AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0152230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0152230 MtrunA17_Chr1g0160951 87.128 1243 87 3 1 1189 549 1772 0.0 2104
Msa0152230 MtrunA17_Chr3g0108151 32.323 594 338 15 66 636 656 1208 5.35e-74 270
Msa0152230 MtrunA17_Chr3g0108111 36.320 413 243 10 259 664 12 411 1.32e-70 248
Msa0152230 MtrunA17_Chr3g0091861 36.085 424 255 8 259 675 1011 1425 2.26e-70 259
Msa0152230 MtrunA17_Chr3g0091861 26.629 537 309 18 26 548 609 1074 8.60e-34 142
Msa0152230 MtrunA17_Chr3g0108821 39.043 397 214 12 254 642 1058 1434 1.01e-67 251
Msa0152230 MtrunA17_Chr3g0108821 26.667 675 371 28 26 630 667 1287 4.39e-37 152
Msa0152230 MtrunA17_Chr3g0105481 30.311 739 379 22 26 683 609 1292 2.67e-66 246
Msa0152230 MtrunA17_Chr5g0443761 31.353 606 354 17 42 624 521 1087 2.95e-66 245
Msa0152230 MtrunA17_Chr3g0107931 35.616 438 262 10 259 690 1089 1512 4.85e-65 243
Msa0152230 MtrunA17_Chr3g0107931 25.554 677 364 24 26 622 692 1308 9.53e-39 158
Msa0152230 MtrunA17_Chr3g0108171 27.083 816 433 23 63 774 724 1481 1.16e-62 235
Msa0152230 MtrunA17_Chr3g0108011 33.710 442 253 10 259 693 1102 1510 2.62e-61 231
Msa0152230 MtrunA17_Chr3g0108011 25.588 680 398 22 26 639 698 1335 5.60e-41 165
Msa0152230 MtrunA17_Chr3g0108071 31.021 519 302 14 259 760 231 710 9.63e-59 220
Msa0152230 MtrunA17_Chr5g0439121 32.103 542 314 17 127 651 1028 1532 2.41e-58 221
Msa0152230 MtrunA17_Chr5g0439121 28.374 578 317 20 6 569 640 1134 3.77e-43 172
Msa0152230 MtrunA17_Chr3g0108811 35.369 393 220 12 254 639 1079 1444 9.73e-54 206
Msa0152230 MtrunA17_Chr3g0108811 27.769 623 336 22 26 628 679 1207 1.58e-38 157
Msa0152230 MtrunA17_Chr3g0108811 35.260 173 106 3 466 637 1401 1568 1.19e-23 108
Msa0152230 MtrunA17_Chr3g0100261 27.911 584 343 19 51 623 705 1221 1.17e-44 176
Msa0152230 MtrunA17_Chr3g0099591 26.073 629 369 22 11 620 661 1212 9.95e-44 174
Msa0152230 MtrunA17_Chr3g0107181 33.951 324 177 8 26 349 652 938 2.18e-41 165
Msa0152230 MtrunA17_Chr3g0105521 31.635 373 169 10 259 626 929 1220 2.02e-39 160
Msa0152230 MtrunA17_Chr3g0105521 33.119 311 182 9 26 335 540 825 1.61e-30 131
Msa0152230 MtrunA17_Chr3g0107271 37.991 229 130 5 403 630 13 230 3.91e-37 140
Msa0152230 MtrunA17_Chr8g0360991 26.273 609 358 21 26 623 680 1208 1.37e-36 150
Msa0152230 MtrunA17_Chr3g0097601 33.186 226 142 4 403 627 14 231 2.37e-36 139
Msa0152230 MtrunA17_Chr3g0105551 34.899 298 163 12 26 321 660 928 1.72e-34 144
Msa0152230 MtrunA17_Chr3g0105551 31.313 297 171 7 350 632 1067 1344 7.27e-30 129
Msa0152230 MtrunA17_Chr3g0105601 31.609 348 193 12 335 657 157 484 1.79e-34 139
Msa0152230 MtrunA17_Chr3g0106021 36.818 220 128 6 264 478 174 387 6.19e-34 135
Msa0152230 MtrunA17_Chr3g0105501 37.736 212 119 5 435 644 1 201 2.83e-30 119
Msa0152230 MtrunA17_Chr3g0097021 36.530 219 119 4 101 319 1 199 3.37e-30 122
Msa0152230 MtrunA17_Chr3g0091851 34.532 278 159 8 46 320 621 878 9.06e-29 125
Msa0152230 MtrunA17_Chr3g0091851 31.839 223 123 6 186 385 832 1048 5.61e-21 100
Msa0152230 MtrunA17_Chr3g0107281 26.806 526 289 16 82 566 1 471 2.75e-27 117
Msa0152230 MtrunA17_Chr3g0107281 38.849 139 82 3 259 395 356 493 1.31e-20 97.1
Msa0152230 MtrunA17_Chr3g0099571 25.821 457 256 18 46 485 684 1074 1.44e-26 118
Msa0152230 MtrunA17_Chr3g0108781 42.647 136 68 5 254 385 40 169 2.44e-26 107
Msa0152230 MtrunA17_Chr3g0100231 31.250 288 169 10 69 350 427 691 3.08e-26 116
Msa0152230 MtrunA17_Chr7g0223931 37.778 180 101 5 26 202 495 666 3.91e-26 115
Msa0152230 MtrunA17_Chr3g0107081 33.708 178 101 4 458 635 29 189 8.11e-26 107
Msa0152230 MtrunA17_Chr3g0096701 34.715 193 117 4 458 646 34 221 1.29e-25 114
Msa0152230 MtrunA17_Chr3g0108221 41.860 129 68 3 259 385 183 306 4.10e-25 108
Msa0152230 MtrunA17_Chr7g0229721 29.755 326 155 11 26 349 662 915 1.01e-24 112
Msa0152230 MtrunA17_Chr3g0097621 32.270 282 148 9 68 335 107 359 3.54e-24 107
Msa0152230 MtrunA17_Chr3g0107211 25.142 529 316 18 29 507 677 1175 5.89e-24 109
Msa0152230 MtrunA17_Chr3g0097641 31.268 339 200 10 26 355 639 953 1.63e-22 105
Msa0152230 MtrunA17_Chr3g0097641 38.095 126 73 2 259 382 1011 1133 1.82e-17 88.6
Msa0152230 MtrunA17_Chr3g0096821 25.993 554 267 21 26 548 663 1104 2.65e-22 104
Msa0152230 MtrunA17_Chr3g0096821 32.558 129 83 2 259 383 1006 1134 1.81e-13 75.5
Msa0152230 MtrunA17_Chr3g0097611 40.800 125 70 2 259 383 21 141 1.14e-21 92.8
Msa0152230 MtrunA17_Chr3g0107981 33.333 174 112 3 82 253 1 172 9.21e-21 92.0
Msa0152230 MtrunA17_Chr3g0100241 34.574 188 113 5 457 641 37 217 3.13e-20 90.9
Msa0152230 MtrunA17_Chr7g0229751 29.832 238 127 6 20 257 608 805 6.90e-20 96.3
Msa0152230 MtrunA17_Chr3g0096721 26.769 325 142 9 26 349 662 891 4.02e-19 94.0
Msa0152230 MtrunA17_Chr3g0096721 37.405 131 74 3 259 383 999 1127 4.06e-14 77.4
Msa0152230 MtrunA17_Chr2g0288311 37.302 126 69 3 476 600 31 147 4.31e-18 83.6
Msa0152230 MtrunA17_Chr3g0106011 31.081 222 123 5 143 364 1 192 3.89e-17 83.2
Msa0152230 MtrunA17_Chr3g0108091 25.984 254 165 9 522 760 2 247 5.11e-15 79.7
Msa0152230 MtrunA17_Chr1g0163891 25.216 464 254 22 131 558 1873 2279 7.13e-15 80.5
Msa0152230 MtrunA17_Chr1g0163891 21.176 765 469 29 25 715 708 1412 3.88e-11 68.2
Msa0152230 MtrunA17_Chr1g0163791 27.020 396 215 20 190 558 1395 1743 6.85e-13 73.9
Msa0152230 MtrunA17_Chr3g0107071 29.231 195 126 4 48 233 3 194 7.73e-13 70.5
Msa0152230 MtrunA17_Chr1g0174511 24.537 432 268 20 133 550 1338 1725 1.33e-12 72.8
Msa0152230 MtrunA17_Chr2g0323691 21.389 547 361 17 29 545 699 1206 1.41e-12 72.8
Msa0152230 MtrunA17_Chr3g0081941 22.602 615 348 22 17 567 681 1231 3.13e-12 71.6
Msa0152230 MtrunA17_Chr1g0167981 24.222 450 273 21 133 558 1339 1744 1.11e-11 70.1
Msa0152230 MtrunA17_Chr2g0314301 24.561 285 168 10 356 630 743 990 2.43e-11 68.6
Msa0152230 MtrunA17_Chr8g0359891 24.419 602 367 30 177 743 420 968 5.36e-11 67.8
Msa0152230 MtrunA17_Chr2g0313491 32.857 140 76 4 403 529 772 906 8.80e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 202 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTAATTAATGAAATATT+TGG 0.179659 1_4:+14799378 None:intergenic
TGATGAATGGTTTCTGATAT+TGG 0.184080 1_4:+14802839 None:intergenic
ATGAAATATTTGGCTTATTC+AGG 0.185128 1_4:+14799388 None:intergenic
AAAGTTAAATGCTCCAATTC+TGG 0.211976 1_4:+14804385 None:intergenic
CCACCTCCTTCTGACTTCTT+TGG 0.243522 1_4:-14805193 Msa0152230:CDS
CATGCAACTGGTGACATAAA+TGG 0.248258 1_4:+14805149 None:intergenic
CTTGAACCTTGGTAGAATTA+AGG 0.262162 1_4:-14805107 Msa0152230:CDS
TAGTGATTTCATGTTTCATT+TGG 0.264203 1_4:-14804251 Msa0152230:CDS
TCAGACATTCAAGGGATATT+TGG 0.269678 1_4:-14803762 Msa0152230:CDS
GTTGGAAGAATTGAGAATTA+AGG 0.270133 1_4:-14804590 Msa0152230:CDS
GAGCCACGCGTCACGCTATT+CGG 0.293537 1_4:+14804523 None:intergenic
CTTGTGTTATTTCACATTGA+TGG 0.293556 1_4:+14802370 None:intergenic
AAACTCACCAAGACATTATA+AGG 0.293808 1_4:+14802123 None:intergenic
CACTTCAAATGCAACAATTA+AGG 0.296744 1_4:-14805467 Msa0152230:CDS
TGCCAATGTCTCAGAAAGTT+TGG 0.298886 1_4:+14799740 None:intergenic
TGTTGACCATATTTCTGTTA+TGG 0.306048 1_4:+14801971 None:intergenic
TCCAATGTGCTCATGGCTTT+AGG 0.313199 1_4:+14799858 None:intergenic
GGCTTCAAGTCTTGTCCTAT+TGG 0.313909 1_4:-14805032 Msa0152230:CDS
GTTTCATTGGTTTCAGTGAT+TGG 0.323563 1_4:+14800185 None:intergenic
AGTGATTTCATGTTTCATTT+GGG 0.327091 1_4:-14804250 Msa0152230:CDS
GGAAGCCGAAGTTTCTGATT+AGG 0.343868 1_4:+14803276 None:intergenic
GTTGAATCAAATGAAAGGTT+AGG 0.344994 1_4:+14803153 None:intergenic
AGCACTAGATATTTGAGTTT+AGG 0.345136 1_4:+14803255 None:intergenic
TCATATTGATCTCCCAGAAT+TGG 0.345295 1_4:-14804398 Msa0152230:CDS
CTCATTTGTTGACCAATGAT+TGG 0.345566 1_4:+14803726 None:intergenic
AATCGTGCCCTATCTGTATA+TGG 0.361711 1_4:+14805554 None:intergenic
CTCTAAGTTGGTTAAGATAG+AGG 0.362294 1_4:-14805254 Msa0152230:CDS
GTCCCAACATATATTCCATT+TGG 0.362922 1_4:+14804458 None:intergenic
AATAGACAAAGCTCTTGATA+TGG 0.363216 1_4:+14805504 None:intergenic
TGATATGGAGATTCAAAGAT+TGG 0.364476 1_4:-14799703 Msa0152230:CDS
GAGCAAGTACTGACGAGTTT+TGG 0.365030 1_4:+14804352 None:intergenic
GGTACCATGCAGAATGTTAA+TGG 0.366340 1_4:-14801007 Msa0152230:CDS
CTATTATCAGTTCTTCCAAT+AGG 0.366394 1_4:+14805017 None:intergenic
TGAACAATCTACATGATCTA+AGG 0.370884 1_4:-14803680 Msa0152230:CDS
ATGTAGATTGTTCAATTTCA+AGG 0.371157 1_4:+14803689 None:intergenic
TGTCAAAACTTTACAAATTG+AGG 0.374493 1_4:-14803616 Msa0152230:CDS
TATACAGATAGGGCACGATT+TGG 0.375399 1_4:-14805551 Msa0152230:CDS
GTACACTCAAGTGGTATCTA+AGG 0.376003 1_4:-14799622 Msa0152230:CDS
GAAATCACTAATAGAGTTGA+TGG 0.378308 1_4:+14804264 None:intergenic
CAATCCAACTCTTGAAATGA+TGG 0.381510 1_4:+14800630 None:intergenic
TGATGGGTGGTTAAAGTCTA+AGG 0.382424 1_4:-14799553 Msa0152230:CDS
TGAAGGATTACATAAAATAA+TGG 0.395099 1_4:-14803511 Msa0152230:CDS
CTTCATTTGAAGAGGATTCA+AGG 0.401513 1_4:-14805421 Msa0152230:CDS
TCATTTGGGTGCAAGACAAC+TGG 0.402802 1_4:-14804236 Msa0152230:CDS
CAAATAATCTTCCATGCAAC+TGG 0.409836 1_4:+14805137 None:intergenic
TGACATTAAGCTCCATGTTA+AGG 0.409961 1_4:+14799802 None:intergenic
CTTAATGTTCCTTGTTCCAT+AGG 0.413317 1_4:+14800771 None:intergenic
CACTGATCCGAGCCAACATA+TGG 0.414336 1_4:-14803214 Msa0152230:CDS
CAGAAAAGAAAGTTTCAAAC+TGG 0.418379 1_4:-14802163 Msa0152230:CDS
ACATTGATCGCGATGTTCAC+TGG 0.419850 1_4:-14802913 Msa0152230:CDS
ATGATCATGAGCTCTAACTT+TGG 0.421276 1_4:+14803354 None:intergenic
TGAAATATTTGACACTATAG+TGG 0.421709 1_4:-14802882 Msa0152230:CDS
CAGAGGTACCATATACAGAT+AGG 0.422017 1_4:-14805562 Msa0152230:CDS
AAAAGAGTATACTATTGATA+TGG 0.422211 1_4:-14799718 Msa0152230:CDS
TTTGAAGGAAACTTGAACCT+TGG 0.425344 1_4:-14805118 Msa0152230:CDS
AACAGTGGAACAAAGTCTTC+TGG 0.425546 1_4:-14802015 Msa0152230:CDS
TTATAATGTTCTTCAATGAA+TGG 0.426610 1_4:+14804563 None:intergenic
CACTCAGGAATTTCAACCTT+GGG 0.428308 1_4:+14804494 None:intergenic
ATAAAACCATAACAGAAATA+TGG 0.429406 1_4:-14801977 Msa0152230:CDS
AAAAGGAGCTTCTTTGTTCA+CGG 0.434556 1_4:-14802766 Msa0152230:CDS
GCTCTAACTTTGGAAACTCT+TGG 0.434584 1_4:+14803364 None:intergenic
CTTAATTGTTGCATTTGAAG+TGG 0.435377 1_4:+14805468 None:intergenic
TTGGAAGAACTGATAATAGA+AGG 0.435910 1_4:-14805013 Msa0152230:CDS
TGATCTAAGGTACACATTCA+TGG 0.436017 1_4:-14803667 Msa0152230:CDS
AGAGAGAATAAGAGCTTCAA+TGG 0.437621 1_4:-14800750 Msa0152230:CDS
GACTTAAAGAATATATTAGA+AGG 0.438378 1_4:-14803117 Msa0152230:intron
ATGATAAGTGCAACGAGCTT+CGG 0.438875 1_4:+14803432 None:intergenic
AAGTTAAATGCTCCAATTCT+GGG 0.442466 1_4:+14804386 None:intergenic
AGCCACGCGTCACGCTATTC+GGG 0.442591 1_4:+14804524 None:intergenic
GATCTTGGAGATTGTTTCCT+CGG 0.443080 1_4:+14801939 None:intergenic
CAGAGATTCTTCATTTGAAG+AGG 0.443889 1_4:-14805429 Msa0152230:CDS
GTCAAAACTTTACAAATTGA+GGG 0.448644 1_4:-14803615 Msa0152230:CDS
GTCTATGTTCACGCCTTCCA+CGG 0.450186 1_4:-14805053 Msa0152230:CDS
ATACAGATAGGGCACGATTT+GGG 0.452855 1_4:-14805550 Msa0152230:CDS
GTAAGATTGGAATGTTCATC+AGG 0.455772 1_4:+14800723 None:intergenic
TGGAAGCATATTCTCTAAGT+TGG 0.456824 1_4:-14805266 Msa0152230:CDS
TTGAATCAAATGAAAGGTTA+GGG 0.459511 1_4:+14803154 None:intergenic
GCCATTGCCTTATAATGTCT+TGG 0.459999 1_4:-14802130 Msa0152230:intron
TACCATCGGTAATTGATGAA+TGG 0.463834 1_4:+14802826 None:intergenic
CTAGATATGCAAGTTGTGGC+AGG 0.464178 1_4:+14803547 None:intergenic
ATTGTACGTCATGCGAAGTC+CGG 0.464991 1_4:-14805659 None:intergenic
TAGCCAAATGGAATATATGT+TGG 0.466684 1_4:-14804461 Msa0152230:CDS
AAACAAAACTCCTTCAAAGA+TGG 0.468085 1_4:+14804307 None:intergenic
AAGAACATTATAACAGATGT+TGG 0.469365 1_4:-14804553 Msa0152230:CDS
CCGCAACTAGTTGAAGCAAT+AGG 0.471525 1_4:-14805379 Msa0152230:CDS
TTGGTTAAGATAGAGGTTAG+AGG 0.471746 1_4:-14805247 Msa0152230:CDS
TGAAGTGGAACATGTTTCAT+TGG 0.472665 1_4:+14800172 None:intergenic
CTTGAAGCACATCCAATCAT+TGG 0.472705 1_4:-14803738 Msa0152230:CDS
AATGGAATAAGTAACGATCT+TGG 0.476236 1_4:+14801924 None:intergenic
TGTTCAAGATTGTAGCCAAA+TGG 0.476591 1_4:-14804473 Msa0152230:CDS
AATGTTAAAAGCTCTACAAA+TGG 0.477657 1_4:-14800696 Msa0152230:CDS
TTGCATGGAAGATTATTTGA+AGG 0.480190 1_4:-14805133 Msa0152230:CDS
GACCAAACTTTCTGAGACAT+TGG 0.482826 1_4:-14799742 Msa0152230:CDS
AATAGATGAACAAATTCCTA+TGG 0.487797 1_4:-14800787 Msa0152230:CDS
TATGGTACCTCTGCAATGTC+GGG 0.488001 1_4:+14805572 None:intergenic
AGTCCCATCATTTCAAGAGT+TGG 0.490384 1_4:-14800634 Msa0152230:CDS
GGTTGCTCGAACAATGTTGT+TGG 0.493626 1_4:-14804608 Msa0152230:CDS
AAAGGAGCTTCTTTGTTCAC+GGG 0.494109 1_4:-14802765 Msa0152230:intron
GGTTCAGTCAGCACCTCAAA+AGG 0.495338 1_4:-14802783 Msa0152230:CDS
ACTTGATTCCAATGTGCTCA+TGG 0.495608 1_4:+14799851 None:intergenic
AGCCAAATGGAATATATGTT+GGG 0.500992 1_4:-14804460 Msa0152230:CDS
TAGCTCATGCAAATGCTAGC+TGG 0.503345 1_4:-14799524 Msa0152230:CDS
AATCTCCATTTGAATCTGTC+CGG 0.505445 1_4:+14805640 None:intergenic
TGCTGTACATGATTCAAGAA+TGG 0.506729 1_4:-14802457 Msa0152230:CDS
CATTTATGTCACCAGTTGCA+TGG 0.508191 1_4:-14805148 Msa0152230:CDS
TGCTAGCTGGAAGATCTTGA+AGG 0.508504 1_4:-14799511 Msa0152230:CDS
TGCAACTCCATATGTTGGCT+CGG 0.512023 1_4:+14803207 None:intergenic
CCAATGGATTACCTTGGAAG+AGG 0.513422 1_4:+14800569 None:intergenic
TCATCAATTACCGATGGTAC+AGG 0.516297 1_4:-14802822 Msa0152230:CDS
GTTGAATGAAACCTCTTCCA+AGG 0.516753 1_4:-14800580 Msa0152230:intron
TTAATTGTTGCATTTGAAGT+GGG 0.521954 1_4:+14805469 None:intergenic
CATTGATCGCGATGTTCACT+GGG 0.524368 1_4:-14802912 Msa0152230:CDS
CTCCTTCAAAGATGGATATG+TGG 0.524599 1_4:+14804315 None:intergenic
ATTTGACACTATAGTGGAAG+AGG 0.525771 1_4:-14802876 Msa0152230:CDS
TCCTCAAAGACTTCGCAAAA+CGG 0.526963 1_4:-14799905 Msa0152230:CDS
ACAGGAAGTTCAAGATGTGC+AGG 0.528907 1_4:-14802804 Msa0152230:CDS
GATTGTAAATTCTTTAGCAA+GGG 0.534940 1_4:-14799955 Msa0152230:CDS
ATATGGTACCTCTGCAATGT+CGG 0.535663 1_4:+14805571 None:intergenic
TAAGATAGAGGTTAGAGGCA+TGG 0.536210 1_4:-14805242 Msa0152230:CDS
TTGTTCATCCCTTGCTCCAG+TGG 0.536738 1_4:-14800610 Msa0152230:CDS
GATCTAAGGTACACATTCAT+GGG 0.538155 1_4:-14803666 Msa0152230:CDS
CATATGAGTATGTGAGCAGT+AGG 0.539421 1_4:-14801045 Msa0152230:CDS
AGGTGAAAAGCAATCAACTT+TGG 0.540218 1_4:+14800094 None:intergenic
AAGCATATCAGTTGAGATTG+AGG 0.540937 1_4:+14803456 None:intergenic
TGGCTCGGATCAGTGAGGTT+CGG 0.546545 1_4:+14803222 None:intergenic
TGATGGATATCTGAAGGAGT+TGG 0.547987 1_4:+14802387 None:intergenic
TCATTCAACAAAGCAACCAC+TGG 0.548206 1_4:+14800594 None:intergenic
GAATCTCTGCTCTTTCCACC+AGG 0.549355 1_4:+14805443 None:intergenic
CAAAGCAACCACTGGAGCAA+GGG 0.549704 1_4:+14800602 None:intergenic
AATCCAACTCTTGAAATGAT+GGG 0.549911 1_4:+14800631 None:intergenic
TGCCACATATCCATCTTTGA+AGG 0.553085 1_4:-14804317 Msa0152230:CDS
TGATTCAACAACTACTCTTG+AGG 0.554252 1_4:-14803139 Msa0152230:CDS
CCTATTGCTTCAACTAGTTG+CGG 0.556993 1_4:+14805379 None:intergenic
CGCGTGGCTCAGTCTTCCCA+AGG 0.560641 1_4:-14804510 Msa0152230:CDS
TCTTTGCATTGATGATGAAG+TGG 0.561958 1_4:+14800157 None:intergenic
GGATTGTAAATTCTTTAGCA+AGG 0.562853 1_4:-14799956 Msa0152230:CDS
ACACTCAGGAATTTCAACCT+TGG 0.565058 1_4:+14804493 None:intergenic
AGATTCCTAATCAGAAACTT+CGG 0.565853 1_4:-14803281 Msa0152230:CDS
TAAAATAATGGAAGACAATG+AGG 0.568733 1_4:-14803499 Msa0152230:CDS
GAACTGAAATCATGCACTGA+TGG 0.570054 1_4:-14799570 Msa0152230:CDS
TCACATTGATGGATATCTGA+AGG 0.570389 1_4:+14802381 None:intergenic
TGGTACCTCAGTGGATGTGT+TGG 0.570857 1_4:+14804213 None:intergenic
TTTGGGATTATATCATTCAG+TGG 0.571184 1_4:-14805533 Msa0152230:CDS
ATTTCCATTAACATTCTGCA+TGG 0.571294 1_4:+14801003 None:intergenic
AATAGAGTTGATGGTAAACT+CGG 0.575503 1_4:+14804273 None:intergenic
TCTTGAACTTCCTGTACCAT+CGG 0.578216 1_4:+14802812 None:intergenic
ATAGAGAACTCAGACATTCA+AGG 0.578552 1_4:-14803771 Msa0152230:CDS
GGCTACAATCTTGAACACTC+AGG 0.580798 1_4:+14804479 None:intergenic
ACAAAGCAACCACTGGAGCA+AGG 0.580828 1_4:+14800601 None:intergenic
TAGAGAACTCAGACATTCAA+GGG 0.581304 1_4:-14803770 Msa0152230:CDS
ATTTCTAGATATGCAAGTTG+TGG 0.583283 1_4:+14803543 None:intergenic
GCTTCAATTCTATAGGACAT+AGG 0.586676 1_4:-14803834 Msa0152230:intron
TAGAACAAATCTCAAGCTTG+AGG 0.589433 1_4:+14805332 None:intergenic
GAAGTCCGGACAGATTCAAA+TGG 0.590261 1_4:-14805645 Msa0152230:CDS
AACAAATCTCAAGCTTGAGG+TGG 0.595250 1_4:+14805335 None:intergenic
CTAGAAATCAGCAACTGTGA+AGG 0.596744 1_4:-14803528 Msa0152230:CDS
CCAAAGAAGTCAGAAGGAGG+TGG 0.597249 1_4:+14805193 None:intergenic
TCCTAAAGCCATGAGCACAT+TGG 0.597862 1_4:-14799859 Msa0152230:CDS
CATTCTGCAACTCCATATGT+TGG 0.598398 1_4:+14803202 None:intergenic
ACAAGACTTGAAGCCGTGGA+AGG 0.599814 1_4:+14805040 None:intergenic
AACTGAAATCATGCACTGAT+GGG 0.600723 1_4:-14799569 Msa0152230:CDS
TGAATTCACATAGGAGCTGG+TGG 0.601621 1_4:-14802235 Msa0152230:intron
ACTGATAATAGAAGGTTGCA+AGG 0.603259 1_4:-14805005 Msa0152230:CDS
TGATTAGGAATCTCATCATG+TGG 0.606098 1_4:+14803291 None:intergenic
ACTTGATAAGTACACTCAAG+TGG 0.612591 1_4:-14799631 Msa0152230:CDS
AGAGGTACCATATACAGATA+GGG 0.613226 1_4:-14805561 Msa0152230:CDS
CTTTGGAAACTCTTGGAATG+TGG 0.613449 1_4:+14803371 None:intergenic
CTTAATGTCAAGTTGAGTGA+AGG 0.614077 1_4:-14799789 Msa0152230:CDS
AAATGCAACAATTAAGGACC+TGG 0.618320 1_4:-14805461 Msa0152230:CDS
TAGTTGTTGAATCAAATGAA+AGG 0.619418 1_4:+14803148 None:intergenic
AAGACAATGAGGAAAATCAA+AGG 0.619508 1_4:-14803488 Msa0152230:CDS
AAGTCTTCTGGAGTGTCCTG+AGG 0.623279 1_4:-14802003 Msa0152230:CDS
ACCAAGACATTATAAGGCAA+TGG 0.623842 1_4:+14802129 None:intergenic
ATGTTACCAAAGAAGTCAGA+AGG 0.631696 1_4:+14805187 None:intergenic
CAACTAGTTGAAGCAATAGG+AGG 0.633596 1_4:-14805376 Msa0152230:CDS
GAAGCACCTTAATTCTACCA+AGG 0.634270 1_4:+14805101 None:intergenic
AACCATTCATCAATTACCGA+TGG 0.637111 1_4:-14802828 Msa0152230:CDS
AGTCAGAAGGAGGTGGACCA+TGG 0.640328 1_4:+14805200 None:intergenic
AAACATGTCTTCTAACTGAG+AGG 0.640867 1_4:+14803323 None:intergenic
TGCAACAATTAAGGACCTGG+TGG 0.641820 1_4:-14805458 Msa0152230:CDS
GACCCGAATAGCGTGACGCG+TGG 0.642527 1_4:-14804526 Msa0152230:CDS
ATATCTGAAGGAGTTGGACA+AGG 0.643862 1_4:+14802393 None:intergenic
AAAAGTTATTAGTATCAATG+AGG 0.648664 1_4:+14805299 None:intergenic
TACTTATGAGAACCTTAACA+TGG 0.650102 1_4:-14799814 Msa0152230:CDS
TAGAAGTGATAACATTAACA+AGG 0.651825 1_4:-14802416 Msa0152230:CDS
TCAGTGTACTAAACAAACAG+TGG 0.652891 1_4:-14802030 Msa0152230:intron
TAGGACAAGACTTGAAGCCG+TGG 0.653378 1_4:+14805036 None:intergenic
AAAACGGAAAGGTTTGGGAG+AGG 0.662395 1_4:-14799592 Msa0152230:CDS
GAACAAATTCCTATGGAACA+AGG 0.668234 1_4:-14800780 Msa0152230:CDS
AATTTGAAAGAACTGTGCCA+TGG 0.669535 1_4:-14805217 Msa0152230:CDS
ATATGTGGCATTGTAGCGCA+TGG 0.671927 1_4:+14804330 None:intergenic
ATAGAGTTGATGGTAAACTC+GGG 0.676656 1_4:+14804274 None:intergenic
TGAAATCATGCACTGATGGG+TGG 0.682346 1_4:-14799566 Msa0152230:CDS
ACATTATCCCGACATTGCAG+AGG 0.685833 1_4:-14805579 Msa0152230:CDS
GAATGTGACATACAGCATTG+TGG 0.694171 1_4:-14803184 Msa0152230:CDS
TTACCAAAGAAGTCAGAAGG+AGG 0.707596 1_4:+14805190 None:intergenic
AAACATAATAGCATACGAGG+AGG 0.710656 1_4:-14804975 Msa0152230:CDS
GAGAAACATAATAGCATACG+AGG 0.714479 1_4:-14804978 Msa0152230:CDS
GGTCAACAAACTCAGAACCG+AGG 0.714940 1_4:-14801956 Msa0152230:CDS
TATGTTGGCTCGGATCAGTG+AGG 0.720828 1_4:+14803217 None:intergenic
ACATAATAATAATGACACAG+AGG 0.745772 1_4:-14804422 Msa0152230:CDS
ACTGGCCAACACATCCACTG+AGG 0.764018 1_4:-14804218 Msa0152230:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAATAATTAATATAGT+TGG + chr1_4:14803227-14803246 None:intergenic 10.0%
!! GAAAAATATGTATAATAAAT+AGG + chr1_4:14803260-14803279 None:intergenic 10.0%
!! TACTAAAATTAACTTAAAAA+TGG + chr1_4:14803569-14803588 None:intergenic 10.0%
!!! ATGAATTTTTATACTTTTTA+TGG + chr1_4:14803696-14803715 None:intergenic 10.0%
!! GATAATGATAAAAAAGTTTA+TGG - chr1_4:14800114-14800133 Msa0152230:CDS 15.0%
!! ATTAACAATCATGATAAAAT+AGG + chr1_4:14800891-14800910 None:intergenic 15.0%
!!! TATTGTTATTGTAATTTTCA+CGG - chr1_4:14801979-14801998 Msa0152230:CDS 15.0%
!! AATTATAGCAAAAAAGAAAA+GGG + chr1_4:14802062-14802081 None:intergenic 15.0%
!! AAATTATAGCAAAAAAGAAA+AGG + chr1_4:14802063-14802082 None:intergenic 15.0%
!! ACAAAAAAAAATTCTCAAAA+GGG + chr1_4:14803176-14803195 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr1_4:14803536-14803555 None:intergenic 15.0%
!!! ATATGAGTTTACTTTAAAAT+AGG - chr1_4:14803819-14803838 Msa0152230:CDS 15.0%
!!! TATGAGTTTACTTTAAAATA+GGG - chr1_4:14803820-14803839 Msa0152230:CDS 15.0%
!! AAACAAATATGATATAAAAC+AGG + chr1_4:14804192-14804211 None:intergenic 15.0%
!! CCAGAAATAATTAAATTTAT+CGG + chr1_4:14804532-14804551 None:intergenic 15.0%
!!! ATAAATTTAATTATTTCTGG+TGG - chr1_4:14804532-14804551 Msa0152230:CDS 15.0%
!!! TTTGAAATTGACAAATAAAT+AGG - chr1_4:14804675-14804694 Msa0152230:intron 15.0%
!! AAAAAGTTACTCAATTTAAA+TGG + chr1_4:14804724-14804743 None:intergenic 15.0%
!! AATGTTGTATTTGTCAAAAA+TGG + chr1_4:14799434-14799453 None:intergenic 20.0%
!! AAAAGTTATTAGTATCAATG+AGG + chr1_4:14799732-14799751 None:intergenic 20.0%
!!! TTTTTATCATTATCATCATG+TGG + chr1_4:14800108-14800127 None:intergenic 20.0%
!! CTGTGATTATAAATTCTAAT+TGG + chr1_4:14800185-14800204 None:intergenic 20.0%
!! TTATAATGTTCTTCAATGAA+TGG + chr1_4:14800468-14800487 None:intergenic 20.0%
!! GTACCAAAATTCTTATATTA+CGG - chr1_4:14800832-14800851 Msa0152230:intron 20.0%
!!! TTTGTAAAGTTTTGACATTT+TGG + chr1_4:14801409-14801428 None:intergenic 20.0%
!! TGAAGGATTACATAAAATAA+TGG - chr1_4:14801517-14801536 Msa0152230:intron 20.0%
!! GACTTAAAGAATATATTAGA+AGG - chr1_4:14801911-14801930 Msa0152230:CDS 20.0%
!!! AAAATATTTCTTGCTTTAGA+AGG + chr1_4:14802017-14802036 None:intergenic 20.0%
!! ATATAATTACATCGCTTATA+TGG + chr1_4:14802505-14802524 None:intergenic 20.0%
!!! ATGTCTTTTTTTTGAAGAAT+TGG - chr1_4:14802734-14802753 Msa0152230:intron 20.0%
!! ATAAAACCATAACAGAAATA+TGG - chr1_4:14803051-14803070 Msa0152230:intron 20.0%
!! GACAAAAAAAAATTCTCAAA+AGG + chr1_4:14803177-14803196 None:intergenic 20.0%
!! TTAAGAGTTAAATATGTCTT+TGG - chr1_4:14803449-14803468 Msa0152230:CDS 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr1_4:14803911-14803930 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr1_4:14803537-14803556 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr1_4:14803540-14803559 Msa0152230:CDS 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG - chr1_4:14803910-14803929 Msa0152230:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr1_4:14803911-14803930 Msa0152230:intron 20.0%
!!! ATTAGGGTTAAATATGTTTT+TGG + chr1_4:14803938-14803957 None:intergenic 20.0%
!!! ATTTAACCCTAATATTTTTC+TGG - chr1_4:14803945-14803964 Msa0152230:intron 20.0%
!! ATTCAACCAGAAAAATATTA+GGG + chr1_4:14803954-14803973 None:intergenic 20.0%
!! TATTCAACCAGAAAAATATT+AGG + chr1_4:14803955-14803974 None:intergenic 20.0%
!! AGTAGGAAAAATAATATAGT+TGG - chr1_4:14804000-14804019 Msa0152230:intron 20.0%
!!! CAAAAGAAAGAGTATAATTT+TGG + chr1_4:14804148-14804167 None:intergenic 20.0%
!!! TTTAACATTTTGTGTAAGAT+TGG + chr1_4:14804321-14804340 None:intergenic 20.0%
!! CCGATAAATTTAATTATTTC+TGG - chr1_4:14804529-14804548 Msa0152230:CDS 20.0%
!! ACAAGAAAAAATTGAAAACT+TGG - chr1_4:14805262-14805281 Msa0152230:CDS 20.0%
!!! AAAAGAGTATACTATTGATA+TGG - chr1_4:14805310-14805329 Msa0152230:CDS 20.0%
!! TATCTAAGGATTATGAAAAA+CGG - chr1_4:14805420-14805439 Msa0152230:CDS 20.0%
!! TTAATTGTTGCATTTGAAGT+GGG + chr1_4:14799562-14799581 None:intergenic 25.0%
!! AATAACTTTTCATCTTCTGT+TGG - chr1_4:14799742-14799761 Msa0152230:CDS 25.0%
!! AAGTCAAAAGTTTTCAACTT+TGG + chr1_4:14800150-14800169 None:intergenic 25.0%
!!! AAAAGTTTTGTTCAGTCTAT+CGG - chr1_4:14800399-14800418 Msa0152230:intron 25.0%
! AAGAACATTATAACAGATGT+TGG - chr1_4:14800475-14800494 Msa0152230:intron 25.0%
! ACATAATAATAATGACACAG+AGG - chr1_4:14800606-14800625 Msa0152230:CDS 25.0%
! TAGTGATTTCATGTTTCATT+TGG - chr1_4:14800777-14800796 Msa0152230:CDS 25.0%
! AGTGATTTCATGTTTCATTT+GGG - chr1_4:14800778-14800797 Msa0152230:CDS 25.0%
!! CTACCGTAATATAAGAATTT+TGG + chr1_4:14800838-14800857 None:intergenic 25.0%
! GTTAATGAAGTTCAAATTGA+TGG + chr1_4:14800936-14800955 None:intergenic 25.0%
! GATGGTTAATGAAAATAACA+AGG + chr1_4:14800976-14800995 None:intergenic 25.0%
!!! AGTTTCAAAGGTATTTCTTA+CGG + chr1_4:14801090-14801109 None:intergenic 25.0%
! ATGTAGATTGTTCAATTTCA+AGG + chr1_4:14801342-14801361 None:intergenic 25.0%
! TGTCAAAACTTTACAAATTG+AGG - chr1_4:14801412-14801431 Msa0152230:intron 25.0%
! GTCAAAACTTTACAAATTGA+GGG - chr1_4:14801413-14801432 Msa0152230:intron 25.0%
!! TAAAATAATGGAAGACAATG+AGG - chr1_4:14801529-14801548 Msa0152230:intron 25.0%
! TTGAATCAAATGAAAGGTTA+GGG + chr1_4:14801877-14801896 None:intergenic 25.0%
! TAGTTGTTGAATCAAATGAA+AGG + chr1_4:14801883-14801902 None:intergenic 25.0%
! TGAAATATTTGACACTATAG+TGG - chr1_4:14802146-14802165 Msa0152230:CDS 25.0%
!! AGCGATGTAATTATATCTTT+TGG - chr1_4:14802509-14802528 Msa0152230:intron 25.0%
! TAGAAGTGATAACATTAACA+AGG - chr1_4:14802612-14802631 Msa0152230:intron 25.0%
!! TCAAAAGGGTCTTATAATTA+GGG + chr1_4:14803162-14803181 None:intergenic 25.0%
! ATATAGTTGGAAATAGCAAA+GGG + chr1_4:14803214-14803233 None:intergenic 25.0%
! AATATAGTTGGAAATAGCAA+AGG + chr1_4:14803215-14803234 None:intergenic 25.0%
!!! ATTCCCGTTATTTTTTCAAA+AGG - chr1_4:14803396-14803415 Msa0152230:CDS 25.0%
!!! TTCCCGTTATTTTTTCAAAA+GGG - chr1_4:14803397-14803416 Msa0152230:CDS 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG + chr1_4:14803477-14803496 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr1_4:14803880-14803899 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr1_4:14803879-14803898 None:intergenic 25.0%
!! AAATTTTCCAACTTCACTTT+TGG + chr1_4:14803847-14803866 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr1_4:14803879-14803898 Msa0152230:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr1_4:14803880-14803899 Msa0152230:intron 25.0%
!! TTTCTTTTGAATGTGTTCAA+TGG - chr1_4:14804159-14804178 Msa0152230:intron 25.0%
! AATAGATGAACAAATTCCTA+TGG - chr1_4:14804241-14804260 Msa0152230:CDS 25.0%
! AATGTTAAAAGCTCTACAAA+TGG - chr1_4:14804332-14804351 Msa0152230:CDS 25.0%
! GAAAACTAAAAAAGAACCAA+TGG + chr1_4:14804478-14804497 None:intergenic 25.0%
! TCTCTGCAATAAATAGTTAA+AGG - chr1_4:14804615-14804634 Msa0152230:CDS 25.0%
! GATTGTAAATTCTTTAGCAA+GGG - chr1_4:14805073-14805092 Msa0152230:CDS 25.0%
!! ATGAAATATTTGGCTTATTC+AGG + chr1_4:14805643-14805662 None:intergenic 25.0%
! TTTGGGATTATATCATTCAG+TGG - chr1_4:14799495-14799514 Msa0152230:CDS 30.0%
AATAGACAAAGCTCTTGATA+TGG + chr1_4:14799527-14799546 None:intergenic 30.0%
CTTAATTGTTGCATTTGAAG+TGG + chr1_4:14799563-14799582 None:intergenic 30.0%
CACTTCAAATGCAACAATTA+AGG - chr1_4:14799561-14799580 Msa0152230:CDS 30.0%
TTGCATGGAAGATTATTTGA+AGG - chr1_4:14799895-14799914 Msa0152230:CDS 30.0%
CTATTATCAGTTCTTCCAAT+AGG + chr1_4:14800014-14800033 None:intergenic 30.0%
TTGGAAGAACTGATAATAGA+AGG - chr1_4:14800015-14800034 Msa0152230:CDS 30.0%
GTTGGAAGAATTGAGAATTA+AGG - chr1_4:14800438-14800457 Msa0152230:intron 30.0%
TAGCCAAATGGAATATATGT+TGG - chr1_4:14800567-14800586 Msa0152230:intron 30.0%
AGCCAAATGGAATATATGTT+GGG - chr1_4:14800568-14800587 Msa0152230:intron 30.0%
AAGTTAAATGCTCCAATTCT+GGG + chr1_4:14800645-14800664 None:intergenic 30.0%
AAAGTTAAATGCTCCAATTC+TGG + chr1_4:14800646-14800665 None:intergenic 30.0%
AAACAAAACTCCTTCAAAGA+TGG + chr1_4:14800724-14800743 None:intergenic 30.0%
!!! ATCTTTGAAGGAGTTTTGTT+TGG - chr1_4:14800723-14800742 Msa0152230:CDS 30.0%
!! AATAGAGTTGATGGTAAACT+CGG + chr1_4:14800758-14800777 None:intergenic 30.0%
GAAATCACTAATAGAGTTGA+TGG + chr1_4:14800767-14800786 None:intergenic 30.0%
TGATGGTTAATTACGTTCAA+TGG + chr1_4:14800998-14801017 None:intergenic 30.0%
! ATTTTCGTCGTCAATTTTGA+TGG + chr1_4:14801015-14801034 None:intergenic 30.0%
AGTGTATGCTTCAATTCTAT+AGG - chr1_4:14801187-14801206 Msa0152230:intron 30.0%
TGAACAATCTACATGATCTA+AGG - chr1_4:14801348-14801367 Msa0152230:intron 30.0%
!!! TGGAGGCTCATAAAATTTTT+TGG + chr1_4:14801389-14801408 None:intergenic 30.0%
!! GTAAAGTTTTGACATTTTGG+AGG + chr1_4:14801406-14801425 None:intergenic 30.0%
! ATTTCTAGATATGCAAGTTG+TGG + chr1_4:14801488-14801507 None:intergenic 30.0%
AAGACAATGAGGAAAATCAA+AGG - chr1_4:14801540-14801559 Msa0152230:intron 30.0%
AGATTCCTAATCAGAAACTT+CGG - chr1_4:14801747-14801766 Msa0152230:intron 30.0%
! AGCACTAGATATTTGAGTTT+AGG + chr1_4:14801776-14801795 None:intergenic 30.0%
GTTGAATCAAATGAAAGGTT+AGG + chr1_4:14801878-14801897 None:intergenic 30.0%
TGATGAATGGTTTCTGATAT+TGG + chr1_4:14802192-14802211 None:intergenic 30.0%
! TTGAAGTTTTCAATCATTGC+TGG - chr1_4:14802327-14802346 Msa0152230:intron 30.0%
!! CTTGTGTTATTTCACATTGA+TGG + chr1_4:14802661-14802680 None:intergenic 30.0%
CAATGTGAAATAACACAAGT+TGG - chr1_4:14802662-14802681 Msa0152230:intron 30.0%
TTAACAACTAGTGCTGTATA+TGG - chr1_4:14802705-14802724 Msa0152230:intron 30.0%
CAGAAAAGAAAGTTTCAAAC+TGG - chr1_4:14802865-14802884 Msa0152230:CDS 30.0%
AAACTCACCAAGACATTATA+AGG + chr1_4:14802908-14802927 None:intergenic 30.0%
! TGTTGACCATATTTCTGTTA+TGG + chr1_4:14803060-14803079 None:intergenic 30.0%
AATGGAATAAGTAACGATCT+TGG + chr1_4:14803107-14803126 None:intergenic 30.0%
!! TGTGAAGATGCTTTTTGTAA+TGG + chr1_4:14803125-14803144 None:intergenic 30.0%
!! ATTACAAAAAGCATCTTCAC+AGG - chr1_4:14803124-14803143 Msa0152230:CDS 30.0%
! CTCAAAAGGGTCTTATAATT+AGG + chr1_4:14803163-14803182 None:intergenic 30.0%
TATAGTTGGAAATAGCAAAG+GGG + chr1_4:14803213-14803232 None:intergenic 30.0%
!! GTTTTATCCTTTAAGAGAGA+GGG + chr1_4:14803323-14803342 None:intergenic 30.0%
!! AGTTTTATCCTTTAAGAGAG+AGG + chr1_4:14803324-14803343 None:intergenic 30.0%
! AATAACGGGAATTAAGATAG+TGG + chr1_4:14803388-14803407 None:intergenic 30.0%
!! GACCCTTTTGAAAAAATAAC+GGG + chr1_4:14803402-14803421 None:intergenic 30.0%
!! GGACCCTTTTGAAAAAATAA+CGG + chr1_4:14803403-14803422 None:intergenic 30.0%
TTCAAAAGGGTCCTATAATT+AGG - chr1_4:14803410-14803429 Msa0152230:CDS 30.0%
TCAAAAGGGTCCTATAATTA+GGG - chr1_4:14803411-14803430 Msa0152230:CDS 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr1_4:14803521-14803540 None:intergenic 30.0%
! TGAAGTTGGAAAATTTTCGA+GGG - chr1_4:14803851-14803870 Msa0152230:intron 30.0%
ATTTCCATTAACATTCTGCA+TGG + chr1_4:14804028-14804047 None:intergenic 30.0%
AATCCAACTCTTGAAATGAT+GGG + chr1_4:14804400-14804419 None:intergenic 30.0%
! ATGTTTTCAACAATGTAGAG+AGG - chr1_4:14805051-14805070 Msa0152230:CDS 30.0%
GGATTGTAAATTCTTTAGCA+AGG - chr1_4:14805072-14805091 Msa0152230:CDS 30.0%
TACTTATGAGAACCTTAACA+TGG - chr1_4:14805214-14805233 Msa0152230:CDS 30.0%
TGATATGGAGATTCAAAGAT+TGG - chr1_4:14805325-14805344 Msa0152230:CDS 30.0%
AAGGATTATGAAAAACGGAA+AGG - chr1_4:14805425-14805444 Msa0152230:CDS 30.0%
TTATGAAAAACGGAAAGGTT+TGG - chr1_4:14805430-14805449 Msa0152230:CDS 30.0%
TATGAAAAACGGAAAGGTTT+GGG - chr1_4:14805431-14805450 Msa0152230:CDS 30.0%
AATCTCCATTTGAATCTGTC+CGG + chr1_4:14799391-14799410 None:intergenic 35.0%
!! AGAGGTACCATATACAGATA+GGG - chr1_4:14799467-14799486 Msa0152230:three_prime_UTR 35.0%
AAATGCAACAATTAAGGACC+TGG - chr1_4:14799567-14799586 Msa0152230:CDS 35.0%
CAGAGATTCTTCATTTGAAG+AGG - chr1_4:14799599-14799618 Msa0152230:CDS 35.0%
CTTCATTTGAAGAGGATTCA+AGG - chr1_4:14799607-14799626 Msa0152230:CDS 35.0%
TAGAACAAATCTCAAGCTTG+AGG + chr1_4:14799699-14799718 None:intergenic 35.0%
! TGGAAGCATATTCTCTAAGT+TGG - chr1_4:14799762-14799781 Msa0152230:CDS 35.0%
!! CTCTAAGTTGGTTAAGATAG+AGG - chr1_4:14799774-14799793 Msa0152230:CDS 35.0%
TTGGTTAAGATAGAGGTTAG+AGG - chr1_4:14799781-14799800 Msa0152230:CDS 35.0%
AATTTGAAAGAACTGTGCCA+TGG - chr1_4:14799811-14799830 Msa0152230:CDS 35.0%
ATGTTACCAAAGAAGTCAGA+AGG + chr1_4:14799844-14799863 None:intergenic 35.0%
CAAATAATCTTCCATGCAAC+TGG + chr1_4:14799894-14799913 None:intergenic 35.0%
TTTGAAGGAAACTTGAACCT+TGG - chr1_4:14799910-14799929 Msa0152230:CDS 35.0%
CTTGAACCTTGGTAGAATTA+AGG - chr1_4:14799921-14799940 Msa0152230:CDS 35.0%
ACTGATAATAGAAGGTTGCA+AGG - chr1_4:14800023-14800042 Msa0152230:CDS 35.0%
GAGAAACATAATAGCATACG+AGG - chr1_4:14800050-14800069 Msa0152230:CDS 35.0%
AAACATAATAGCATACGAGG+AGG - chr1_4:14800053-14800072 Msa0152230:CDS 35.0%
!! TGTCTCAAAAGGCATTTAGA+AGG + chr1_4:14800225-14800244 None:intergenic 35.0%
TGTTCAAGATTGTAGCCAAA+TGG - chr1_4:14800555-14800574 Msa0152230:intron 35.0%
GTCCCAACATATATTCCATT+TGG + chr1_4:14800573-14800592 None:intergenic 35.0%
TCATATTGATCTCCCAGAAT+TGG - chr1_4:14800630-14800649 Msa0152230:CDS 35.0%
!!! TGAAGGAGTTTTGTTTGGAA+AGG - chr1_4:14800728-14800747 Msa0152230:CDS 35.0%
!! ATAGAGTTGATGGTAAACTC+GGG + chr1_4:14800757-14800776 None:intergenic 35.0%
!! TAAGAATTTTGGTACCTCAG+TGG + chr1_4:14800827-14800846 None:intergenic 35.0%
GGTTAATTACGTTCAATGGA+TGG + chr1_4:14800994-14801013 None:intergenic 35.0%
AGCATTGTATTGAAGCTATG+TGG + chr1_4:14801113-14801132 None:intergenic 35.0%
CATAGCTTCAATACAATGCT+TGG - chr1_4:14801113-14801132 Msa0152230:intron 35.0%
TCCACACATCTCCTAAATTT+GGG - chr1_4:14801136-14801155 Msa0152230:intron 35.0%
ACGAGAAACAACCCAAATTT+AGG + chr1_4:14801150-14801169 None:intergenic 35.0%
GCTTCAATTCTATAGGACAT+AGG - chr1_4:14801194-14801213 Msa0152230:intron 35.0%
ATAGAGAACTCAGACATTCA+AGG - chr1_4:14801257-14801276 Msa0152230:intron 35.0%
TAGAGAACTCAGACATTCAA+GGG - chr1_4:14801258-14801277 Msa0152230:intron 35.0%
TCAGACATTCAAGGGATATT+TGG - chr1_4:14801266-14801285 Msa0152230:intron 35.0%
! CTCATTTGTTGACCAATGAT+TGG + chr1_4:14801305-14801324 None:intergenic 35.0%
! TGATCTAAGGTACACATTCA+TGG - chr1_4:14801361-14801380 Msa0152230:intron 35.0%
! GATCTAAGGTACACATTCAT+GGG - chr1_4:14801362-14801381 Msa0152230:intron 35.0%
AAGCATATCAGTTGAGATTG+AGG + chr1_4:14801575-14801594 None:intergenic 35.0%
! AGATGAGACTTTTCAAACTG+TGG + chr1_4:14801631-14801650 None:intergenic 35.0%
! ATGATCATGAGCTCTAACTT+TGG + chr1_4:14801677-14801696 None:intergenic 35.0%
AAACATGTCTTCTAACTGAG+AGG + chr1_4:14801708-14801727 None:intergenic 35.0%
TGATTAGGAATCTCATCATG+TGG + chr1_4:14801740-14801759 None:intergenic 35.0%
TGATTCAACAACTACTCTTG+AGG - chr1_4:14801889-14801908 Msa0152230:intron 35.0%
TAGCAAAAAAGAAAAGGGAG+TGG + chr1_4:14802057-14802076 None:intergenic 35.0%
! ATTTGACACTATAGTGGAAG+AGG - chr1_4:14802152-14802171 Msa0152230:CDS 35.0%
AACCATTCATCAATTACCGA+TGG - chr1_4:14802200-14802219 Msa0152230:CDS 35.0%
TACCATCGGTAATTGATGAA+TGG + chr1_4:14802205-14802224 None:intergenic 35.0%
AAAAGGAGCTTCTTTGTTCA+CGG - chr1_4:14802262-14802281 Msa0152230:intron 35.0%
TGCTGTACATGATTCAAGAA+TGG - chr1_4:14802571-14802590 Msa0152230:intron 35.0%
! TCACATTGATGGATATCTGA+AGG + chr1_4:14802650-14802669 None:intergenic 35.0%
GTGAATTCATGACGAAGAAA+GGG + chr1_4:14802782-14802801 None:intergenic 35.0%
TGTGAATTCATGACGAAGAA+AGG + chr1_4:14802783-14802802 None:intergenic 35.0%
TCTTCGTCATGAATTCACAT+AGG - chr1_4:14802784-14802803 Msa0152230:CDS 35.0%
ACCAAGACATTATAAGGCAA+TGG + chr1_4:14802902-14802921 None:intergenic 35.0%
GTACACTGAAGGAATACAAA+AGG + chr1_4:14802987-14803006 None:intergenic 35.0%
CTGTTTGTTTAGTACACTGA+AGG + chr1_4:14802998-14803017 None:intergenic 35.0%
TCAGTGTACTAAACAAACAG+TGG - chr1_4:14802998-14803017 Msa0152230:intron 35.0%
! GCAAAGGGGTCTTATAAAAA+GGG + chr1_4:14803199-14803218 None:intergenic 35.0%
! AGCAAAGGGGTCTTATAAAA+AGG + chr1_4:14803200-14803219 None:intergenic 35.0%
! GTGAAGTTGGAAAATTTTCG+AGG - chr1_4:14803850-14803869 Msa0152230:intron 35.0%
GAGGGACTAAAATGAAAAGT+TGG - chr1_4:14803898-14803917 Msa0152230:intron 35.0%
! GTAAGTTCACCATGTCATTT+AGG - chr1_4:14804084-14804103 Msa0152230:intron 35.0%
! AAAGAGTTTTACACTGTCTG+TGG + chr1_4:14804111-14804130 None:intergenic 35.0%
!!! TTTGTTTTAGTTGCCACAGT+TGG - chr1_4:14804205-14804224 Msa0152230:intron 35.0%
!! GATTGTTTTTCAACCAACTG+TGG + chr1_4:14804221-14804240 None:intergenic 35.0%
GAACAAATTCCTATGGAACA+AGG - chr1_4:14804248-14804267 Msa0152230:CDS 35.0%
CTTAATGTTCCTTGTTCCAT+AGG + chr1_4:14804260-14804279 None:intergenic 35.0%
AGAGAGAATAAGAGCTTCAA+TGG - chr1_4:14804278-14804297 Msa0152230:CDS 35.0%
GTAAGATTGGAATGTTCATC+AGG + chr1_4:14804308-14804327 None:intergenic 35.0%
CAATCCAACTCTTGAAATGA+TGG + chr1_4:14804401-14804420 None:intergenic 35.0%
!! AAAGAACCAATGGATTACCT+TGG + chr1_4:14804468-14804487 None:intergenic 35.0%
CATTGTTTGCATGCATTTGA+AGG - chr1_4:14804759-14804778 Msa0152230:intron 35.0%
!! GTTTCATTGGTTTCAGTGAT+TGG + chr1_4:14804846-14804865 None:intergenic 35.0%
TGAAGTGGAACATGTTTCAT+TGG + chr1_4:14804859-14804878 None:intergenic 35.0%
!! TCTTTGCATTGATGATGAAG+TGG + chr1_4:14804874-14804893 None:intergenic 35.0%
AGGTGAAAAGCAATCAACTT+TGG + chr1_4:14804937-14804956 None:intergenic 35.0%
!!! GAACTTGAGTTTTGAGTATC+AGG + chr1_4:14804957-14804976 None:intergenic 35.0%
TGACATTAAGCTCCATGTTA+AGG + chr1_4:14805229-14805248 None:intergenic 35.0%
!! CTTAATGTCAAGTTGAGTGA+AGG - chr1_4:14805239-14805258 Msa0152230:CDS 35.0%
ACTTGATAAGTACACTCAAG+TGG - chr1_4:14805397-14805416 Msa0152230:CDS 35.0%
! AACTGAAATCATGCACTGAT+GGG - chr1_4:14805459-14805478 Msa0152230:CDS 35.0%
ATATGGTACCTCTGCAATGT+CGG + chr1_4:14799460-14799479 None:intergenic 40.0%
!! CAGAGGTACCATATACAGAT+AGG - chr1_4:14799466-14799485 Msa0152230:three_prime_UTR 40.0%
AATCGTGCCCTATCTGTATA+TGG + chr1_4:14799477-14799496 None:intergenic 40.0%
TATACAGATAGGGCACGATT+TGG - chr1_4:14799477-14799496 Msa0152230:exon 40.0%
ATACAGATAGGGCACGATTT+GGG - chr1_4:14799478-14799497 Msa0152230:exon 40.0%
CCTATTGCTTCAACTAGTTG+CGG + chr1_4:14799652-14799671 None:intergenic 40.0%
CAACTAGTTGAAGCAATAGG+AGG - chr1_4:14799652-14799671 Msa0152230:CDS 40.0%
AACAAATCTCAAGCTTGAGG+TGG + chr1_4:14799696-14799715 None:intergenic 40.0%
TAAGATAGAGGTTAGAGGCA+TGG - chr1_4:14799786-14799805 Msa0152230:CDS 40.0%
TTACCAAAGAAGTCAGAAGG+AGG + chr1_4:14799841-14799860 None:intergenic 40.0%
CATGCAACTGGTGACATAAA+TGG + chr1_4:14799882-14799901 None:intergenic 40.0%
CATTTATGTCACCAGTTGCA+TGG - chr1_4:14799880-14799899 Msa0152230:CDS 40.0%
! GAAGCACCTTAATTCTACCA+AGG + chr1_4:14799930-14799949 None:intergenic 40.0%
TTATCTCTCTAACATGGCAC+AGG + chr1_4:14800257-14800276 None:intergenic 40.0%
TGTGCCATGTTAGAGAGATA+AGG - chr1_4:14800256-14800275 Msa0152230:intron 40.0%
! TGAGCCTTATCTCTCTAACA+TGG + chr1_4:14800263-14800282 None:intergenic 40.0%
CACTCAGGAATTTCAACCTT+GGG + chr1_4:14800537-14800556 None:intergenic 40.0%
ACACTCAGGAATTTCAACCT+TGG + chr1_4:14800538-14800557 None:intergenic 40.0%
TGCCACATATCCATCTTTGA+AGG - chr1_4:14800711-14800730 Msa0152230:CDS 40.0%
CTCCTTCAAAGATGGATATG+TGG + chr1_4:14800716-14800735 None:intergenic 40.0%
GAAGCTATGTGGAGTTTCAA+AGG + chr1_4:14801102-14801121 None:intergenic 40.0%
GTCCACACATCTCCTAAATT+TGG - chr1_4:14801135-14801154 Msa0152230:intron 40.0%
ACCCAAATTTAGGAGATGTG+TGG + chr1_4:14801140-14801159 None:intergenic 40.0%
!!! TGCATAGCTTTTCTAGAGTC+TGG + chr1_4:14801238-14801257 None:intergenic 40.0%
CTTGAAGCACATCCAATCAT+TGG - chr1_4:14801290-14801309 Msa0152230:intron 40.0%
CTAGAAATCAGCAACTGTGA+AGG - chr1_4:14801500-14801519 Msa0152230:intron 40.0%
ATGATAAGTGCAACGAGCTT+CGG + chr1_4:14801599-14801618 None:intergenic 40.0%
! CTTTGGAAACTCTTGGAATG+TGG + chr1_4:14801660-14801679 None:intergenic 40.0%
! GCTCTAACTTTGGAAACTCT+TGG + chr1_4:14801667-14801686 None:intergenic 40.0%
CATTCTGCAACTCCATATGT+TGG + chr1_4:14801829-14801848 None:intergenic 40.0%
GAATGTGACATACAGCATTG+TGG - chr1_4:14801844-14801863 Msa0152230:intron 40.0%
TCATCAATTACCGATGGTAC+AGG - chr1_4:14802206-14802225 Msa0152230:CDS 40.0%
TCTTGAACTTCCTGTACCAT+CGG + chr1_4:14802219-14802238 None:intergenic 40.0%
! GAACAAAGAAGCTCCTTTTG+AGG + chr1_4:14802261-14802280 None:intergenic 40.0%
AAAGGAGCTTCTTTGTTCAC+GGG - chr1_4:14802263-14802282 Msa0152230:intron 40.0%
TTACCATATAAGAACCCACC+TGG - chr1_4:14802356-14802375 Msa0152230:intron 40.0%
TACCATATAAGAACCCACCT+GGG - chr1_4:14802357-14802376 Msa0152230:intron 40.0%
!! ATTCTCCTTGGTGCCAATTT+CGG - chr1_4:14802440-14802459 Msa0152230:CDS 40.0%
ATATCTGAAGGAGTTGGACA+AGG + chr1_4:14802638-14802657 None:intergenic 40.0%
! TGATGGATATCTGAAGGAGT+TGG + chr1_4:14802644-14802663 None:intergenic 40.0%
TCATGAATTCACATAGGAGC+TGG - chr1_4:14802790-14802809 Msa0152230:CDS 40.0%
! CTTTTCTGAGCACTTCTTGT+TGG + chr1_4:14802853-14802872 None:intergenic 40.0%
GCCATTGCCTTATAATGTCT+TGG - chr1_4:14802898-14802917 Msa0152230:CDS 40.0%
AACAGTGGAACAAAGTCTTC+TGG - chr1_4:14803013-14803032 Msa0152230:intron 40.0%
!!! GTTATGGTTTTATCTGCCTC+AGG + chr1_4:14803044-14803063 None:intergenic 40.0%
GATCTTGGAGATTGTTTCCT+CGG + chr1_4:14803092-14803111 None:intergenic 40.0%
! GGTCTTATAATTAGGGACAG+AGG + chr1_4:14803155-14803174 None:intergenic 40.0%
AAACCAACCCTCTCTCTTAA+AGG - chr1_4:14803313-14803332 Msa0152230:CDS 40.0%
! TATCCTTTAAGAGAGAGGGT+TGG + chr1_4:14803319-14803338 None:intergenic 40.0%
AAGGGTCCTATAATTAGGGA+CGG - chr1_4:14803415-14803434 Msa0152230:CDS 40.0%
GAGGGACTAAAACGAAAAGT+TGG + chr1_4:14803489-14803508 None:intergenic 40.0%
ATAGGGACCAAAAGTGAAGT+TGG - chr1_4:14803837-14803856 Msa0152230:intron 40.0%
TTCGAGGGACTAAAAGTTGA+AGG - chr1_4:14803866-14803885 Msa0152230:intron 40.0%
CATATGAGTATGTGAGCAGT+AGG - chr1_4:14803983-14804002 Msa0152230:intron 40.0%
GGTACCATGCAGAATGTTAA+TGG - chr1_4:14804021-14804040 Msa0152230:intron 40.0%
AGTCCCATCATTTCAAGAGT+TGG - chr1_4:14804394-14804413 Msa0152230:CDS 40.0%
TCATTCAACAAAGCAACCAC+TGG + chr1_4:14804437-14804456 None:intergenic 40.0%
GTTGAATGAAACCTCTTCCA+AGG - chr1_4:14804448-14804467 Msa0152230:CDS 40.0%
TCCTCAAAGACTTCGCAAAA+CGG - chr1_4:14805123-14805142 Msa0152230:CDS 40.0%
ACTTGATTCCAATGTGCTCA+TGG + chr1_4:14805180-14805199 None:intergenic 40.0%
!! GACCAAACTTTCTGAGACAT+TGG - chr1_4:14805286-14805305 Msa0152230:CDS 40.0%
TGCCAATGTCTCAGAAAGTT+TGG + chr1_4:14805291-14805310 None:intergenic 40.0%
GTACACTCAAGTGGTATCTA+AGG - chr1_4:14805406-14805425 Msa0152230:CDS 40.0%
GAACTGAAATCATGCACTGA+TGG - chr1_4:14805458-14805477 Msa0152230:CDS 40.0%
! TGATGGGTGGTTAAAGTCTA+AGG - chr1_4:14805475-14805494 Msa0152230:CDS 40.0%
GAAGTCCGGACAGATTCAAA+TGG - chr1_4:14799383-14799402 Msa0152230:three_prime_UTR 45.0%
ACATTATCCCGACATTGCAG+AGG - chr1_4:14799449-14799468 Msa0152230:three_prime_UTR 45.0%
TATGGTACCTCTGCAATGTC+GGG + chr1_4:14799459-14799478 None:intergenic 45.0%
TGCAACAATTAAGGACCTGG+TGG - chr1_4:14799570-14799589 Msa0152230:CDS 45.0%
CCGCAACTAGTTGAAGCAAT+AGG - chr1_4:14799649-14799668 Msa0152230:CDS 45.0%
! GGCTTCAAGTCTTGTCCTAT+TGG - chr1_4:14799996-14800015 Msa0152230:CDS 45.0%
GGATCAGTGACTGTCTCAAA+AGG + chr1_4:14800236-14800255 None:intergenic 45.0%
GGTTGCTCGAACAATGTTGT+TGG - chr1_4:14800420-14800439 Msa0152230:intron 45.0%
GGCTACAATCTTGAACACTC+AGG + chr1_4:14800552-14800571 None:intergenic 45.0%
!!! GAGCAAGTACTGACGAGTTT+TGG + chr1_4:14800679-14800698 None:intergenic 45.0%
ATATGTGGCATTGTAGCGCA+TGG + chr1_4:14800701-14800720 None:intergenic 45.0%
TCATTTGGGTGCAAGACAAC+TGG - chr1_4:14800792-14800811 Msa0152230:CDS 45.0%
! CAAGGTGTCACAACTCATTG+TGG + chr1_4:14800958-14800977 None:intergenic 45.0%
CTAGATATGCAAGTTGTGGC+AGG + chr1_4:14801484-14801503 None:intergenic 45.0%
GGAAGCCGAAGTTTCTGATT+AGG + chr1_4:14801755-14801774 None:intergenic 45.0%
! TGCAACTCCATATGTTGGCT+CGG + chr1_4:14801824-14801843 None:intergenic 45.0%
ACATTGATCGCGATGTTCAC+TGG - chr1_4:14802115-14802134 Msa0152230:intron 45.0%
CATTGATCGCGATGTTCACT+GGG - chr1_4:14802116-14802135 Msa0152230:intron 45.0%
ACAGGAAGTTCAAGATGTGC+AGG - chr1_4:14802224-14802243 Msa0152230:CDS 45.0%
! AACCCAGGTGGGTTCTTATA+TGG + chr1_4:14802362-14802381 None:intergenic 45.0%
ATATAAGAACCCACCTGGGT+TGG - chr1_4:14802361-14802380 Msa0152230:intron 45.0%
CTTGAGAGGAGCAAACTCTA+AGG + chr1_4:14802409-14802428 None:intergenic 45.0%
! CTTAGAGTTTGCTCCTCTCA+AGG - chr1_4:14802407-14802426 Msa0152230:CDS 45.0%
CTAAACTAGCCCACCGAAAT+TGG + chr1_4:14802456-14802475 None:intergenic 45.0%
TGAATTCACATAGGAGCTGG+TGG - chr1_4:14802793-14802812 Msa0152230:CDS 45.0%
CTACCTCCGTCCCTAATTAT+AGG + chr1_4:14803424-14803443 None:intergenic 45.0%
GTCTGTGGTCCTAAATGACA+TGG + chr1_4:14804096-14804115 None:intergenic 45.0%
!! CCAATGGATTACCTTGGAAG+AGG + chr1_4:14804462-14804481 None:intergenic 45.0%
CCTCTTCCAAGGTAATCCAT+TGG - chr1_4:14804459-14804478 Msa0152230:CDS 45.0%
! ACCGTTTTGCGAAGTCTTTG+AGG + chr1_4:14805127-14805146 None:intergenic 45.0%
TCCTAAAGCCATGAGCACAT+TGG - chr1_4:14805169-14805188 Msa0152230:CDS 45.0%
TCCAATGTGCTCATGGCTTT+AGG + chr1_4:14805173-14805192 None:intergenic 45.0%
AAAACGGAAAGGTTTGGGAG+AGG - chr1_4:14805436-14805455 Msa0152230:CDS 45.0%
! TGAAATCATGCACTGATGGG+TGG - chr1_4:14805462-14805481 Msa0152230:CDS 45.0%
TAGCTCATGCAAATGCTAGC+TGG - chr1_4:14805504-14805523 Msa0152230:CDS 45.0%
TGCTAGCTGGAAGATCTTGA+AGG - chr1_4:14805517-14805536 Msa0152230:CDS 45.0%
!! AAAAATATGTATAATAAATA+GGG + chr1_4:14803259-14803278 None:intergenic 5.0%
!!! TAAAAAATTCTAATTTTTTT+TGG + chr1_4:14803643-14803662 None:intergenic 5.0%
!!! TAAAAAATTCTAAATTTTTT+TGG - chr1_4:14803734-14803753 Msa0152230:CDS 5.0%
!!! AAAAAATTCTAAATTTTTTT+GGG - chr1_4:14803735-14803754 Msa0152230:CDS 5.0%
GAATCTCTGCTCTTTCCACC+AGG + chr1_4:14799588-14799607 None:intergenic 50.0%
CCAAAGAAGTCAGAAGGAGG+TGG + chr1_4:14799838-14799857 None:intergenic 50.0%
CCACCTCCTTCTGACTTCTT+TGG - chr1_4:14799835-14799854 Msa0152230:CDS 50.0%
GTCTATGTTCACGCCTTCCA+CGG - chr1_4:14799975-14799994 Msa0152230:CDS 50.0%
ACAAGACTTGAAGCCGTGGA+AGG + chr1_4:14799991-14800010 None:intergenic 50.0%
TAGGACAAGACTTGAAGCCG+TGG + chr1_4:14799995-14800014 None:intergenic 50.0%
TGGTACCTCAGTGGATGTGT+TGG + chr1_4:14800818-14800837 None:intergenic 50.0%
!! TATGTTGGCTCGGATCAGTG+AGG + chr1_4:14801814-14801833 None:intergenic 50.0%
CACTGATCCGAGCCAACATA+TGG - chr1_4:14801814-14801833 Msa0152230:intron 50.0%
GGTTCAGTCAGCACCTCAAA+AGG - chr1_4:14802245-14802264 Msa0152230:intron 50.0%
AATCGAACCTGAGCCTTGAG+AGG + chr1_4:14802423-14802442 None:intergenic 50.0%
!! TCCTTGGTGCCAATTTCGGT+GGG - chr1_4:14802444-14802463 Msa0152230:CDS 50.0%
!! AAGTCTTCTGGAGTGTCCTG+AGG - chr1_4:14803025-14803044 Msa0152230:intron 50.0%
GGTCAACAAACTCAGAACCG+AGG - chr1_4:14803072-14803091 Msa0152230:intron 50.0%
GGTCCTATAATTAGGGACGG+AGG - chr1_4:14803418-14803437 Msa0152230:CDS 50.0%
TTGTTCATCCCTTGCTCCAG+TGG - chr1_4:14804418-14804437 Msa0152230:CDS 50.0%
CAAAGCAACCACTGGAGCAA+GGG + chr1_4:14804429-14804448 None:intergenic 50.0%
ACAAAGCAACCACTGGAGCA+AGG + chr1_4:14804430-14804449 None:intergenic 50.0%
AGTCAGAAGGAGGTGGACCA+TGG + chr1_4:14799831-14799850 None:intergenic 55.0%
ACTGGCCAACACATCCACTG+AGG - chr1_4:14800810-14800829 Msa0152230:CDS 55.0%
! TGGCTCGGATCAGTGAGGTT+CGG + chr1_4:14801809-14801828 None:intergenic 55.0%
GTTTGCTCCTCTCAAGGCTC+AGG - chr1_4:14802413-14802432 Msa0152230:CDS 55.0%
GGCTCAGGTTCGATTCTCCT+TGG - chr1_4:14802428-14802447 Msa0152230:CDS 55.0%
!! CTCCTTGGTGCCAATTTCGG+TGG - chr1_4:14802443-14802462 Msa0152230:CDS 55.0%
AGCCACGCGTCACGCTATTC+GGG + chr1_4:14800507-14800526 None:intergenic 60.0%
GAGCCACGCGTCACGCTATT+CGG + chr1_4:14800508-14800527 None:intergenic 60.0%
!! TGGCCTGGTGGTGTTGGCTT+TGG - chr1_4:14802381-14802400 Msa0152230:CDS 60.0%
!! GGCCTGGTGGTGTTGGCTTT+GGG - chr1_4:14802382-14802401 Msa0152230:CDS 60.0%
GTCCCAAAGCCAACACCACC+AGG + chr1_4:14802387-14802406 None:intergenic 60.0%
GCCCACCGAAATTGGCACCA+AGG + chr1_4:14802448-14802467 None:intergenic 60.0%
GACCCGAATAGCGTGACGCG+TGG - chr1_4:14800502-14800521 Msa0152230:intron 65.0%
CGCGTGGCTCAGTCTTCCCA+AGG - chr1_4:14800518-14800537 Msa0152230:intron 65.0%
!! AGAACCCACCTGGGTTGGCC+TGG - chr1_4:14802366-14802385 Msa0152230:intron 65.0%
ACCACCAGGCCAACCCAGGT+GGG + chr1_4:14802373-14802392 None:intergenic 65.0%
CAACACCACCAGGCCAACCC+AGG + chr1_4:14802377-14802396 None:intergenic 65.0%
!! CTGGGTTGGCCTGGTGGTGT+TGG - chr1_4:14802375-14802394 Msa0152230:CDS 65.0%
!! ACCCACCTGGGTTGGCCTGG+TGG - chr1_4:14802369-14802388 Msa0152230:intron 70.0%
CACCACCAGGCCAACCCAGG+TGG + chr1_4:14802374-14802393 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 14799379 14805671 14799379 ID=Msa0152230;Name=Msa0152230
chr1_4 mRNA 14799379 14805671 14799379 ID=Msa0152230-mRNA-1;Parent=Msa0152230;Name=Msa0152230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.77|0.7|1|1|1|10|115|1189
chr1_4 exon 14799379 14800213 14799379 ID=Msa0152230-mRNA-1:exon:5834;Parent=Msa0152230-mRNA-1
chr1_4 exon 14800581 14800835 14800581 ID=Msa0152230-mRNA-1:exon:5833;Parent=Msa0152230-mRNA-1
chr1_4 exon 14800967 14801074 14800967 ID=Msa0152230-mRNA-1:exon:5832;Parent=Msa0152230-mRNA-1
chr1_4 exon 14801905 14802048 14801905 ID=Msa0152230-mRNA-1:exon:5831;Parent=Msa0152230-mRNA-1
chr1_4 exon 14802131 14802244 14802131 ID=Msa0152230-mRNA-1:exon:5830;Parent=Msa0152230-mRNA-1
chr1_4 exon 14802371 14802508 14802371 ID=Msa0152230-mRNA-1:exon:5829;Parent=Msa0152230-mRNA-1
chr1_4 exon 14802766 14802941 14802766 ID=Msa0152230-mRNA-1:exon:5828;Parent=Msa0152230-mRNA-1
chr1_4 exon 14803118 14803841 14803118 ID=Msa0152230-mRNA-1:exon:5827;Parent=Msa0152230-mRNA-1
chr1_4 exon 14804219 14804636 14804219 ID=Msa0152230-mRNA-1:exon:5826;Parent=Msa0152230-mRNA-1
chr1_4 exon 14804899 14805671 14804899 ID=Msa0152230-mRNA-1:exon:5825;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14804899 14805671 14804899 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14804219 14804636 14804219 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14803118 14803841 14803118 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14802766 14802941 14802766 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14802371 14802508 14802371 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14802131 14802244 14802131 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14801905 14802048 14801905 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14800967 14801074 14800967 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14800581 14800835 14800581 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 CDS 14799494 14800213 14799494 ID=Msa0152230-mRNA-1:cds;Parent=Msa0152230-mRNA-1
chr1_4 three_prime_UTR 14799379 14799493 14799379 ID=Msa0152230-mRNA-1:three_prime_utr;Parent=Msa0152230-mRNA-1
Gene Sequence

>Msa0152230

ATGCGAAGTCCGGACAGATTCAAATGGAGATTTGACAAAGAAGTTGTTGCTACCATTTTTGACAAATACAACATTATCCCGACATTGCAGAGGTACCATATACAGATAGGGCACGATTTGGGATTATATCATTCAGTGGATGATTCCATATCAAGAGCTTTGTCTATTGAATATTTTGATCCCACTTCAAATGCAACAATTAAGGACCTGGTGGAAAGAGCAGAGATTCTTCATTTGAAGAGGATTCAAGGAGATTATACAACTGTAACACCGCAACTAGTTGAAGCAATAGGAGGAGAAATGAATGACATGATCCACCTCAAGCTTGAGATTTGTTCTAAGATAGAATGCCTCATTGATACTAATAACTTTTCATCTTCTGTTGGAAGCATATTCTCTAAGTTGGTTAAGATAGAGGTTAGAGGCATGGAAAATTTGAAAGAACTGTGCCATGGTCCACCTCCTTCTGACTTCTTTGGTAACATGCAAGAGATGAGTATCCATTTATGTCACCAGTTGCATGGAAGATTATTTGAAGGAAACTTGAACCTTGGTAGAATTAAGGTGCTTCAAGTTGAATATTGTCGCATGTTAACGTCTATGTTCACGCCTTCCACGGCTTCAAGTCTTGTCCTATTGGAAGAACTGATAATAGAAGGTTGCAAGGAACTGAGAAACATAATAGCATACGAGGAGGAAGAAGAAAACATACAAGAGCATATAGTACCACATGATGATAATGATAAAAAAGTTTATGGCTCAATTTTTCCAAATCTATCGGTTGCTCGAACAATGTTGTTGGAAGAATTGAGAATTAAGGAATGCCATTCATTGAAGAACATTATAACAGATGTTGGAGATGACCCGAATAGCGTGACGCGTGGCTCAGTCTTCCCAAGGTTGAAATTCCTGAGTGTTCAAGATTGTAGCCAAATGGAATATATGTTGGGACAAGAACATGAAGAACATAATAATAATGACACAGAGGTTCATATTGATCTCCCAGAATTGGAGCATTTAACTTTCTCTAGAGTACCAAAACTCGTCAGTACTTGCTCCATGCGCTACAATGCCACATATCCATCTTTGAAGGAGTTTTGTTTGGAAAGGTGTCCCGAGTTTACCATCAACTCTATTAGTGATTTCATGTTTCATTTGGGTGCAAGACAACTGGCCAACACATCCACTGAGGACATAGGAGAAATCATGAAGCATTTCCAGACTCTAGAAAAGCTATGCATAGAGAACTCAGACATTCAAGGGATATTTGGTCTTGAAGCACATCCAATCATTGGTCAACAAATGAGCTCAAGTTTGCAATCCTTGAAATTGAACAATCTACATGATCTAAGGTACACATTCATGGGTCCAAAAAATTTTATGAGCCTCCAAAATGTCAAAACTTTACAAATTGAGGGATGTAGTAAACTCAAAGTTGTCTTCTCAGCATCTGTCTTGAGAAGCCTGCCACAACTTGCATATCTAGAAATCAGCAACTGTGAAGGATTACATAAAATAATGGAAGACAATGAGGAAAATCAAAGGCAGACAATTCCTCAATCTCAACTGATATGCTTTCCGAAGCTCGTTGCACTTATCATCAAGAGTTGCCACAGTTTGAAAAGTCTCATCTCTGTCACCACATTCCAAGAGTTTCCAAAGTTAGAGCTCATGATCATAAAAGAAGCCTCTCAGTTAGAAGACATGTTTATAAGTGAACCACATGATGAGATTCCTAATCAGAAACTTCGGCTTCCTAAACTCAAATATCTAGTGCTTATGCAACTGCCGAACCTCACTGATCCGAGCCAACATATGGAGTTGCAGAATGTGACATACAGCATTGTGGATCATTGCCCTAACCTTTCATTTGATTCAACAACTACTCTTGAGGACTTAAAGAATATATTAGAAGATAGTAACATTGATCGCGATGTTCACTGGGAGCTATTTGAAATATTTGACACTATAGTGGAAGAGGCTGAAAATGAAAATCCAATATCAGAAACCATTCATCAATTACCGATGGTACAGGAAGTTCAAGATGTGCAGGTTCAGTCAGCACCTCAAAAGGAGCTTCTTTGTTCACGGATTATTGATGAAGCAGATAACAAAATTGTTGCTGTACATGATTCAAGAATGGAAACTTCATCAACAGATTTAGAAGTGATAACATTAACAAGGCCTTGTCCAACTCCTTCAGATATCCATCAATGTGAAATAACACAAGAGCTGGTGGATGAAAAAGTAGTTAGAGAAAGAAGTTTGCTTGACCAACAAGAAGTGCTCAGAAAAGAAAGTTTCAAACTGGAAATTGCTGTGCCATTGCCTTATAATGTCTTGTGTACTAAACAAACAGTGGAACAAAGTCTTCTGGAGTGTCCTGAGGCAGATAAAACCATAACAGAAATATGGTCAACAAACTCAGAACCGAGGAAACAATCTCCAAGATCGTTACTTATTCCATTACAAAAAGCATCTTCACAGAGAAGTACATATGAGTATGTGAGCAGTAGGAAAAATAATATAGTTGGTACCATGCAGAATGTTAATGGAAATGCTGAAGAAGTTTCAACTTCAGATGAAACTAATACATTGCCACAGTTGGTTGAAAAACAATCAATAGATGAACAAATTCCTATGGAACAAGGAACATTAAGAGAGAATAAGAGCTTCAATGGAACTCCTGATGAACATTCCAATCTTACACAAAATGTTAAAAGCTCTACAAATGGAAGTGTTTCTGAAGTAGCGTTAAGAAAAACTGCATCAGCAGTCCCATCATTTCAAGAGTTGGATTGTTCATCCCTTGCTCCAGTGGTTGCTTTGTTGAATGAAACCTCTTCCAAGATTTCTCCAATCACTGAAACCAATGAAACATGTTCCACTTCATCATCAATGCAAAGAATGTCAAGTAGCTTGTTGCAAGAGAAATTTAACAAAAATGCCAAAGTTGATTGCTTTTCACCTGATACTCAAAACTCAAGTTCTAGTCTGATTCTTGAGCTGAAAACTGAACTATCTGTGTATCTCAACATGTCACTTGAGACTATCATTGACAAAAATGTTTTCAACAATGTAGAGAGGATTGTAAATTCTTTAGCAAGGGAAATTACAGATGCTTTCAAACAGAACATCCTCAAAGACTTCGCAAAACGGTTGAAAATTTTCAAAGAAAGCGTTCCTAAAGCCATGAGCACATTGGAATCAAGTTCTGAGTTCATGTCTACTTATGAGAACCTTAACATGGAGCTTAATGTCAAGTTGAGTGAAGGACAAGAAAAAATTGAAAACTTGGAGACCAAACTTTCTGAGACATTGGCAAAAGAGTATACTATTGATATGGAGATTCAAAGATTGGTTAAAGAAAAAAGTGAGATTCTTGCTCAGAAGAACTTTCTTGAATCTCAACTTGATAAGTACACTCAAGTGGTATCTAAGGATTATGAAAAACGGAAAGGTTTGGGAGAGGAACTGAAATCATGCACTGATGGGTGGTTAAAGTCTAAGGAAGATTTAGCTCATGCAAATGCTAGCTGGAAGATCTTGAAGGAGATTTTACTTTTATGA
Protein sequence

>Msa0152230

MRSPDRFKWRFDKEVVATIFDKYNIIPTLQRYHIQIGHDLGLYHSVDDSISRALSIEYFDPTSNATIKDLVERAEILHLKRIQGDYTTVTPQLVEAIGGEMNDMIHLKLEICSKIECLIDTNNFSSSVGSIFSKLVKIEVRGMENLKELCHGPPPSDFFGNMQEMSIHLCHQLHGRLFEGNLNLGRIKVLQVEYCRMLTSMFTPSTASSLVLLEELIIEGCKELRNIIAYEEEEENIQEHIVPHDDNDKKVYGSIFPNLSVARTMLLEELRIKECHSLKNIITDVGDDPNSVTRGSVFPRLKFLSVQDCSQMEYMLGQEHEEHNNNDTEVHIDLPELEHLTFSRVPKLVSTCSMRYNATYPSLKEFCLERCPEFTINSISDFMFHLGARQLANTSTEDIGEIMKHFQTLEKLCIENSDIQGIFGLEAHPIIGQQMSSSLQSLKLNNLHDLRYTFMGPKNFMSLQNVKTLQIEGCSKLKVVFSASVLRSLPQLAYLEISNCEGLHKIMEDNEENQRQTIPQSQLICFPKLVALIIKSCHSLKSLISVTTFQEFPKLELMIIKEASQLEDMFISEPHDEIPNQKLRLPKLKYLVLMQLPNLTDPSQHMELQNVTYSIVDHCPNLSFDSTTTLEDLKNILEDSNIDRDVHWELFEIFDTIVEEAENENPISETIHQLPMVQEVQDVQVQSAPQKELLCSRIIDEADNKIVAVHDSRMETSSTDLEVITLTRPCPTPSDIHQCEITQELVDEKVVRERSLLDQQEVLRKESFKLEIAVPLPYNVLCTKQTVEQSLLECPEADKTITEIWSTNSEPRKQSPRSLLIPLQKASSQRSTYEYVSSRKNNIVGTMQNVNGNAEEVSTSDETNTLPQLVEKQSIDEQIPMEQGTLRENKSFNGTPDEHSNLTQNVKSSTNGSVSEVALRKTASAVPSFQELDCSSLAPVVALLNETSSKISPITETNETCSTSSSMQRMSSSLLQEKFNKNAKVDCFSPDTQNSSSSLILELKTELSVYLNMSLETIIDKNVFNNVERIVNSLAREITDAFKQNILKDFAKRLKIFKESVPKAMSTLESSSEFMSTYENLNMELNVKLSEGQEKIENLETKLSETLAKEYTIDMEIQRLVKEKSEILAQKNFLESQLDKYTQVVSKDYEKRKGLGEELKSCTDGWLKSKEDLAHANASWKILKEILLL*