Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105710 | XP_024632844.1 | 76.667 | 210 | 5 | 2 | 70 | 237 | 17 | 224 | 1.97e-104 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105710 | sp|Q9CAB7|PXG4_ARATH | 52.284 | 197 | 48 | 2 | 83 | 237 | 1 | 193 | 3.42e-62 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105710 | A0A072VEZ4 | 76.667 | 210 | 5 | 2 | 70 | 237 | 22 | 229 | 1.08e-104 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012060 | Msa0105710 | 0.822386 | 2.435204e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105710 | MtrunA17_Chr1g0161061 | 77.665 | 197 | 2 | 1 | 83 | 237 | 1 | 197 | 1.32e-104 | 300 |
| Msa0105710 | MtrunA17_Chr1g0161051 | 46.829 | 205 | 55 | 2 | 83 | 233 | 1 | 205 | 1.06e-60 | 189 |
| Msa0105710 | MtrunA17_Chr1g0186321 | 40.909 | 198 | 73 | 3 | 81 | 234 | 38 | 235 | 1.66e-42 | 144 |
| Msa0105710 | MtrunA17_Chr7g0274451 | 38.021 | 192 | 77 | 1 | 79 | 228 | 40 | 231 | 1.08e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105710 | AT1G70670.1 | 52.284 | 197 | 48 | 2 | 83 | 237 | 1 | 193 | 3.48e-63 | 196 |
| Msa0105710 | AT1G70680.1 | 49.741 | 193 | 52 | 2 | 83 | 233 | 1 | 190 | 2.25e-57 | 181 |
| Msa0105710 | AT2G33380.2 | 50.649 | 154 | 76 | 0 | 82 | 235 | 39 | 192 | 1.90e-50 | 163 |
| Msa0105710 | AT1G23240.1 | 41.451 | 193 | 70 | 2 | 77 | 227 | 3 | 194 | 1.17e-47 | 157 |
| Msa0105710 | AT1G23240.3 | 44.910 | 167 | 50 | 1 | 103 | 227 | 2 | 168 | 1.37e-46 | 153 |
| Msa0105710 | AT1G23240.4 | 43.750 | 176 | 57 | 1 | 94 | 227 | 28 | 203 | 6.22e-46 | 152 |
| Msa0105710 | AT2G33380.1 | 39.796 | 196 | 76 | 1 | 82 | 235 | 39 | 234 | 5.00e-42 | 143 |
| Msa0105710 | AT1G70680.2 | 46.053 | 152 | 40 | 1 | 124 | 233 | 5 | 156 | 2.93e-39 | 133 |
| Msa0105710 | AT5G55240.1 | 42.373 | 177 | 60 | 1 | 103 | 237 | 64 | 240 | 8.94e-38 | 132 |
| Msa0105710 | AT1G23240.2 | 56.701 | 97 | 42 | 0 | 94 | 190 | 28 | 124 | 6.14e-35 | 123 |
| Msa0105710 | AT4G26740.1 | 39.548 | 177 | 65 | 1 | 103 | 237 | 65 | 241 | 9.37e-35 | 124 |
| Msa0105710 | AT5G29560.1 | 47.748 | 111 | 56 | 2 | 79 | 188 | 39 | 148 | 4.64e-29 | 108 |
Find 51 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTCACATTGTGAAATT+AGG | 0.180625 | 1_3:-14305541 | Msa0105710:three_prime_UTR |
| GATACCTCCATTGTTGTTTG+TGG | 0.360918 | 1_3:+14309916 | None:intergenic |
| ATTGCAGGATTTCGAGCAAT+AGG | 0.392561 | 1_3:-14309485 | Msa0105710:intron |
| TGGAGAGGAAACAAAATAAG+AGG | 0.411929 | 1_3:+14310014 | None:intergenic |
| AAGAATGAAACGCAAGTATT+GGG | 0.419851 | 1_3:-14310166 | Msa0105710:CDS |
| TAGACACTGTGATATTCCTA+TGG | 0.427121 | 1_3:-14305438 | Msa0105710:three_prime_UTR |
| GGTGGTGTGAACCTGGGAAT+TGG | 0.427291 | 1_3:+14310120 | None:intergenic |
| TTTCTAATAAAGAAAGAATC+TGG | 0.433380 | 1_3:-14310193 | None:intergenic |
| GTATGTTCTTTGCAAAGATA+AGG | 0.436174 | 1_3:-14305668 | Msa0105710:CDS |
| AAAGAATGAAACGCAAGTAT+TGG | 0.443850 | 1_3:-14310167 | Msa0105710:CDS |
| TCTACTGGTAGAAATATAGA+AGG | 0.447256 | 1_3:+14306406 | None:intergenic |
| GGATTTCGAGCAATAGGTTG+TGG | 0.448792 | 1_3:-14309479 | Msa0105710:CDS |
| ACCATCCGTGCTGTTTATGA+TGG | 0.451685 | 1_3:-14305625 | Msa0105710:CDS |
| CTCTCTGCATCAAATACCTA+TGG | 0.466877 | 1_3:-14309960 | Msa0105710:CDS |
| TGGGAGTCTGTTTGAACGTA+TGG | 0.510529 | 1_3:-14305605 | Msa0105710:CDS |
| GCAAAACATGGAAGTGACTC+TGG | 0.513495 | 1_3:-14306364 | Msa0105710:CDS |
| GGCTTGCTAGCTACTCAGAA+TGG | 0.514733 | 1_3:-14305699 | Msa0105710:CDS |
| TTATGATGGTGGTGTGAACC+TGG | 0.515972 | 1_3:+14310113 | None:intergenic |
| TCTGTTTGAACGTATGGAAA+AGG | 0.526693 | 1_3:-14305599 | Msa0105710:CDS |
| TTACCTTGAAATGTTTCCCA+TGG | 0.539532 | 1_3:+14309693 | None:intergenic |
| GCATCAAATACCTATGGCTA+TGG | 0.548139 | 1_3:-14309954 | Msa0105710:CDS |
| TACCCATGGGAAACATTTCA+AGG | 0.559067 | 1_3:-14309696 | Msa0105710:intron |
| GTTCTTTGCAAAGATAAGGA+TGG | 0.560495 | 1_3:-14305664 | Msa0105710:CDS |
| GGAGAGGAAACAAAATAAGA+GGG | 0.564779 | 1_3:+14310015 | None:intergenic |
| TACCTTGAAATGTTTCCCAT+GGG | 0.569151 | 1_3:+14309694 | None:intergenic |
| TCTTAGCCAGAAAACTCGCC+CGG | 0.569182 | 1_3:-14309414 | Msa0105710:intron |
| ATGGGTAGACGATGCCATCA+TGG | 0.570109 | 1_3:+14309712 | None:intergenic |
| GTTGTTTGTGGTAGAAGATG+AGG | 0.581998 | 1_3:+14309928 | None:intergenic |
| AACATGTTGCATTCTTCGAT+AGG | 0.582799 | 1_3:-14309737 | Msa0105710:CDS |
| CCATCCGTGCTGTTTATGAT+GGG | 0.583814 | 1_3:-14305624 | Msa0105710:CDS |
| GATGAGGTTGCCATAGCCAT+AGG | 0.584139 | 1_3:+14309944 | None:intergenic |
| CCCATCATAAACAGCACGGA+TGG | 0.584800 | 1_3:+14305624 | None:intergenic |
| TATGATAATGATGATTATGA+TGG | 0.591307 | 1_3:+14310099 | None:intergenic |
| CTATGGGTATGTTGTGAGTG+TGG | 0.594869 | 1_3:-14305421 | Msa0105710:three_prime_UTR |
| TTGAATGCTGGGGAATGGAG+AGG | 0.595340 | 1_3:+14309999 | None:intergenic |
| CAGATATCAAACCAATTCCC+AGG | 0.598605 | 1_3:-14310131 | Msa0105710:CDS |
| AGACACTGTGATATTCCTAT+GGG | 0.599718 | 1_3:-14305437 | Msa0105710:three_prime_UTR |
| ATGATGGCATCGTCTACCCA+TGG | 0.600207 | 1_3:-14309710 | Msa0105710:CDS |
| GATAATGATGATTATGATGG+TGG | 0.600498 | 1_3:+14310102 | None:intergenic |
| TCTTCTACCACAAACAACAA+TGG | 0.603571 | 1_3:-14309923 | Msa0105710:CDS |
| CTAATAAAGAAAGAATCTGG+TGG | 0.605049 | 1_3:-14310190 | None:intergenic |
| TTCTTCGATAGGAACCATGA+TGG | 0.613602 | 1_3:-14309726 | Msa0105710:CDS |
| ATATTGATTATATATAGAGA+TGG | 0.621178 | 1_3:+14310066 | None:intergenic |
| TGATGGCATCGTCTACCCAT+GGG | 0.621283 | 1_3:-14309709 | Msa0105710:CDS |
| GTGTCTATGATAACGAAGGA+AGG | 0.635393 | 1_3:-14306342 | Msa0105710:intron |
| AACATAACGAAAGCAAAACA+TGG | 0.639860 | 1_3:-14306376 | Msa0105710:CDS |
| CACACTCACAACATACCCAT+AGG | 0.645185 | 1_3:+14305422 | None:intergenic |
| GACTCCCATCATAAACAGCA+CGG | 0.654325 | 1_3:+14305620 | None:intergenic |
| TCTACCACAAACAACAATGG+AGG | 0.671362 | 1_3:-14309920 | Msa0105710:intron |
| TATGATGGTGGTGTGAACCT+GGG | 0.675472 | 1_3:+14310114 | None:intergenic |
| TCTGGTGTCTATGATAACGA+AGG | 0.694666 | 1_3:-14306346 | Msa0105710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAATAAATAAAA+AGG | + | chr1_3:14305662-14305681 | None:intergenic | 0.0% |
| !! | AATAAAAAGGAAATATAAAA+AGG | + | chr1_3:14305649-14305668 | None:intergenic | 10.0% |
| !! | TCTTAATAATAATTATCTTA+AGG | + | chr1_3:14306314-14306333 | None:intergenic | 10.0% |
| !!! | AATGTTTAACTTTTTTTTTT+TGG | + | chr1_3:14306646-14306665 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAGTTAAACATT+AGG | - | chr1_3:14306646-14306665 | Msa0105710:intron | 10.0% |
| !!! | CTAATTTTTTTTTTTTTTTG+TGG | + | chr1_3:14307873-14307892 | None:intergenic | 10.0% |
| !! | TTAGTTAAAATATATATTGT+AGG | - | chr1_3:14307902-14307921 | Msa0105710:intron | 10.0% |
| !!! | AAAAAAAATGATATAAGTTT+TGG | + | chr1_3:14308016-14308035 | None:intergenic | 10.0% |
| !! | AAATCTACATAATTATATTA+AGG | + | chr1_3:14308794-14308813 | None:intergenic | 10.0% |
| !!! | ATTCTTATGATTTTTAAAAT+CGG | - | chr1_3:14309656-14309675 | Msa0105710:intron | 10.0% |
| !! | GATAAATATAGTATATATAT+GGG | + | chr1_3:14309738-14309757 | None:intergenic | 10.0% |
| !!! | ATATTGATTATATATAGAGA+TGG | + | chr1_3:14305464-14305483 | None:intergenic | 15.0% |
| !!! | GATGGAATTTTTTATTTTTA+TGG | + | chr1_3:14305910-14305929 | None:intergenic | 15.0% |
| !! | AAATTAATCACAAAAACATA+TGG | + | chr1_3:14306236-14306255 | None:intergenic | 15.0% |
| !!! | AAAAATATTTAATCCTTTTG+TGG | - | chr1_3:14306706-14306725 | Msa0105710:intron | 15.0% |
| !! | GATATATTAACAAACAAAAA+TGG | - | chr1_3:14306732-14306751 | Msa0105710:intron | 15.0% |
| !! | AATAAAAATGAATATGTATC+TGG | + | chr1_3:14306917-14306936 | None:intergenic | 15.0% |
| !!! | TTAAAATATCATGCTTTTAA+TGG | - | chr1_3:14306948-14306967 | Msa0105710:intron | 15.0% |
| !!! | TAAAATATCATGCTTTTAAT+GGG | - | chr1_3:14306949-14306968 | Msa0105710:intron | 15.0% |
| !! | TATAAATAACTCAGTTTATA+TGG | - | chr1_3:14308132-14308151 | Msa0105710:intron | 15.0% |
| !!! | AGAAAATTAATCATTTTACT+TGG | - | chr1_3:14308373-14308392 | Msa0105710:intron | 15.0% |
| !! | CTAGTTATTTAAAAATAAGA+TGG | - | chr1_3:14308989-14309008 | Msa0105710:intron | 15.0% |
| !!! | TTGTAACTTATATTTTATGA+TGG | - | chr1_3:14309084-14309103 | Msa0105710:intron | 15.0% |
| !! | AAAATTTCTTCAAATATTGA+AGG | + | chr1_3:14309307-14309326 | None:intergenic | 15.0% |
| !! | CGATAAATATAGTATATATA+TGG | + | chr1_3:14309739-14309758 | None:intergenic | 15.0% |
| !!! | TATGATAATGATGATTATGA+TGG | + | chr1_3:14305431-14305450 | None:intergenic | 20.0% |
| !! | TGTGTTGTATATTTGTAAAA+AGG | + | chr1_3:14306151-14306170 | None:intergenic | 20.0% |
| !!! | TTTTACAAATATACAACACA+TGG | - | chr1_3:14306151-14306170 | Msa0105710:intron | 20.0% |
| !!! | TTACTTTAAAGTTAACCATT+AGG | - | chr1_3:14306614-14306633 | Msa0105710:intron | 20.0% |
| !! | GTTTAATTCCTACTTAAATT+TGG | + | chr1_3:14306976-14306995 | None:intergenic | 20.0% |
| !!! | CTCAAAATTTATCAATTTTC+TGG | - | chr1_3:14306995-14307014 | Msa0105710:intron | 20.0% |
| !! | TAAAGATGTTCATAAGATAT+AGG | - | chr1_3:14307613-14307632 | Msa0105710:intron | 20.0% |
| !!! | TCTTAGGCTTTAAAAAAATA+TGG | - | chr1_3:14307723-14307742 | Msa0105710:intron | 20.0% |
| !!! | CTACGATTTTTTTTTTTTGA+AGG | + | chr1_3:14308226-14308245 | None:intergenic | 20.0% |
| !!! | GTAAAATGATTAATTTTCTC+TGG | + | chr1_3:14308372-14308391 | None:intergenic | 20.0% |
| !!! | ATTATATTAAGGCTTTGTTT+GGG | + | chr1_3:14308783-14308802 | None:intergenic | 20.0% |
| !!! | AATTATATTAAGGCTTTGTT+TGG | + | chr1_3:14308784-14308803 | None:intergenic | 20.0% |
| !!! | TTATATTTTATGATGGTGTA+GGG | - | chr1_3:14309091-14309110 | Msa0105710:intron | 20.0% |
| !!! | GTTATGTTTTTAATTTCTAC+TGG | + | chr1_3:14309139-14309158 | None:intergenic | 20.0% |
| !!! | TGTGTATTATAGTCATTTTA+AGG | - | chr1_3:14309225-14309244 | Msa0105710:intron | 20.0% |
| !!! | ATAGTTAGATTGTGAATTTT+AGG | - | chr1_3:14309275-14309294 | Msa0105710:intron | 20.0% |
| !! | CAATTTAAAAAGAGAAGATA+TGG | - | chr1_3:14309521-14309540 | Msa0105710:intron | 20.0% |
| !!! | TGCATCCTTTATTTTATTTT+TGG | - | chr1_3:14309574-14309593 | Msa0105710:intron | 20.0% |
| !! | TGCAACCAAAAATAAAATAA+AGG | + | chr1_3:14309582-14309601 | None:intergenic | 20.0% |
| !! | AAAAGAAATTTTGAATGCTG+GGG | + | chr1_3:14305541-14305560 | None:intergenic | 25.0% |
| !! | GAAAAGAAATTTTGAATGCT+GGG | + | chr1_3:14305542-14305561 | None:intergenic | 25.0% |
| !! | AGAAAAGAAATTTTGAATGC+TGG | + | chr1_3:14305543-14305562 | None:intergenic | 25.0% |
| !!! | TAGTTTTGTAGAGAGATATA+TGG | - | chr1_3:14305983-14306002 | Msa0105710:intron | 25.0% |
| !!! | GCAGCTATTTTCATAAATTT+TGG | - | chr1_3:14306090-14306109 | Msa0105710:intron | 25.0% |
| !!! | TAGTCGAACTTTTATTTTTG+AGG | - | chr1_3:14306186-14306205 | Msa0105710:intron | 25.0% |
| !!! | AGTCGAACTTTTATTTTTGA+GGG | - | chr1_3:14306187-14306206 | Msa0105710:intron | 25.0% |
| !! | TGCCAATGCATTTATATTTT+AGG | - | chr1_3:14306258-14306277 | Msa0105710:intron | 25.0% |
| ! | CTCCTAAAATATAAATGCAT+TGG | + | chr1_3:14306263-14306282 | None:intergenic | 25.0% |
| ! | TTTAGGAGAAATAAACTCTT+AGG | - | chr1_3:14306275-14306294 | Msa0105710:intron | 25.0% |
| ! | TATCTTAAGGACTAATCTTA+AGG | + | chr1_3:14306301-14306320 | None:intergenic | 25.0% |
| ! | TAAACAAAAGATTCATGTTG+AGG | - | chr1_3:14306340-14306359 | Msa0105710:intron | 25.0% |
| ! | AACGAATACGTATAAAAAAC+AGG | - | chr1_3:14306403-14306422 | Msa0105710:CDS | 25.0% |
| ! | GTGCAATAATAATTGGTATA+AGG | - | chr1_3:14306481-14306500 | Msa0105710:intron | 25.0% |
| ! | TTAATATATCGTTCCACAAA+AGG | + | chr1_3:14306722-14306741 | None:intergenic | 25.0% |
| !! | ATGGATTATATTAACACCAA+AGG | - | chr1_3:14306751-14306770 | Msa0105710:intron | 25.0% |
| ! | CTCTATTTAAGAAAAAAGTC+TGG | + | chr1_3:14307232-14307251 | None:intergenic | 25.0% |
| !!! | ATAGGCTTTAAAAAAAACCT+AGG | + | chr1_3:14307259-14307278 | None:intergenic | 25.0% |
| !! | TAAAGCCTATTTAGCTTAAA+AGG | - | chr1_3:14307269-14307288 | Msa0105710:intron | 25.0% |
| ! | TTCATCTTACTTAAATATGC+CGG | + | chr1_3:14307337-14307356 | None:intergenic | 25.0% |
| !! | ATAATCAACACGAAGTTTTA+GGG | + | chr1_3:14307523-14307542 | None:intergenic | 25.0% |
| ! | CAATGTGATCTAAGTTTAAA+TGG | + | chr1_3:14307587-14307606 | None:intergenic | 25.0% |
| !! | TAAGATATAGGCTTTTAAAC+AGG | - | chr1_3:14307625-14307644 | Msa0105710:intron | 25.0% |
| !!! | ATTTTTTTAAAGCCTAAGAC+TGG | + | chr1_3:14307722-14307741 | None:intergenic | 25.0% |
| !!! | ATACTTTGATGATTTTGACA+AGG | - | chr1_3:14308164-14308183 | Msa0105710:intron | 25.0% |
| ! | CAATCTCTTACAATCATAAT+AGG | - | chr1_3:14308263-14308282 | Msa0105710:intron | 25.0% |
| ! | GAGGAACTAAAAAATTGTAT+TGG | - | chr1_3:14308545-14308564 | Msa0105710:intron | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | - | chr1_3:14308548-14308567 | Msa0105710:intron | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+GGG | - | chr1_3:14308552-14308571 | Msa0105710:intron | 25.0% |
| ! | TTCAACAAAGATAGAAAACT+TGG | + | chr1_3:14308904-14308923 | None:intergenic | 25.0% |
| !!! | CTTATATTTTATGATGGTGT+AGG | - | chr1_3:14309090-14309109 | Msa0105710:intron | 25.0% |
| !! | TTTAACTTCTGATGAATTGA+TGG | - | chr1_3:14309357-14309376 | Msa0105710:intron | 25.0% |
| ! | TTAACTTCTGATGAATTGAT+GGG | - | chr1_3:14309358-14309377 | Msa0105710:intron | 25.0% |
| ! | AACTTCGTATCAATATATCA+TGG | + | chr1_3:14309476-14309495 | None:intergenic | 25.0% |
| ! | TGTGTATATACTAGAAAACA+TGG | + | chr1_3:14309609-14309628 | None:intergenic | 25.0% |
| ! | ATCATAAGAATGAAACTATG+TGG | + | chr1_3:14309647-14309666 | None:intergenic | 25.0% |
| ! | ACTATTCACATTGTGAAATT+AGG | - | chr1_3:14309986-14310005 | Msa0105710:CDS | 25.0% |
| AAAGAATGAAACGCAAGTAT+TGG | - | chr1_3:14305360-14305379 | Msa0105710:three_prime_UTR | 30.0% | |
| AAGAATGAAACGCAAGTATT+GGG | - | chr1_3:14305361-14305380 | Msa0105710:three_prime_UTR | 30.0% | |
| GATAATGATGATTATGATGG+TGG | + | chr1_3:14305428-14305447 | None:intergenic | 30.0% | |
| CGGTTTAAATGAGAAGAAAA+CGG | + | chr1_3:14305937-14305956 | None:intergenic | 30.0% | |
| TATCTCTCTACAAAACTACA+AGG | + | chr1_3:14305981-14306000 | None:intergenic | 30.0% | |
| ACCAAAATAAATCTCATGCA+TGG | - | chr1_3:14306010-14306029 | Msa0105710:intron | 30.0% | |
| ! | ACCATGCATGAGATTTATTT+TGG | + | chr1_3:14306014-14306033 | None:intergenic | 30.0% |
| AAAAAGGAAGAGAGAAATAC+CGG | + | chr1_3:14306135-14306154 | None:intergenic | 30.0% | |
| ATTCGTTTGTTCAATGGAAT+CGG | + | chr1_3:14306390-14306409 | None:intergenic | 30.0% | |
| ATACGTATTCGTTTGTTCAA+TGG | + | chr1_3:14306396-14306415 | None:intergenic | 30.0% | |
| AAAAAACAGGAAATGTGAAG+TGG | - | chr1_3:14306416-14306435 | Msa0105710:CDS | 30.0% | |
| ! | TGGGTTTATCTTTATGCTTT+TGG | - | chr1_3:14306459-14306478 | Msa0105710:intron | 30.0% |
| !! | GCTTTTGGTGCAATAATAAT+TGG | - | chr1_3:14306474-14306493 | Msa0105710:intron | 30.0% |
| AAAAAAGCCATGCCATTAAT+AGG | - | chr1_3:14306555-14306574 | Msa0105710:intron | 30.0% | |
| !!! | TTTTTTTGGTAGAGTCCTAA+TGG | + | chr1_3:14306632-14306651 | None:intergenic | 30.0% |
| !!! | TGCCTGCAATATTTTTTTGA+AGG | - | chr1_3:14306681-14306700 | Msa0105710:intron | 30.0% |
| !!! | GCCTGCAATATTTTTTTGAA+GGG | - | chr1_3:14306682-14306701 | Msa0105710:intron | 30.0% |
| TCCCTTCAAAAAAATATTGC+AGG | + | chr1_3:14306686-14306705 | None:intergenic | 30.0% | |
| GATTATATTAACACCAAAGG+AGG | - | chr1_3:14306754-14306773 | Msa0105710:intron | 30.0% | |
| !! | ACTTTGTTGTAAACTTTTGC+GGG | + | chr1_3:14306789-14306808 | None:intergenic | 30.0% |
| !! | GACTTTGTTGTAAACTTTTG+CGG | + | chr1_3:14306790-14306809 | None:intergenic | 30.0% |
| TAATGGGACCAAATTTAAGT+AGG | - | chr1_3:14306965-14306984 | Msa0105710:intron | 30.0% | |
| !! | TTGAAGTGTTGATAAGCAAT+AGG | - | chr1_3:14307067-14307086 | Msa0105710:intron | 30.0% |
| AAATGACCTCTTATCTCATA+TGG | + | chr1_3:14307119-14307138 | None:intergenic | 30.0% | |
| TTCTTAAATAGAGAAGACCT+AGG | - | chr1_3:14307239-14307258 | Msa0105710:intron | 30.0% | |
| ! | AAAAGCCTTTTAAGCCTATT+AGG | - | chr1_3:14307311-14307330 | Msa0105710:intron | 30.0% |
| ! | GATAATCAACACGAAGTTTT+AGG | + | chr1_3:14307524-14307543 | None:intergenic | 30.0% |
| !! | AGGCTTTAAAAAAATATGGC+AGG | - | chr1_3:14307727-14307746 | Msa0105710:intron | 30.0% |
| ATCATTGAGACAACAATTTG+CGG | - | chr1_3:14307825-14307844 | Msa0105710:intron | 30.0% | |
| !!! | ATAAGTTTTGGTTCCTTGAA+CGG | + | chr1_3:14308004-14308023 | None:intergenic | 30.0% |
| GTCATTCATTTGATTGATTG+TGG | + | chr1_3:14308100-14308119 | None:intergenic | 30.0% | |
| !! | TTTGATGATTTTGACAAGGA+AGG | - | chr1_3:14308168-14308187 | Msa0105710:intron | 30.0% |
| TTGAAGGTAAACTATATCTC+AGG | + | chr1_3:14308210-14308229 | None:intergenic | 30.0% | |
| ! | ATCATTTTACTTGGTCTCTT+AGG | - | chr1_3:14308382-14308401 | Msa0105710:intron | 30.0% |
| TGGAAGAAATAGAGGAAAAA+GGG | - | chr1_3:14308466-14308485 | Msa0105710:intron | 30.0% | |
| !!! | TTTTTTAGTTCCTCCAAATG+AGG | + | chr1_3:14308539-14308558 | None:intergenic | 30.0% |
| CTAAAAAATTGTATTGGAGG+AGG | - | chr1_3:14308551-14308570 | Msa0105710:intron | 30.0% | |
| TCTACTGGTAGAAATATAGA+AGG | + | chr1_3:14309124-14309143 | None:intergenic | 30.0% | |
| AACATAACGAAAGCAAAACA+TGG | - | chr1_3:14309151-14309170 | Msa0105710:intron | 30.0% | |
| ! | CATCAGAAGTTAAAGCATTT+GGG | + | chr1_3:14309351-14309370 | None:intergenic | 30.0% |
| ! | TCATCAGAAGTTAAAGCATT+TGG | + | chr1_3:14309352-14309371 | None:intergenic | 30.0% |
| TAACTTCTGATGAATTGATG+GGG | - | chr1_3:14309359-14309378 | Msa0105710:intron | 30.0% | |
| AATTGTCATTCATCGTTAAG+CGG | + | chr1_3:14309506-14309525 | None:intergenic | 30.0% | |
| !!! | TTTTAAAATCGGTTCTCGTT+CGG | - | chr1_3:14309667-14309686 | Msa0105710:intron | 30.0% |
| ATATATATGGGTGCTTCTAA+TGG | + | chr1_3:14309726-14309745 | None:intergenic | 30.0% | |
| !! | ATTGTTGCGATTTGATTTTC+AGG | - | chr1_3:14309807-14309826 | Msa0105710:intron | 30.0% |
| GTATGTTCTTTGCAAAGATA+AGG | - | chr1_3:14309859-14309878 | Msa0105710:intron | 30.0% | |
| GGAGAGGAAACAAAATAAGA+GGG | + | chr1_3:14305515-14305534 | None:intergenic | 35.0% | |
| TGGAGAGGAAACAAAATAAG+AGG | + | chr1_3:14305516-14305535 | None:intergenic | 35.0% | |
| ! | AAATTTTGAATGCTGGGGAA+TGG | + | chr1_3:14305536-14305555 | None:intergenic | 35.0% |
| TCTTCTACCACAAACAACAA+TGG | - | chr1_3:14305604-14305623 | Msa0105710:CDS | 35.0% | |
| AACATGTTGCATTCTTCGAT+AGG | - | chr1_3:14305790-14305809 | Msa0105710:intron | 35.0% | |
| TACCTTGAAATGTTTCCCAT+GGG | + | chr1_3:14305836-14305855 | None:intergenic | 35.0% | |
| TTACCTTGAAATGTTTCCCA+TGG | + | chr1_3:14305837-14305856 | None:intergenic | 35.0% | |
| AAAAGGAAGAGAGAAATACC+GGG | + | chr1_3:14306134-14306153 | None:intergenic | 35.0% | |
| ACAAAAGATTCATGTTGAGG+AGG | - | chr1_3:14306343-14306362 | Msa0105710:CDS | 35.0% | |
| AATAGGAATCAGATTCCTGA+TGG | - | chr1_3:14306439-14306458 | Msa0105710:intron | 35.0% | |
| ATAGGAATCAGATTCCTGAT+GGG | - | chr1_3:14306440-14306459 | Msa0105710:intron | 35.0% | |
| AGCATAAAGATAAACCCATC+AGG | + | chr1_3:14306457-14306476 | None:intergenic | 35.0% | |
| ! | GCCAAAAACAACACACATTT+TGG | - | chr1_3:14306812-14306831 | Msa0105710:intron | 35.0% |
| !!! | GCCAAAATGTGTGTTGTTTT+TGG | + | chr1_3:14306816-14306835 | None:intergenic | 35.0% |
| !! | TCGAGTTTGTTGGTTTGTTT+GGG | + | chr1_3:14306853-14306872 | None:intergenic | 35.0% |
| TTGGTCAAGGTTATCACATA+TGG | + | chr1_3:14306879-14306898 | None:intergenic | 35.0% | |
| !! | ACGCATATTCATTTTGGTCA+AGG | + | chr1_3:14306892-14306911 | None:intergenic | 35.0% |
| TCAATTATTGCTGTGGAAAG+AGG | + | chr1_3:14307051-14307070 | None:intergenic | 35.0% | |
| CAACACTTCAATTATTGCTG+TGG | + | chr1_3:14307058-14307077 | None:intergenic | 35.0% | |
| AACACACCATATGAGATAAG+AGG | - | chr1_3:14307110-14307129 | Msa0105710:intron | 35.0% | |
| ! | TACCTCTTTGTCTCCTTTTT+GGG | + | chr1_3:14307143-14307162 | None:intergenic | 35.0% |
| AAAAAGGAGACAAAGAGGTA+GGG | - | chr1_3:14307143-14307162 | Msa0105710:intron | 35.0% | |
| !! | TCTGGCCTTTTAAGCTAAAT+AGG | + | chr1_3:14307277-14307296 | None:intergenic | 35.0% |
| TTAAAAAAATATGGCAGGCC+AGG | - | chr1_3:14307732-14307751 | Msa0105710:intron | 35.0% | |
| CAAATCATGACCTCTTTGTA+GGG | + | chr1_3:14307800-14307819 | None:intergenic | 35.0% | |
| ! | AAAACTTTGTTTCCCGTTCA+AGG | - | chr1_3:14307988-14308007 | Msa0105710:intron | 35.0% |
| !!! | TAAGTTTTGGTTCCTTGAAC+GGG | + | chr1_3:14308003-14308022 | None:intergenic | 35.0% |
| GGAAAAAAGGAATGAGTAAG+TGG | - | chr1_3:14308446-14308465 | Msa0105710:intron | 35.0% | |
| TGAGTAAGTGGAAGAAATAG+AGG | - | chr1_3:14308458-14308477 | Msa0105710:intron | 35.0% | |
| GTGGAAGAAATAGAGGAAAA+AGG | - | chr1_3:14308465-14308484 | Msa0105710:intron | 35.0% | |
| ! | AGCAGAAGCAAATTTTGTCA+TGG | + | chr1_3:14309057-14309076 | None:intergenic | 35.0% |
| ! | ACAAAATTTGCTTCTGCTGT+TGG | - | chr1_3:14309059-14309078 | Msa0105710:intron | 35.0% |
| TACCATCCTTTGTAATCCTT+AGG | + | chr1_3:14309406-14309425 | None:intergenic | 35.0% | |
| GAAACTATGTGGTCTATCAT+TGG | + | chr1_3:14309636-14309655 | None:intergenic | 35.0% | |
| !!! | TAAAGTCTTTTTTCCTCGTC+TGG | + | chr1_3:14309703-14309722 | None:intergenic | 35.0% |
| GTTCTTTGCAAAGATAAGGA+TGG | - | chr1_3:14309863-14309882 | Msa0105710:intron | 35.0% | |
| TCTGTTTGAACGTATGGAAA+AGG | - | chr1_3:14309928-14309947 | Msa0105710:CDS | 35.0% | |
| TAGACACTGTGATATTCCTA+TGG | - | chr1_3:14310089-14310108 | Msa0105710:CDS | 35.0% | |
| AGACACTGTGATATTCCTAT+GGG | - | chr1_3:14310090-14310109 | Msa0105710:CDS | 35.0% | |
| CAGATATCAAACCAATTCCC+AGG | - | chr1_3:14305396-14305415 | Msa0105710:three_prime_UTR | 40.0% | |
| CTCTCTGCATCAAATACCTA+TGG | - | chr1_3:14305567-14305586 | Msa0105710:exon | 40.0% | |
| GCATCAAATACCTATGGCTA+TGG | - | chr1_3:14305573-14305592 | Msa0105710:CDS | 40.0% | |
| GTTGTTTGTGGTAGAAGATG+AGG | + | chr1_3:14305602-14305621 | None:intergenic | 40.0% | |
| TCTACCACAAACAACAATGG+AGG | - | chr1_3:14305607-14305626 | Msa0105710:CDS | 40.0% | |
| !! | GATACCTCCATTGTTGTTTG+TGG | + | chr1_3:14305614-14305633 | None:intergenic | 40.0% |
| TTCTTCGATAGGAACCATGA+TGG | - | chr1_3:14305801-14305820 | Msa0105710:intron | 40.0% | |
| TACCCATGGGAAACATTTCA+AGG | - | chr1_3:14305831-14305850 | Msa0105710:intron | 40.0% | |
| TGAGAAGAAAACGGTTCAGA+TGG | + | chr1_3:14305928-14305947 | None:intergenic | 40.0% | |
| ATTGCAGGATTTCGAGCAAT+AGG | - | chr1_3:14306042-14306061 | Msa0105710:intron | 40.0% | |
| CAGGAAATGTGAAGTGGAAT+AGG | - | chr1_3:14306422-14306441 | Msa0105710:intron | 40.0% | |
| CACATGCTTCAGCTTTACTT+TGG | + | chr1_3:14306525-14306544 | None:intergenic | 40.0% | |
| AAAGCCATGCCATTAATAGG+AGG | - | chr1_3:14306558-14306577 | Msa0105710:intron | 40.0% | |
| AGATCCTCCTATTAATGGCA+TGG | + | chr1_3:14306565-14306584 | None:intergenic | 40.0% | |
| !! | GTCGAGTTTGTTGGTTTGTT+TGG | + | chr1_3:14306854-14306873 | None:intergenic | 40.0% |
| GTCAAGGTTATCACATATGG+TGG | + | chr1_3:14306876-14306895 | None:intergenic | 40.0% | |
| ! | CTGGCAACGCATATTCATTT+TGG | + | chr1_3:14306898-14306917 | None:intergenic | 40.0% |
| TGTGGAAAGAGGATGACTAA+TGG | + | chr1_3:14307040-14307059 | None:intergenic | 40.0% | |
| ! | ATATGGTGTGTTGCACGTTT+TGG | + | chr1_3:14307102-14307121 | None:intergenic | 40.0% |
| AAGAGGTCATTTCCCCAAAA+AGG | - | chr1_3:14307127-14307146 | Msa0105710:intron | 40.0% | |
| ! | ACCTCTTTGTCTCCTTTTTG+GGG | + | chr1_3:14307142-14307161 | None:intergenic | 40.0% |
| ! | CTACCTCTTTGTCTCCTTTT+TGG | + | chr1_3:14307144-14307163 | None:intergenic | 40.0% |
| CAAAAAGGAGACAAAGAGGT+AGG | - | chr1_3:14307142-14307161 | Msa0105710:intron | 40.0% | |
| !! | GGCTTAAAAGGCTTTTTGAG+AGG | + | chr1_3:14307307-14307326 | None:intergenic | 40.0% |
| CTTAAATATGCCGGCCTAAT+AGG | + | chr1_3:14307328-14307347 | None:intergenic | 40.0% | |
| ! | AGGCTTTTAAACAGGCTAGT+AGG | - | chr1_3:14307633-14307652 | Msa0105710:intron | 40.0% |
| !!! | CTGTCATAGGCCTACTTTTT+AGG | + | chr1_3:14307691-14307710 | None:intergenic | 40.0% |
| CTAAAAAGTAGGCCTATGAC+AGG | - | chr1_3:14307689-14307708 | Msa0105710:intron | 40.0% | |
| CCAAATCATGACCTCTTTGT+AGG | + | chr1_3:14307801-14307820 | None:intergenic | 40.0% | |
| CCTACAAAGAGGTCATGATT+TGG | - | chr1_3:14307798-14307817 | Msa0105710:intron | 40.0% | |
| !! | TTAGGCTTTGTTTGCGAGTT+TGG | - | chr1_3:14308400-14308419 | Msa0105710:intron | 40.0% |
| GAAATAGAGGAAAAAGGGAG+AGG | - | chr1_3:14308471-14308490 | Msa0105710:intron | 40.0% | |
| GATACAAAACCCTCCTCATT+TGG | - | chr1_3:14308523-14308542 | Msa0105710:intron | 40.0% | |
| TTAGTTCCTCCAAATGAGGA+GGG | + | chr1_3:14308535-14308554 | None:intergenic | 40.0% | |
| ! | TTTAGTTCCTCCAAATGAGG+AGG | + | chr1_3:14308536-14308555 | None:intergenic | 40.0% |
| ! | ATTGTATTGGAGGAGGGTTT+TGG | - | chr1_3:14308558-14308577 | Msa0105710:intron | 40.0% |
| ! | TTTGAGGGGTGCAAAATATG+AGG | + | chr1_3:14308733-14308752 | None:intergenic | 40.0% |
| ! | AAGGAAAGGAAAGGCTTTGA+GGG | + | chr1_3:14308748-14308767 | None:intergenic | 40.0% |
| !! | TAAGGCTTTGTTTGGGAGTT+TGG | + | chr1_3:14308776-14308795 | None:intergenic | 40.0% |
| ! | TCTGGTGTCTATGATAACGA+AGG | - | chr1_3:14309181-14309200 | Msa0105710:intron | 40.0% |
| ! | GTGTCTATGATAACGAAGGA+AGG | - | chr1_3:14309185-14309204 | Msa0105710:intron | 40.0% |
| GTAATCCTTAGGCTCTCTAT+TGG | + | chr1_3:14309395-14309414 | None:intergenic | 40.0% | |
| AGAGAGCCTAAGGATTACAA+AGG | - | chr1_3:14309397-14309416 | Msa0105710:intron | 40.0% | |
| AGCCTAAGGATTACAAAGGA+TGG | - | chr1_3:14309401-14309420 | Msa0105710:intron | 40.0% | |
| !!! | TCTTTTTTCCTCGTCTGGAT+GGG | + | chr1_3:14309698-14309717 | None:intergenic | 40.0% |
| !! | TATGATGGTGGTGTGAACCT+GGG | + | chr1_3:14305416-14305435 | None:intergenic | 45.0% |
| !! | TTATGATGGTGGTGTGAACC+TGG | + | chr1_3:14305417-14305436 | None:intergenic | 45.0% |
| GCTCGAAATCCTGCAATCAA+GGG | + | chr1_3:14306039-14306058 | None:intergenic | 45.0% | |
| TGCTCGAAATCCTGCAATCA+AGG | + | chr1_3:14306040-14306059 | None:intergenic | 45.0% | |
| GGATTTCGAGCAATAGGTTG+TGG | - | chr1_3:14306048-14306067 | Msa0105710:intron | 45.0% | |
| GCTTCAGCTTTACTTTGGCA+TGG | + | chr1_3:14306520-14306539 | None:intergenic | 45.0% | |
| GCTGCAGATCCTCCTATTAA+TGG | + | chr1_3:14306570-14306589 | None:intergenic | 45.0% | |
| TTAATAGGAGGATCTGCAGC+AGG | - | chr1_3:14306570-14306589 | Msa0105710:intron | 45.0% | |
| CATATGGTGGTCGAGTTTGT+TGG | + | chr1_3:14306863-14306882 | None:intergenic | 45.0% | |
| TCCCCAAAAAGGAGACAAAG+AGG | - | chr1_3:14307138-14307157 | Msa0105710:intron | 45.0% | |
| AAAGAGGTAGGGATGGGAAT+AGG | - | chr1_3:14307154-14307173 | Msa0105710:intron | 45.0% | |
| ! | GCCTTTTAAGCCTATTAGGC+CGG | - | chr1_3:14307315-14307334 | Msa0105710:intron | 45.0% |
| TAAAGCCTAAGACTGGCATG+CGG | + | chr1_3:14307715-14307734 | None:intergenic | 45.0% | |
| CTCTTTGTAGGGATGGGAAT+AGG | + | chr1_3:14307789-14307808 | None:intergenic | 45.0% | |
| CTATTCCCATCCCTACAAAG+AGG | - | chr1_3:14307787-14307806 | Msa0105710:intron | 45.0% | |
| CATGACCTCTTTGTAGGGAT+GGG | + | chr1_3:14307795-14307814 | None:intergenic | 45.0% | |
| TCATGACCTCTTTGTAGGGA+TGG | + | chr1_3:14307796-14307815 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | chr1_3:14308404-14308423 | Msa0105710:intron | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | - | chr1_3:14308405-14308424 | Msa0105710:intron | 45.0% |
| ATAGAGGAAAAAGGGAGAGG+AGG | - | chr1_3:14308474-14308493 | Msa0105710:intron | 45.0% | |
| TAGAGGAAAAAGGGAGAGGA+GGG | - | chr1_3:14308475-14308494 | Msa0105710:intron | 45.0% | |
| ! | AAAAAGGGAGAGGAGGGTTT+TGG | - | chr1_3:14308481-14308500 | Msa0105710:intron | 45.0% |
| ! | AAAAGGGAGAGGAGGGTTTT+GGG | - | chr1_3:14308482-14308501 | Msa0105710:intron | 45.0% |
| ACAAAACCCTCCTCATTTGG+AGG | - | chr1_3:14308526-14308545 | Msa0105710:intron | 45.0% | |
| !!! | TATTGGAGGAGGGTTTTGGA+GGG | - | chr1_3:14308562-14308581 | Msa0105710:intron | 45.0% |
| !! | AGGAAAGGAAAGGCTTTGAG+GGG | + | chr1_3:14308747-14308766 | None:intergenic | 45.0% |
| GAAGGAAAGGAAAGGCTTTG+AGG | + | chr1_3:14308749-14308768 | None:intergenic | 45.0% | |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr1_3:14308771-14308790 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr1_3:14308772-14308791 | None:intergenic | 45.0% |
| GCAAAACATGGAAGTGACTC+TGG | - | chr1_3:14309163-14309182 | Msa0105710:intron | 45.0% | |
| TGTCATTCATCGTTAAGCGG+TGG | + | chr1_3:14309503-14309522 | None:intergenic | 45.0% | |
| !!! | GTCTTTTTTCCTCGTCTGGA+TGG | + | chr1_3:14309699-14309718 | None:intergenic | 45.0% |
| !! | ACCATCCGTGCTGTTTATGA+TGG | - | chr1_3:14309902-14309921 | Msa0105710:intron | 45.0% |
| !! | CCATCCGTGCTGTTTATGAT+GGG | - | chr1_3:14309903-14309922 | Msa0105710:intron | 45.0% |
| GACTCCCATCATAAACAGCA+CGG | + | chr1_3:14309910-14309929 | None:intergenic | 45.0% | |
| TGGGAGTCTGTTTGAACGTA+TGG | - | chr1_3:14309922-14309941 | Msa0105710:CDS | 45.0% | |
| CACACTCACAACATACCCAT+AGG | + | chr1_3:14310108-14310127 | None:intergenic | 45.0% | |
| CTATGGGTATGTTGTGAGTG+TGG | - | chr1_3:14310106-14310125 | Msa0105710:CDS | 45.0% | |
| !! | AATATAATTCTATTAAAAAA+CGG | + | chr1_3:14305957-14305976 | None:intergenic | 5.0% |
| TTGAATGCTGGGGAATGGAG+AGG | + | chr1_3:14305531-14305550 | None:intergenic | 50.0% | |
| GATGAGGTTGCCATAGCCAT+AGG | + | chr1_3:14305586-14305605 | None:intergenic | 50.0% | |
| ATGGGTAGACGATGCCATCA+TGG | + | chr1_3:14305818-14305837 | None:intergenic | 50.0% | |
| ATGATGGCATCGTCTACCCA+TGG | - | chr1_3:14305817-14305836 | Msa0105710:intron | 50.0% | |
| TGATGGCATCGTCTACCCAT+GGG | - | chr1_3:14305818-14305837 | Msa0105710:intron | 50.0% | |
| GCATGGTTACCCTTGATTGC+AGG | - | chr1_3:14306027-14306046 | Msa0105710:intron | 50.0% | |
| TCTTAGCCAGAAAACTCGCC+CGG | - | chr1_3:14306113-14306132 | Msa0105710:intron | 50.0% | |
| ! | GAAATACCGGGCGAGTTTTC+TGG | + | chr1_3:14306122-14306141 | None:intergenic | 50.0% |
| AGGAGACAAAGAGGTAGGGA+TGG | - | chr1_3:14307147-14307166 | Msa0105710:intron | 50.0% | |
| GGAGACAAAGAGGTAGGGAT+GGG | - | chr1_3:14307148-14307167 | Msa0105710:intron | 50.0% | |
| GAAAAAAGTCTGGCCTAGCC+TGG | + | chr1_3:14307222-14307241 | None:intergenic | 50.0% | |
| AGCTTAAAAGGCCAGACCAC+AGG | - | chr1_3:14307281-14307300 | Msa0105710:intron | 50.0% | |
| !! | TTTTTGAGAGGCCTGTGGTC+TGG | + | chr1_3:14307295-14307314 | None:intergenic | 50.0% |
| !! | AAGGCTTTTTGAGAGGCCTG+TGG | + | chr1_3:14307300-14307319 | None:intergenic | 50.0% |
| GCCGGCCTAATAGGCTTAAA+AGG | + | chr1_3:14307319-14307338 | None:intergenic | 50.0% | |
| ACAGGCTAGTAGGCTGTATC+AGG | - | chr1_3:14307643-14307662 | Msa0105710:intron | 50.0% | |
| !! | GGCTGTATCAGGCTTTGAGA+AGG | - | chr1_3:14307654-14307673 | Msa0105710:intron | 50.0% |
| !! | TATCAGGCTTTGAGAAGGCC+AGG | - | chr1_3:14307659-14307678 | Msa0105710:intron | 50.0% |
| !!! | CTACTTTTTAGGCCTGAGCC+TGG | + | chr1_3:14307680-14307699 | None:intergenic | 50.0% |
| CAGGCTCAGGCCTAAAAAGT+AGG | - | chr1_3:14307678-14307697 | Msa0105710:intron | 50.0% | |
| AAATATGGCAGGCCAGGCTT+AGG | - | chr1_3:14307738-14307757 | Msa0105710:intron | 50.0% | |
| TGTAGGGATGGGAATAGGCT+AGG | + | chr1_3:14307784-14307803 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | chr1_3:14308403-14308422 | Msa0105710:intron | 50.0% |
| TTTGCGAGTTTGGAGGGGAA+GGG | - | chr1_3:14308410-14308429 | Msa0105710:intron | 50.0% | |
| AGGGGAAGGCTTGGGAAAAA+AGG | - | chr1_3:14308433-14308452 | Msa0105710:intron | 50.0% | |
| ! | AAAGGGAGAGGAGGGTTTTG+GGG | - | chr1_3:14308483-14308502 | Msa0105710:intron | 50.0% |
| !! | GTATTGGAGGAGGGTTTTGG+AGG | - | chr1_3:14308561-14308580 | Msa0105710:intron | 50.0% |
| !!! | AGGAGGGTTTTGGAGGGTTT+TGG | - | chr1_3:14308568-14308587 | Msa0105710:intron | 50.0% |
| !!! | AGGGTTTTGGAGGGTTTTGG+AGG | - | chr1_3:14308571-14308590 | Msa0105710:intron | 50.0% |
| !!! | GGGTTTTGGAGGGTTTTGGA+GGG | - | chr1_3:14308572-14308591 | Msa0105710:intron | 50.0% |
| TTGGAGGGGAAGGAAAGGAA+AGG | + | chr1_3:14308757-14308776 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr1_3:14308773-14308792 | None:intergenic | 50.0% |
| TGAATTGATGGGGCTGCTCA+AGG | - | chr1_3:14309369-14309388 | Msa0105710:intron | 50.0% | |
| CAAGGCCAATAGAGAGCCTA+AGG | - | chr1_3:14309387-14309406 | Msa0105710:intron | 50.0% | |
| !! | GGCTTGCTAGCTACTCAGAA+TGG | - | chr1_3:14309828-14309847 | Msa0105710:intron | 50.0% |
| CCCATCATAAACAGCACGGA+TGG | + | chr1_3:14309906-14309925 | None:intergenic | 50.0% | |
| GGTGGTGTGAACCTGGGAAT+TGG | + | chr1_3:14305410-14305429 | None:intergenic | 55.0% | |
| CGGGCTTCTATGTCCTCCTT+TGG | + | chr1_3:14306770-14306789 | None:intergenic | 55.0% | |
| AGGCCTTGCAAAGCCTAGCT+CGG | - | chr1_3:14307758-14307777 | Msa0105710:intron | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | - | chr1_3:14308409-14308428 | Msa0105710:intron | 55.0% | |
| !! | AAGGGAGAGGAGGGTTTTGG+GGG | - | chr1_3:14308484-14308503 | Msa0105710:intron | 55.0% |
| GGAGTTTGGAGGGGAAGGAA+AGG | + | chr1_3:14308762-14308781 | None:intergenic | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+AGG | + | chr1_3:14308767-14308786 | None:intergenic | 55.0% | |
| CGGATTTACCCATCCAGACG+AGG | - | chr1_3:14309687-14309706 | Msa0105710:intron | 55.0% | |
| GGTAGGGATGGGAATAGGCC+AGG | - | chr1_3:14307159-14307178 | Msa0105710:intron | 60.0% | |
| CATACGGCCTAGCCTACGAC+AGG | - | chr1_3:14307196-14307215 | Msa0105710:intron | 60.0% | |
| !! | GCTTTGAGAAGGCCAGGCTC+AGG | - | chr1_3:14307665-14307684 | Msa0105710:intron | 60.0% |
| ACTGGCATGCGGCCTGTCAT+AGG | + | chr1_3:14307704-14307723 | None:intergenic | 60.0% | |
| ACAGGCCGCATGCCAGTCTT+AGG | - | chr1_3:14307707-14307726 | Msa0105710:intron | 60.0% | |
| GGCTTTGCAAGGCCTAAGCC+TGG | + | chr1_3:14307753-14307772 | None:intergenic | 60.0% | |
| AGGCCGAGCTAGGCTTTGCA+AGG | + | chr1_3:14307764-14307783 | None:intergenic | 60.0% | |
| GGAATAGGCTAGGCCGAGCT+AGG | + | chr1_3:14307774-14307793 | None:intergenic | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | - | chr1_3:14308414-14308433 | Msa0105710:intron | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | - | chr1_3:14308415-14308434 | Msa0105710:intron | 60.0% | |
| !!! | AGGGAGAGGAGGGTTTTGGG+GGG | - | chr1_3:14308485-14308504 | Msa0105710:intron | 60.0% |
| GGGATGGGAATAGGCCAGGC+CGG | - | chr1_3:14307163-14307182 | Msa0105710:intron | 65.0% | |
| AATAGGCCAGGCCGGCCTAC+AGG | - | chr1_3:14307171-14307190 | Msa0105710:intron | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | - | chr1_3:14307172-14307191 | Msa0105710:intron | 65.0% | |
| GCTAGGCCGTATGCCCCTGT+AGG | + | chr1_3:14307189-14307208 | None:intergenic | 65.0% | |
| AGCCTGGCCTGTCGTAGGCT+AGG | + | chr1_3:14307206-14307225 | None:intergenic | 65.0% | |
| AGCCTACGACAGGCCAGGCT+AGG | - | chr1_3:14307206-14307225 | Msa0105710:intron | 65.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | - | chr1_3:14308413-14308432 | Msa0105710:intron | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | - | chr1_3:14308419-14308438 | Msa0105710:intron | 65.0% | |
| GGGAAGGGAGGGGAAGGCTT+GGG | - | chr1_3:14308425-14308444 | Msa0105710:intron | 65.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | - | chr1_3:14307173-14307192 | Msa0105710:intron | 70.0% | |
| TATGCCCCTGTAGGCCGGCC+TGG | + | chr1_3:14307180-14307199 | None:intergenic | 70.0% | |
| ! | GGCCGGCCTACAGGGGCATA+CGG | - | chr1_3:14307180-14307199 | Msa0105710:intron | 70.0% |
| GGCCGTATGCCCCTGTAGGC+CGG | + | chr1_3:14307185-14307204 | None:intergenic | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | - | chr1_3:14307201-14307220 | Msa0105710:intron | 70.0% | |
| GGCCTAGCCTGGCCTGTCGT+AGG | + | chr1_3:14307211-14307230 | None:intergenic | 70.0% | |
| GGGGAAGGGAGGGGAAGGCT+TGG | - | chr1_3:14308424-14308443 | Msa0105710:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 14305346 | 14310203 | 14305346 | ID=Msa0105710;Name=Msa0105710 |
| chr1_3 | mRNA | 14305346 | 14310203 | 14305346 | ID=Msa0105710-mRNA-1;Parent=Msa0105710;Name=Msa0105710-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.75|1|1|1|1|5|224|237 |
| chr1_3 | exon | 14305346 | 14305720 | 14305346 | ID=Msa0105710-mRNA-1:exon:5659;Parent=Msa0105710-mRNA-1 |
| chr1_3 | exon | 14306343 | 14306437 | 14306343 | ID=Msa0105710-mRNA-1:exon:5658;Parent=Msa0105710-mRNA-1 |
| chr1_3 | exon | 14309415 | 14309500 | 14309415 | ID=Msa0105710-mRNA-1:exon:5657;Parent=Msa0105710-mRNA-1 |
| chr1_3 | exon | 14309697 | 14309795 | 14309697 | ID=Msa0105710-mRNA-1:exon:5656;Parent=Msa0105710-mRNA-1 |
| chr1_3 | exon | 14309921 | 14310203 | 14309921 | ID=Msa0105710-mRNA-1:exon:5655;Parent=Msa0105710-mRNA-1 |
| chr1_3 | CDS | 14309921 | 14310203 | 14309921 | ID=Msa0105710-mRNA-1:cds;Parent=Msa0105710-mRNA-1 |
| chr1_3 | CDS | 14309697 | 14309795 | 14309697 | ID=Msa0105710-mRNA-1:cds;Parent=Msa0105710-mRNA-1 |
| chr1_3 | CDS | 14309415 | 14309500 | 14309415 | ID=Msa0105710-mRNA-1:cds;Parent=Msa0105710-mRNA-1 |
| chr1_3 | CDS | 14306343 | 14306437 | 14306343 | ID=Msa0105710-mRNA-1:cds;Parent=Msa0105710-mRNA-1 |
| chr1_3 | CDS | 14305570 | 14305720 | 14305570 | ID=Msa0105710-mRNA-1:cds;Parent=Msa0105710-mRNA-1 |
| chr1_3 | three_prime_UTR | 14305346 | 14305569 | 14305346 | ID=Msa0105710-mRNA-1:three_prime_utr;Parent=Msa0105710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
