Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105630 | RHN78016.1 | 81.381 | 333 | 20 | 2 | 1 | 291 | 985 | 1317 | 1.02e-162 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105630 | A0A396JIG2 | 81.381 | 333 | 20 | 2 | 1 | 291 | 985 | 1317 | 4.87e-163 | 505 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0105630 | Msa0152230 | 0.805728 | 1.160326e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105630 | MtrunA17_Chr1g0160951 | 81.381 | 333 | 20 | 2 | 1 | 291 | 985 | 1317 | 9.38e-167 | 505 |
| Msa0105630 | MtrunA17_Chr3g0107931 | 29.836 | 305 | 168 | 9 | 1 | 266 | 1215 | 1512 | 1.60e-28 | 115 |
| Msa0105630 | MtrunA17_Chr3g0108111 | 27.338 | 278 | 156 | 8 | 3 | 240 | 140 | 411 | 4.11e-24 | 102 |
| Msa0105630 | MtrunA17_Chr3g0091861 | 27.476 | 313 | 178 | 8 | 3 | 273 | 1139 | 1444 | 4.93e-24 | 102 |
| Msa0105630 | MtrunA17_Chr5g0439121 | 34.979 | 243 | 102 | 10 | 32 | 227 | 1299 | 1532 | 1.11e-23 | 101 |
| Msa0105630 | MtrunA17_Chr3g0097601 | 28.311 | 219 | 120 | 7 | 21 | 203 | 14 | 231 | 3.62e-21 | 90.5 |
| Msa0105630 | MtrunA17_Chr3g0108011 | 27.551 | 294 | 177 | 8 | 3 | 269 | 1226 | 1510 | 2.10e-20 | 91.7 |
| Msa0105630 | MtrunA17_Chr3g0107271 | 31.507 | 219 | 116 | 5 | 21 | 206 | 13 | 230 | 3.31e-20 | 87.4 |
| Msa0105630 | MtrunA17_Chr3g0108171 | 29.565 | 230 | 129 | 8 | 69 | 274 | 1204 | 1424 | 6.99e-20 | 90.1 |
| Msa0105630 | MtrunA17_Chr3g0108071 | 28.235 | 255 | 135 | 8 | 15 | 230 | 351 | 596 | 1.63e-19 | 88.6 |
| Msa0105630 | MtrunA17_Chr3g0108821 | 29.167 | 264 | 136 | 9 | 3 | 227 | 1188 | 1439 | 4.41e-19 | 87.8 |
| Msa0105630 | MtrunA17_Chr3g0105481 | 29.644 | 253 | 135 | 7 | 48 | 278 | 1081 | 1312 | 1.18e-18 | 86.3 |
| Msa0105630 | MtrunA17_Chr3g0108151 | 27.826 | 230 | 123 | 7 | 23 | 212 | 982 | 1208 | 1.17e-17 | 83.6 |
| Msa0105630 | MtrunA17_Chr3g0105501 | 32.432 | 185 | 110 | 4 | 48 | 220 | 20 | 201 | 1.54e-17 | 79.3 |
| Msa0105630 | MtrunA17_Chr3g0105521 | 30.808 | 198 | 88 | 4 | 50 | 202 | 1027 | 1220 | 6.88e-17 | 81.3 |
| Msa0105630 | MtrunA17_Chr3g0096701 | 28.163 | 245 | 142 | 9 | 57 | 276 | 39 | 274 | 8.84e-17 | 80.5 |
| Msa0105630 | MtrunA17_Chr3g0105551 | 34.091 | 176 | 86 | 4 | 59 | 208 | 1173 | 1344 | 1.07e-16 | 80.5 |
| Msa0105630 | MtrunA17_Chr3g0105601 | 30.811 | 185 | 103 | 3 | 48 | 211 | 287 | 467 | 2.70e-16 | 79.0 |
| Msa0105630 | MtrunA17_Chr3g0107081 | 31.613 | 155 | 81 | 5 | 70 | 211 | 47 | 189 | 1.32e-15 | 74.3 |
| Msa0105630 | MtrunA17_Chr3g0108811 | 31.250 | 160 | 94 | 4 | 69 | 213 | 1410 | 1568 | 1.85e-15 | 77.0 |
| Msa0105630 | MtrunA17_Chr3g0108811 | 32.353 | 170 | 81 | 5 | 3 | 147 | 1209 | 1369 | 1.61e-13 | 70.9 |
| Msa0105630 | MtrunA17_Chr3g0100241 | 30.811 | 185 | 100 | 5 | 54 | 217 | 40 | 217 | 1.03e-11 | 63.2 |
| Msa0105630 | MtrunA17_Chr2g0288311 | 27.811 | 169 | 95 | 5 | 51 | 212 | 12 | 160 | 5.72e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGAGTGGTTTCTAATAT+TGG | 0.182048 | 1_3:-14223343 | None:intergenic |
| TAGTGATTTCATGTTTCATT+TGG | 0.264203 | 1_3:+14221960 | None:intergenic |
| TCAGACATTCAAGGGATATT+TGG | 0.269678 | 1_3:+14222420 | Msa0105630:CDS |
| AGTGATTTCATGTTTCATTT+GGG | 0.327091 | 1_3:+14221961 | Msa0105630:exon |
| GGAAGCCGAAGTTTCTGATT+AGG | 0.343868 | 1_3:-14222906 | None:intergenic |
| GTTGAATCAAATGAAAGGTT+AGG | 0.344994 | 1_3:-14223029 | None:intergenic |
| AGCACTAGATATTTGAGTTT+AGG | 0.345136 | 1_3:-14222927 | None:intergenic |
| CTCATTTGTTGACCAATGAT+TGG | 0.345566 | 1_3:-14222456 | None:intergenic |
| ACAGGAAGTTCAAGATGTTC+AGG | 0.365825 | 1_3:+14223378 | Msa0105630:CDS |
| TGAACAATCTACATGATCTA+AGG | 0.370884 | 1_3:+14222502 | Msa0105630:CDS |
| ATGTAGATTGTTCAATTTCA+AGG | 0.371157 | 1_3:-14222493 | None:intergenic |
| TGAAGGATTACATAAAATAA+TGG | 0.395099 | 1_3:+14222671 | Msa0105630:CDS |
| TCATTTGGGTGCAAGACAAC+TGG | 0.402802 | 1_3:+14221975 | Msa0105630:CDS |
| CACTGATCCGAGCCAACATA+TGG | 0.414336 | 1_3:+14222968 | Msa0105630:CDS |
| ACATTGATCGCGATGTTCAC+TGG | 0.419850 | 1_3:+14223269 | Msa0105630:CDS |
| TGAAATATTTGACACTATAG+TGG | 0.421709 | 1_3:+14223300 | Msa0105630:CDS |
| GCTCTAACTTTGGAAACTCT+TGG | 0.434584 | 1_3:-14222818 | None:intergenic |
| GACTTAAAGAATATATTAGA+AGG | 0.438378 | 1_3:+14223065 | Msa0105630:CDS |
| ATGATAAGTGCAACGAGCTT+CGG | 0.438875 | 1_3:-14222750 | None:intergenic |
| TTGAATCAAATGAAAGGTTA+GGG | 0.459511 | 1_3:-14223028 | None:intergenic |
| CTAGATATGCAAGTTGTGGC+AGG | 0.464178 | 1_3:-14222635 | None:intergenic |
| CTTGAAGCACATCCAATCAT+TGG | 0.472705 | 1_3:+14222444 | Msa0105630:CDS |
| AAGGGAGCTTCCTTGTTCAC+AGG | 0.501430 | 1_3:+14223417 | Msa0105630:CDS |
| TGCAACTCCATATGTTGGCT+CGG | 0.512023 | 1_3:-14222975 | None:intergenic |
| TGCTGTACATGATTCAAGAA+TGG | 0.522819 | 1_3:+14223582 | Msa0105630:CDS |
| CATTGATCGCGATGTTCACT+GGG | 0.524368 | 1_3:+14223270 | Msa0105630:CDS |
| ATTTGACACTATAGTGGAAG+AGG | 0.525771 | 1_3:+14223306 | Msa0105630:CDS |
| AAGCATATCAGTTGAGATTG+AGG | 0.540937 | 1_3:-14222726 | None:intergenic |
| TCTTGAACTTCCTGTACTAT+CGG | 0.545323 | 1_3:-14223370 | None:intergenic |
| TGGCTCGGATCAGTGAGGTT+CGG | 0.546545 | 1_3:-14222960 | None:intergenic |
| TGATTCAACAACTACTCTTG+AGG | 0.554252 | 1_3:+14223043 | Msa0105630:CDS |
| AGGTTCAATCAGCATCTCAA+AGG | 0.554460 | 1_3:+14223398 | Msa0105630:CDS |
| GGTTCAATCAGCATCTCAAA+GGG | 0.559439 | 1_3:+14223399 | Msa0105630:CDS |
| AGATTCCTAATCAGAAACTT+CGG | 0.565853 | 1_3:+14222901 | Msa0105630:CDS |
| TAAAATAATGGAAGACAATG+AGG | 0.568733 | 1_3:+14222683 | Msa0105630:CDS |
| TGGTACCTCAGTGGATGTGT+TGG | 0.570857 | 1_3:-14221998 | None:intergenic |
| ATAGAGAACTCAGACATTCA+AGG | 0.578552 | 1_3:+14222411 | Msa0105630:CDS |
| TAGAGAACTCAGACATTCAA+GGG | 0.581304 | 1_3:+14222412 | Msa0105630:CDS |
| ATTTCTAGATATGCAAGTTG+TGG | 0.583283 | 1_3:-14222639 | None:intergenic |
| TCATCAATTACCGATAGTAC+AGG | 0.583512 | 1_3:+14223360 | Msa0105630:CDS |
| GCTTCAATTCTATAGGACAT+AGG | 0.586676 | 1_3:+14222348 | Msa0105630:intron |
| CTAGAAATCAGCAACTGTGA+AGG | 0.596744 | 1_3:+14222654 | Msa0105630:CDS |
| TACTATCGGTAATTGATGAG+TGG | 0.598168 | 1_3:-14223356 | None:intergenic |
| CATTCTGCAACTCCATATGT+TGG | 0.598398 | 1_3:-14222980 | None:intergenic |
| TTAGTATTAACCTGTGAACA+AGG | 0.602954 | 1_3:-14223427 | None:intergenic |
| TGATTAGGAATCTCATCATG+TGG | 0.606098 | 1_3:-14222891 | None:intergenic |
| CTTTGGAAACTCTTGGAATG+TGG | 0.613449 | 1_3:-14222811 | None:intergenic |
| TAGTTGTTGAATCAAATGAA+AGG | 0.619418 | 1_3:-14223034 | None:intergenic |
| AAGACAATGAGGAAAATCAA+AGG | 0.619508 | 1_3:+14222694 | Msa0105630:CDS |
| GAATGTGACATACAGCATTG+TGG | 0.694171 | 1_3:+14222998 | Msa0105630:CDS |
| TATGTTGGCTCGGATCAGTG+AGG | 0.720828 | 1_3:-14222965 | None:intergenic |
| ACTGGCCAACACATCCACTG+AGG | 0.764018 | 1_3:+14221993 | Msa0105630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTTATTGTAATTTTCA+CGG | + | chr1_3:14223133-14223152 | Msa0105630:intron | 15.0% |
| !! | AATTATAGCAAAAAAGAAAA+GGG | - | chr1_3:14223216-14223235 | None:intergenic | 15.0% |
| !! | AAATTATAGCAAAAAAGAAA+AGG | - | chr1_3:14223217-14223236 | None:intergenic | 15.0% |
| !!! | TATTGTTATTGTAATTTTCA+CGG | + | chr1_3:14223133-14223152 | Msa0105630:intron | 15.0% |
| !! | AATTATAGCAAAAAAGAAAA+GGG | - | chr1_3:14223216-14223235 | None:intergenic | 15.0% |
| !! | AAATTATAGCAAAAAAGAAA+AGG | - | chr1_3:14223217-14223236 | None:intergenic | 15.0% |
| !! | ACCAAAATTCTTATATTTGA+AGG | + | chr1_3:14222017-14222036 | Msa0105630:intron | 20.0% |
| !!! | TCCTTCAAATATAAGAATTT+TGG | - | chr1_3:14222021-14222040 | None:intergenic | 20.0% |
| !!! | TTTGTAAAGTTTTGACATTT+TGG | - | chr1_3:14222563-14222582 | None:intergenic | 20.0% |
| !! | TGAAGGATTACATAAAATAA+TGG | + | chr1_3:14222671-14222690 | Msa0105630:CDS | 20.0% |
| !! | GACTTAAAGAATATATTAGA+AGG | + | chr1_3:14223065-14223084 | Msa0105630:CDS | 20.0% |
| !!! | AAAATATTTCTTGCTTTAGA+AGG | - | chr1_3:14223171-14223190 | None:intergenic | 20.0% |
| !!! | AGTGATGTAATTATATCTTT+TGG | + | chr1_3:14223520-14223539 | Msa0105630:intron | 20.0% |
| !! | ACCAAAATTCTTATATTTGA+AGG | + | chr1_3:14222017-14222036 | Msa0105630:intron | 20.0% |
| !!! | TCCTTCAAATATAAGAATTT+TGG | - | chr1_3:14222021-14222040 | None:intergenic | 20.0% |
| !!! | TTTGTAAAGTTTTGACATTT+TGG | - | chr1_3:14222563-14222582 | None:intergenic | 20.0% |
| !! | TGAAGGATTACATAAAATAA+TGG | + | chr1_3:14222671-14222690 | Msa0105630:CDS | 20.0% |
| !! | GACTTAAAGAATATATTAGA+AGG | + | chr1_3:14223065-14223084 | Msa0105630:CDS | 20.0% |
| !!! | AAAATATTTCTTGCTTTAGA+AGG | - | chr1_3:14223171-14223190 | None:intergenic | 20.0% |
| !!! | AGTGATGTAATTATATCTTT+TGG | + | chr1_3:14223520-14223539 | Msa0105630:intron | 20.0% |
| ! | AGTGATTTCATGTTTCATTT+GGG | + | chr1_3:14221961-14221980 | Msa0105630:exon | 25.0% |
| ! | GTTAATGAAGTTCAAATTGA+TGG | - | chr1_3:14222090-14222109 | None:intergenic | 25.0% |
| ! | GATGGTTAATGAAAATAACA+AGG | - | chr1_3:14222130-14222149 | None:intergenic | 25.0% |
| !!! | AGTTTCAAAGGTATTTCTTA+AGG | - | chr1_3:14222244-14222263 | None:intergenic | 25.0% |
| ! | ATGTAGATTGTTCAATTTCA+AGG | - | chr1_3:14222496-14222515 | None:intergenic | 25.0% |
| ! | TGTCAAAACTTTACAAATTG+AGG | + | chr1_3:14222566-14222585 | Msa0105630:intron | 25.0% |
| ! | GTCAAAACTTTACAAATTGA+GGG | + | chr1_3:14222567-14222586 | Msa0105630:intron | 25.0% |
| !! | TAAAATAATGGAAGACAATG+AGG | + | chr1_3:14222683-14222702 | Msa0105630:CDS | 25.0% |
| ! | TTGAATCAAATGAAAGGTTA+GGG | - | chr1_3:14223031-14223050 | None:intergenic | 25.0% |
| ! | TAGTTGTTGAATCAAATGAA+AGG | - | chr1_3:14223037-14223056 | None:intergenic | 25.0% |
| ! | TGAAATATTTGACACTATAG+TGG | + | chr1_3:14223300-14223319 | Msa0105630:CDS | 25.0% |
| ! | CTAACTAATCCATCTATATA+TGG | + | chr1_3:14223446-14223465 | Msa0105630:intron | 25.0% |
| ! | AGTGATTTCATGTTTCATTT+GGG | + | chr1_3:14221961-14221980 | Msa0105630:exon | 25.0% |
| ! | GTTAATGAAGTTCAAATTGA+TGG | - | chr1_3:14222090-14222109 | None:intergenic | 25.0% |
| ! | GATGGTTAATGAAAATAACA+AGG | - | chr1_3:14222130-14222149 | None:intergenic | 25.0% |
| !!! | AGTTTCAAAGGTATTTCTTA+AGG | - | chr1_3:14222244-14222263 | None:intergenic | 25.0% |
| ! | ATGTAGATTGTTCAATTTCA+AGG | - | chr1_3:14222496-14222515 | None:intergenic | 25.0% |
| ! | TGTCAAAACTTTACAAATTG+AGG | + | chr1_3:14222566-14222585 | Msa0105630:intron | 25.0% |
| ! | GTCAAAACTTTACAAATTGA+GGG | + | chr1_3:14222567-14222586 | Msa0105630:intron | 25.0% |
| !! | TAAAATAATGGAAGACAATG+AGG | + | chr1_3:14222683-14222702 | Msa0105630:CDS | 25.0% |
| ! | TTGAATCAAATGAAAGGTTA+GGG | - | chr1_3:14223031-14223050 | None:intergenic | 25.0% |
| ! | TAGTTGTTGAATCAAATGAA+AGG | - | chr1_3:14223037-14223056 | None:intergenic | 25.0% |
| ! | TGAAATATTTGACACTATAG+TGG | + | chr1_3:14223300-14223319 | Msa0105630:CDS | 25.0% |
| ! | CTAACTAATCCATCTATATA+TGG | + | chr1_3:14223446-14223465 | Msa0105630:intron | 25.0% |
| TGATGGTTAATTACGTTCAA+TGG | - | chr1_3:14222152-14222171 | None:intergenic | 30.0% | |
| ! | ATTTTCGTCGTCAATTTTGA+TGG | - | chr1_3:14222169-14222188 | None:intergenic | 30.0% |
| AGTGTATGCTTCAATTCTAT+AGG | + | chr1_3:14222341-14222360 | Msa0105630:intron | 30.0% | |
| TGAACAATCTACATGATCTA+AGG | + | chr1_3:14222502-14222521 | Msa0105630:CDS | 30.0% | |
| !!! | TGGAGGCTCATAAATTTTTT+TGG | - | chr1_3:14222543-14222562 | None:intergenic | 30.0% |
| !! | GTAAAGTTTTGACATTTTGG+AGG | - | chr1_3:14222560-14222579 | None:intergenic | 30.0% |
| ! | ATTTCTAGATATGCAAGTTG+TGG | - | chr1_3:14222642-14222661 | None:intergenic | 30.0% |
| AAGACAATGAGGAAAATCAA+AGG | + | chr1_3:14222694-14222713 | Msa0105630:CDS | 30.0% | |
| AGATTCCTAATCAGAAACTT+CGG | + | chr1_3:14222901-14222920 | Msa0105630:CDS | 30.0% | |
| ! | AGCACTAGATATTTGAGTTT+AGG | - | chr1_3:14222930-14222949 | None:intergenic | 30.0% |
| GTTGAATCAAATGAAAGGTT+AGG | - | chr1_3:14223032-14223051 | None:intergenic | 30.0% | |
| TGATGAGTGGTTTCTAATAT+TGG | - | chr1_3:14223346-14223365 | None:intergenic | 30.0% | |
| TTAGTATTAACCTGTGAACA+AGG | - | chr1_3:14223430-14223449 | None:intergenic | 30.0% | |
| TGATGGTTAATTACGTTCAA+TGG | - | chr1_3:14222152-14222171 | None:intergenic | 30.0% | |
| ! | ATTTTCGTCGTCAATTTTGA+TGG | - | chr1_3:14222169-14222188 | None:intergenic | 30.0% |
| AGTGTATGCTTCAATTCTAT+AGG | + | chr1_3:14222341-14222360 | Msa0105630:intron | 30.0% | |
| TGAACAATCTACATGATCTA+AGG | + | chr1_3:14222502-14222521 | Msa0105630:CDS | 30.0% | |
| !!! | TGGAGGCTCATAAATTTTTT+TGG | - | chr1_3:14222543-14222562 | None:intergenic | 30.0% |
| !! | GTAAAGTTTTGACATTTTGG+AGG | - | chr1_3:14222560-14222579 | None:intergenic | 30.0% |
| ! | ATTTCTAGATATGCAAGTTG+TGG | - | chr1_3:14222642-14222661 | None:intergenic | 30.0% |
| AAGACAATGAGGAAAATCAA+AGG | + | chr1_3:14222694-14222713 | Msa0105630:CDS | 30.0% | |
| AGATTCCTAATCAGAAACTT+CGG | + | chr1_3:14222901-14222920 | Msa0105630:CDS | 30.0% | |
| ! | AGCACTAGATATTTGAGTTT+AGG | - | chr1_3:14222930-14222949 | None:intergenic | 30.0% |
| GTTGAATCAAATGAAAGGTT+AGG | - | chr1_3:14223032-14223051 | None:intergenic | 30.0% | |
| TGATGAGTGGTTTCTAATAT+TGG | - | chr1_3:14223346-14223365 | None:intergenic | 30.0% | |
| TTAGTATTAACCTGTGAACA+AGG | - | chr1_3:14223430-14223449 | None:intergenic | 30.0% | |
| !! | TAAGAATTTTGGTACCTCAG+TGG | - | chr1_3:14222010-14222029 | None:intergenic | 35.0% |
| GGTTAATTACGTTCAATGGA+TGG | - | chr1_3:14222148-14222167 | None:intergenic | 35.0% | |
| AGCATTGTATTGAAGCTATG+TGG | - | chr1_3:14222267-14222286 | None:intergenic | 35.0% | |
| CATAGCTTCAATACAATGCT+TGG | + | chr1_3:14222267-14222286 | Msa0105630:intron | 35.0% | |
| TCCACACATCTCCTAAATTT+GGG | + | chr1_3:14222290-14222309 | Msa0105630:intron | 35.0% | |
| ACGAGAAACAACCCAAATTT+AGG | - | chr1_3:14222304-14222323 | None:intergenic | 35.0% | |
| GCTTCAATTCTATAGGACAT+AGG | + | chr1_3:14222348-14222367 | Msa0105630:intron | 35.0% | |
| ATAGAGAACTCAGACATTCA+AGG | + | chr1_3:14222411-14222430 | Msa0105630:CDS | 35.0% | |
| TAGAGAACTCAGACATTCAA+GGG | + | chr1_3:14222412-14222431 | Msa0105630:CDS | 35.0% | |
| TCAGACATTCAAGGGATATT+TGG | + | chr1_3:14222420-14222439 | Msa0105630:CDS | 35.0% | |
| ! | CTCATTTGTTGACCAATGAT+TGG | - | chr1_3:14222459-14222478 | None:intergenic | 35.0% |
| ! | TGATCTAAGGTACACATTCA+TGG | + | chr1_3:14222515-14222534 | Msa0105630:intron | 35.0% |
| ! | GATCTAAGGTACACATTCAT+GGG | + | chr1_3:14222516-14222535 | Msa0105630:intron | 35.0% |
| AAGCATATCAGTTGAGATTG+AGG | - | chr1_3:14222729-14222748 | None:intergenic | 35.0% | |
| ! | AGATGAGACTTTTCAAACTG+TGG | - | chr1_3:14222785-14222804 | None:intergenic | 35.0% |
| ! | ATGATCATGAGCTCTAACTT+TGG | - | chr1_3:14222831-14222850 | None:intergenic | 35.0% |
| TGATTAGGAATCTCATCATG+TGG | - | chr1_3:14222894-14222913 | None:intergenic | 35.0% | |
| TGATTCAACAACTACTCTTG+AGG | + | chr1_3:14223043-14223062 | Msa0105630:CDS | 35.0% | |
| TAGCAAAAAAGAAAAGGGAG+TGG | - | chr1_3:14223211-14223230 | None:intergenic | 35.0% | |
| ! | ATTTGACACTATAGTGGAAG+AGG | + | chr1_3:14223306-14223325 | Msa0105630:CDS | 35.0% |
| TACTATCGGTAATTGATGAG+TGG | - | chr1_3:14223359-14223378 | None:intergenic | 35.0% | |
| TCATCAATTACCGATAGTAC+AGG | + | chr1_3:14223360-14223379 | Msa0105630:CDS | 35.0% | |
| TCTTGAACTTCCTGTACTAT+CGG | - | chr1_3:14223373-14223392 | None:intergenic | 35.0% | |
| TGCAATGTGCCATATATAGA+TGG | - | chr1_3:14223458-14223477 | None:intergenic | 35.0% | |
| TGCTGTACATGATTCAAGAA+TGG | + | chr1_3:14223582-14223601 | Msa0105630:CDS | 35.0% | |
| !! | TAAGAATTTTGGTACCTCAG+TGG | - | chr1_3:14222010-14222029 | None:intergenic | 35.0% |
| GGTTAATTACGTTCAATGGA+TGG | - | chr1_3:14222148-14222167 | None:intergenic | 35.0% | |
| AGCATTGTATTGAAGCTATG+TGG | - | chr1_3:14222267-14222286 | None:intergenic | 35.0% | |
| CATAGCTTCAATACAATGCT+TGG | + | chr1_3:14222267-14222286 | Msa0105630:intron | 35.0% | |
| TCCACACATCTCCTAAATTT+GGG | + | chr1_3:14222290-14222309 | Msa0105630:intron | 35.0% | |
| ACGAGAAACAACCCAAATTT+AGG | - | chr1_3:14222304-14222323 | None:intergenic | 35.0% | |
| GCTTCAATTCTATAGGACAT+AGG | + | chr1_3:14222348-14222367 | Msa0105630:intron | 35.0% | |
| ATAGAGAACTCAGACATTCA+AGG | + | chr1_3:14222411-14222430 | Msa0105630:CDS | 35.0% | |
| TAGAGAACTCAGACATTCAA+GGG | + | chr1_3:14222412-14222431 | Msa0105630:CDS | 35.0% | |
| TCAGACATTCAAGGGATATT+TGG | + | chr1_3:14222420-14222439 | Msa0105630:CDS | 35.0% | |
| ! | CTCATTTGTTGACCAATGAT+TGG | - | chr1_3:14222459-14222478 | None:intergenic | 35.0% |
| ! | TGATCTAAGGTACACATTCA+TGG | + | chr1_3:14222515-14222534 | Msa0105630:intron | 35.0% |
| ! | GATCTAAGGTACACATTCAT+GGG | + | chr1_3:14222516-14222535 | Msa0105630:intron | 35.0% |
| AAGCATATCAGTTGAGATTG+AGG | - | chr1_3:14222729-14222748 | None:intergenic | 35.0% | |
| ! | AGATGAGACTTTTCAAACTG+TGG | - | chr1_3:14222785-14222804 | None:intergenic | 35.0% |
| ! | ATGATCATGAGCTCTAACTT+TGG | - | chr1_3:14222831-14222850 | None:intergenic | 35.0% |
| TGATTAGGAATCTCATCATG+TGG | - | chr1_3:14222894-14222913 | None:intergenic | 35.0% | |
| TGATTCAACAACTACTCTTG+AGG | + | chr1_3:14223043-14223062 | Msa0105630:CDS | 35.0% | |
| TAGCAAAAAAGAAAAGGGAG+TGG | - | chr1_3:14223211-14223230 | None:intergenic | 35.0% | |
| ! | ATTTGACACTATAGTGGAAG+AGG | + | chr1_3:14223306-14223325 | Msa0105630:CDS | 35.0% |
| TACTATCGGTAATTGATGAG+TGG | - | chr1_3:14223359-14223378 | None:intergenic | 35.0% | |
| TCATCAATTACCGATAGTAC+AGG | + | chr1_3:14223360-14223379 | Msa0105630:CDS | 35.0% | |
| TCTTGAACTTCCTGTACTAT+CGG | - | chr1_3:14223373-14223392 | None:intergenic | 35.0% | |
| TGCAATGTGCCATATATAGA+TGG | - | chr1_3:14223458-14223477 | None:intergenic | 35.0% | |
| TGCTGTACATGATTCAAGAA+TGG | + | chr1_3:14223582-14223601 | Msa0105630:CDS | 35.0% | |
| GAAGCTATGTGGAGTTTCAA+AGG | - | chr1_3:14222256-14222275 | None:intergenic | 40.0% | |
| GTCCACACATCTCCTAAATT+TGG | + | chr1_3:14222289-14222308 | Msa0105630:intron | 40.0% | |
| ACCCAAATTTAGGAGATGTG+TGG | - | chr1_3:14222294-14222313 | None:intergenic | 40.0% | |
| !!! | TGCATAGCTTTTCTAGAGTC+TGG | - | chr1_3:14222392-14222411 | None:intergenic | 40.0% |
| CTTGAAGCACATCCAATCAT+TGG | + | chr1_3:14222444-14222463 | Msa0105630:CDS | 40.0% | |
| CTAGAAATCAGCAACTGTGA+AGG | + | chr1_3:14222654-14222673 | Msa0105630:CDS | 40.0% | |
| ATGATAAGTGCAACGAGCTT+CGG | - | chr1_3:14222753-14222772 | None:intergenic | 40.0% | |
| ! | CTTTGGAAACTCTTGGAATG+TGG | - | chr1_3:14222814-14222833 | None:intergenic | 40.0% |
| ! | GCTCTAACTTTGGAAACTCT+TGG | - | chr1_3:14222821-14222840 | None:intergenic | 40.0% |
| AAAAGAAGCCTCTCAGTTAG+AGG | + | chr1_3:14222851-14222870 | Msa0105630:intron | 40.0% | |
| AAACATGTCCTCTAACTGAG+AGG | - | chr1_3:14222862-14222881 | None:intergenic | 40.0% | |
| CATTCTGCAACTCCATATGT+TGG | - | chr1_3:14222983-14223002 | None:intergenic | 40.0% | |
| GAATGTGACATACAGCATTG+TGG | + | chr1_3:14222998-14223017 | Msa0105630:CDS | 40.0% | |
| ACAGGAAGTTCAAGATGTTC+AGG | + | chr1_3:14223378-14223397 | Msa0105630:CDS | 40.0% | |
| AGGTTCAATCAGCATCTCAA+AGG | + | chr1_3:14223398-14223417 | Msa0105630:CDS | 40.0% | |
| GGTTCAATCAGCATCTCAAA+GGG | + | chr1_3:14223399-14223418 | Msa0105630:CDS | 40.0% | |
| GAAGCTATGTGGAGTTTCAA+AGG | - | chr1_3:14222256-14222275 | None:intergenic | 40.0% | |
| GTCCACACATCTCCTAAATT+TGG | + | chr1_3:14222289-14222308 | Msa0105630:intron | 40.0% | |
| ACCCAAATTTAGGAGATGTG+TGG | - | chr1_3:14222294-14222313 | None:intergenic | 40.0% | |
| !!! | TGCATAGCTTTTCTAGAGTC+TGG | - | chr1_3:14222392-14222411 | None:intergenic | 40.0% |
| CTTGAAGCACATCCAATCAT+TGG | + | chr1_3:14222444-14222463 | Msa0105630:CDS | 40.0% | |
| CTAGAAATCAGCAACTGTGA+AGG | + | chr1_3:14222654-14222673 | Msa0105630:CDS | 40.0% | |
| ATGATAAGTGCAACGAGCTT+CGG | - | chr1_3:14222753-14222772 | None:intergenic | 40.0% | |
| ! | CTTTGGAAACTCTTGGAATG+TGG | - | chr1_3:14222814-14222833 | None:intergenic | 40.0% |
| ! | GCTCTAACTTTGGAAACTCT+TGG | - | chr1_3:14222821-14222840 | None:intergenic | 40.0% |
| AAAAGAAGCCTCTCAGTTAG+AGG | + | chr1_3:14222851-14222870 | Msa0105630:intron | 40.0% | |
| AAACATGTCCTCTAACTGAG+AGG | - | chr1_3:14222862-14222881 | None:intergenic | 40.0% | |
| CATTCTGCAACTCCATATGT+TGG | - | chr1_3:14222983-14223002 | None:intergenic | 40.0% | |
| GAATGTGACATACAGCATTG+TGG | + | chr1_3:14222998-14223017 | Msa0105630:CDS | 40.0% | |
| ACAGGAAGTTCAAGATGTTC+AGG | + | chr1_3:14223378-14223397 | Msa0105630:CDS | 40.0% | |
| AGGTTCAATCAGCATCTCAA+AGG | + | chr1_3:14223398-14223417 | Msa0105630:CDS | 40.0% | |
| GGTTCAATCAGCATCTCAAA+GGG | + | chr1_3:14223399-14223418 | Msa0105630:CDS | 40.0% | |
| TCATTTGGGTGCAAGACAAC+TGG | + | chr1_3:14221975-14221994 | Msa0105630:CDS | 45.0% | |
| ! | CAAGGTGTCACAACTCATTG+TGG | - | chr1_3:14222112-14222131 | None:intergenic | 45.0% |
| CTAGATATGCAAGTTGTGGC+AGG | - | chr1_3:14222638-14222657 | None:intergenic | 45.0% | |
| GGAAGCCGAAGTTTCTGATT+AGG | - | chr1_3:14222909-14222928 | None:intergenic | 45.0% | |
| ! | TGCAACTCCATATGTTGGCT+CGG | - | chr1_3:14222978-14222997 | None:intergenic | 45.0% |
| ACATTGATCGCGATGTTCAC+TGG | + | chr1_3:14223269-14223288 | Msa0105630:CDS | 45.0% | |
| CATTGATCGCGATGTTCACT+GGG | + | chr1_3:14223270-14223289 | Msa0105630:CDS | 45.0% | |
| TCATTTGGGTGCAAGACAAC+TGG | + | chr1_3:14221975-14221994 | Msa0105630:CDS | 45.0% | |
| ! | CAAGGTGTCACAACTCATTG+TGG | - | chr1_3:14222112-14222131 | None:intergenic | 45.0% |
| CTAGATATGCAAGTTGTGGC+AGG | - | chr1_3:14222638-14222657 | None:intergenic | 45.0% | |
| GGAAGCCGAAGTTTCTGATT+AGG | - | chr1_3:14222909-14222928 | None:intergenic | 45.0% | |
| ! | TGCAACTCCATATGTTGGCT+CGG | - | chr1_3:14222978-14222997 | None:intergenic | 45.0% |
| ACATTGATCGCGATGTTCAC+TGG | + | chr1_3:14223269-14223288 | Msa0105630:CDS | 45.0% | |
| CATTGATCGCGATGTTCACT+GGG | + | chr1_3:14223270-14223289 | Msa0105630:CDS | 45.0% | |
| TGGTACCTCAGTGGATGTGT+TGG | - | chr1_3:14222001-14222020 | None:intergenic | 50.0% | |
| !! | TATGTTGGCTCGGATCAGTG+AGG | - | chr1_3:14222968-14222987 | None:intergenic | 50.0% |
| CACTGATCCGAGCCAACATA+TGG | + | chr1_3:14222968-14222987 | Msa0105630:CDS | 50.0% | |
| AAGGGAGCTTCCTTGTTCAC+AGG | + | chr1_3:14223417-14223436 | Msa0105630:CDS | 50.0% | |
| TGGTACCTCAGTGGATGTGT+TGG | - | chr1_3:14222001-14222020 | None:intergenic | 50.0% | |
| !! | TATGTTGGCTCGGATCAGTG+AGG | - | chr1_3:14222968-14222987 | None:intergenic | 50.0% |
| CACTGATCCGAGCCAACATA+TGG | + | chr1_3:14222968-14222987 | Msa0105630:CDS | 50.0% | |
| AAGGGAGCTTCCTTGTTCAC+AGG | + | chr1_3:14223417-14223436 | Msa0105630:CDS | 50.0% | |
| ACTGGCCAACACATCCACTG+AGG | + | chr1_3:14221993-14222012 | Msa0105630:CDS | 55.0% | |
| ! | TGGCTCGGATCAGTGAGGTT+CGG | - | chr1_3:14222963-14222982 | None:intergenic | 55.0% |
| ACTGGCCAACACATCCACTG+AGG | + | chr1_3:14221993-14222012 | Msa0105630:CDS | 55.0% | |
| ! | TGGCTCGGATCAGTGAGGTT+CGG | - | chr1_3:14222963-14222982 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 14221961 | 14223615 | 14221961 | ID=Msa0105630;Name=Msa0105630 |
| chr1_3 | mRNA | 14221961 | 14223615 | 14221961 | ID=Msa0105630-mRNA-1;Parent=Msa0105630;Name=Msa0105630-mRNA-1;_AED=0.38;_eAED=0.38;_QI=9|0.2|0.33|0.33|0.6|0.33|6|0|293 |
| chr1_3 | exon | 14221961 | 14222014 | 14221961 | ID=Msa0105630-mRNA-1:exon:5613;Parent=Msa0105630-mRNA-1 |
| chr1_3 | exon | 14222363 | 14222523 | 14222363 | ID=Msa0105630-mRNA-1:exon:5614;Parent=Msa0105630-mRNA-1 |
| chr1_3 | exon | 14222596 | 14222832 | 14222596 | ID=Msa0105630-mRNA-1:exon:5615;Parent=Msa0105630-mRNA-1 |
| chr1_3 | exon | 14222887 | 14223086 | 14222887 | ID=Msa0105630-mRNA-1:exon:5616;Parent=Msa0105630-mRNA-1 |
| chr1_3 | exon | 14223263 | 14223438 | 14223263 | ID=Msa0105630-mRNA-1:exon:5617;Parent=Msa0105630-mRNA-1 |
| chr1_3 | exon | 14223553 | 14223615 | 14223553 | ID=Msa0105630-mRNA-1:exon:5618;Parent=Msa0105630-mRNA-1 |
| chr1_3 | five_prime_UTR | 14221961 | 14221969 | 14221961 | ID=Msa0105630-mRNA-1:five_prime_utr;Parent=Msa0105630-mRNA-1 |
| chr1_3 | CDS | 14221970 | 14222014 | 14221970 | ID=Msa0105630-mRNA-1:cds;Parent=Msa0105630-mRNA-1 |
| chr1_3 | CDS | 14222363 | 14222523 | 14222363 | ID=Msa0105630-mRNA-1:cds;Parent=Msa0105630-mRNA-1 |
| chr1_3 | CDS | 14222596 | 14222832 | 14222596 | ID=Msa0105630-mRNA-1:cds;Parent=Msa0105630-mRNA-1 |
| chr1_3 | CDS | 14222887 | 14223086 | 14222887 | ID=Msa0105630-mRNA-1:cds;Parent=Msa0105630-mRNA-1 |
| chr1_3 | CDS | 14223263 | 14223438 | 14223263 | ID=Msa0105630-mRNA-1:cds;Parent=Msa0105630-mRNA-1 |
| chr1_3 | CDS | 14223553 | 14223615 | 14223553 | ID=Msa0105630-mRNA-1:cds;Parent=Msa0105630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
