AlfalfaGEDB | Msa0105760

M. sativa cultivar zhongmu-4 / Msa0105760

KEGG: K02180
GO: GO:0000070 GO:0000075 GO:0000151 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000779 GO:0000793 GO:0000819 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0006996 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0008608 GO:0009524 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0015630 GO:0016043 GO:0022402 GO:0030071 GO:0031461 GO:0031577 GO:0031974 GO:0031981 GO:0032182 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033597 GO:0043130 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051276 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0070013 GO:0071173 GO:0071174 GO:0071840 GO:0080008 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902494 GO:1903047 GO:1905818 GO:1905819 GO:1990234 GO:1990298 GO:2000816 GO:2001251
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105760	MCI00482.1	87.500	40	5	0	11	50	51	90	7.03e-17	80.5

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105760	sp\|Q9LJN8\|BUB31_ARATH	77.778	45	10	0	11	55	162	206	9.88e-17	77.8

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105760	A0A392NM29	87.500	40	5	0	11	50	51	90	3.36e-17	80.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0105760	Msa0399250	0.854829	9.482062e-62	-8.615850e-47
Msa0105760	Msa0976670	0.810186	1.306553e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105760	MtrunA17_Chr5g0393711	80.000	45	9	0	11	55	166	210	2.71e-19	81.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105760	AT3G19590.1	77.778	45	10	0	11	55	162	206	1.00e-17	77.8
Msa0105760	AT1G49910.1	77.778	45	10	0	11	55	161	205	1.43e-17	77.0

Find 38 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAGAGAGACTCACGAAATT+TGG	0.153316	1_3:+14386812	None:intergenic
AGCATCTCCTCTTGAGGAAT+TGG	0.279884	1_3:+14383187	None:intergenic
TTGTGTTGTGTGTTTCCTAT+TGG	0.288173	1_3:-14383365	Msa0105760:CDS
TACAGTTTACCTGTTCCATT+TGG	0.330327	1_3:+14385754	None:intergenic
GAAGATTCCCTTCGTTGTTC+AGG	0.332221	1_3:+14385811	None:intergenic
CAGTGACAAGCAATTGTATC+TGG	0.342278	1_3:-14386622	Msa0105760:five_prime_UTR
AAGAGAGACTCACGAAATTT+GGG	0.359807	1_3:+14386813	None:intergenic
AAGAGCAGTGATGTAATATA+TGG	0.378578	1_3:-14385905	Msa0105760:exon
GAGAATTATTAGAATCCAAT+AGG	0.396514	1_3:+14383350	None:intergenic
TTCCCTTCGTTGTTCAGGAC+AGG	0.425057	1_3:+14385816	None:intergenic
TGGGTAGCAGCGTACACATC+TGG	0.426524	1_3:+14385774	None:intergenic
CGCTGCTACCCAAATGGAAC+AGG	0.433713	1_3:-14385763	Msa0105760:intron
CATTTGAATACTCTAGCATC+AGG	0.442639	1_3:-14385871	Msa0105760:CDS
TTTGTTAAGGTGAGAGGCAG+TGG	0.468720	1_3:-14383301	Msa0105760:CDS
ATCTTAATGTTTATGACTTG+AGG	0.469466	1_3:-14385846	Msa0105760:CDS
ACAGTTTACCTGTTCCATTT+GGG	0.482139	1_3:+14385755	None:intergenic
TGTGTACGCTGCTACCCAAA+TGG	0.483373	1_3:-14385769	Msa0105760:CDS
TGAGGATCGAATGAAGGAAC+TGG	0.490516	1_3:+14386837	None:intergenic
GACTCACGAAATTTGGGTTG+AGG	0.492236	1_3:+14386819	None:intergenic
AAGTCACTCGTCTGCAACAT+GGG	0.499491	1_3:+14383322	None:intergenic
TTGGGTTGAGGATCGAATGA+AGG	0.500303	1_3:+14386831	None:intergenic
CTCCGTTCCAATTCCTCAAG+AGG	0.502966	1_3:-14383194	Msa0105760:CDS
GCAGACGAGTGACTTTGTTA+AGG	0.530326	1_3:-14383314	Msa0105760:CDS
TTGAGGAATTGGAACGGAGA+AGG	0.540642	1_3:+14383198	None:intergenic
CTTAGATCTGAAGAAGCGTA+TGG	0.560039	1_3:-14386583	Msa0105760:five_prime_UTR
AGTGATGTAATATATGGAGA+AGG	0.569575	1_3:-14385899	Msa0105760:exon
ACATATTTATGACTTAAGCT+CGG	0.572739	1_3:+14383146	None:intergenic
TGTCACTGTGCACTGCATCA+TGG	0.574013	1_3:+14386637	None:intergenic
GATTTAAGCATCTCCTCTTG+AGG	0.577590	1_3:+14383181	None:intergenic
AGTGACTTTGTTAAGGTGAG+AGG	0.587631	1_3:-14383307	Msa0105760:CDS
AAAGTCACTCGTCTGCAACA+TGG	0.592825	1_3:+14383321	None:intergenic
GAAGCCGACACACACTTCAA+CGG	0.608051	1_3:+14383249	None:intergenic
CTCCTCTTGAGGAATTGGAA+CGG	0.612582	1_3:+14383192	None:intergenic
GTCCTGTCCTGAACAACGAA+GGG	0.615568	1_3:-14385818	Msa0105760:CDS
TGTCCTGTCCTGAACAACGA+AGG	0.632022	1_3:-14385819	Msa0105760:CDS
ACACTTCAACGGATGCTGCA+AGG	0.640929	1_3:+14383260	None:intergenic
GCATCCGTTGAAGTGTGTGT+CGG	0.659934	1_3:-14383253	Msa0105760:CDS
ATTTGAATACTCTAGCATCA+GGG	0.682033	1_3:-14385870	Msa0105760:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTAGTTTTCATTTTTT+GGG	+	chr1_3:14385501-14385520	None:intergenic	10.0%
!!!	TTTTTTTAGTTTTCATTTTT+TGG	+	chr1_3:14385502-14385521	None:intergenic	10.0%
!!	ATGAAAACTAAAAAAAAAAA+AGG	-	chr1_3:14385506-14385525	Msa0105760:intron	10.0%
!!	ATATATAAAGAATAAAGTTC+AGG	+	chr1_3:14385388-14385407	None:intergenic	15.0%
!!!	TTTTTAGTTTTCATTTTTTG+GGG	+	chr1_3:14385500-14385519	None:intergenic	15.0%
!!	TTTCAATAAAAAAAAAGAGT+TGG	+	chr1_3:14385817-14385836	None:intergenic	15.0%
!!!	TAATTAGCATTATTTTTTGT+GGG	-	chr1_3:14386394-14386413	Msa0105760:intron	15.0%
!!!	TGTTAAGTTTCAATTTTCTA+TGG	-	chr1_3:14383965-14383984	Msa0105760:intron	20.0%
!!!	AAATAACAACAATTTTGAAG+TGG	+	chr1_3:14384624-14384643	None:intergenic	20.0%
!!	TTAAAACCTAAAACAAATTG+TGG	-	chr1_3:14384849-14384868	Msa0105760:intron	20.0%
!!!	TTAAAACCACAATTTGTTTT+AGG	+	chr1_3:14384858-14384877	None:intergenic	20.0%
!!!	ATTGTGGTTTTAACTTTTAA+TGG	-	chr1_3:14384865-14384884	Msa0105760:intron	20.0%
!!!	TTTTTAGCCTAATATTACTT+TGG	-	chr1_3:14385071-14385090	Msa0105760:intron	20.0%
!!	TAAGTTTCCAAAGTAATATT+AGG	+	chr1_3:14385081-14385100	None:intergenic	20.0%
!!	AATTTACACCAAAAAAATCA+GGG	+	chr1_3:14385137-14385156	None:intergenic	20.0%
!!	TAATTTACACCAAAAAAATC+AGG	+	chr1_3:14385138-14385157	None:intergenic	20.0%
!!!	TATAAAATATCGATTATGCA+AGG	+	chr1_3:14385215-14385234	None:intergenic	20.0%
!!!	TTTTAGTTTTCATTTTTTGG+GGG	+	chr1_3:14385499-14385518	None:intergenic	20.0%
!!!	ACATATTACACTTTTTAACT+GGG	+	chr1_3:14385603-14385622	None:intergenic	20.0%
!!!	TTTTTTCATCTTAAATGAAG+TGG	+	chr1_3:14385783-14385802	None:intergenic	20.0%
!!!	CTAATTAGCATTATTTTTTG+TGG	-	chr1_3:14386393-14386412	Msa0105760:intron	20.0%
!!	TTTGTAACTACTATGAAATT+AGG	-	chr1_3:14386482-14386501	Msa0105760:intron	20.0%
!!!	ATGTTAAACTTACTTTTACA+TGG	-	chr1_3:14386539-14386558	Msa0105760:intron	20.0%
!!!	TTTTATCTCACAAGGTATTA+TGG	-	chr1_3:14383236-14383255	Msa0105760:CDS	25.0%
!	AGTATATCTTGATAAGGAAA+TGG	+	chr1_3:14383331-14383350	None:intergenic	25.0%
!	TTTCCTTATCAAGATATACT+TGG	-	chr1_3:14383331-14383350	Msa0105760:CDS	25.0%
!	GAATTACAAAAACATATGTG+CGG	+	chr1_3:14383550-14383569	None:intergenic	25.0%
!	CATTGTCTAAATTAGATTTG+TGG	+	chr1_3:14383652-14383671	None:intergenic	25.0%
!!	ACTTCAAAGATTAGTTATTC+TGG	+	chr1_3:14383766-14383785	None:intergenic	25.0%
!!	TTTTCTATGGTTACATTACA+TGG	-	chr1_3:14383978-14383997	Msa0105760:intron	25.0%
!	ATCTTAATGTTTATGACTTG+AGG	-	chr1_3:14384167-14384186	Msa0105760:intron	25.0%
!!!	GAATTTTTTTGACCTATCTA+AGG	-	chr1_3:14384548-14384567	Msa0105760:intron	25.0%
!	AAAATCAATACTTCTTTGTC+TGG	+	chr1_3:14384578-14384597	None:intergenic	25.0%
!	TTTAGCATGCTAGTTAATTA+AGG	+	chr1_3:14384824-14384843	None:intergenic	25.0%
!!	AGTTGAGTTTTCTTGAATTA+TGG	-	chr1_3:14385164-14385183	Msa0105760:intron	25.0%
!!	TTTTATGACCCAAAAGAAAA+GGG	-	chr1_3:14385333-14385352	Msa0105760:intron	25.0%
!	TGTTGATATGTAGAGAAATT+AGG	+	chr1_3:14385577-14385596	None:intergenic	25.0%
!!!	CACATATTACACTTTTTAAC+TGG	+	chr1_3:14385604-14385623	None:intergenic	25.0%
!	GAGAACGAAAATAAAAAACT+TGG	+	chr1_3:14385638-14385657	None:intergenic	25.0%
!	AGTGAAAAATTAAGTGATGA+GGG	+	chr1_3:14385939-14385958	None:intergenic	25.0%
!!!	TTTTATCTCACAAGGTATTA+TGG	-	chr1_3:14383236-14383255	Msa0105760:CDS	25.0%
!!	TTTTAATACACTGAAGTTAC+TGG	-	chr1_3:14386425-14386444	Msa0105760:intron	25.0%
!!!	GTTACAAATACATGTTTTAG+TGG	+	chr1_3:14386470-14386489	None:intergenic	25.0%
!!	TTGTCAATGAGATTTCTTTT+AGG	-	chr1_3:14386575-14386594	Msa0105760:five_prime_UTR	25.0%
!	GAGAATTATTAGAATCCAAT+AGG	+	chr1_3:14386666-14386685	None:intergenic	25.0%
	CCTTGTGAGATAAAAAAGAA+AGG	+	chr1_3:14383231-14383250	None:intergenic	30.0%
!!!	CCTTTCTTTTTTATCTCACA+AGG	-	chr1_3:14383228-14383247	Msa0105760:CDS	30.0%
!	AAGGTATTATGGTGGTATTA+TGG	-	chr1_3:14383247-14383266	Msa0105760:CDS	30.0%
!!!	GTATCTGGTTTTTGATTATC+TGG	-	chr1_3:14383406-14383425	Msa0105760:intron	30.0%
	GTCTAAAAAAAACTGAGAGA+GGG	+	chr1_3:14383528-14383547	None:intergenic	30.0%
	AGTGTGAAAGAAATCTGATT+TGG	-	chr1_3:14383586-14383605	Msa0105760:intron	30.0%
	GATGAATGATGATACACTTA+TGG	-	chr1_3:14383681-14383700	Msa0105760:intron	30.0%
	AATGATGATACACTTATGGT+TGG	-	chr1_3:14383685-14383704	Msa0105760:intron	30.0%
	AAGAGAATATAAGGGAAAGA+AGG	+	chr1_3:14383731-14383750	None:intergenic	30.0%
	AGTATGGGAAGAGAATATAA+GGG	+	chr1_3:14383739-14383758	None:intergenic	30.0%
	AAGTATGGGAAGAGAATATA+AGG	+	chr1_3:14383740-14383759	None:intergenic	30.0%
	AGTTATTCTGGTCTAAGTAT+GGG	+	chr1_3:14383754-14383773	None:intergenic	30.0%
	TAGTTATTCTGGTCTAAGTA+TGG	+	chr1_3:14383755-14383774	None:intergenic	30.0%
!!!	TGGGTTTTTTCATAACACAA+GGG	+	chr1_3:14383809-14383828	None:intergenic	30.0%
!!!	ATGGGTTTTTTCATAACACA+AGG	+	chr1_3:14383810-14383829	None:intergenic	30.0%
	TGTGTTATGAAAAAACCCAT+TGG	-	chr1_3:14383810-14383829	Msa0105760:intron	30.0%
	AAGAGCAGTGATGTAATATA+TGG	-	chr1_3:14384108-14384127	Msa0105760:intron	30.0%
	AGTGATGTAATATATGGAGA+AGG	-	chr1_3:14384114-14384133	Msa0105760:intron	30.0%
	ATTTGAATACTCTAGCATCA+GGG	-	chr1_3:14384143-14384162	Msa0105760:intron	30.0%
	ATTAACAGAACTGTATGTGT+CGG	-	chr1_3:14384402-14384421	Msa0105760:intron	30.0%
	TATGTGGAATATGAACATCA+AGG	+	chr1_3:14384480-14384499	None:intergenic	30.0%
	GAACCTGAAATTACTTACAT+GGG	+	chr1_3:14384777-14384796	None:intergenic	30.0%
	AGAACCTGAAATTACTTACA+TGG	+	chr1_3:14384778-14384797	None:intergenic	30.0%
	ATTAACTAGCATGCTAAAGA+AGG	-	chr1_3:14384826-14384845	Msa0105760:intron	30.0%
	AATTATCAGTGTCCATTCTT+TGG	+	chr1_3:14384932-14384951	None:intergenic	30.0%
!!!	TGTACCAATTTTTTTCTCTC+TGG	-	chr1_3:14384992-14385011	Msa0105760:intron	30.0%
	AAAGCCAGAGAGAAAAAAAT+TGG	+	chr1_3:14384999-14385018	None:intergenic	30.0%
!!	CTTTGGAAACTTATCTTTTC+AGG	-	chr1_3:14385088-14385107	Msa0105760:intron	30.0%
!	GTTTTATGACCCAAAAGAAA+AGG	-	chr1_3:14385332-14385351	Msa0105760:intron	30.0%
	CAGTGAAAAATTAAGTGATG+AGG	+	chr1_3:14385940-14385959	None:intergenic	30.0%
	TAACTTTCATCTCAAAATCG+TGG	-	chr1_3:14386039-14386058	Msa0105760:intron	30.0%
	CTCAATTCATACTGAATTCA+TGG	-	chr1_3:14386084-14386103	Msa0105760:intron	30.0%
	CCTTGTGAGATAAAAAAGAA+AGG	+	chr1_3:14383231-14383250	None:intergenic	30.0%
!!!	CCTTTCTTTTTTATCTCACA+AGG	-	chr1_3:14383228-14383247	Msa0105760:CDS	30.0%
	ATTAGTGTCTCAGATGATAA+TGG	+	chr1_3:14386378-14386397	None:intergenic	30.0%
	TACTATGAAATTAGGTGCTA+AGG	-	chr1_3:14386490-14386509	Msa0105760:intron	30.0%
	TACGATAACAAAACACAACA+AGG	+	chr1_3:14386617-14386636	None:intergenic	30.0%
!!	TTGTTGTGTTTTGTTATCGT+AGG	-	chr1_3:14386616-14386635	Msa0105760:five_prime_UTR	30.0%
	AAGAGAGACTCACGAAATTT+GGG	+	chr1_3:14383203-14383222	None:intergenic	35.0%
	TAAGAGAGACTCACGAAATT+TGG	+	chr1_3:14383204-14383223	None:intergenic	35.0%
!	TATCTCACAAGGTATTATGG+TGG	-	chr1_3:14383239-14383258	Msa0105760:CDS	35.0%
!!	GTATTATGGTGTTGCATATG+AGG	-	chr1_3:14383261-14383280	Msa0105760:CDS	35.0%
	CCACCAAGTATATCTTGATA+AGG	+	chr1_3:14383337-14383356	None:intergenic	35.0%
	CCTTATCAAGATATACTTGG+TGG	-	chr1_3:14383334-14383353	Msa0105760:CDS	35.0%
	GGTCTAAAAAAAACTGAGAG+AGG	+	chr1_3:14383529-14383548	None:intergenic	35.0%
	GAAGTGAATATAAGTCGTAG+TGG	-	chr1_3:14383781-14383800	Msa0105760:intron	35.0%
!!!	GGTTTTTTCATAACACAAGG+GGG	+	chr1_3:14383807-14383826	None:intergenic	35.0%
!!!	GGGTTTTTTCATAACACAAG+GGG	+	chr1_3:14383808-14383827	None:intergenic	35.0%
!	ATGCGATAGTCTCTTTTGTA+TGG	-	chr1_3:14383884-14383903	Msa0105760:intron	35.0%
	TATTACATCACTGCTCTTCA+TGG	+	chr1_3:14384106-14384125	None:intergenic	35.0%
	CATTTGAATACTCTAGCATC+AGG	-	chr1_3:14384142-14384161	Msa0105760:intron	35.0%
	ACAGTTTACCTGTTCCATTT+GGG	+	chr1_3:14384261-14384280	None:intergenic	35.0%
	TACAGTTTACCTGTTCCATT+TGG	+	chr1_3:14384262-14384281	None:intergenic	35.0%
!!!	GCACTAGTTTTGATTGAAAG+AGG	-	chr1_3:14384343-14384362	Msa0105760:intron	35.0%
	ATATTCCACATACTCTTTGC+AGG	-	chr1_3:14384488-14384507	Msa0105760:intron	35.0%
!!	TATGCTCTTAGTTCTGTTGA+AGG	-	chr1_3:14384512-14384531	Msa0105760:intron	35.0%
!!	ATGCTCTTAGTTCTGTTGAA+GGG	-	chr1_3:14384513-14384532	Msa0105760:intron	35.0%
!	ATAGAAAATCTGAAGCTCGA+AGG	-	chr1_3:14384715-14384734	Msa0105760:intron	35.0%
!	TAGAAAATCTGAAGCTCGAA+GGG	-	chr1_3:14384716-14384735	Msa0105760:intron	35.0%
	CTGAAATTACTTACATGGGT+TGG	+	chr1_3:14384773-14384792	None:intergenic	35.0%
	CAACCCATGTAAGTAATTTC+AGG	-	chr1_3:14384771-14384790	Msa0105760:intron	35.0%
	TGTCAGCTATTTATGTTCTC+TGG	-	chr1_3:14384904-14384923	Msa0105760:intron	35.0%
	GTCAGCTATTTATGTTCTCT+GGG	-	chr1_3:14384905-14384924	Msa0105760:intron	35.0%
	TTTCATGACTTGAGCAATTG+TGG	+	chr1_3:14384956-14384975	None:intergenic	35.0%
!	TTTTATGCACTCTAGCATCA+GGG	-	chr1_3:14385016-14385035	Msa0105760:intron	35.0%
!!!	AAGTGTTGCCCTGATTTTTT+TGG	-	chr1_3:14385126-14385145	Msa0105760:intron	35.0%
	TTGAAAAGACACTGACAAGT+TGG	-	chr1_3:14385236-14385255	Msa0105760:intron	35.0%
!	AATGCATGCCCTTTTCTTTT+GGG	+	chr1_3:14385344-14385363	None:intergenic	35.0%
!	AAATGCATGCCCTTTTCTTT+TGG	+	chr1_3:14385345-14385364	None:intergenic	35.0%
	ATATTCCAAAAAACGAGACG+TGG	+	chr1_3:14385544-14385563	None:intergenic	35.0%
	TGTCAAATCCCGAAATTGTA+AGG	-	chr1_3:14385701-14385720	Msa0105760:intron	35.0%
	AAATCCCGAAATTGTAAGGT+CGG	-	chr1_3:14385705-14385724	Msa0105760:intron	35.0%
	TTACACATATGTGAGGTTTC+GGG	+	chr1_3:14385752-14385771	None:intergenic	35.0%
	CTTACACATATGTGAGGTTT+CGG	+	chr1_3:14385753-14385772	None:intergenic	35.0%
	AAACCTCACATATGTGTAAG+TGG	-	chr1_3:14385753-14385772	Msa0105760:intron	35.0%
	AATCCACTTACACATATGTG+AGG	+	chr1_3:14385759-14385778	None:intergenic	35.0%
	TGAAGTGCAAAAGAAGAGTT+GGG	+	chr1_3:14385849-14385868	None:intergenic	35.0%
	ATGAAGTGCAAAAGAAGAGT+TGG	+	chr1_3:14385850-14385869	None:intergenic	35.0%
	ATGAAGGGATAGAACGAAAA+TGG	+	chr1_3:14385886-14385905	None:intergenic	35.0%
	CGATGAACATGAATGATGAA+GGG	+	chr1_3:14385901-14385920	None:intergenic	35.0%
	ACGATGAACATGAATGATGA+AGG	+	chr1_3:14385902-14385921	None:intergenic	35.0%
	ATGTTGACACGTTGTTGAAT+TGG	+	chr1_3:14386150-14386169	None:intergenic	35.0%
	AAGAGAGACTCACGAAATTA+GGG	+	chr1_3:14386245-14386264	None:intergenic	35.0%
	TAAGAGAGACTCACGAAATT+AGG	+	chr1_3:14383204-14383223	None:intergenic	35.0%
!!	GTATTATGGTGTTGCATATG+AGG	-	chr1_3:14383261-14383280	Msa0105760:CDS	35.0%
!!!	CAAATACATGTTTTAGTGGC+TGG	+	chr1_3:14386466-14386485	None:intergenic	35.0%
!	CATTTTTCCCACTATCATCT+CGG	+	chr1_3:14386522-14386541	None:intergenic	35.0%
	TTGTGTTGTGTGTTTCCTAT+TGG	-	chr1_3:14386648-14386667	Msa0105760:intron	35.0%
	CAGTGACAAGCAATTGTATC+TGG	-	chr1_3:14383391-14383410	Msa0105760:intron	40.0%
!	CTTAGATCTGAAGAAGCGTA+TGG	-	chr1_3:14383430-14383449	Msa0105760:intron	40.0%
!!	AGAAGTCGCTCACTTTTACA+TGG	+	chr1_3:14383488-14383507	None:intergenic	40.0%
	CACCACAAAACAGAATTCAC+CGG	+	chr1_3:14383847-14383866	None:intergenic	40.0%
!	GTAGAACTCTGTCTCTTTTG+TGG	-	chr1_3:14383930-14383949	Msa0105760:intron	40.0%
!	CATATCCTGCAAAGAGTATG+TGG	+	chr1_3:14384496-14384515	None:intergenic	40.0%
!	CTTTTATGCACTCTAGCATC+AGG	-	chr1_3:14385015-14385034	Msa0105760:intron	40.0%
!!	CAAGTTGGCTTTCATTCTCA+CGG	-	chr1_3:14385251-14385270	Msa0105760:intron	40.0%
	GAGTACACCACTCAATTGAT+TGG	-	chr1_3:14385473-14385492	Msa0105760:intron	40.0%
!	CTACCAAAAGACGCATTGAT+TGG	-	chr1_3:14386193-14386212	Msa0105760:intron	40.0%
!	GAACCAATCAATGCGTCTTT+TGG	+	chr1_3:14386199-14386218	None:intergenic	40.0%
	TGAGAAGAGAGAGACAATGA+GGG	+	chr1_3:14386221-14386240	None:intergenic	40.0%
	TTGAGAAGAGAGAGACAATG+AGG	+	chr1_3:14386222-14386241	None:intergenic	40.0%
!!	GTTTTGTTATCGTAGGACGT+AGG	-	chr1_3:14386623-14386642	Msa0105760:five_prime_UTR	40.0%
	AGTGACTTTGTTAAGGTGAG+AGG	-	chr1_3:14386706-14386725	Msa0105760:intron	40.0%
	GATTTAAGCATCTCCTCTTG+AGG	+	chr1_3:14386835-14386854	None:intergenic	40.0%
	TGAGGATCGAATGAAGGAAC+TGG	+	chr1_3:14383179-14383198	None:intergenic	45.0%
!!	TTGGGTTGAGGATCGAATGA+AGG	+	chr1_3:14383185-14383204	None:intergenic	45.0%
!!	GACTCACGAAATTTGGGTTG+AGG	+	chr1_3:14383197-14383216	None:intergenic	45.0%
!	CTCCGGTGAATTCTGTTTTG+TGG	-	chr1_3:14383842-14383861	Msa0105760:intron	45.0%
	GAAGATTCCCTTCGTTGTTC+AGG	+	chr1_3:14384205-14384224	None:intergenic	45.0%
!	TGTTGTTTATGCGTGAGCAC+TGG	-	chr1_3:14384431-14384450	Msa0105760:intron	45.0%
!!	CTCTTAGTTCTGTTGAAGGG+CGG	-	chr1_3:14384516-14384535	Msa0105760:intron	45.0%
!!	TCTTAGTTCTGTTGAAGGGC+GGG	-	chr1_3:14384517-14384536	Msa0105760:intron	45.0%
!!	TTGTCTGGCTAGCCTTAGAT+AGG	+	chr1_3:14384563-14384582	None:intergenic	45.0%
	CGTCTATCCTGTAAATGCCA+TGG	-	chr1_3:14384743-14384762	Msa0105760:intron	45.0%
	TGGAATGCCATGGCATTTAC+AGG	+	chr1_3:14384753-14384772	None:intergenic	45.0%
!!	TTACATGGGTTGGAATGCCA+TGG	+	chr1_3:14384763-14384782	None:intergenic	45.0%
	TGTTCTCTGGGTCCAAAGAA+TGG	-	chr1_3:14384917-14384936	Msa0105760:intron	45.0%
!!	GCTGCATTTTTCTCTGGCTT+CGG	-	chr1_3:14385040-14385059	Msa0105760:intron	45.0%
!!!	CAAAGCCACGTCTCGTTTTT+TGG	-	chr1_3:14385536-14385555	Msa0105760:intron	45.0%
	CGGGATTTGACACTTGAACT+AGG	+	chr1_3:14385693-14385712	None:intergenic	45.0%
	ACGTCCGACCTTACAATTTC+GGG	+	chr1_3:14385712-14385731	None:intergenic	45.0%
	GACGTCCGACCTTACAATTT+CGG	+	chr1_3:14385713-14385732	None:intergenic	45.0%
	CCTCGTTCATCATCGTCAAT+CGG	-	chr1_3:14385990-14386009	Msa0105760:intron	45.0%
	GATACGACCGAGATGATAGT+GGG	-	chr1_3:14386512-14386531	Msa0105760:intron	45.0%
	AAGTCACTCGTCTGCAACAT+GGG	+	chr1_3:14386694-14386713	None:intergenic	45.0%
	AAAGTCACTCGTCTGCAACA+TGG	+	chr1_3:14386695-14386714	None:intergenic	45.0%
	GCAGACGAGTGACTTTGTTA+AGG	-	chr1_3:14386699-14386718	Msa0105760:intron	45.0%
	TTTGTTAAGGTGAGAGGCAG+TGG	-	chr1_3:14386712-14386731	Msa0105760:intron	45.0%
	TTGAGGAATTGGAACGGAGA+AGG	+	chr1_3:14386818-14386837	None:intergenic	45.0%
	CTCCTCTTGAGGAATTGGAA+CGG	+	chr1_3:14386824-14386843	None:intergenic	45.0%
	AGCATCTCCTCTTGAGGAAT+TGG	+	chr1_3:14386829-14386848	None:intergenic	45.0%
!	TTGGTGGTTGTGTCGATGAC+AGG	-	chr1_3:14383350-14383369	Msa0105760:CDS	50.0%
	TGTCACTGTGCACTGCATCA+TGG	+	chr1_3:14383379-14383398	None:intergenic	50.0%
!!	TCGCTCACTTTTACATGGCG+CGG	+	chr1_3:14383483-14383502	None:intergenic	50.0%
	CCGGAGCAGAATTCACCAAT+GGG	+	chr1_3:14383828-14383847	None:intergenic	50.0%
	CCCATTGGTGAATTCTGCTC+CGG	-	chr1_3:14383825-14383844	Msa0105760:intron	50.0%
	ACCGGAGCAGAATTCACCAA+TGG	+	chr1_3:14383829-14383848	None:intergenic	50.0%
	TGTCCTGTCCTGAACAACGA+AGG	-	chr1_3:14384194-14384213	Msa0105760:intron	50.0%
	GTCCTGTCCTGAACAACGAA+GGG	-	chr1_3:14384195-14384214	Msa0105760:intron	50.0%
	TTCCCTTCGTTGTTCAGGAC+AGG	+	chr1_3:14384200-14384219	None:intergenic	50.0%
	TGTGTACGCTGCTACCCAAA+TGG	-	chr1_3:14384244-14384263	Msa0105760:intron	50.0%
!!!	CAGGGTGCTGCATTTTTCTC+TGG	-	chr1_3:14385034-14385053	Msa0105760:intron	50.0%
!!	CATTTTTCTCTGGCTTCGGC+TGG	-	chr1_3:14385044-14385063	Msa0105760:intron	50.0%
	TTGGGGGCCAATCAATTGAG+TGG	+	chr1_3:14385483-14385502	None:intergenic	50.0%
	TAAGGTCGGACGTCATGACT+CGG	-	chr1_3:14385719-14385738	Msa0105760:intron	50.0%
	CCGATTGACGATGATGAACG+AGG	+	chr1_3:14385993-14386012	None:intergenic	50.0%
!	TTGGTAGCTCGAGCTGCAAT+CGG	+	chr1_3:14386180-14386199	None:intergenic	50.0%
	GGATACGACCGAGATGATAG+TGG	-	chr1_3:14386511-14386530	Msa0105760:intron	50.0%
	ACACTTCAACGGATGCTGCA+AGG	+	chr1_3:14386756-14386775	None:intergenic	50.0%
	GCATCCGTTGAAGTGTGTGT+CGG	-	chr1_3:14386760-14386779	Msa0105760:intron	50.0%
	GAAGCCGACACACACTTCAA+CGG	+	chr1_3:14386767-14386786	None:intergenic	50.0%
	CTCCGTTCCAATTCCTCAAG+AGG	-	chr1_3:14386819-14386838	Msa0105760:intron	50.0%
	TGGGTAGCAGCGTACACATC+TGG	+	chr1_3:14384242-14384261	None:intergenic	55.0%
	CGCTGCTACCCAAATGGAAC+AGG	-	chr1_3:14384250-14384269	Msa0105760:intron	55.0%
!!	TGTTGAAGGGCGGGTTGCAA+TGG	-	chr1_3:14384526-14384545	Msa0105760:intron	55.0%
	AAGGTCGGACGTCATGACTC+GGG	-	chr1_3:14385720-14385739	Msa0105760:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	14383159	14386876	14383159	ID=Msa0105760;Name=Msa0105760
chr1_3	mRNA	14383159	14386876	14383159	ID=Msa0105760-mRNA-1;Parent=Msa0105760;Name=Msa0105760-mRNA-1;_AED=0.31;_eAED=0.60;_QI=190\|0.66\|0.75\|1\|0.33\|0.25\|4\|0\|127
chr1_3	exon	14383159	14383397	14383159	ID=Msa0105760-mRNA-1:exon:5663;Parent=Msa0105760-mRNA-1
chr1_3	exon	14385764	14385924	14385764	ID=Msa0105760-mRNA-1:exon:5662;Parent=Msa0105760-mRNA-1
chr1_3	exon	14386541	14386663	14386541	ID=Msa0105760-mRNA-1:exon:5661;Parent=Msa0105760-mRNA-1
chr1_3	exon	14386826	14386876	14386826	ID=Msa0105760-mRNA-1:exon:5660;Parent=Msa0105760-mRNA-1
chr1_3	five_prime_UTR	14386826	14386876	14386826	ID=Msa0105760-mRNA-1:five_prime_utr;Parent=Msa0105760-mRNA-1
chr1_3	five_prime_UTR	14386541	14386663	14386541	ID=Msa0105760-mRNA-1:five_prime_utr;Parent=Msa0105760-mRNA-1
chr1_3	five_prime_UTR	14385909	14385924	14385909	ID=Msa0105760-mRNA-1:five_prime_utr;Parent=Msa0105760-mRNA-1
chr1_3	CDS	14385764	14385908	14385764	ID=Msa0105760-mRNA-1:cds;Parent=Msa0105760-mRNA-1
chr1_3	CDS	14383159	14383397	14383159	ID=Msa0105760-mRNA-1:cds;Parent=Msa0105760-mRNA-1

Gene Sequence

>Msa0105760

ATGGAGAAGGTAGTGCATTTGAATACTCTAGCATCAGGGAATCTTAATGTTTATGACTTGAGGAACATGTCCTGTCCTGAACAACGAAGGGAATCTTCATTGAAATATCAAACCAGATGTGTACGCTGCTACCCAAATGGAACAGGACGTAGGCTTTGTGTTGTGTGTTTCCTATTGGATTCTAATAATTCTCTCTCTCCCATGTTGCAGACGAGTGACTTTGTTAAGGTGAGAGGCAGTGGCAAGTTTGAAGTTTACTTCCTTGCAGCATCCGTTGAAGTGTGTGTCGGCTTCAAATATGATTCAACAATTGTGTTGATAACCTTCTCCGTTCCAATTCCTCAAGAGGAGATGCTTAAATCGTTAATAGAAATCCGAGCTTAA

Protein sequence

>Msa0105760

MEKVVHLNTLASGNLNVYDLRNMSCPEQRRESSLKYQTRCVRCYPNGTGRRLCVVCFLLDSNNSLSPMLQTSDFVKVRGSGKFEVYFLAASVEVCVGFKYDSTIVLITFSVPIPQEEMLKSLIEIRA*