-10385798 Msa1048660:intron 35.0%
!!! CTCTAACACAGATGGTTTTT+TGG + chr7_2:10385787-10385806 Msa1048660:intron 35.0%
TGTTTAGTAACTAAGCTAGC+TGG + chr7_2:10385867-10385886 Msa1048660:intron 35.0%
TGTTTAGTAACTAAGCTAGC+TGG + chr7_2:10385867-10385886 Msa1048660:intron 35.0%
CTAAGCTAGCTGGTAATTAA+TGG + chr7_2:10385877-10385896 Msa1048660:intron 35.0%
TATTACTTACCATAAGGGAG+AGG + chr7_2:10386025-10386044 Msa1048660:intron 35.0%
! ACTTTTCTAATGGCATCTTC+AGG + chr7_2:10386049-10386068 Msa1048660:intron 35.0%
AGATTTAGTACATACCCAGT+TGG + chr7_2:10386214-10386233 Msa1048660:intron 35.0%
CTTAGTAGAAGCTTTCTGAA+AGG - chr7_2:10386321-10386340 None:intergenic 35.0%
CTTTCAGAAAGCTTCTACTA+AGG + chr7_2:10386319-10386338 Msa1048660:five_prime_UTR 35.0%
TTAACACATGATCATAGCCA+TGG - chr7_2:10386883-10386902 None:intergenic 35.0%
TGCATTTGCTCAATTGCTTT+GGG + chr7_2:10386920-10386939 Msa1048660:five_prime_UTR 35.0%
GAGTGGAATTGACAATCTAT+TGG + chr7_2:10386994-10387013 Msa1048660:CDS 35.0%
! AATCTATTGGTGCTTCTGAT+TGG + chr7_2:10387007-10387026 Msa1048660:CDS 35.0%
AAAACTGTTGGCATTGCAAT+AGG - chr7_2:10387040-10387059 None:intergenic 35.0%
TTGTCAGATACAATGGCTAT+TGG + chr7_2:10387058-10387077 Msa1048660:CDS 35.0%
AAAGAGAATGATAGCCATTG+AGG + chr7_2:10387114-10387133 Msa1048660:CDS 35.0%
AATGATAGCCATTGAGGAAA+TGG + chr7_2:10387120-10387139 Msa1048660:CDS 35.0%
CTCCAACAACAGTTATACTA+AGG - chr7_2:10387206-10387225 None:intergenic 35.0%
TACTATCACAATTCAGACCT+CGG - chr7_2:10387299-10387318 None:intergenic 35.0%
TGATTCTGCATGTTAAAGTC+TGG - chr7_2:10387493-10387512 None:intergenic 35.0%
TAACATGCAGAATCAACAAG+AGG + chr7_2:10387498-10387517 Msa1048660:three_prime_UTR 35.0%
CAACAAGAGGTAAGTGTTAT+AGG + chr7_2:10387511-10387530 Msa1048660:intron 35.0%
GTTATAGGAGCAATTCTCTT+TGG + chr7_2:10387526-10387545 Msa1048660:intron 35.0%
CGAACTATTCATGATAGTAG+AGG + chr7_2:10387591-10387610 Msa1048660:intron 35.0%
GTAGAGGGAAAAAAGATTTC+AGG + chr7_2:10387607-10387626 Msa1048660:intron 35.0%
AAGTCGTTAGTAAGACTCAT+CGG + chr7_2:10387767-10387786 Msa1048660:intron 35.0%
TAGGGGAAAAGTAAGAAAGA+AGG - chr7_2:10387838-10387857 None:intergenic 35.0%
GGCAAATTGTGCAGATAAAA+CGG + chr7_2:10387884-10387903 Msa1048660:three_prime_UTR 35.0%
TGAGGAAGACTTTCTAGATT+TGG + chr7_2:10387953-10387972 Msa1048660:three_prime_UTR 35.0%
TTCCAAGCTAAAAGAGAAAG+AGG + chr7_2:10387977-10387996 Msa1048660:three_prime_UTR 35.0%
!! TACCTCTTTCTCTTTTAGCT+TGG - chr7_2:10387982-10388001 None:intergenic 35.0%
TTCTCAATAAGTTCATCGAC+CGG - chr7_2:10388286-10388305 None:intergenic 35.0%
!! ATAACAATTCTAGCCTTGCT+TGG + chr7_2:10388402-10388421 Msa1048660:intron 35.0%
!! TAACAATTCTAGCCTTGCTT+GGG + chr7_2:10388403-10388422 Msa1048660:intron 35.0%
CTTATCTGGGTTATGAATCA+AGG - chr7_2:10388440-10388459 None:intergenic 35.0%
CTTGATTCATAACCCAGATA+AGG + chr7_2:10388438-10388457 Msa1048660:intron 35.0%
!! GCATGGCTCTAATAAGATAT+TGG + chr7_2:10388518-10388537 Msa1048660:intron 35.0%
TGTGTGGCTTATATCTTTGA+TGG + chr7_2:10388577-10388596 Msa1048660:intron 35.0%
!!! TGATTTTTTCTGTTGCAGAG+TGG + chr7_2:10388642-10388661 Msa1048660:intron 35.0%
ATGCACTCTATAGAACAATG+AGG + chr7_2:10388731-10388750 Msa1048660:three_prime_UTR 35.0%
! AGAGTCTGATTTCTAGAGAG+AGG - chr7_2:10383060-10383079 None:intergenic 40.0%
!! TGGCTAAGTTTGATGGATTG+GGG - chr7_2:10383126-10383145 None:intergenic 40.0%
AAACAAGGAAGAATGAGGCT+AGG + chr7_2:10383363-10383382 Msa1048660:five_prime_UTR 40.0%
AACAAGGAAGAATGAGGCTA+GGG + chr7_2:10383364-10383383 Msa1048660:five_prime_UTR 40.0%
! TTTGGGTCAATGCTGGATTT+TGG + chr7_2:10383494-10383513 Msa1048660:five_prime_UTR 40.0%
!! ATGACCGTTTTTCTGACAGT+AGG - chr7_2:10383701-10383720 None:intergenic 40.0%
AAAATATTCGGTTCACTGCC+TGG + chr7_2:10384082-10384101 Msa1048660:five_prime_UTR 40.0%
CTGCCTGGATTGAAATTACA+AGG + chr7_2:10384097-10384116 Msa1048660:five_prime_UTR 40.0%
! GAAGCATATGTCTGAAGCTA+TGG + chr7_2:10384123-10384142 Msa1048660:five_prime_UTR 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG + chr7_2:10384149-10384168 Msa1048660:five_prime_UTR 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG + chr7_2:10384150-10384169 Msa1048660:five_prime_UTR 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG + chr7_2:10384185-10384204 Msa1048660:five_prime_UTR 40.0%
AATAAGTCATGGTGAGTTCG+TGG + chr7_2:10384233-10384252 Msa1048660:intron 40.0%
CACTCATGACCAATAACCAT+TGG - chr7_2:10384564-10384583 None:intergenic 40.0%
TTATTGGTCATGAGTGTGCT+GGG + chr7_2:10384568-10384587 Msa1048660:five_prime_UTR 40.0%
TGGTGGTCAGATAAAGACTT+TGG + chr7_2:10384605-10384624 Msa1048660:five_prime_UTR 40.0%
! CAGATAAAGACTTTGGTGAC+GGG + chr7_2:10384612-10384631 Msa1048660:five_prime_UTR 40.0%
! AAAGCGCCATAACACAACTA+CGG - chr7_2:10384908-10384927 None:intergenic 40.0%
AATCCGAAACTAGATTCCTG+CGG + chr7_2:10385000-10385019 Msa1048660:intron 40.0%
GATTCTTGAGCCTATTCTGT+AGG - chr7_2:10385457-10385476 None:intergenic 40.0%
CATGTACAGGTACAGAAACA+GGG - chr7_2:10385540-10385559 None:intergenic 40.0%
ACATGTACAGGTACAGAAAC+AGG - chr7_2:10385541-10385560 None:intergenic 40.0%
TTGGCATTCTAAGCTTTCCA+AGG + chr7_2:10385623-10385642 Msa1048660:intron 40.0%
AGAAAAGTTCCTCTCCCTTA+TGG - chr7_2:10386037-10386056 None:intergenic 40.0%
! AGGGAGAGGAACTTTTCTAA+TGG + chr7_2:10386039-10386058 Msa1048660:intron 40.0%
CATTATGCATATTGTTGCGC+AGG + chr7_2:10386125-10386144 Msa1048660:intron 40.0%
TAACTTAGTGTGCACCAACT+GGG - chr7_2:10386231-10386250 None:intergenic 40.0%
TCCTCATGTGCCTTTATACT+TGG + chr7_2:10386364-10386383 Msa1048660:five_prime_UTR 40.0%
! TCCAAGTATAAAGGCACATG+AGG - chr7_2:10386368-10386387 None:intergenic 40.0%
GAATTGTTTACCAAGAACCC+TGG + chr7_2:10386516-10386535 Msa1048660:intron 40.0%
TGTGCACATCTTCTTTGGTA+AGG + chr7_2:10386605-10386624 Msa1048660:five_prime_UTR 40.0%
GTCGACAACACTAACCAAAT+TGG + chr7_2:10386639-10386658 Msa1048660:five_prime_UTR 40.0%
GATCATGTGTTAACAGCCAT+CGG + chr7_2:10386890-10386909 Msa1048660:intron 40.0%
CTGCATTTGCTCAATTGCTT+TGG + chr7_2:10386919-10386938 Msa1048660:five_prime_UTR 40.0%
CAATTCCACTCCTATACTTG+CGG - chr7_2:10386985-10387004 None:intergenic 40.0%
!! CAATGGCTATTGGTTCACAT+AGG + chr7_2:10387068-10387087 Msa1048660:CDS 40.0%
TATACTAAGGTTGGATCCTG+TGG - chr7_2:10387193-10387212 None:intergenic 40.0%
! ATAACTGTTGTTGGAGCATC+TGG + chr7_2:10387210-10387229 Msa1048660:exon 40.0%
! TAGAAAAGAGCAAAGAGTGC+TGG - chr7_2:10387262-10387281 None:intergenic 40.0%
ACTATCACAATTCAGACCTC+GGG - chr7_2:10387298-10387317 None:intergenic 40.0%
!!! GATTTTCAAGTGCATGTGGA+TGG - chr7_2:10387669-10387688 None:intergenic 40.0%
AAGTCTTCCTCAGAGTTGTA+CGG - chr7_2:10387945-10387964 None:intergenic 40.0%
AGAGAAAGAGGTAATGCTTG+AGG + chr7_2:10387989-10388008 Msa1048660:intron 40.0%
TAAGATGATTACCGGTGATC+AGG + chr7_2:10388156-10388175 Msa1048660:intron 40.0%
GGTCGATGAACTTATTGAGA+AGG + chr7_2:10388285-10388304 Msa1048660:three_prime_UTR 40.0%
GAACTTATTGAGAAGGCTGA+TGG + chr7_2:10388292-10388311 Msa1048660:three_prime_UTR 40.0%
TCATAACCCAGATAAGGTCA+AGG + chr7_2:10388444-10388463 Msa1048660:intron 40.0%
CATTTGCCTTGACCTTATCT+GGG - chr7_2:10388453-10388472 None:intergenic 40.0%
GCACTCAATTCATAGAAGCA+TGG + chr7_2:10388501-10388520 Msa1048660:intron 40.0%
TGGAAAATACTATGCAGAGG+AGG - chr7_2:10388827-10388846 None:intergenic 40.0%
ATAGTTCTTGACGCCTCATT+TGG - chr7_2:10388847-10388866 None:intergenic 40.0%
! GGCGTCAAGAACTATTTTGT+TGG + chr7_2:10388852-10388871 Msa1048660:three_prime_UTR 40.0%
GCGTGAGATGTTTAGAGAGA+AGG - chr7_2:10383086-10383105 None:intergenic 45.0%
!! CTAAGTTTGATGGATTGGGG+TGG - chr7_2:10383123-10383142 None:intergenic 45.0%
GTTTGTGGTTGAGTTCAGCT+AGG - chr7_2:10383250-10383269 None:intergenic 45.0%
CTGAAAGTTTGGGTCAATGC+TGG + chr7_2:10383487-10383506 Msa1048660:five_prime_UTR 45.0%
AGATGGCAGAAACTATGAGC+TGG + chr7_2:10383546-10383565 Msa1048660:five_prime_UTR 45.0%
GTTATTGGTCATGAGTGTGC+TGG + chr7_2:10384567-10384586 Msa1048660:five_prime_UTR 45.0%
GCTGGGATCATTGAAGAAGT+TGG + chr7_2:10384585-10384604 Msa1048660:five_prime_UTR 45.0%
GGGATCATTGAAGAAGTTGG+TGG + chr7_2:10384588-10384607 Msa1048660:five_prime_UTR 45.0%
TTTGCTACTCCACCAGTTCA+TGG + chr7_2:10384726-10384745 Msa1048660:five_prime_UTR 45.0%
TTGCAGCCGTAGTTGTGTTA+TGG + chr7_2:10384899-10384918 Msa1048660:intron 45.0%
GTTATGGCGCTTTAGTGTAG+TGG + chr7_2:10384915-10384934 Msa1048660:intron 45.0%
! CTACCGCAGGAATCTAGTTT+CGG - chr7_2:10385006-10385025 None:intergenic 45.0%
AGAGGCTCACACATGACATT+TGG - chr7_2:10386165-10386184 None:intergenic 45.0%
GTAACTTAGTGTGCACCAAC+TGG - chr7_2:10386232-10386251 None:intergenic 45.0%
GGAATATGTGCACAATCGCT+AGG + chr7_2:10386385-10386404 Msa1048660:five_prime_UTR 45.0%
CGAACATGATAAGAATCGCC+AGG + chr7_2:10386449-10386468 Msa1048660:intron 45.0%
CGAAGTAGACTTCATGACCA+GGG - chr7_2:10386536-10386555 None:intergenic 45.0%
CCTGGTCATGAAGTCTACTT+CGG + chr7_2:10386534-10386553 Msa1048660:five_prime_UTR 45.0%
TTCGGCTCTACTGTAAAGCA+AGG + chr7_2:10386552-10386571 Msa1048660:five_prime_UTR 45.0%
TGTAAAGCAAGGAGAACTCG+AGG + chr7_2:10386563-10386582 Msa1048660:five_prime_UTR 45.0%
GAGGCGATTGTAATTGCTAC+TGG + chr7_2:10386582-10386601 Msa1048660:five_prime_UTR 45.0%
ACTGGTGTGCACATCTTCTT+TGG + chr7_2:10386600-10386619 Msa1048660:five_prime_UTR 45.0%
CTTTGGTAAGGCTGCTCATT+TGG + chr7_2:10386617-10386636 Msa1048660:five_prime_UTR 45.0%
GCAAATGCAGAAGTTACCGA+TGG - chr7_2:10386909-10386928 None:intergenic 45.0%
! CTATACTTGCGGCACTGAAT+AGG - chr7_2:10386974-10386993 None:intergenic 45.0%
CTATTCAGTGCCGCAAGTAT+AGG + chr7_2:10386972-10386991 Msa1048660:CDS 45.0%
! CTATTGGTGCTTCTGATTGG+AGG + chr7_2:10387010-10387029 Msa1048660:CDS 45.0%
TCACATAGGTTGTCTCAGCA+AGG + chr7_2:10387082-10387101 Msa1048660:CDS 45.0%
CATTGCAGCCATTTCCTCAA+TGG - chr7_2:10387131-10387150 None:intergenic 45.0%
CATTGAGGAAATGGCTGCAA+TGG + chr7_2:10387129-10387148 Msa1048660:CDS 45.0%
TTGTCAGACTCTGAATCCAC+AGG + chr7_2:10387174-10387193 Msa1048660:CDS 45.0%
! CTATGAAGATTGGTTACCCG+AGG + chr7_2:10387279-10387298 Msa1048660:three_prime_UTR 45.0%
!!! AGGGGATTTTCAAGTGCATG+TGG - chr7_2:10387673-10387692 None:intergenic 45.0%
TTCTTGTCCGTACAACTCTG+AGG + chr7_2:10387935-10387954 Msa1048660:three_prime_UTR 45.0%
! TGATCAGGTCTGTATTGGCA+AGG + chr7_2:10388171-10388190 Msa1048660:intron 45.0%
! GTCTGTATTGGCAAGGAAAC+TGG + chr7_2:10388178-10388197 Msa1048660:three_prime_UTR 45.0%
TCAATAAGTTCATCGACCGG+AGG - chr7_2:10388283-10388302 None:intergenic 45.0%
!! GAGAAGGCTGATGGATTTGT+TGG + chr7_2:10388301-10388320 Msa1048660:three_prime_UTR 45.0%
GACAAACTATTGCCCAAGCA+AGG - chr7_2:10388418-10388437 None:intergenic 45.0%
GCATTTGCCTTGACCTTATC+TGG - chr7_2:10388454-10388473 None:intergenic 45.0%
! GAAATATGGCGTTGAGCAGT+AGG + chr7_2:10388687-10388706 Msa1048660:three_prime_UTR 45.0%
!!! TATAAATATAATTTTAGTTT+TGG - chr7_2:10385600-10385619 None:intergenic 5.0%
!! TAAAATTATATTTATAATCT+TGG + chr7_2:10385604-10385623 Msa1048660:intron 5.0%
!! TGATGGATTGGGGTGGAAGA+AGG - chr7_2:10383116-10383135 None:intergenic 50.0%
GCTAGGAGGGAAAAGAGGAA+AGG - chr7_2:10383233-10383252 None:intergenic 50.0%
GTTCAGCTAGGAGGGAAAAG+AGG - chr7_2:10383238-10383257 None:intergenic 50.0%
GTGGTTGAGTTCAGCTAGGA+GGG - chr7_2:10383246-10383265 None:intergenic 50.0%
TGTGGTTGAGTTCAGCTAGG+AGG - chr7_2:10383247-10383266 None:intergenic 50.0%
GGAAGAATGAGGCTAGGGTT+TGG + chr7_2:10383369-10383388 Msa1048660:five_prime_UTR 50.0%
! CTAGGGTTTGGTTGTTCTGC+TGG + chr7_2:10383381-10383400 Msa1048660:five_prime_UTR 50.0%
TGGTTGTTCTGCTGGAAGAG+TGG + chr7_2:10383389-10383408 Msa1048660:five_prime_UTR 50.0%
GGTTGTTCTGCTGGAAGAGT+GGG + chr7_2:10383390-10383409 Msa1048660:five_prime_UTR 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG + chr7_2:10384157-10384176 Msa1048660:five_prime_UTR 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG + chr7_2:10384158-10384177 Msa1048660:five_prime_UTR 50.0%
TTAGCGAGTGAGCCATGAAC+TGG - chr7_2:10384741-10384760 None:intergenic 50.0%
TCATGGCTCACTCGCTAATC+AGG + chr7_2:10384743-10384762 Msa1048660:five_prime_UTR 50.0%
GACTTCATGACCAGGGTTCT+TGG - chr7_2:10386529-10386548 None:intergenic 50.0%
CCGAAGTAGACTTCATGACC+AGG - chr7_2:10386537-10386556 None:intergenic 50.0%
TGAGGAAATGGCTGCAATGG+TGG + chr7_2:10387132-10387151 Msa1048660:CDS 50.0%
ACCGGTGATCAGGTCTGTAT+TGG + chr7_2:10388166-10388185 Msa1048660:intron 50.0%
GCCAATACAGACCTGATCAC+CGG - chr7_2:10388170-10388189 None:intergenic 50.0%
TATCCATCATCCTCCCTCCT+TGG + chr7_2:10388229-10388248 Msa1048660:three_prime_UTR 50.0%
ATCCTTGTGCTTGCCAAGGA+GGG - chr7_2:10388245-10388264 None:intergenic 50.0%
ATGCATCCTTGTGCTTGCCA+AGG - chr7_2:10388249-10388268 None:intergenic 50.0%
!! TGCATCGATTGCTTCACCTC+CGG + chr7_2:10388264-10388283 Msa1048660:three_prime_UTR 50.0%
!! GGATTTGTTGGTGTCTTCCC+TGG + chr7_2:10388313-10388332 Msa1048660:three_prime_UTR 50.0%
GGATTGGGGTGGAAGAAGGA+GGG - chr7_2:10383112-10383131 None:intergenic 55.0%
! TGGATTGGGGTGGAAGAAGG+AGG - chr7_2:10383113-10383132 None:intergenic 55.0%
GTTCTGCTGGAAGAGTGGGT+AGG + chr7_2:10383394-10383413 Msa1048660:five_prime_UTR 55.0%
GAGGGCTGAAGGGATAGCAA+TGG + chr7_2:10384168-10384187 Msa1048660:five_prime_UTR 55.0%
ACCGTGTGACAATCGAGCCT+GGG + chr7_2:10384637-10384656 Msa1048660:five_prime_UTR 55.0%
TCCCAGGCTCGATTGTCACA+CGG - chr7_2:10384641-10384660 None:intergenic 55.0%
TCGAGCCTGGGATCAGTTGT+TGG + chr7_2:10384649-10384668 Msa1048660:five_prime_UTR 55.0%
CAACGCCAACAACTGATCCC+AGG - chr7_2:10384657-10384676 None:intergenic 55.0%
CAGTGCCGCAAGTATAGGAG+TGG + chr7_2:10386977-10386996 Msa1048660:CDS 55.0%
TTGGCAAGGAAACTGGTCGC+AGG + chr7_2:10388185-10388204 Msa1048660:three_prime_UTR 55.0%
AAGGAAACTGGTCGCAGGCT+CGG + chr7_2:10388190-10388209 Msa1048660:three_prime_UTR 55.0%
TTGCCAAGGAGGGAGGATGA+TGG - chr7_2:10388235-10388254 None:intergenic 55.0%
CATCCTTGTGCTTGCCAAGG+AGG - chr7_2:10388246-10388265 None:intergenic 55.0%
! GGCGTTGAGCAGTAGGATAC+TGG + chr7_2:10388694-10388713 Msa1048660:three_prime_UTR 55.0%
TGGGGTGGAAGAAGGAGGGA+AGG - chr7_2:10383108-10383127 None:intergenic 60.0%
GACCGTGTGACAATCGAGCC+TGG + chr7_2:10384636-10384655 Msa1048660:five_prime_UTR 60.0%
GCGAGTGAGCCATGAACTGG+TGG - chr7_2:10384738-10384757 None:intergenic 60.0%
GGCTGCAATGGTGGCTGCAA+TGG + chr7_2:10387141-10387160 Msa1048660:CDS 60.0%
CTTGTGCTTGCCAAGGAGGG+AGG - chr7_2:10388242-10388261 None:intergenic 60.0%
CTCCCTCCTTGGCAAGCACA+AGG + chr7_2:10388240-10388259 Msa1048660:three_prime_UTR 60.0%
AACTGGTCGCAGGCTCGGCA+TGG + chr7_2:10388195-10388214 Msa1048660:three_prime_UTR 65.0%
ACTGGTCGCAGGCTCGGCAT+GGG + chr7_2:10388196-10388215 Msa1048660:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 10383043 10388976 10383043 ID=Msa1048660;Name=Msa1048660
chr7_2 mRNA 10383043 10388976 10383043 ID=Msa1048660-mRNA-1;Parent=Msa1048660;Name=Msa1048660-mRNA-1;_AED=0.17;_eAED=0.17;_QI=1733|1|1|1|0.12|0.33|9|771|89
chr7_2 exon 10383043 10384243 10383043 ID=Msa1048660-mRNA-1:exon:2725;Parent=Msa1048660-mRNA-1
chr7_2 exon 10384528 10384764 10384528 ID=Msa1048660-mRNA-1:exon:2726;Parent=Msa1048660-mRNA-1
chr7_2 exon 10386296 10386406 10386296 ID=Msa1048660-mRNA-1:exon:2727;Parent=Msa1048660-mRNA-1
chr7_2 exon 10386531 10386676 10386531 ID=Msa1048660-mRNA-1:exon:2728;Parent=Msa1048660-mRNA-1
chr7_2 exon 10386906 10387300 10386906 ID=Msa1048660-mRNA-1:exon:2729;Parent=Msa1048660-mRNA-1
chr7_2 exon 10387425 10387519 10387425 ID=Msa1048660-mRNA-1:exon:2730;Parent=Msa1048660-mRNA-1
chr7_2 exon 10387884 10387998 10387884 ID=Msa1048660-mRNA-1:exon:2731;Parent=Msa1048660-mRNA-1
chr7_2 exon 10388178 10388334 10388178 ID=Msa1048660-mRNA-1:exon:2732;Parent=Msa1048660-mRNA-1
chr7_2 exon 10388660 10388976 10388660 ID=Msa1048660-mRNA-1:exon:2733;Parent=Msa1048660-mRNA-1
chr7_2 five_prime_UTR 10383043 10384243 10383043 ID=Msa1048660-mRNA-1:five_prime_utr;Parent=Msa1048660-mRNA-1
chr7_2 five_prime_UTR 10384528 10384764 10384528 ID=Msa1048660-mRNA-1:five_prime_utr;Parent=Msa1048660-mRNA-1
chr7_2 five_prime_UTR 10386296 10386406 10386296 ID=Msa1048660-mRNA-1:five_prime_utr;Parent=Msa1048660-mRNA-1
chr7_2 five_prime_UTR 10386531 10386676 10386531 ID=Msa1048660-mRNA-1:five_prime_utr;Parent=Msa1048660-mRNA-1
chr7_2 five_prime_UTR 10386906 10386943 10386906 ID=Msa1048660-mRNA-1:five_prime_utr;Parent=Msa1048660-mRNA-1
chr7_2 CDS 10386944 10387213 10386944 ID=Msa1048660-mRNA-1:cds;Parent=Msa1048660-mRNA-1
chr7_2 three_prime_UTR 10387214 10387300 10387214 ID=Msa1048660-mRNA-1:three_prime_utr;Parent=Msa1048660-mRNA-1
chr7_2 three_prime_UTR 10387425 10387519 10387425 ID=Msa1048660-mRNA-1:three_prime_utr;Parent=Msa1048660-mRNA-1
chr7_2 three_prime_UTR 10387884 10387998 10387884 ID=Msa1048660-mRNA-1:three_prime_utr;Parent=Msa1048660-mRNA-1
chr7_2 three_prime_UTR 10388178 10388334 10388178 ID=Msa1048660-mRNA-1:three_prime_utr;Parent=Msa1048660-mRNA-1
chr7_2 three_prime_UTR 10388660 10388976 10388660 ID=Msa1048660-mRNA-1:three_prime_utr;Parent=Msa1048660-mRNA-1
Gene Sequence

>Msa1048660

ATGATCATCGAGATTGTTGTCATGTATCCTATTCAGTGCCGCAAGTATAGGAGTGGAATTGACAATCTATTGGTGCTTCTGATTGGAGGAATTCCTATTGCAATGCCAACAGTTTTGTCAGATACAATGGCTATTGGTTCACATAGGTTGTCTCAGCAAGGTGCTATCACAAAGAGAATGATAGCCATTGAGGAAATGGCTGCAATGGTGGCTGCAATGGATTGTTTTCGTTGTCAGACTCTGAATCCACAGGATCCAACCTTAGTATAA
Protein sequence

>Msa1048660

MIIEIVVMYPIQCRKYRSGIDNLLVLLIGGIPIAMPTVLSDTMAIGSHRLSQQGAITKRMIAIEEMAAMVAAMDCFRCQTLNPQDPTLV*