AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0976670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAGCTTTAGGTACTTTC+TGG 0.173850 6_4:-10839616 None:intergenic
ATGGATGTCAAGAACATTTA+TGG 0.186313 6_4:+10837760 Msa0976670:CDS
CATCTTAACTTATGAGCTTT+AGG 0.226197 6_4:-10839626 None:intergenic
ACTTATCAGATATATGTATT+TGG 0.234123 6_4:+10839413 Msa0976670:three_prime_UTR
AGTTTGGTGAAACCCGTAAT+TGG 0.252402 6_4:+10837810 Msa0976670:CDS
TATTCTATATAAGTTTAGTA+TGG 0.257016 6_4:+10839547 Msa0976670:three_prime_UTR
TTAGTCTAAGTTGTTTAATA+TGG 0.314650 6_4:+10836727 Msa0976670:CDS
CTGTAGGTTCCTTGGGTGGC+TGG 0.316817 6_4:+10837186 Msa0976670:CDS
AGCAGTTTCAGAAGTGATTA+AGG 0.337778 6_4:+10838073 Msa0976670:CDS
TCACCAAACTTCTTCTGATT+CGG 0.350333 6_4:-10837797 None:intergenic
GTAGAGCCCTGTCCCAATTA+CGG 0.357028 6_4:-10837823 None:intergenic
GAGAATTAAGAGCTAAAGAT+TGG 0.366302 6_4:+10837225 Msa0976670:CDS
TATTGATGTATATATTCATT+TGG 0.368474 6_4:+10839467 Msa0976670:three_prime_UTR
TAGAGCCCTGTCCCAATTAC+GGG 0.368501 6_4:-10837822 None:intergenic
GTGGTTGCTGTAGGTTCCTT+GGG 0.382965 6_4:+10837179 Msa0976670:CDS
GTTAGCAGAGGGATAAATTC+CGG 0.388082 6_4:+10838966 Msa0976670:CDS
GAGCCGAATCAGAAGAAGTT+TGG 0.388740 6_4:+10837794 Msa0976670:CDS
AACATTTATGGGTAAGGATT+CGG 0.394860 6_4:+10837772 Msa0976670:CDS
GTACGAAAACGAGCTCTTAA+CGG 0.401018 6_4:-10839362 None:intergenic
GAATTTATCCCTCTGCTAAC+CGG 0.421459 6_4:-10838963 None:intergenic
GGTGGTTGCTGTAGGTTCCT+TGG 0.423211 6_4:+10837178 Msa0976670:CDS
GTTTGGTGAAACCCGTAATT+GGG 0.430111 6_4:+10837811 Msa0976670:CDS
TTAGCAGAGGGATAAATTCC+GGG 0.430583 6_4:+10838967 Msa0976670:CDS
CGGATAGTGCCCGTTCCAAC+TGG 0.436014 6_4:-10838858 None:intergenic
GGAAATATTTATATATATAC+CGG 0.439694 6_4:+10838944 Msa0976670:CDS
GTCAAGAACATTTATGGGTA+AGG 0.441957 6_4:+10837766 Msa0976670:CDS
AGGTTCCCGCCAGTTGGAAC+GGG 0.453963 6_4:+10838849 Msa0976670:CDS
AACCCAACTGACGGGGATAC+CGG 0.456317 6_4:-10838911 None:intergenic
CTGGCGGGAACCCAACTGAC+GGG 0.467855 6_4:-10838919 None:intergenic
CGGACTCCTCTGATTATTGT+GGG 0.475581 6_4:-10838891 None:intergenic
GTGAAACCCGTAATTGGGAC+AGG 0.476254 6_4:+10837816 Msa0976670:CDS
TGGATGTCAAGAACATTTAT+GGG 0.484189 6_4:+10837761 Msa0976670:CDS
ACTAAAGTTTGAATTATCAC+TGG 0.489017 6_4:-10836709 None:intergenic
AAGGTTCCCGCCAGTTGGAA+CGG 0.491611 6_4:+10838848 Msa0976670:CDS
TATATATAAATATTTCCAAC+TGG 0.492937 6_4:-10838938 None:intergenic
CCGGACTCCTCTGATTATTG+TGG 0.494451 6_4:-10838892 None:intergenic
GTCCGGTATCCCCGTCAGTT+GGG 0.497302 6_4:+10838909 Msa0976670:CDS
AGTCCGGTATCCCCGTCAGT+TGG 0.502020 6_4:+10838908 Msa0976670:CDS
AATTCCGGGGTTACTCCACC+TGG 0.504121 6_4:+10838981 Msa0976670:CDS
ATACATATAATATCTTCATC+TGG 0.510595 6_4:-10839384 None:intergenic
TACATCAGATAAAATATCAA+TGG 0.511881 6_4:-10839436 None:intergenic
TATAAATATTTCCAACTGGC+GGG 0.513776 6_4:-10838934 None:intergenic
TCAGTTGGGTTCCCGCCAGT+TGG 0.513899 6_4:+10838923 Msa0976670:CDS
ATGTGCGTTAAATTTAGTAC+TGG 0.522289 6_4:-10839518 None:intergenic
TTGAATTATCACTGGAAGTG+TGG 0.525225 6_4:-10836701 None:intergenic
TACAAAAGGTTCCCGCCAGT+TGG 0.525546 6_4:+10838843 Msa0976670:CDS
GGAGGTAGATACGCAGTCGA+AGG 0.526370 6_4:+10839334 Msa0976670:CDS
GGGACAGGGCTCTACTAAAA+CGG 0.527495 6_4:+10837831 Msa0976670:CDS
AGAATTAAGAGCTAAAGATT+GGG 0.530417 6_4:+10837226 Msa0976670:CDS
ATTCTATATAAGTTTAGTAT+GGG 0.530951 6_4:+10839548 Msa0976670:three_prime_UTR
TAGTGCCCGTTCCAACTGGC+GGG 0.539181 6_4:-10838854 None:intergenic
CTCGCCAGTTAGGATACAAA+AGG 0.543485 6_4:+10838829 Msa0976670:intron
ACTGGCGGGAACCCAACTGA+CGG 0.559372 6_4:-10838920 None:intergenic
ATATAAATATTTCCAACTGG+CGG 0.563688 6_4:-10838935 None:intergenic
CCACAATAATCAGAGGAGTC+CGG 0.569141 6_4:+10838892 Msa0976670:CDS
TATATATACCGGTTAGCAGA+GGG 0.579006 6_4:+10838955 Msa0976670:CDS
GTTGCTGTAGGTTCCTTGGG+TGG 0.585662 6_4:+10837182 Msa0976670:CDS
CTCATAATTCCAGCCACCCA+AGG 0.592192 6_4:-10837195 None:intergenic
GAGGTAGATACGCAGTCGAA+GGG 0.595743 6_4:+10839335 Msa0976670:CDS
ATAGTGCCCGTTCCAACTGG+CGG 0.609125 6_4:-10838855 None:intergenic
TGCTGATAGTTTATATGATG+AGG 0.614482 6_4:+10836650 Msa0976670:CDS
ATATATATACCGGTTAGCAG+AGG 0.620565 6_4:+10838954 Msa0976670:CDS
TTATTGTGGGGTCATCCTCA+CGG 0.627690 6_4:-10838878 None:intergenic
ATTCCGGGGTTACTCCACCT+GGG 0.634402 6_4:+10838982 Msa0976670:CDS
TGGCGGGAACCCAACTGACG+GGG 0.637275 6_4:-10838918 None:intergenic
GTGAAAGAGGTGGTTGCTGT+AGG 0.642606 6_4:+10837170 Msa0976670:intron
AAACCCAGGTGGAGTAACCC+CGG 0.643098 6_4:-10838985 None:intergenic
AACAGGTTGCTCGAATCAAG+AGG 0.645586 6_4:+10839313 Msa0976670:CDS
TAGCAGAGGGATAAATTCCG+GGG 0.653016 6_4:+10838968 Msa0976670:CDS
GGACTCCTCTGATTATTGTG+GGG 0.668662 6_4:-10838890 None:intergenic
TGAAACCCGTAATTGGGACA+GGG 0.670677 6_4:+10837817 Msa0976670:CDS
GATGACCCCACAATAATCAG+AGG 0.677476 6_4:+10838885 Msa0976670:CDS
AGGTTGCTCGAATCAAGAGG+AGG 0.715846 6_4:+10839316 Msa0976670:CDS
TGGAACGGGCACTATCCGTG+AGG 0.748735 6_4:+10838863 Msa0976670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCTGTAAAATAAATAAA+TGG - chr6_4:10839294-10839313 None:intergenic 10.0%
!! TTATATATGAAAAAGCAAAA+TGG + chr6_4:10838675-10838694 Msa0976670:intron 15.0%
!! TATATATGAAAAAGCAAAAT+GGG + chr6_4:10838676-10838695 Msa0976670:intron 15.0%
!! TATATATAAATATTTCCAAC+TGG - chr6_4:10838941-10838960 None:intergenic 15.0%
!! GGAAATATTTATATATATAC+CGG + chr6_4:10838944-10838963 Msa0976670:CDS 15.0%
!!! TAAAATAAATAAATGGATTG+GGG - chr6_4:10839287-10839306 None:intergenic 15.0%
!!! GTAAAATAAATAAATGGATT+GGG - chr6_4:10839288-10839307 None:intergenic 15.0%
!! TGTAAAATAAATAAATGGAT+TGG - chr6_4:10839289-10839308 None:intergenic 15.0%
!!! TATTTATTTTACAGATTAAC+AGG + chr6_4:10839296-10839315 Msa0976670:intron 15.0%
!! TATTGATGTATATATTCATT+TGG + chr6_4:10839467-10839486 Msa0976670:three_prime_UTR 15.0%
!! TATTCTATATAAGTTTAGTA+TGG + chr6_4:10839547-10839566 Msa0976670:three_prime_UTR 15.0%
!! ATTCTATATAAGTTTAGTAT+GGG + chr6_4:10839548-10839567 Msa0976670:three_prime_UTR 15.0%
!! TTAGTCTAAGTTGTTTAATA+TGG + chr6_4:10836727-10836746 Msa0976670:CDS 20.0%
!! GAAATTGTAAAACTCATAAA+AGG - chr6_4:10837127-10837146 None:intergenic 20.0%
!! ATCAAAACAACTTAAATTCA+CGG - chr6_4:10838018-10838037 None:intergenic 20.0%
!!! AATTTAAGTTGTTTTGATGT+TGG + chr6_4:10838020-10838039 Msa0976670:intron 20.0%
!! AACATAGAAATACACATTAA+CGG - chr6_4:10838210-10838229 None:intergenic 20.0%
!!! TTAATGTGTATTTCTATGTT+AGG + chr6_4:10838210-10838229 Msa0976670:intron 20.0%
!! TTAAAAATCCGTTTCAAATA+TGG + chr6_4:10838333-10838352 Msa0976670:intron 20.0%
!!! ACATGATTTAGTTTGTTATA+TGG + chr6_4:10838479-10838498 Msa0976670:intron 20.0%
!! TATTGAAAACAAGTGATTTA+AGG - chr6_4:10838509-10838528 None:intergenic 20.0%
!!! TAAATCACTTGTTTTCAATA+AGG + chr6_4:10838509-10838528 Msa0976670:intron 20.0%
!! CATTAATGATTTATAAGTTG+TGG + chr6_4:10838795-10838814 Msa0976670:intron 20.0%
!!! TATTATCTGAGTTGATTTTA+CGG - chr6_4:10839013-10839032 None:intergenic 20.0%
!! CTAACATTTCTAACATAATA+TGG + chr6_4:10839047-10839066 Msa0976670:intron 20.0%
!! ATACATATAATATCTTCATC+TGG - chr6_4:10839387-10839406 None:intergenic 20.0%
!! ACTTATCAGATATATGTATT+TGG + chr6_4:10839413-10839432 Msa0976670:three_prime_UTR 20.0%
!! TACATCAGATAAAATATCAA+TGG - chr6_4:10839439-10839458 None:intergenic 20.0%
! ACTAAAGTTTGAATTATCAC+TGG - chr6_4:10836712-10836731 None:intergenic 25.0%
!!! TGTTTAATATGGTCATTTTC+AGG + chr6_4:10836738-10836757 Msa0976670:CDS 25.0%
!!! GCCTTACAAGATATTTTAAA+AGG + chr6_4:10836858-10836877 Msa0976670:intron 25.0%
!!! GCCTTTTAAAATATCTTGTA+AGG - chr6_4:10836862-10836881 None:intergenic 25.0%
!! TGTGGGATTAAATTTTTCTT+TGG - chr6_4:10837005-10837024 None:intergenic 25.0%
! TCTAATTCTTAGAAGTTTCA+AGG - chr6_4:10837048-10837067 None:intergenic 25.0%
! TAAAACTCATAAAAGGTTGA+AGG - chr6_4:10837120-10837139 None:intergenic 25.0%
! TTACAATTTCTGCTTAAAAG+TGG + chr6_4:10837137-10837156 Msa0976670:intron 25.0%
! AGAATTAAGAGCTAAAGATT+GGG + chr6_4:10837226-10837245 Msa0976670:CDS 25.0%
! TTGAAAACTTAAGTTACTAC+AGG + chr6_4:10837322-10837341 Msa0976670:intron 25.0%
!!! ATGTTGTTTTTAGCTTAAGT+TGG + chr6_4:10837355-10837374 Msa0976670:intron 25.0%
!!! TTTTAAGGTAAAAGCTGTTT+TGG + chr6_4:10837442-10837461 Msa0976670:intron 25.0%
!!! CTGTTTTGGAATTTATGTTA+AGG + chr6_4:10837456-10837475 Msa0976670:intron 25.0%
! GGAATCAAAAGAGATAATTA+TGG + chr6_4:10837517-10837536 Msa0976670:intron 25.0%
! TATATAAGCTAAAACTCCAA+AGG - chr6_4:10838125-10838144 None:intergenic 25.0%
!! GATGTTGGAAAAATGTTTTA+AGG + chr6_4:10838236-10838255 Msa0976670:intron 25.0%
!!! GATTTTTAAGCAAACAAACA+CGG - chr6_4:10838322-10838341 None:intergenic 25.0%
! AACATGGCAACTTAAAAATT+TGG + chr6_4:10838447-10838466 Msa0976670:intron 25.0%
! TCATATATTAGAACTCATGT+TGG - chr6_4:10838617-10838636 None:intergenic 25.0%
! ATATAAATATTTCCAACTGG+CGG - chr6_4:10838938-10838957 None:intergenic 25.0%
! AAAACTGTATAAACCCAAAA+AGG + chr6_4:10839172-10839191 Msa0976670:intron 25.0%
! AAACTGTATAAACCCAAAAA+GGG + chr6_4:10839173-10839192 Msa0976670:intron 25.0%
TGCTGATAGTTTATATGATG+AGG + chr6_4:10836650-10836669 Msa0976670:CDS 30.0%
ATTGACAGTGTATTTAAGCA+GGG - chr6_4:10836781-10836800 None:intergenic 30.0%
AATTGACAGTGTATTTAAGC+AGG - chr6_4:10836782-10836801 None:intergenic 30.0%
! GGGATTAAATTTTTCTTTGG+AGG - chr6_4:10837002-10837021 None:intergenic 30.0%
ACTTTGAATCATTTGCATGT+GGG - chr6_4:10837022-10837041 None:intergenic 30.0%
TACTTTGAATCATTTGCATG+TGG - chr6_4:10837023-10837042 None:intergenic 30.0%
GAGAATTAAGAGCTAAAGAT+TGG + chr6_4:10837225-10837244 Msa0976670:CDS 30.0%
! AAGATTGGGTGTTTAGATTT+TGG + chr6_4:10837240-10837259 Msa0976670:intron 30.0%
ATGTTTAAGCTTAAGCTGTT+TGG + chr6_4:10837286-10837305 Msa0976670:intron 30.0%
AACTTAAGTTACTACAGGTA+TGG + chr6_4:10837327-10837346 Msa0976670:intron 30.0%
!! AACTTTTGAAAGAAGAAACC+TGG + chr6_4:10837390-10837409 Msa0976670:intron 30.0%
! TGAGATAAGCTGAGATTTTA+AGG + chr6_4:10837427-10837446 Msa0976670:intron 30.0%
!! AATGATTAGTTTGAGCTGTA+AGG + chr6_4:10837495-10837514 Msa0976670:intron 30.0%
!! ATGATTAGTTTGAGCTGTAA+GGG + chr6_4:10837496-10837515 Msa0976670:intron 30.0%
! TGATACTGATTGTGCATTAT+TGG + chr6_4:10837559-10837578 Msa0976670:intron 30.0%
!!! CTGGTCTATAGTTTTAAAGT+TGG + chr6_4:10837586-10837605 Msa0976670:intron 30.0%
ATGGATGTCAAGAACATTTA+TGG + chr6_4:10837760-10837779 Msa0976670:CDS 30.0%
TGGATGTCAAGAACATTTAT+GGG + chr6_4:10837761-10837780 Msa0976670:CDS 30.0%
AACATTTATGGGTAAGGATT+CGG + chr6_4:10837772-10837791 Msa0976670:CDS 30.0%
! ATGGTTAGCTAACGAAATTA+CGG + chr6_4:10837900-10837919 Msa0976670:intron 30.0%
!! AATTACGGACATTTTGATAC+CGG + chr6_4:10837915-10837934 Msa0976670:intron 30.0%
TTCTATGTTAGGATTGATGT+TGG + chr6_4:10838221-10838240 Msa0976670:intron 30.0%
! TTGAGTTTTCAAAATTGCCA+AGG - chr6_4:10838289-10838308 None:intergenic 30.0%
ACAAATAGTTGCTTATCATG+TGG + chr6_4:10838368-10838387 Msa0976670:intron 30.0%
! GAAAACAAGTGATTTAAGGT+TGG - chr6_4:10838505-10838524 None:intergenic 30.0%
ACTCATGTTGGAAAATCATA+TGG - chr6_4:10838605-10838624 None:intergenic 30.0%
TTATCTCTCTTGTCAATGTA+TGG - chr6_4:10838643-10838662 None:intergenic 30.0%
TTTATGAATGTTAACCTTCC+GGG - chr6_4:10838713-10838732 None:intergenic 30.0%
GTTTATGAATGTTAACCTTC+CGG - chr6_4:10838714-10838733 None:intergenic 30.0%
TATAAATATTTCCAACTGGC+GGG - chr6_4:10838937-10838956 None:intergenic 30.0%
ATGATTTCAGCATTAGTATC+AGG + chr6_4:10839096-10839115 Msa0976670:intron 30.0%
ATGTGCGTTAAATTTAGTAC+TGG - chr6_4:10839521-10839540 None:intergenic 30.0%
CATCTTAACTTATGAGCTTT+AGG - chr6_4:10839629-10839648 None:intergenic 30.0%
TTGAATTATCACTGGAAGTG+TGG - chr6_4:10836704-10836723 None:intergenic 35.0%
TTATCCTTGAGACTTAAGTG+AGG + chr6_4:10836819-10836838 Msa0976670:intron 35.0%
TATCCTTGAGACTTAAGTGA+GGG + chr6_4:10836820-10836839 Msa0976670:intron 35.0%
AGGAAAATGAAGGAAAAGTG+AGG - chr6_4:10836890-10836909 None:intergenic 35.0%
AGAGACATAGAGGAAAATGA+AGG - chr6_4:10836900-10836919 None:intergenic 35.0%
GGAAAAAGTTGAAGGATTGA+TGG - chr6_4:10836981-10837000 None:intergenic 35.0%
! TCTTTGGAGGAAAAAGTTGA+AGG - chr6_4:10836989-10837008 None:intergenic 35.0%
GAAAAATGAAGGGGTTAATC+TGG - chr6_4:10837071-10837090 None:intergenic 35.0%
AACATGGGAGAAAAATGAAG+GGG - chr6_4:10837080-10837099 None:intergenic 35.0%
CAACATGGGAGAAAAATGAA+GGG - chr6_4:10837081-10837100 None:intergenic 35.0%
ACTCATAAAAGGTTGAAGGA+GGG - chr6_4:10837116-10837135 None:intergenic 35.0%
AACTCATAAAAGGTTGAAGG+AGG - chr6_4:10837117-10837136 None:intergenic 35.0%
ATTGTGCATTATTGGATTGC+TGG + chr6_4:10837567-10837586 Msa0976670:intron 35.0%
!! TGCTATGTAGAAGTGCTTAA+TGG + chr6_4:10837633-10837652 Msa0976670:intron 35.0%
!! GCTATGTAGAAGTGCTTAAT+GGG + chr6_4:10837634-10837653 Msa0976670:intron 35.0%
AATGGGTGATTAAGCTATCT+TGG + chr6_4:10837651-10837670 Msa0976670:intron 35.0%
! AAAGCTGATGGAAGTGATTT+TGG + chr6_4:10837675-10837694 Msa0976670:intron 35.0%
! AAGCTGATGGAAGTGATTTT+GGG + chr6_4:10837676-10837695 Msa0976670:intron 35.0%
GCATATATATCACAGAACCA+AGG - chr6_4:10837736-10837755 None:intergenic 35.0%
! TGGTTCTGTGATATATATGC+AGG + chr6_4:10837736-10837755 Msa0976670:intron 35.0%
CTGTGATATATATGCAGGTA+TGG + chr6_4:10837741-10837760 Msa0976670:intron 35.0%
GTCAAGAACATTTATGGGTA+AGG + chr6_4:10837766-10837785 Msa0976670:CDS 35.0%
TCACCAAACTTCTTCTGATT+CGG - chr6_4:10837800-10837819 None:intergenic 35.0%
! TCAAGTGGTTTTTGATGCTA+TGG + chr6_4:10837881-10837900 Msa0976670:intron 35.0%
!! TTTGGTCAAGTATTGAATCC+TGG + chr6_4:10837948-10837967 Msa0976670:intron 35.0%
AGCAGTTTCAGAAGTGATTA+AGG + chr6_4:10838073-10838092 Msa0976670:CDS 35.0%
TAAGCTAAAACTCCAAAGGT+GGG - chr6_4:10838121-10838140 None:intergenic 35.0%
ATAAGCTAAAACTCCAAAGG+TGG - chr6_4:10838122-10838141 None:intergenic 35.0%
AAATACACATTAACGGCAAG+GGG - chr6_4:10838203-10838222 None:intergenic 35.0%
GAAATACACATTAACGGCAA+GGG - chr6_4:10838204-10838223 None:intergenic 35.0%
AGAAATACACATTAACGGCA+AGG - chr6_4:10838205-10838224 None:intergenic 35.0%
AAATCCGTTTCAAATATGGC+TGG + chr6_4:10838337-10838356 Msa0976670:intron 35.0%
AATCCGTTTCAAATATGGCT+GGG + chr6_4:10838338-10838357 Msa0976670:intron 35.0%
GAAGCAAGTGTTTCAAACTT+TGG - chr6_4:10838408-10838427 None:intergenic 35.0%
! ATATATATACCGGTTAGCAG+AGG + chr6_4:10838954-10838973 Msa0976670:CDS 35.0%
! TATATATACCGGTTAGCAGA+GGG + chr6_4:10838955-10838974 Msa0976670:CDS 35.0%
! TTGATTTTACGGATAAACCC+AGG - chr6_4:10839002-10839021 None:intergenic 35.0%
! GTTTTGTCGTGCATAAATGA+GGG - chr6_4:10839157-10839176 None:intergenic 35.0%
!! AGTTTTGTCGTGCATAAATG+AGG - chr6_4:10839158-10839177 None:intergenic 35.0%
! CTCTAATCTCAACCCTTTTT+GGG - chr6_4:10839188-10839207 None:intergenic 35.0%
! TCTCTAATCTCAACCCTTTT+TGG - chr6_4:10839189-10839208 None:intergenic 35.0%
!! TATGAGCTTTAGGTACTTTC+TGG - chr6_4:10839619-10839638 None:intergenic 35.0%
AGACTTAAGTGAGGGCAAAA+TGG + chr6_4:10836828-10836847 Msa0976670:intron 40.0%
ATGAAGGAAAAGTGAGGTCT+TGG - chr6_4:10836884-10836903 None:intergenic 40.0%
!! CTGTTTCTAGAGAGACATAG+AGG - chr6_4:10836910-10836929 None:intergenic 40.0%
!! AGTTGAAGGATTGATGGTGA+TGG - chr6_4:10836975-10836994 None:intergenic 40.0%
CCAACATGGGAGAAAAATGA+AGG - chr6_4:10837082-10837101 None:intergenic 40.0%
!! CCTTCATTTTTCTCCCATGT+TGG + chr6_4:10837079-10837098 Msa0976670:intron 40.0%
!! TGGCCTTGTATATGTGAAAG+AGG + chr6_4:10837157-10837176 Msa0976670:intron 40.0%
CCACCTCTTTCACATATACA+AGG - chr6_4:10837163-10837182 None:intergenic 40.0%
CCTTGTATATGTGAAAGAGG+TGG + chr6_4:10837160-10837179 Msa0976670:intron 40.0%
! CTCAGTTCTGATTTCTTTCC+AGG - chr6_4:10837411-10837430 None:intergenic 40.0%
AGCTATCTTGGAAAAGCTGA+TGG + chr6_4:10837663-10837682 Msa0976670:intron 40.0%
! AGCTGATGGAAGTGATTTTG+GGG + chr6_4:10837677-10837696 Msa0976670:intron 40.0%
!! TGGAAGTGATTTTGGGGAAT+TGG + chr6_4:10837683-10837702 Msa0976670:intron 40.0%
!! TGATTTTGGGGAATTGGTGA+TGG + chr6_4:10837689-10837708 Msa0976670:intron 40.0%
! AGTTTGGTGAAACCCGTAAT+TGG + chr6_4:10837810-10837829 Msa0976670:CDS 40.0%
! GTTTGGTGAAACCCGTAATT+GGG + chr6_4:10837811-10837830 Msa0976670:CDS 40.0%
TTGACCAAAATCAGCGAAAC+CGG - chr6_4:10837937-10837956 None:intergenic 40.0%
!! CAAGTATTGAATCCTGGAGA+TGG + chr6_4:10837954-10837973 Msa0976670:intron 40.0%
TTGAAGTACGAAGACTGAAG+TGG + chr6_4:10837979-10837998 Msa0976670:intron 40.0%
TGAAGTACGAAGACTGAAGT+GGG + chr6_4:10837980-10837999 Msa0976670:intron 40.0%
!! TTTTGATGTTGGCTGAAGAG+CGG + chr6_4:10838031-10838050 Msa0976670:intron 40.0%
AGGTGGGAAAACTAACTACT+AGG - chr6_4:10838105-10838124 None:intergenic 40.0%
!!! GTAGTTAGTTTTCCCACCTT+TGG + chr6_4:10838106-10838125 Msa0976670:intron 40.0%
AGTTTCATGTCACTGAACCT+TGG + chr6_4:10838269-10838288 Msa0976670:intron 40.0%
! CATGTTGAAGCAGGTTGTTT+TGG - chr6_4:10838433-10838452 None:intergenic 40.0%
CAAAACAACCTGCTTCAACA+TGG + chr6_4:10838431-10838450 Msa0976670:intron 40.0%
! TTAAGTTGCCATGTTGAAGC+AGG - chr6_4:10838442-10838461 None:intergenic 40.0%
!! TAAGGTGCCACGTGATTTTA+TGG + chr6_4:10838527-10838546 Msa0976670:intron 40.0%
! CACGTGATTTTATGGTCATG+CGG + chr6_4:10838535-10838554 Msa0976670:intron 40.0%
! GGAACCTTTTGTATCCTAAC+TGG - chr6_4:10838836-10838855 None:intergenic 40.0%
GAATTTATCCCTCTGCTAAC+CGG - chr6_4:10838966-10838985 None:intergenic 40.0%
GTTAGCAGAGGGATAAATTC+CGG + chr6_4:10838966-10838985 Msa0976670:CDS 40.0%
TTAGCAGAGGGATAAATTCC+GGG + chr6_4:10838967-10838986 Msa0976670:CDS 40.0%
! ATTTTACGGATAAACCCAGG+TGG - chr6_4:10838999-10839018 None:intergenic 40.0%
GTACGAAAACGAGCTCTTAA+CGG - chr6_4:10839365-10839384 None:intergenic 40.0%
TTGCCCTCACTTAAGTCTCA+AGG - chr6_4:10836826-10836845 None:intergenic 45.0%
AGAGAGAGAAAGGAGAAGGA+GGG - chr6_4:10836942-10836961 None:intergenic 45.0%
TCCTTCTCCTTTCTCTCTCT+CGG + chr6_4:10836942-10836961 Msa0976670:intron 45.0%
GTTGAAGGAGGGTTTAAGCT+CGG - chr6_4:10837105-10837124 None:intergenic 45.0%
AGTTGGCAGAAGCTGAAATG+AGG + chr6_4:10837603-10837622 Msa0976670:intron 45.0%
TGTTGTAAGCTGTTGTGCCT+TGG + chr6_4:10837716-10837735 Msa0976670:intron 45.0%
GAGCCGAATCAGAAGAAGTT+TGG + chr6_4:10837794-10837813 Msa0976670:CDS 45.0%
TGAAACCCGTAATTGGGACA+GGG + chr6_4:10837817-10837836 Msa0976670:CDS 45.0%
AGAACTCTCTCCCTGTAACT+CGG + chr6_4:10837856-10837875 Msa0976670:intron 45.0%
CCACTTGATTCCGAGTTACA+GGG - chr6_4:10837869-10837888 None:intergenic 45.0%
ACCACTTGATTCCGAGTTAC+AGG - chr6_4:10837870-10837889 None:intergenic 45.0%
!!! GATACCGGTTTCGCTGATTT+TGG + chr6_4:10837930-10837949 Msa0976670:intron 45.0%
CGTACTTCAAAACCATCTCC+AGG - chr6_4:10837969-10837988 None:intergenic 45.0%
CAGCCCAGCCATATTTGAAA+CGG - chr6_4:10838344-10838363 None:intergenic 45.0%
CGCATGACCATAAAATCACG+TGG - chr6_4:10838537-10838556 None:intergenic 45.0%
AAATGGGTAGATGACTGACC+CGG + chr6_4:10838692-10838711 Msa0976670:intron 45.0%
!! TTTTGCTATCCTCGCCAGTT+AGG + chr6_4:10838819-10838838 Msa0976670:intron 45.0%
! CTTTTGTATCCTAACTGGCG+AGG - chr6_4:10838831-10838850 None:intergenic 45.0%
CTCGCCAGTTAGGATACAAA+AGG + chr6_4:10838829-10838848 Msa0976670:intron 45.0%
TTATTGTGGGGTCATCCTCA+CGG - chr6_4:10838881-10838900 None:intergenic 45.0%
GATGACCCCACAATAATCAG+AGG + chr6_4:10838885-10838904 Msa0976670:CDS 45.0%
GGACTCCTCTGATTATTGTG+GGG - chr6_4:10838893-10838912 None:intergenic 45.0%
CGGACTCCTCTGATTATTGT+GGG - chr6_4:10838894-10838913 None:intergenic 45.0%
CCACAATAATCAGAGGAGTC+CGG + chr6_4:10838892-10838911 Msa0976670:CDS 45.0%
TAGCAGAGGGATAAATTCCG+GGG + chr6_4:10838968-10838987 Msa0976670:CDS 45.0%
GGGTTGAGATTAGAGACAGA+TGG + chr6_4:10839193-10839212 Msa0976670:intron 45.0%
AACAGGTTGCTCGAATCAAG+AGG + chr6_4:10839313-10839332 Msa0976670:CDS 45.0%
GAGAGAGAGAAAGGAGAAGG+AGG - chr6_4:10836943-10836962 None:intergenic 50.0%
TAGTGTGCCGAGAGAGAGAA+AGG - chr6_4:10836952-10836971 None:intergenic 50.0%
GGTTTAAGCTCGGCCAACAT+GGG - chr6_4:10837095-10837114 None:intergenic 50.0%
GTGAAAGAGGTGGTTGCTGT+AGG + chr6_4:10837170-10837189 Msa0976670:intron 50.0%
GTGGTTGCTGTAGGTTCCTT+GGG + chr6_4:10837179-10837198 Msa0976670:CDS 50.0%
CTCATAATTCCAGCCACCCA+AGG - chr6_4:10837198-10837217 None:intergenic 50.0%
GTGAAACCCGTAATTGGGAC+AGG + chr6_4:10837816-10837835 Msa0976670:CDS 50.0%
TAGAGCCCTGTCCCAATTAC+GGG - chr6_4:10837825-10837844 None:intergenic 50.0%
GTAGAGCCCTGTCCCAATTA+CGG - chr6_4:10837826-10837845 None:intergenic 50.0%
GGGACAGGGCTCTACTAAAA+CGG + chr6_4:10837831-10837850 Msa0976670:CDS 50.0%
CCCTGTAACTCGGAATCAAG+TGG + chr6_4:10837866-10837885 Msa0976670:intron 50.0%
TACAAAAGGTTCCCGCCAGT+TGG + chr6_4:10838843-10838862 Msa0976670:CDS 50.0%
CCGGACTCCTCTGATTATTG+TGG - chr6_4:10838895-10838914 None:intergenic 50.0%
TAGAGACAGATGGCGATCCT+AGG + chr6_4:10839203-10839222 Msa0976670:intron 50.0%
TAGGCAATCTCAGGGAACCT+AGG - chr6_4:10839223-10839242 None:intergenic 50.0%
CTAGGCTGTAGGCAATCTCA+GGG - chr6_4:10839231-10839250 None:intergenic 50.0%
GATTGCCTACAGCCTAGGAT+AGG + chr6_4:10839234-10839253 Msa0976670:intron 50.0%
TTCCACCTATCCTAGGCTGT+AGG - chr6_4:10839242-10839261 None:intergenic 50.0%
CAGTGAGTTCCACCTATCCT+AGG - chr6_4:10839249-10839268 None:intergenic 50.0%
AGGTTGCTCGAATCAAGAGG+AGG + chr6_4:10839316-10839335 Msa0976670:CDS 50.0%
GAGGTAGATACGCAGTCGAA+GGG + chr6_4:10839335-10839354 Msa0976670:CDS 50.0%
GCCGAGAGAGAGAAAGGAGA+AGG - chr6_4:10836946-10836965 None:intergenic 55.0%
GGGTTTAAGCTCGGCCAACA+TGG - chr6_4:10837096-10837115 None:intergenic 55.0%
GGTGGTTGCTGTAGGTTCCT+TGG + chr6_4:10837178-10837197 Msa0976670:CDS 55.0%
GTTGCTGTAGGTTCCTTGGG+TGG + chr6_4:10837182-10837201 Msa0976670:CDS 55.0%
AAGGTTCCCGCCAGTTGGAA+CGG + chr6_4:10838848-10838867 Msa0976670:CDS 55.0%
ATAGTGCCCGTTCCAACTGG+CGG - chr6_4:10838858-10838877 None:intergenic 55.0%
AACCCAACTGACGGGGATAC+CGG - chr6_4:10838914-10838933 None:intergenic 55.0%
AATTCCGGGGTTACTCCACC+TGG + chr6_4:10838981-10839000 Msa0976670:CDS 55.0%
ATTCCGGGGTTACTCCACCT+GGG + chr6_4:10838982-10839001 Msa0976670:CDS 55.0%
AAACCCAGGTGGAGTAACCC+CGG - chr6_4:10838988-10839007 None:intergenic 55.0%
CCTAGGCTGTAGGCAATCTC+AGG - chr6_4:10839232-10839251 None:intergenic 55.0%
CCTGAGATTGCCTACAGCCT+AGG + chr6_4:10839229-10839248 Msa0976670:intron 55.0%
TGCCTACAGCCTAGGATAGG+TGG + chr6_4:10839237-10839256 Msa0976670:intron 55.0%
GGAGGTAGATACGCAGTCGA+AGG + chr6_4:10839334-10839353 Msa0976670:CDS 55.0%
CTGTAGGTTCCTTGGGTGGC+TGG + chr6_4:10837186-10837205 Msa0976670:CDS 60.0%
GGGTAGATGACTGACCCGGA+AGG + chr6_4:10838696-10838715 Msa0976670:intron 60.0%
AGGTTCCCGCCAGTTGGAAC+GGG + chr6_4:10838849-10838868 Msa0976670:CDS 60.0%
TAGTGCCCGTTCCAACTGGC+GGG - chr6_4:10838857-10838876 None:intergenic 60.0%
CGGATAGTGCCCGTTCCAAC+TGG - chr6_4:10838861-10838880 None:intergenic 60.0%
TGGAACGGGCACTATCCGTG+AGG + chr6_4:10838863-10838882 Msa0976670:CDS 60.0%
AGTCCGGTATCCCCGTCAGT+TGG + chr6_4:10838908-10838927 Msa0976670:CDS 60.0%
GTCCGGTATCCCCGTCAGTT+GGG + chr6_4:10838909-10838928 Msa0976670:CDS 60.0%
ACTGGCGGGAACCCAACTGA+CGG - chr6_4:10838923-10838942 None:intergenic 60.0%
TCAGTTGGGTTCCCGCCAGT+TGG + chr6_4:10838923-10838942 Msa0976670:CDS 60.0%
TGGCGGGAACCCAACTGACG+GGG - chr6_4:10838921-10838940 None:intergenic 65.0%
CTGGCGGGAACCCAACTGAC+GGG - chr6_4:10838922-10838941 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 10836633 10839668 10836633 ID=Msa0976670;Name=Msa0976670
chr6_4 mRNA 10836633 10839668 10836633 ID=Msa0976670-mRNA-1;Parent=Msa0976670;Name=Msa0976670-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0|0|0.16|0.83|1|1|6|277|195
chr6_4 exon 10836633 10836759 10836633 ID=Msa0976670-mRNA-1:exon:3899;Parent=Msa0976670-mRNA-1
chr6_4 exon 10837177 10837247 10837177 ID=Msa0976670-mRNA-1:exon:3900;Parent=Msa0976670-mRNA-1
chr6_4 exon 10837758 10837852 10837758 ID=Msa0976670-mRNA-1:exon:3901;Parent=Msa0976670-mRNA-1
chr6_4 exon 10838049 10838094 10838049 ID=Msa0976670-mRNA-1:exon:3902;Parent=Msa0976670-mRNA-1
chr6_4 exon 10838837 10839003 10838837 ID=Msa0976670-mRNA-1:exon:3903;Parent=Msa0976670-mRNA-1
chr6_4 exon 10839310 10839668 10839310 ID=Msa0976670-mRNA-1:exon:3904;Parent=Msa0976670-mRNA-1
chr6_4 CDS 10836633 10836759 10836633 ID=Msa0976670-mRNA-1:cds;Parent=Msa0976670-mRNA-1
chr6_4 CDS 10837177 10837247 10837177 ID=Msa0976670-mRNA-1:cds;Parent=Msa0976670-mRNA-1
chr6_4 CDS 10837758 10837852 10837758 ID=Msa0976670-mRNA-1:cds;Parent=Msa0976670-mRNA-1
chr6_4 CDS 10838049 10838094 10838049 ID=Msa0976670-mRNA-1:cds;Parent=Msa0976670-mRNA-1
chr6_4 CDS 10838837 10839003 10838837 ID=Msa0976670-mRNA-1:cds;Parent=Msa0976670-mRNA-1
chr6_4 CDS 10839310 10839391 10839310 ID=Msa0976670-mRNA-1:cds;Parent=Msa0976670-mRNA-1
chr6_4 three_prime_UTR 10839392 10839668 10839392 ID=Msa0976670-mRNA-1:three_prime_utr;Parent=Msa0976670-mRNA-1
Gene Sequence

>Msa0976670

ATGGATACTTCTAGTGATGCTGATAGTTTATATGATGAGGATTATAGCTTTGACGATGTTGAAAAGTTCCACACTTCCAGTGATAATTCAAACTTTAGTCTAAGTTGTTTAATATGGTCATTTTCAGAGGTGGTTGCTGTAGGTTCCTTGGGTGGCTGGAATTATGAGACATCAAGAGAATTAAGAGCTAAAGATTGGGTATGGATGTCAAGAACATTTATGGGTAAGGATTCGGAGCCGAATCAGAAGAAGTTTGGTGAAACCCGTAATTGGGACAGGGCTCTACTAAAACGAGCGGAAGCACTAAGTTGTTATGCAGCAGTTTCAGAAGTGATTAAGTTAGGATACAAAAGGTTCCCGCCAGTTGGAACGGGCACTATCCGTGAGGATGACCCCACAATAATCAGAGGAGTCCGGTATCCCCGTCAGTTGGGTTCCCGCCAGTTGGAAATATTTATATATATACCGGTTAGCAGAGGGATAAATTCCGGGGTTACTCCACCTGGATTAACAGGTTGCTCGAATCAAGAGGAGGTAGATACGCAGTCGAAGGGATTACCGTTAAGAGCTCGTTTTCGTACCAGATGA

Protein sequence

>Msa0976670

MDTSSDADSLYDEDYSFDDVEKFHTSSDNSNFSLSCLIWSFSEVVAVGSLGGWNYETSRELRAKDWVWMSRTFMGKDSEPNQKKFGETRNWDRALLKRAEALSCYAAVSEVIKLGYKRFPPVGTGTIREDDPTIIRGVRYPRQLGSRQLEIFIYIPVSRGINSGVTPPGLTGCSNQEEVDTQSKGLPLRARFRTR*