Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106290 | XP_013466911.1 | 96.681 | 452 | 10 | 1 | 1 | 447 | 1 | 452 | 0.0 | 897 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106290 | sp|Q99JW2|ACY1_MOUSE | 44.844 | 417 | 211 | 6 | 19 | 433 | 1 | 400 | 4.82e-121 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106290 | A0A072VH72 | 96.681 | 452 | 10 | 1 | 1 | 447 | 1 | 452 | 0.0 | 897 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063350 | Msa0106290 | 0.826990 | 2.003215e-54 | -8.615850e-47 |
| Msa0106290 | Msa0599800 | 0.822944 | 1.806025e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106290 | MtrunA17_Chr1g0165111 | 96.018 | 452 | 10 | 2 | 1 | 447 | 1 | 449 | 0.0 | 885 |
| Msa0106290 | MtrunA17_Chr1g0165081 | 81.960 | 449 | 75 | 2 | 2 | 447 | 1 | 446 | 0.0 | 765 |
| Msa0106290 | MtrunA17_Chr5g0424041 | 55.611 | 401 | 174 | 2 | 26 | 425 | 29 | 426 | 1.24e-163 | 468 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106290 | AT4G38220.2 | 71.770 | 418 | 110 | 2 | 30 | 447 | 24 | 433 | 0.0 | 630 |
| Msa0106290 | AT4G38220.1 | 71.053 | 418 | 110 | 3 | 30 | 447 | 24 | 430 | 0.0 | 619 |
| Msa0106290 | AT1G44180.3 | 55.374 | 428 | 188 | 1 | 8 | 435 | 9 | 433 | 0.0 | 522 |
| Msa0106290 | AT1G44180.2 | 55.374 | 428 | 188 | 1 | 8 | 435 | 9 | 433 | 0.0 | 522 |
| Msa0106290 | AT1G44180.1 | 55.374 | 428 | 188 | 1 | 8 | 435 | 9 | 433 | 0.0 | 522 |
| Msa0106290 | AT1G44820.1 | 55.792 | 423 | 182 | 2 | 15 | 435 | 12 | 431 | 0.0 | 518 |
Find 162 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTTGTTTCATCATCTA+TGG | 0.165730 | 1_3:-15491306 | Msa0106290:five_prime_UTR |
| CGGATACCAATTCGATAGTT+TGG | 0.218338 | 1_3:+15490887 | None:intergenic |
| GTTTCGTTGGACGAAGATTT+TGG | 0.232688 | 1_3:+15491387 | None:intergenic |
| GGCTGGTGATCAAGGCCGTT+GGG | 0.264666 | 1_3:-15489527 | Msa0106290:CDS |
| TATGTTTGATTGTGTTAAAT+AGG | 0.268643 | 1_3:-15486577 | Msa0106290:three_prime_UTR |
| GTTGCCGCAATATGTCTTTC+AGG | 0.272688 | 1_3:-15488756 | Msa0106290:CDS |
| TCGGAGGAGTGAGTGTAGTT+TGG | 0.278626 | 1_3:+15490949 | None:intergenic |
| CTTCTCCGGATGAGCATTAC+AGG | 0.281836 | 1_3:-15489578 | Msa0106290:CDS |
| CGGAGGAGTGAGTGTAGTTT+GGG | 0.283516 | 1_3:+15490950 | None:intergenic |
| TGACCTTAACAATCTTAAAA+AGG | 0.299791 | 1_3:+15491146 | None:intergenic |
| TTTGGTGATGACTGGTTTCC+CGG | 0.303974 | 1_3:+15488067 | None:intergenic |
| ACAAAATAAACAGTCCTCTT+AGG | 0.312038 | 1_3:+15490631 | None:intergenic |
| ATCAAGGCCGTTGGGGCTCC+TGG | 0.314301 | 1_3:-15489519 | Msa0106290:CDS |
| GGATTGTGATATTAGAAATT+CGG | 0.353288 | 1_3:+15490930 | None:intergenic |
| CGTGTTGGATTGCCTGCTAT+TGG | 0.355347 | 1_3:-15487930 | Msa0106290:CDS |
| TTGATAGTAGAAAAGCTATA+AGG | 0.358503 | 1_3:+15491058 | None:intergenic |
| CTGCAGGTGGTGGTGGTCAC+TGG | 0.359702 | 1_3:+15491110 | None:intergenic |
| GGATACCAATTCGATAGTTT+GGG | 0.365964 | 1_3:+15490888 | None:intergenic |
| GGATTCGAGTGAGAGTGATT+TGG | 0.369425 | 1_3:+15490909 | None:intergenic |
| CTGTCTGTGCTTGATGCGTC+CGG | 0.371317 | 1_3:-15488086 | Msa0106290:CDS |
| GTAGTTTGGGGTTGGATGGT+TGG | 0.373313 | 1_3:+15490963 | None:intergenic |
| CTTGATCAAGGCCGGCTTGA+AGG | 0.382373 | 1_3:-15489406 | Msa0106290:CDS |
| TTGTAGGTATTGTTGGAAAC+GGG | 0.383441 | 1_3:+15490993 | None:intergenic |
| GGGATTGGAACTGTCAGTTT+TGG | 0.383485 | 1_3:+15488049 | None:intergenic |
| CTGTTAGGATTCTTAAAAGT+TGG | 0.386826 | 1_3:-15490663 | Msa0106290:CDS |
| AGCATGATGGAAGGCAGCTC+CGG | 0.388672 | 1_3:+15490826 | None:intergenic |
| CCCGTGGTGGCTGGTGATCA+AGG | 0.408652 | 1_3:-15489535 | Msa0106290:CDS |
| CAAGTTTCCCACCAGCCTCT+TGG | 0.413037 | 1_3:+15488000 | None:intergenic |
| AACCCATCATCATTCTCAAA+TGG | 0.415923 | 1_3:-15490861 | Msa0106290:CDS |
| TGTTAGGATTCTTAAAAGTT+GGG | 0.416087 | 1_3:-15490662 | Msa0106290:CDS |
| CGAATCCCAAACTATCGAAT+TGG | 0.420211 | 1_3:-15490893 | Msa0106290:CDS |
| TTTGCTCCTGATGAGGAGAT+TGG | 0.425043 | 1_3:-15490607 | Msa0106290:CDS |
| CAAGAGGCTGGTGGGAAACT+TGG | 0.430179 | 1_3:-15487999 | Msa0106290:CDS |
| TGGCTGGTGATCAAGGCCGT+TGG | 0.430324 | 1_3:-15489528 | Msa0106290:CDS |
| TGGAGTTCCAGCCTTCAAAA+AGG | 0.433167 | 1_3:+15489353 | None:intergenic |
| TGCAGTATCTTGAAGCTGTT+AGG | 0.436357 | 1_3:-15490678 | Msa0106290:CDS |
| GAGTGAGTGTAGTTTGGGGT+TGG | 0.437234 | 1_3:+15490955 | None:intergenic |
| CAGCCATCTGAAGCAGAAGC+TGG | 0.440378 | 1_3:-15488853 | Msa0106290:CDS |
| CAAACTATCGAATTGGTATC+CGG | 0.447753 | 1_3:-15490886 | Msa0106290:CDS |
| AACTTTGTTTCATCATCTAT+GGG | 0.451673 | 1_3:-15491305 | Msa0106290:five_prime_UTR |
| GCCGTTGGGGCTCCTGGACA+TGG | 0.455669 | 1_3:-15489513 | Msa0106290:CDS |
| TTGTGGTCATGGAGTAGAAT+AGG | 0.455956 | 1_3:+15487885 | None:intergenic |
| TTTGTAGGTATTGTTGGAAA+CGG | 0.458148 | 1_3:+15490992 | None:intergenic |
| TAACAATCCCCACCAGGGAT+TGG | 0.458968 | 1_3:+15488034 | None:intergenic |
| GAGTGTAGTTTGGGGTTGGA+TGG | 0.461362 | 1_3:+15490959 | None:intergenic |
| GGCCCATTTGAGAATGATGA+TGG | 0.464376 | 1_3:+15490858 | None:intergenic |
| TCATCATCTGCAGGTGGTGG+TGG | 0.467361 | 1_3:+15491103 | None:intergenic |
| AGGCAGCTCCGGGCTTGTAC+CGG | 0.471073 | 1_3:+15490837 | None:intergenic |
| ACCCATCATCATTCTCAAAT+GGG | 0.471498 | 1_3:-15490860 | Msa0106290:CDS |
| AGCAGAGTTGTCATAAAGCT+TGG | 0.472153 | 1_3:+15489488 | None:intergenic |
| TGCTATTGGATTCTCACCTA+TGG | 0.472403 | 1_3:-15487916 | Msa0106290:CDS |
| TAAAGCTTGGAGCCATGTCC+AGG | 0.472960 | 1_3:+15489501 | None:intergenic |
| AACGCCCTGTAATGCTCATC+CGG | 0.476649 | 1_3:+15489573 | None:intergenic |
| ACTAACAGGACTGGCTTCTC+CGG | 0.478911 | 1_3:-15489592 | Msa0106290:intron |
| TGACCACCAATCTCCTCATC+AGG | 0.479072 | 1_3:+15490601 | None:intergenic |
| ACAAAGATGAATACTTGAAA+GGG | 0.479424 | 1_3:-15486919 | Msa0106290:CDS |
| TTGCCGCAATATGTCTTTCA+GGG | 0.484195 | 1_3:-15488755 | Msa0106290:intron |
| CAGTTTGACTTGATCAAGGC+CGG | 0.486990 | 1_3:-15489414 | Msa0106290:CDS |
| CTATTCCCGACAACATGATC+TGG | 0.490436 | 1_3:-15491250 | Msa0106290:five_prime_UTR |
| AAATCACCTCATTGTGGTCA+TGG | 0.491849 | 1_3:+15487874 | None:intergenic |
| CTCACAGTTTGACTTGATCA+AGG | 0.494700 | 1_3:-15489418 | Msa0106290:CDS |
| TAATCAAAATCTTATAAACT+AGG | 0.495497 | 1_3:-15486521 | Msa0106290:three_prime_UTR |
| ATCTGATTTGTAAAATAAAG+AGG | 0.495514 | 1_3:-15486704 | Msa0106290:three_prime_UTR |
| GCAACTAGGTGCCCACTCTT+CGG | 0.499636 | 1_3:+15488774 | None:intergenic |
| CACAAAGATGAATACTTGAA+AGG | 0.501698 | 1_3:-15486920 | Msa0106290:CDS |
| TAGGCCAAAGTAAAACCAAC+AGG | 0.503573 | 1_3:+15486674 | None:intergenic |
| ACTTCATCATCTGCAGGTGG+TGG | 0.508415 | 1_3:+15491100 | None:intergenic |
| GAAAATGCTGTCCAAGAGGC+TGG | 0.508612 | 1_3:-15488011 | Msa0106290:CDS |
| ACCCACTTATCGTGTTCAGC+GGG | 0.510675 | 1_3:+15490781 | None:intergenic |
| GATTTATGCAAGAGGGTCAC+AGG | 0.512669 | 1_3:-15490719 | Msa0106290:CDS |
| GTGGGTCCATGATCCTTTCA+AGG | 0.516268 | 1_3:-15490764 | Msa0106290:CDS |
| TCCCCGCTGAACACGATAAG+TGG | 0.518305 | 1_3:-15490783 | Msa0106290:CDS |
| AGATGTAGGCATTAAGAATG+AGG | 0.522398 | 1_3:+15486793 | None:intergenic |
| GCTTTATGACAACTCTGCTA+TGG | 0.522983 | 1_3:-15489484 | Msa0106290:CDS |
| TGGAACCAGATCATGTTGTC+GGG | 0.524212 | 1_3:+15491245 | None:intergenic |
| AGAGAGGAGCCCGTGGTGGC+TGG | 0.525075 | 1_3:-15489544 | Msa0106290:CDS |
| GTTTGACTTACAGTTGGAGA+TGG | 0.526780 | 1_3:+15489333 | None:intergenic |
| TTGGAACCAGATCATGTTGT+CGG | 0.526974 | 1_3:+15491244 | None:intergenic |
| CAAATGGGCCGGTACAAGCC+CGG | 0.529793 | 1_3:-15490845 | Msa0106290:CDS |
| CCTTGATCACCAGCCACCAC+GGG | 0.533837 | 1_3:+15489535 | None:intergenic |
| ACTGTGAGGCGCGAAACCTT+CGG | 0.536388 | 1_3:+15489433 | None:intergenic |
| ATCTCTTACACGTTCATCGA+AGG | 0.538649 | 1_3:+15486859 | None:intergenic |
| AATGATTCTGCATCAGCGGT+TGG | 0.539171 | 1_3:+15488811 | None:intergenic |
| CATGGGCCTTGAAAGGATCA+TGG | 0.539532 | 1_3:+15490758 | None:intergenic |
| TGGTGGGAAACTTGGTAAGC+CGG | 0.540180 | 1_3:-15487991 | Msa0106290:CDS |
| TAAAGAGGAAATAAACCTGT+TGG | 0.540206 | 1_3:-15486689 | Msa0106290:three_prime_UTR |
| AAGGCCCATGTGGATGATGA+AGG | 0.540460 | 1_3:-15490745 | Msa0106290:CDS |
| GCTCCTGATGAGGAGATTGG+TGG | 0.541895 | 1_3:-15490604 | Msa0106290:CDS |
| TGTCTGTGCTTGATGCGTCC+GGG | 0.541941 | 1_3:-15488085 | Msa0106290:CDS |
| GCGTTTAAGAATCACAATTG+AGG | 0.542783 | 1_3:-15491352 | Msa0106290:five_prime_UTR |
| GGCCGGCTTGAAGGCTGAAG+GGG | 0.544594 | 1_3:-15489397 | Msa0106290:CDS |
| TCTGAGACAAAGTCAGATGT+AGG | 0.545158 | 1_3:+15486779 | None:intergenic |
| GTGGAAGCAGGAAAGATCTC+CGG | 0.545776 | 1_3:+15487972 | None:intergenic |
| TAGCGTGCATCTGTGGAAGC+AGG | 0.546751 | 1_3:+15487960 | None:intergenic |
| GCATGATGGAAGGCAGCTCC+GGG | 0.548449 | 1_3:+15490827 | None:intergenic |
| GCACGCTATTTCCGCCGTGT+TGG | 0.549497 | 1_3:-15487945 | Msa0106290:CDS |
| GAAAAGACAGCAGATGAGGT+TGG | 0.553789 | 1_3:+15491225 | None:intergenic |
| GAGGAGATTGGTGGTCATGA+TGG | 0.557016 | 1_3:-15490595 | Msa0106290:CDS |
| ATCATCATTCTCAAATGGGC+CGG | 0.560210 | 1_3:-15490856 | Msa0106290:CDS |
| TCATCCACATGGGCCTTGAA+AGG | 0.560463 | 1_3:+15490751 | None:intergenic |
| CCCATGTGGATGATGAAGGA+AGG | 0.560586 | 1_3:-15490741 | Msa0106290:CDS |
| CTCTAATGATTCTGCATCAG+CGG | 0.561783 | 1_3:+15488807 | None:intergenic |
| GATGTAGGCATTAAGAATGA+GGG | 0.562597 | 1_3:+15486794 | None:intergenic |
| GGATGTTGTTTCTATTAACA+TGG | 0.563003 | 1_3:-15489376 | Msa0106290:CDS |
| TTCGATGAACGTGTAAGAGA+TGG | 0.564600 | 1_3:-15486857 | Msa0106290:CDS |
| GCCATGTCCAGGAGCCCCAA+CGG | 0.565920 | 1_3:+15489512 | None:intergenic |
| GGTTCAACTTCATCATCTGC+AGG | 0.568929 | 1_3:+15491094 | None:intergenic |
| GCCTTGATCACCAGCCACCA+CGG | 0.571593 | 1_3:+15489534 | None:intergenic |
| TCCTTCCTTCATCATCCACA+TGG | 0.571894 | 1_3:+15490740 | None:intergenic |
| AATCCAGCTTCTGCTTCAGA+TGG | 0.575529 | 1_3:+15488850 | None:intergenic |
| AGGCCGGCTTGAAGGCTGAA+GGG | 0.576200 | 1_3:-15489398 | Msa0106290:CDS |
| AAAGACATATTGCGGCAACT+AGG | 0.577793 | 1_3:+15488760 | None:intergenic |
| AGGTGGTGGTGGTCACTGGT+TGG | 0.578131 | 1_3:+15491114 | None:intergenic |
| AAACTGACAGTTCCAATCCC+TGG | 0.578875 | 1_3:-15488046 | Msa0106290:CDS |
| GCGGAAATAGCGTGCATCTG+TGG | 0.578906 | 1_3:+15487953 | None:intergenic |
| ATAGGTGAGAATCCAATAGC+AGG | 0.581430 | 1_3:+15487918 | None:intergenic |
| GCTCTACTCTCACACTGATG+TGG | 0.583803 | 1_3:-15490806 | Msa0106290:CDS |
| GCCCATTTGAGAATGATGAT+GGG | 0.586294 | 1_3:+15490859 | None:intergenic |
| AGAATAGGAGTGTTTGCCAT+AGG | 0.586699 | 1_3:+15487900 | None:intergenic |
| TCACACAAAGCTAAGTTGCT+AGG | 0.591608 | 1_3:+15486655 | None:intergenic |
| CTATAAGGAAGATGCTTCGA+CGG | 0.592431 | 1_3:+15491073 | None:intergenic |
| GCTGGTGATCAAGGCCGTTG+GGG | 0.592758 | 1_3:-15489526 | Msa0106290:CDS |
| AAGGCCGGCTTGAAGGCTGA+AGG | 0.594320 | 1_3:-15489399 | Msa0106290:CDS |
| GACAGTTCCAATCCCTGGTG+GGG | 0.594707 | 1_3:-15488041 | Msa0106290:CDS |
| AGATGAAAAGACAGCAGATG+AGG | 0.595143 | 1_3:+15491221 | None:intergenic |
| ATCCCCTTCAGCCTTCAAGC+CGG | 0.595969 | 1_3:+15489395 | None:intergenic |
| GATTCTGCATCAGCGGTTGG+TGG | 0.596145 | 1_3:+15488814 | None:intergenic |
| TGACAGTTCCAATCCCTGGT+GGG | 0.600989 | 1_3:-15488042 | Msa0106290:CDS |
| AAAGATGAGTTATGAGCAAG+TGG | 0.602293 | 1_3:-15486827 | Msa0106290:exon |
| TTACCCTGAAAGACATATTG+CGG | 0.602668 | 1_3:+15488752 | None:intergenic |
| CACAATCAAACATAAAAGAG+TGG | 0.604111 | 1_3:+15486586 | None:intergenic |
| TGAGAGTAGAGCATGATGGA+AGG | 0.606271 | 1_3:+15490817 | None:intergenic |
| GAGGCGAATTGCCGAAGAGT+GGG | 0.609461 | 1_3:-15488785 | Msa0106290:CDS |
| ATGCTGTCCAAGAGGCTGGT+GGG | 0.609698 | 1_3:-15488007 | Msa0106290:CDS |
| GTTGGTATAGTGCTTGATGA+AGG | 0.613803 | 1_3:-15490529 | Msa0106290:intron |
| AATGCTGTCCAAGAGGCTGG+TGG | 0.620047 | 1_3:-15488008 | Msa0106290:CDS |
| CCCCGCTGAACACGATAAGT+GGG | 0.624192 | 1_3:-15490782 | Msa0106290:CDS |
| AGAGGCGAATTGCCGAAGAG+TGG | 0.624515 | 1_3:-15488786 | Msa0106290:CDS |
| TTGTGATATTAGAAATTCGG+AGG | 0.625011 | 1_3:+15490933 | None:intergenic |
| GGAGGAGTGAGTGTAGTTTG+GGG | 0.625409 | 1_3:+15490951 | None:intergenic |
| AGAGTATTGAAAGCATCCGA+AGG | 0.637964 | 1_3:-15489449 | Msa0106290:CDS |
| GTTAGAAAATGCTGTCCAAG+AGG | 0.638244 | 1_3:-15488015 | Msa0106290:CDS |
| GACCCACTTATCGTGTTCAG+CGG | 0.643595 | 1_3:+15490780 | None:intergenic |
| AGTGTGAGAGTAGAGCATGA+TGG | 0.643646 | 1_3:+15490813 | None:intergenic |
| AAGGAAGGATTTATGCAAGA+GGG | 0.648002 | 1_3:-15490726 | Msa0106290:CDS |
| CAATAGCAGGCAATCCAACA+CGG | 0.650903 | 1_3:+15487931 | None:intergenic |
| ATGCAGAGAGGAGCCCGTGG+TGG | 0.659419 | 1_3:-15489548 | Msa0106290:CDS |
| TTCTCCGGATGAGCATTACA+GGG | 0.659788 | 1_3:-15489577 | Msa0106290:CDS |
| TCAACTTCATCATCTGCAGG+TGG | 0.662294 | 1_3:+15491097 | None:intergenic |
| TCTATGCAGAGAGGAGCCCG+TGG | 0.664265 | 1_3:-15489551 | Msa0106290:CDS |
| CCTTCCTTCATCATCCACAT+GGG | 0.670602 | 1_3:+15490741 | None:intergenic |
| GAAGGAAGGATTTATGCAAG+AGG | 0.673198 | 1_3:-15490727 | Msa0106290:CDS |
| CTGATGCAGAATCATTAGAG+AGG | 0.675563 | 1_3:-15488804 | Msa0106290:CDS |
| TCTACTCCATGACCACAATG+AGG | 0.677316 | 1_3:-15487880 | Msa0106290:intron |
| TGATCCTTTCAAGGCCCATG+TGG | 0.688332 | 1_3:-15490755 | Msa0106290:CDS |
| CTTGATCAAGTCAAACTGTG+AGG | 0.692029 | 1_3:+15489419 | None:intergenic |
| GTAGGCATTAAGAATGAGGG+AGG | 0.693336 | 1_3:+15486797 | None:intergenic |
| CTGACAGTTCCAATCCCTGG+TGG | 0.706841 | 1_3:-15488043 | Msa0106290:CDS |
| CCCACTTATCGTGTTCAGCG+GGG | 0.709300 | 1_3:+15490782 | None:intergenic |
| ACAGGGCGTTCTATGCAGAG+AGG | 0.731851 | 1_3:-15489560 | Msa0106290:CDS |
| TGAGTTATGAGCAAGTGGTG+TGG | 0.735469 | 1_3:-15486822 | Msa0106290:exon |
| TAGCAGGCAATCCAACACGG+CGG | 0.783188 | 1_3:+15487934 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAAAAAAAATT+AGG | + | chr1_3:15489312-15489331 | None:intergenic | 0.0% |
| !!! | TGACATTTTTTAAATTATTA+TGG | - | chr1_3:15489590-15489609 | Msa0106290:intron | 10.0% |
| !!! | ATGAAACAAAGTTTTTAAAT+GGG | + | chr1_3:15486579-15486598 | None:intergenic | 15.0% |
| !! | TTTGTAAGTGAATAAAAAAT+TGG | + | chr1_3:15488280-15488299 | None:intergenic | 15.0% |
| !! | ATGATAAATATAAAGCATAA+TGG | + | chr1_3:15489177-15489196 | None:intergenic | 15.0% |
| !!! | TTTTTAAATTATTATGGAGA+AGG | - | chr1_3:15489596-15489615 | Msa0106290:intron | 15.0% |
| !!! | ATGAAAAAGTATTTATAAGA+GGG | + | chr1_3:15490557-15490576 | None:intergenic | 15.0% |
| !!! | GATTTTGATTAATTTATGTA+TGG | + | chr1_3:15491361-15491380 | None:intergenic | 15.0% |
| !! | TAATCAAAATCTTATAAACT+AGG | - | chr1_3:15491370-15491389 | Msa0106290:five_prime_UTR | 15.0% |
| !!! | GATGAAACAAAGTTTTTAAA+TGG | + | chr1_3:15486580-15486599 | None:intergenic | 20.0% |
| !! | AAAGTAGAAGATAATTCATT+AGG | - | chr1_3:15487537-15487556 | Msa0106290:intron | 20.0% |
| !! | AAATTCTTAGAAAACTGATT+TGG | - | chr1_3:15487698-15487717 | Msa0106290:intron | 20.0% |
| !!! | AATACTCTTTAATTTCTGTT+AGG | - | chr1_3:15487976-15487995 | Msa0106290:CDS | 20.0% |
| !! | ATGTTAAATAAATTTACCCT+TGG | - | chr1_3:15488059-15488078 | Msa0106290:CDS | 20.0% |
| !! | TGTGAAATGTATTATTTCAA+AGG | + | chr1_3:15488912-15488931 | None:intergenic | 20.0% |
| !! | TATTAGAACATTTCATATCA+TGG | - | chr1_3:15489369-15489388 | Msa0106290:CDS | 20.0% |
| !! | GTTTCTTAATACTTAGAATT+TGG | - | chr1_3:15490286-15490305 | Msa0106290:intron | 20.0% |
| !!! | CATGAAAAAGTATTTATAAG+AGG | + | chr1_3:15490558-15490577 | None:intergenic | 20.0% |
| !!! | ATCTGATTTGTAAAATAAAG+AGG | - | chr1_3:15491187-15491206 | Msa0106290:five_prime_UTR | 20.0% |
| !! | TATGTTTGATTGTGTTAAAT+AGG | - | chr1_3:15491314-15491333 | Msa0106290:five_prime_UTR | 20.0% |
| !! | AAAGTTTTTAAATGGGACAT+TGG | + | chr1_3:15486572-15486591 | None:intergenic | 25.0% |
| !! | AAACTTTGTTTCATCATCTA+TGG | - | chr1_3:15486585-15486604 | Msa0106290:three_prime_UTR | 25.0% |
| !! | AACTTTGTTTCATCATCTAT+GGG | - | chr1_3:15486586-15486605 | Msa0106290:three_prime_UTR | 25.0% |
| !!! | ACACCTTTTTAAGATTGTTA+AGG | - | chr1_3:15486742-15486761 | Msa0106290:three_prime_UTR | 25.0% |
| ! | TGACCTTAACAATCTTAAAA+AGG | + | chr1_3:15486748-15486767 | None:intergenic | 25.0% |
| !! | TTGATAGTAGAAAAGCTATA+AGG | + | chr1_3:15486836-15486855 | None:intergenic | 25.0% |
| !!! | TTTTGATTTGTAGGTATTGT+TGG | + | chr1_3:15486908-15486927 | None:intergenic | 25.0% |
| ! | GGATTGTGATATTAGAAATT+CGG | + | chr1_3:15486964-15486983 | None:intergenic | 25.0% |
| ! | TGTTAGGATTCTTAAAAGTT+GGG | - | chr1_3:15487229-15487248 | Msa0106290:intron | 25.0% |
| ! | ATTTATAGTCTGTTAAAGTG+AGG | - | chr1_3:15487403-15487422 | Msa0106290:intron | 25.0% |
| ! | AACTCAAATATCTAAATCTG+TGG | + | chr1_3:15487675-15487694 | None:intergenic | 25.0% |
| !!! | ATAGGTTTTAGGTATTTGAA+AGG | - | chr1_3:15487721-15487740 | Msa0106290:intron | 25.0% |
| ! | AAATAAATTTACCCTTGGTT+TGG | - | chr1_3:15488064-15488083 | Msa0106290:CDS | 25.0% |
| ! | AAAGAACAGCAATTCATATT+TGG | + | chr1_3:15488119-15488138 | None:intergenic | 25.0% |
| ! | TTATTCACTTACAAACTAAC+AGG | - | chr1_3:15488285-15488304 | Msa0106290:intron | 25.0% |
| ! | TTTCGATTATATTCTACTCA+TGG | + | chr1_3:15488802-15488821 | None:intergenic | 25.0% |
| ! | TATTATTTCAAAGGTAAGCA+TGG | + | chr1_3:15488903-15488922 | None:intergenic | 25.0% |
| ! | AGAAAGATAGAATCATTAGT+GGG | + | chr1_3:15488985-15489004 | None:intergenic | 25.0% |
| ! | AAGAAAGATAGAATCATTAG+TGG | + | chr1_3:15488986-15489005 | None:intergenic | 25.0% |
| ! | TATTGTGTATTTACAAGACA+TGG | + | chr1_3:15489200-15489219 | None:intergenic | 25.0% |
| ! | AATGATAGAAATACTTCCTA+TGG | + | chr1_3:15489275-15489294 | None:intergenic | 25.0% |
| !! | TTCATCTTTTCTATGTGAAA+AGG | - | chr1_3:15489413-15489432 | Msa0106290:CDS | 25.0% |
| ! | ATGTGAAAAGGTTAATGTTA+TGG | - | chr1_3:15489425-15489444 | Msa0106290:CDS | 25.0% |
| ! | CATAGAAAACAACTGAAAAA+CGG | - | chr1_3:15489477-15489496 | Msa0106290:CDS | 25.0% |
| ! | ATAGAAAACAACTGAAAAAC+GGG | - | chr1_3:15489478-15489497 | Msa0106290:CDS | 25.0% |
| ! | GTAGTAGATAATGAAAATGA+TGG | - | chr1_3:15489625-15489644 | Msa0106290:intron | 25.0% |
| !!! | GGTAATTTGTTCTCAAAAAA+AGG | + | chr1_3:15489732-15489751 | None:intergenic | 25.0% |
| !!! | TCCTCTAATATATTTTAGCT+CGG | - | chr1_3:15489766-15489785 | Msa0106290:intron | 25.0% |
| ! | ACTATGTCCTAGTTAATATA+AGG | - | chr1_3:15490155-15490174 | Msa0106290:intron | 25.0% |
| !! | ATGAAAGCCTTATATTAACT+AGG | + | chr1_3:15490165-15490184 | None:intergenic | 25.0% |
| !!! | ACCTGAATATTTTTTGTACA+TGG | + | chr1_3:15490231-15490250 | None:intergenic | 25.0% |
| ! | TATTAAGAAACATGTCAACA+TGG | + | chr1_3:15490277-15490296 | None:intergenic | 25.0% |
| ! | ATGAAAATGTGTTCATAAGT+GGG | + | chr1_3:15490351-15490370 | None:intergenic | 25.0% |
| ! | AAAAAAACTTATCTCTGATG+TGG | + | chr1_3:15490674-15490693 | None:intergenic | 25.0% |
| ! | ATACAACCAAAAAGAACATA+AGG | + | chr1_3:15490866-15490885 | None:intergenic | 25.0% |
| ! | ACAAAGATGAATACTTGAAA+GGG | - | chr1_3:15490972-15490991 | Msa0106290:CDS | 25.0% |
| !! | TTCTGTGCATAATTTTGTAA+TGG | - | chr1_3:15491278-15491297 | Msa0106290:five_prime_UTR | 25.0% |
| !!! | GATTCTTAAACGCTTTTTCA+TGG | + | chr1_3:15486532-15486551 | None:intergenic | 30.0% |
| ! | TTTGTAGGTATTGTTGGAAA+CGG | + | chr1_3:15486902-15486921 | None:intergenic | 30.0% |
| TTGTGATATTAGAAATTCGG+AGG | + | chr1_3:15486961-15486980 | None:intergenic | 30.0% | |
| CTGTTAGGATTCTTAAAAGT+TGG | - | chr1_3:15487228-15487247 | Msa0106290:intron | 30.0% | |
| ACAAAATAAACAGTCCTCTT+AGG | + | chr1_3:15487263-15487282 | None:intergenic | 30.0% | |
| ACTAATTGGATTGTCACATA+AGG | + | chr1_3:15487641-15487660 | None:intergenic | 30.0% | |
| !! | CTTAGAAAACTGATTTGGAT+AGG | - | chr1_3:15487703-15487722 | Msa0106290:intron | 30.0% |
| !!! | AACTGATTTGGATAGGTTTT+AGG | - | chr1_3:15487710-15487729 | Msa0106290:intron | 30.0% |
| !!! | ACAAGTGTTTGGTTTTACAT+TGG | - | chr1_3:15487906-15487925 | Msa0106290:CDS | 30.0% |
| AATCACATTTGTCTCAAGAA+AGG | + | chr1_3:15487949-15487968 | None:intergenic | 30.0% | |
| TTTCAGTTATAGTCAAACCA+AGG | + | chr1_3:15488024-15488043 | None:intergenic | 30.0% | |
| ATCACCAAATTAGTGTGTTT+AGG | + | chr1_3:15488201-15488220 | None:intergenic | 30.0% | |
| !! | GGATGTTGTTTCTATTAACA+TGG | - | chr1_3:15488515-15488534 | Msa0106290:intron | 30.0% |
| ! | TATTAACATGGCCTTTTTGA+AGG | - | chr1_3:15488527-15488546 | Msa0106290:intron | 30.0% |
| TGATGAATTTGATGGAGTAT+TGG | + | chr1_3:15488588-15488607 | None:intergenic | 30.0% | |
| GACATGTTTGATGAATTTGA+TGG | + | chr1_3:15488596-15488615 | None:intergenic | 30.0% | |
| ! | ACTTAAATTATAGTTCTGCG+CGG | - | chr1_3:15488630-15488649 | Msa0106290:intron | 30.0% |
| CAATTGCAAATTGAATTCCA+TGG | - | chr1_3:15488680-15488699 | Msa0106290:intron | 30.0% | |
| CAGAACATTGATATGATAAG+AGG | + | chr1_3:15488849-15488868 | None:intergenic | 30.0% | |
| TGTTCTGTTATACATTTGAG+TGG | - | chr1_3:15488862-15488881 | Msa0106290:CDS | 30.0% | |
| GAAAGATAGAATCATTAGTG+GGG | + | chr1_3:15488984-15489003 | None:intergenic | 30.0% | |
| ACACAATAATCTCAGCTAAT+AGG | - | chr1_3:15489212-15489231 | Msa0106290:intron | 30.0% | |
| CTATAGAAATTTGTAGCCAT+AGG | - | chr1_3:15489256-15489275 | Msa0106290:intron | 30.0% | |
| AAAAATTGCAGAGAACATGA+AGG | + | chr1_3:15489395-15489414 | None:intergenic | 30.0% | |
| ! | AATGTTATGGTTGATGCATT+TGG | - | chr1_3:15489438-15489457 | Msa0106290:CDS | 30.0% |
| ! | ATGTTATGGTTGATGCATTT+GGG | - | chr1_3:15489439-15489458 | Msa0106290:CDS | 30.0% |
| TAGAAAACAACTGAAAAACG+GGG | - | chr1_3:15489479-15489498 | Msa0106290:CDS | 30.0% | |
| TAGAGGAAGAATCTAATAAG+AGG | + | chr1_3:15489753-15489772 | None:intergenic | 30.0% | |
| !!! | CCTCTAATATATTTTAGCTC+GGG | - | chr1_3:15489767-15489786 | Msa0106290:intron | 30.0% |
| TTGTAAAAATCACCTCATTG+TGG | + | chr1_3:15490026-15490045 | None:intergenic | 30.0% | |
| TAAGCATACTAGCATCAATT+AGG | + | chr1_3:15490060-15490079 | None:intergenic | 30.0% | |
| GCCATGTACAAAAAATATTC+AGG | - | chr1_3:15490227-15490246 | Msa0106290:intron | 30.0% | |
| TCAACATGGAAACAGAATAA+AGG | + | chr1_3:15490263-15490282 | None:intergenic | 30.0% | |
| CATGAAAATGTGTTCATAAG+TGG | + | chr1_3:15490352-15490371 | None:intergenic | 30.0% | |
| ! | CACTTATGAACACATTTTCA+TGG | - | chr1_3:15490350-15490369 | Msa0106290:intron | 30.0% |
| CAAATATGCAACAATTGGAT+TGG | + | chr1_3:15490618-15490637 | None:intergenic | 30.0% | |
| CAATCCAATTGTTGCATATT+TGG | - | chr1_3:15490616-15490635 | Msa0106290:CDS | 30.0% | |
| ACTCTTGTGTTACATGTTTA+TGG | + | chr1_3:15490715-15490734 | None:intergenic | 30.0% | |
| ! | TATGCACCTTATGTTCTTTT+TGG | - | chr1_3:15490857-15490876 | Msa0106290:CDS | 30.0% |
| AACTAAATGCAAGTACAGTA+AGG | + | chr1_3:15490903-15490922 | None:intergenic | 30.0% | |
| CACAAAGATGAATACTTGAA+AGG | - | chr1_3:15490971-15490990 | Msa0106290:CDS | 30.0% | |
| TAAAGAGGAAATAAACCTGT+TGG | - | chr1_3:15491202-15491221 | Msa0106290:five_prime_UTR | 30.0% | |
| !!! | TAAACCTGTTGGTTTTACTT+TGG | - | chr1_3:15491213-15491232 | Msa0106290:five_prime_UTR | 30.0% |
| CACAATCAAACATAAAAGAG+TGG | + | chr1_3:15491308-15491327 | None:intergenic | 30.0% | |
| !!! | TCTTAAACGCTTTTTCATGG+TGG | + | chr1_3:15486529-15486548 | None:intergenic | 35.0% |
| GCGTTTAAGAATCACAATTG+AGG | - | chr1_3:15486539-15486558 | Msa0106290:three_prime_UTR | 35.0% | |
| ! | TTGTAGGTATTGTTGGAAAC+GGG | + | chr1_3:15486901-15486920 | None:intergenic | 35.0% |
| !!! | GATGGTTGGTTTTGATTTGT+AGG | + | chr1_3:15486917-15486936 | None:intergenic | 35.0% |
| GGATACCAATTCGATAGTTT+GGG | + | chr1_3:15487006-15487025 | None:intergenic | 35.0% | |
| CAAACTATCGAATTGGTATC+CGG | - | chr1_3:15487005-15487024 | Msa0106290:intron | 35.0% | |
| AACCCATCATCATTCTCAAA+TGG | - | chr1_3:15487030-15487049 | Msa0106290:intron | 35.0% | |
| ACCCATCATCATTCTCAAAT+GGG | - | chr1_3:15487031-15487050 | Msa0106290:intron | 35.0% | |
| AAGGAAGGATTTATGCAAGA+GGG | - | chr1_3:15487165-15487184 | Msa0106290:intron | 35.0% | |
| !!! | TTTTGTTTTTGCTCCTGATG+AGG | - | chr1_3:15487277-15487296 | Msa0106290:intron | 35.0% |
| ! | TGAAAAGTTTTCGCTTTCGA+AGG | - | chr1_3:15487322-15487341 | Msa0106290:intron | 35.0% |
| !! | GATTTTCAGGACTTGAATGT+TGG | - | chr1_3:15487344-15487363 | Msa0106290:intron | 35.0% |
| CTGTTAGGCAAACTTGATTT+CGG | - | chr1_3:15487991-15488010 | Msa0106290:CDS | 35.0% | |
| GTTATAGTCAAACCAAGGTT+TGG | + | chr1_3:15488019-15488038 | None:intergenic | 35.0% | |
| CTCACCTAAACACACTAATT+TGG | - | chr1_3:15488194-15488213 | Msa0106290:intron | 35.0% | |
| GGTGATGATATACCTAACTT+TGG | - | chr1_3:15488215-15488234 | Msa0106290:intron | 35.0% | |
| CAAGTCAATGTTCCAAAGTT+AGG | + | chr1_3:15488230-15488249 | None:intergenic | 35.0% | |
| TTACCACTCTACAAATGTTG+CGG | - | chr1_3:15488716-15488735 | Msa0106290:intron | 35.0% | |
| AAAGGTAAGCATGGCATTAT+TGG | + | chr1_3:15488894-15488913 | None:intergenic | 35.0% | |
| TTACCCTGAAAGACATATTG+CGG | + | chr1_3:15489142-15489161 | None:intergenic | 35.0% | |
| AGTTGCACAATTACAGTCAT+CGG | + | chr1_3:15489560-15489579 | None:intergenic | 35.0% | |
| ATTATTATGGAGAAGGCAAG+AGG | - | chr1_3:15489603-15489622 | Msa0106290:intron | 35.0% | |
| !! | TTTTGAGAGAAAGCGATTGT+AGG | + | chr1_3:15489674-15489693 | None:intergenic | 35.0% |
| CCCGAGCTAAAATATATTAG+AGG | + | chr1_3:15489770-15489789 | None:intergenic | 35.0% | |
| TAAGTCATGTCATTGTCTGT+AGG | - | chr1_3:15490086-15490105 | Msa0106290:intron | 35.0% | |
| AAGTCATGTCATTGTCTGTA+GGG | - | chr1_3:15490087-15490106 | Msa0106290:intron | 35.0% | |
| TATCATAGTCTATCCCTGTT+AGG | + | chr1_3:15490467-15490486 | None:intergenic | 35.0% | |
| GAGTTAAGTCTAACTCTACT+CGG | - | chr1_3:15490501-15490520 | Msa0106290:intron | 35.0% | |
| ACATTCATTACCATACAAGC+CGG | + | chr1_3:15490532-15490551 | None:intergenic | 35.0% | |
| CAAGCCAAATATGCAACAAT+TGG | + | chr1_3:15490623-15490642 | None:intergenic | 35.0% | |
| TATCTCTGATGTGGCAAATA+AGG | + | chr1_3:15490665-15490684 | None:intergenic | 35.0% | |
| !! | GCATTTTTCAGAACACAAAG+TGG | + | chr1_3:15490758-15490777 | None:intergenic | 35.0% |
| ! | TGCAGTAGATTTGTTTGAGT+TGG | - | chr1_3:15490775-15490794 | Msa0106290:CDS | 35.0% |
| ! | GCAGTAGATTTGTTTGAGTT+GGG | - | chr1_3:15490776-15490795 | Msa0106290:CDS | 35.0% |
| TTTGTGTAACCACAATGTTC+TGG | + | chr1_3:15490827-15490846 | None:intergenic | 35.0% | |
| ACAGTAAGGTGAAAGACATT+AGG | + | chr1_3:15490889-15490908 | None:intergenic | 35.0% | |
| AAAGATGAGTTATGAGCAAG+TGG | - | chr1_3:15491064-15491083 | Msa0106290:CDS | 35.0% | |
| GATGTAGGCATTAAGAATGA+GGG | + | chr1_3:15491100-15491119 | None:intergenic | 35.0% | |
| AGATGTAGGCATTAAGAATG+AGG | + | chr1_3:15491101-15491120 | None:intergenic | 35.0% | |
| ! | GTTTCGTTGGACGAAGATTT+TGG | + | chr1_3:15486507-15486526 | None:intergenic | 40.0% |
| !! | CTTTTTCATGGTGGTTTCGT+TGG | + | chr1_3:15486520-15486539 | None:intergenic | 40.0% |
| TTGGAACCAGATCATGTTGT+CGG | + | chr1_3:15486650-15486669 | None:intergenic | 40.0% | |
| AGATGAAAAGACAGCAGATG+AGG | + | chr1_3:15486673-15486692 | None:intergenic | 40.0% | |
| CTATAAGGAAGATGCTTCGA+CGG | + | chr1_3:15486821-15486840 | None:intergenic | 40.0% | |
| CGAATCCCAAACTATCGAAT+TGG | - | chr1_3:15486998-15487017 | Msa0106290:intron | 40.0% | |
| CGGATACCAATTCGATAGTT+TGG | + | chr1_3:15487007-15487026 | None:intergenic | 40.0% | |
| !!! | GAGAATGATGATGGGTTTTC+CGG | + | chr1_3:15487027-15487046 | None:intergenic | 40.0% |
| GCCCATTTGAGAATGATGAT+GGG | + | chr1_3:15487035-15487054 | None:intergenic | 40.0% | |
| ATCATCATTCTCAAATGGGC+CGG | - | chr1_3:15487035-15487054 | Msa0106290:intron | 40.0% | |
| GAAGGAAGGATTTATGCAAG+AGG | - | chr1_3:15487164-15487183 | Msa0106290:intron | 40.0% | |
| TGCAGTATCTTGAAGCTGTT+AGG | - | chr1_3:15487213-15487232 | Msa0106290:intron | 40.0% | |
| ! | TTCGCTTTCGAAGGATTTTC+AGG | - | chr1_3:15487331-15487350 | Msa0106290:intron | 40.0% |
| GTTGGTATAGTGCTTGATGA+AGG | - | chr1_3:15487362-15487381 | Msa0106290:intron | 40.0% | |
| AGTACAACTCAGACTCGAAA+AGG | + | chr1_3:15487459-15487478 | None:intergenic | 40.0% | |
| TGGCAACACACAGAACTAAT+TGG | + | chr1_3:15487655-15487674 | None:intergenic | 40.0% | |
| TGCAAGACTAACAGTGTGTT+TGG | - | chr1_3:15487766-15487785 | Msa0106290:intron | 40.0% | |
| CCAATTGTGTGCTAAACACA+TGG | + | chr1_3:15487813-15487832 | None:intergenic | 40.0% | |
| CCATGTGTTTAGCACACAAT+TGG | - | chr1_3:15487810-15487829 | Msa0106290:intron | 40.0% | |
| GCTAATCAAAAGCTACGCTT+TGG | + | chr1_3:15487844-15487863 | None:intergenic | 40.0% | |
| AAACACTTGTAGCACGCATT+TGG | + | chr1_3:15487896-15487915 | None:intergenic | 40.0% | |
| AAATGCGTGCTACAAGTGTT+TGG | - | chr1_3:15487895-15487914 | Msa0106290:CDS | 40.0% | |
| TTGATTTCGGTTCCAAACCT+TGG | - | chr1_3:15488004-15488023 | Msa0106290:CDS | 40.0% | |
| CAAGTTAGATGCCAAACCAA+GGG | + | chr1_3:15488078-15488097 | None:intergenic | 40.0% | |
| CACTTACAAACTAACAGGAC+TGG | - | chr1_3:15488290-15488309 | Msa0106290:intron | 40.0% | |
| AGCAGAGTTGTCATAAAGCT+TGG | + | chr1_3:15488406-15488425 | None:intergenic | 40.0% | |
| GCTTTATGACAACTCTGCTA+TGG | - | chr1_3:15488407-15488426 | Msa0106290:intron | 40.0% | |
| !! | AGAGTATTGAAAGCATCCGA+AGG | - | chr1_3:15488442-15488461 | Msa0106290:intron | 40.0% |
| CTTGATCAAGTCAAACTGTG+AGG | + | chr1_3:15488475-15488494 | None:intergenic | 40.0% | |
| !! | CTCACAGTTTGACTTGATCA+AGG | - | chr1_3:15488473-15488492 | Msa0106290:intron | 40.0% |
| ! | GTTTGACTTACAGTTGGAGA+TGG | + | chr1_3:15488561-15488580 | None:intergenic | 40.0% |
| ! | GGAATCGTTTGACTTACAGT+TGG | + | chr1_3:15488567-15488586 | None:intergenic | 40.0% |
| ! | GAATTCCATGGCTTGCATTT+AGG | - | chr1_3:15488692-15488711 | Msa0106290:intron | 40.0% |
| GTAAACCTAAATGCAAGCCA+TGG | + | chr1_3:15488700-15488719 | None:intergenic | 40.0% | |
| GCAAATTCATGACAAAACCC+TGG | + | chr1_3:15489019-15489038 | None:intergenic | 40.0% | |
| CTCTAATGATTCTGCATCAG+CGG | + | chr1_3:15489087-15489106 | None:intergenic | 40.0% | |
| CTGATGCAGAATCATTAGAG+AGG | - | chr1_3:15489087-15489106 | Msa0106290:intron | 40.0% | |
| AAAGACATATTGCGGCAACT+AGG | + | chr1_3:15489134-15489153 | None:intergenic | 40.0% | |
| TTGCCGCAATATGTCTTTCA+GGG | - | chr1_3:15489136-15489155 | Msa0106290:intron | 40.0% | |
| ! | TTTTCTAACAATCCCCACCA+GGG | + | chr1_3:15489865-15489884 | None:intergenic | 40.0% |
| ! | ATTTTCTAACAATCCCCACC+AGG | + | chr1_3:15489866-15489885 | None:intergenic | 40.0% |
| GTTAGAAAATGCTGTCCAAG+AGG | - | chr1_3:15489876-15489895 | Msa0106290:intron | 40.0% | |
| ATAGGTGAGAATCCAATAGC+AGG | + | chr1_3:15489976-15489995 | None:intergenic | 40.0% | |
| TGCTATTGGATTCTCACCTA+TGG | - | chr1_3:15489975-15489994 | Msa0106290:intron | 40.0% | |
| !! | AGAATAGGAGTGTTTGCCAT+AGG | + | chr1_3:15489994-15490013 | None:intergenic | 40.0% |
| TTGTGGTCATGGAGTAGAAT+AGG | + | chr1_3:15490009-15490028 | None:intergenic | 40.0% | |
| AAATCACCTCATTGTGGTCA+TGG | + | chr1_3:15490020-15490039 | None:intergenic | 40.0% | |
| ! | GTACATGGCTACACTGTTTT+AGG | + | chr1_3:15490216-15490235 | None:intergenic | 40.0% |
| CCTTACAAACCAGTTTCGTA+GGG | + | chr1_3:15490316-15490335 | None:intergenic | 40.0% | |
| ACCTTACAAACCAGTTTCGT+AGG | + | chr1_3:15490317-15490336 | None:intergenic | 40.0% | |
| TGTTCAATCCTAGTCGTGAA+GGG | + | chr1_3:15490417-15490436 | None:intergenic | 40.0% | |
| ATGTTCAATCCTAGTCGTGA+AGG | + | chr1_3:15490418-15490437 | None:intergenic | 40.0% | |
| AGGATTGAACATATTGAGCG+TGG | - | chr1_3:15490426-15490445 | Msa0106290:intron | 40.0% | |
| TATCAACAGATGGCCTAACA+GGG | - | chr1_3:15490451-15490470 | Msa0106290:intron | 40.0% | |
| ! | ATGTTCTGGCACAACCTTTT+CGG | + | chr1_3:15490813-15490832 | None:intergenic | 40.0% |
| ATCTCTTACACGTTCATCGA+AGG | + | chr1_3:15491035-15491054 | None:intergenic | 40.0% | |
| TTCGATGAACGTGTAAGAGA+TGG | - | chr1_3:15491034-15491053 | Msa0106290:CDS | 40.0% | |
| ! | TCTGAGACAAAGTCAGATGT+AGG | + | chr1_3:15491115-15491134 | None:intergenic | 40.0% |
| TAGGCCAAAGTAAAACCAAC+AGG | + | chr1_3:15491220-15491239 | None:intergenic | 40.0% | |
| TCACACAAAGCTAAGTTGCT+AGG | + | chr1_3:15491239-15491258 | None:intergenic | 40.0% | |
| CTATTCCCGACAACATGATC+TGG | - | chr1_3:15486641-15486660 | Msa0106290:three_prime_UTR | 45.0% | |
| TGGAACCAGATCATGTTGTC+GGG | + | chr1_3:15486649-15486668 | None:intergenic | 45.0% | |
| GAAAAGACAGCAGATGAGGT+TGG | + | chr1_3:15486669-15486688 | None:intergenic | 45.0% | |
| TCAACTTCATCATCTGCAGG+TGG | + | chr1_3:15486797-15486816 | None:intergenic | 45.0% | |
| GGTTCAACTTCATCATCTGC+AGG | + | chr1_3:15486800-15486819 | None:intergenic | 45.0% | |
| GGATTCGAGTGAGAGTGATT+TGG | + | chr1_3:15486985-15487004 | None:intergenic | 45.0% | |
| GGCCCATTTGAGAATGATGA+TGG | + | chr1_3:15487036-15487055 | None:intergenic | 45.0% | |
| ! | TGAGAGTAGAGCATGATGGA+AGG | + | chr1_3:15487077-15487096 | None:intergenic | 45.0% |
| AGTGTGAGAGTAGAGCATGA+TGG | + | chr1_3:15487081-15487100 | None:intergenic | 45.0% | |
| CCTTCCTTCATCATCCACAT+GGG | + | chr1_3:15487153-15487172 | None:intergenic | 45.0% | |
| TCCTTCCTTCATCATCCACA+TGG | + | chr1_3:15487154-15487173 | None:intergenic | 45.0% | |
| GATTTATGCAAGAGGGTCAC+AGG | - | chr1_3:15487172-15487191 | Msa0106290:intron | 45.0% | |
| ! | GTTGGGATTTTCAGCCTAAG+AGG | - | chr1_3:15487246-15487265 | Msa0106290:intron | 45.0% |
| TTTGCTCCTGATGAGGAGAT+TGG | - | chr1_3:15487284-15487303 | Msa0106290:intron | 45.0% | |
| GCAAGTTCAAATCCACGTCT+TGG | - | chr1_3:15487430-15487449 | Msa0106290:intron | 45.0% | |
| GCTAAACACATGGTAGCACA+CGG | + | chr1_3:15487803-15487822 | None:intergenic | 45.0% | |
| ! | TGATTAGCTGCATAGTGCTG+CGG | - | chr1_3:15487856-15487875 | Msa0106290:intron | 45.0% |
| GCAAGTTAGATGCCAAACCA+AGG | + | chr1_3:15488079-15488098 | None:intergenic | 45.0% | |
| TTCTCCGGATGAGCATTACA+GGG | - | chr1_3:15488314-15488333 | Msa0106290:intron | 45.0% | |
| !! | CAGTTTGACTTGATCAAGGC+CGG | - | chr1_3:15488477-15488496 | Msa0106290:intron | 45.0% |
| !! | AACATGGCCTTTTTGAAGGC+TGG | - | chr1_3:15488531-15488550 | Msa0106290:intron | 45.0% |
| TGGAGTTCCAGCCTTCAAAA+AGG | + | chr1_3:15488541-15488560 | None:intergenic | 45.0% | |
| GCTGTCTGCAATCATGATTG+CGG | + | chr1_3:15488742-15488761 | None:intergenic | 45.0% | |
| !! | TCTTTCTTTTGCTGTGCACC+AGG | - | chr1_3:15488998-15489017 | Msa0106290:intron | 45.0% |
| !! | CTTTCTTTTGCTGTGCACCA+GGG | - | chr1_3:15488999-15489018 | Msa0106290:intron | 45.0% |
| AATCCAGCTTCTGCTTCAGA+TGG | + | chr1_3:15489044-15489063 | None:intergenic | 45.0% | |
| AATGATTCTGCATCAGCGGT+TGG | + | chr1_3:15489083-15489102 | None:intergenic | 45.0% | |
| GTTGCCGCAATATGTCTTTC+AGG | - | chr1_3:15489135-15489154 | Msa0106290:intron | 45.0% | |
| !! | TTTGGTGATGACTGGTTTCC+CGG | + | chr1_3:15489827-15489846 | None:intergenic | 45.0% |
| !!! | CTGTCAGTTTTGGTGATGAC+TGG | + | chr1_3:15489835-15489854 | None:intergenic | 45.0% |
| ! | GGGATTGGAACTGTCAGTTT+TGG | + | chr1_3:15489845-15489864 | None:intergenic | 45.0% |
| AAACTGACAGTTCCAATCCC+TGG | - | chr1_3:15489845-15489864 | Msa0106290:intron | 45.0% | |
| CAATAGCAGGCAATCCAACA+CGG | + | chr1_3:15489963-15489982 | None:intergenic | 45.0% | |
| TCTACTCCATGACCACAATG+AGG | - | chr1_3:15490011-15490030 | Msa0106290:intron | 45.0% | |
| ACAAACCAGTTTCGTAGGGT+TGG | + | chr1_3:15490312-15490331 | None:intergenic | 45.0% | |
| !! | CCCTACGAAACTGGTTTGTA+AGG | - | chr1_3:15490313-15490332 | Msa0106290:intron | 45.0% |
| AATACACACCCTTCACGACT+AGG | - | chr1_3:15490406-15490425 | Msa0106290:intron | 45.0% | |
| CTGTTAGGCCATCTGTTGAT+AGG | + | chr1_3:15490452-15490471 | None:intergenic | 45.0% | |
| CTATCAACAGATGGCCTAAC+AGG | - | chr1_3:15490450-15490469 | Msa0106290:intron | 45.0% | |
| CTAACTCTACTCGGCAAAAC+CGG | - | chr1_3:15490510-15490529 | Msa0106290:intron | 45.0% | |
| GGGTTGTATCCTAACCGAAA+AGG | - | chr1_3:15490796-15490815 | Msa0106290:CDS | 45.0% | |
| AAGGTTGTGCCAGAACATTG+TGG | - | chr1_3:15490815-15490834 | Msa0106290:CDS | 45.0% | |
| TGAGTTATGAGCAAGTGGTG+TGG | - | chr1_3:15491069-15491088 | Msa0106290:CDS | 45.0% | |
| GTAGGCATTAAGAATGAGGG+AGG | + | chr1_3:15491097-15491116 | None:intergenic | 45.0% | |
| ACTTCATCATCTGCAGGTGG+TGG | + | chr1_3:15486794-15486813 | None:intergenic | 50.0% | |
| ! | GTAGTTTGGGGTTGGATGGT+TGG | + | chr1_3:15486931-15486950 | None:intergenic | 50.0% |
| ! | GAGTGTAGTTTGGGGTTGGA+TGG | + | chr1_3:15486935-15486954 | None:intergenic | 50.0% |
| ! | GAGTGAGTGTAGTTTGGGGT+TGG | + | chr1_3:15486939-15486958 | None:intergenic | 50.0% |
| GGAGGAGTGAGTGTAGTTTG+GGG | + | chr1_3:15486943-15486962 | None:intergenic | 50.0% | |
| CGGAGGAGTGAGTGTAGTTT+GGG | + | chr1_3:15486944-15486963 | None:intergenic | 50.0% | |
| TCGGAGGAGTGAGTGTAGTT+TGG | + | chr1_3:15486945-15486964 | None:intergenic | 50.0% | |
| GCTCTACTCTCACACTGATG+TGG | - | chr1_3:15487085-15487104 | Msa0106290:intron | 50.0% | |
| ACCCACTTATCGTGTTCAGC+GGG | + | chr1_3:15487113-15487132 | None:intergenic | 50.0% | |
| GACCCACTTATCGTGTTCAG+CGG | + | chr1_3:15487114-15487133 | None:intergenic | 50.0% | |
| GTGGGTCCATGATCCTTTCA+AGG | - | chr1_3:15487127-15487146 | Msa0106290:intron | 50.0% | |
| CATGGGCCTTGAAAGGATCA+TGG | + | chr1_3:15487136-15487155 | None:intergenic | 50.0% | |
| TGATCCTTTCAAGGCCCATG+TGG | - | chr1_3:15487136-15487155 | Msa0106290:intron | 50.0% | |
| TCATCCACATGGGCCTTGAA+AGG | + | chr1_3:15487143-15487162 | None:intergenic | 50.0% | |
| AAGGCCCATGTGGATGATGA+AGG | - | chr1_3:15487146-15487165 | Msa0106290:intron | 50.0% | |
| CCCATGTGGATGATGAAGGA+AGG | - | chr1_3:15487150-15487169 | Msa0106290:intron | 50.0% | |
| TGACCACCAATCTCCTCATC+AGG | + | chr1_3:15487293-15487312 | None:intergenic | 50.0% | |
| ! | GAGGAGATTGGTGGTCATGA+TGG | - | chr1_3:15487296-15487315 | Msa0106290:intron | 50.0% |
| TCGAAAAGGCTACCAAGACG+TGG | + | chr1_3:15487445-15487464 | None:intergenic | 50.0% | |
| !! | ACTAACAGGACTGGCTTCTC+CGG | - | chr1_3:15488299-15488318 | Msa0106290:intron | 50.0% |
| CTTCTCCGGATGAGCATTAC+AGG | - | chr1_3:15488313-15488332 | Msa0106290:intron | 50.0% | |
| AACGCCCTGTAATGCTCATC+CGG | + | chr1_3:15488321-15488340 | None:intergenic | 50.0% | |
| TAAAGCTTGGAGCCATGTCC+AGG | + | chr1_3:15488393-15488412 | None:intergenic | 50.0% | |
| TGACAGTTCCAATCCCTGGT+GGG | - | chr1_3:15489849-15489868 | Msa0106290:intron | 50.0% | |
| TAACAATCCCCACCAGGGAT+TGG | + | chr1_3:15489860-15489879 | None:intergenic | 50.0% | |
| GAAAATGCTGTCCAAGAGGC+TGG | - | chr1_3:15489880-15489899 | Msa0106290:intron | 50.0% | |
| TGGTGGGAAACTTGGTAAGC+CGG | - | chr1_3:15489900-15489919 | Msa0106290:intron | 50.0% | |
| GTGGAAGCAGGAAAGATCTC+CGG | + | chr1_3:15489922-15489941 | None:intergenic | 50.0% | |
| CGTGTTGGATTGCCTGCTAT+TGG | - | chr1_3:15489961-15489980 | Msa0106290:intron | 50.0% | |
| TTTGGCCAACCCTACGAAAC+TGG | - | chr1_3:15490304-15490323 | Msa0106290:intron | 50.0% | |
| ! | CTGGCACAACCTTTTCGGTT+AGG | + | chr1_3:15490808-15490827 | None:intergenic | 50.0% |
| ! | TCATCATCTGCAGGTGGTGG+TGG | + | chr1_3:15486791-15486810 | None:intergenic | 55.0% |
| ! | AGCATGATGGAAGGCAGCTC+CGG | + | chr1_3:15487068-15487087 | None:intergenic | 55.0% |
| TCCCCGCTGAACACGATAAG+TGG | - | chr1_3:15487108-15487127 | Msa0106290:intron | 55.0% | |
| CCCACTTATCGTGTTCAGCG+GGG | + | chr1_3:15487112-15487131 | None:intergenic | 55.0% | |
| CCCCGCTGAACACGATAAGT+GGG | - | chr1_3:15487109-15487128 | Msa0106290:intron | 55.0% | |
| GCTCCTGATGAGGAGATTGG+TGG | - | chr1_3:15487287-15487306 | Msa0106290:intron | 55.0% | |
| ! | ACAGGGCGTTCTATGCAGAG+AGG | - | chr1_3:15488331-15488350 | Msa0106290:intron | 55.0% |
| ACTGTGAGGCGCGAAACCTT+CGG | + | chr1_3:15488461-15488480 | None:intergenic | 55.0% | |
| !! | CTTGATCAAGGCCGGCTTGA+AGG | - | chr1_3:15488485-15488504 | Msa0106290:intron | 55.0% |
| ATCCCCTTCAGCCTTCAAGC+CGG | + | chr1_3:15488499-15488518 | None:intergenic | 55.0% | |
| CGGCCGCAACATTTGTAGAG+TGG | + | chr1_3:15488722-15488741 | None:intergenic | 55.0% | |
| ! | CAGCCATCTGAAGCAGAAGC+TGG | - | chr1_3:15489038-15489057 | Msa0106290:intron | 55.0% |
| GATTCTGCATCAGCGGTTGG+TGG | + | chr1_3:15489080-15489099 | None:intergenic | 55.0% | |
| AGAGGCGAATTGCCGAAGAG+TGG | - | chr1_3:15489105-15489124 | Msa0106290:intron | 55.0% | |
| GAGGCGAATTGCCGAAGAGT+GGG | - | chr1_3:15489106-15489125 | Msa0106290:intron | 55.0% | |
| GCAACTAGGTGCCCACTCTT+CGG | + | chr1_3:15489120-15489139 | None:intergenic | 55.0% | |
| CTGTCTGTGCTTGATGCGTC+CGG | - | chr1_3:15489805-15489824 | Msa0106290:intron | 55.0% | |
| TGTCTGTGCTTGATGCGTCC+GGG | - | chr1_3:15489806-15489825 | Msa0106290:intron | 55.0% | |
| CTGACAGTTCCAATCCCTGG+TGG | - | chr1_3:15489848-15489867 | Msa0106290:intron | 55.0% | |
| GACAGTTCCAATCCCTGGTG+GGG | - | chr1_3:15489850-15489869 | Msa0106290:intron | 55.0% | |
| AATGCTGTCCAAGAGGCTGG+TGG | - | chr1_3:15489883-15489902 | Msa0106290:intron | 55.0% | |
| ATGCTGTCCAAGAGGCTGGT+GGG | - | chr1_3:15489884-15489903 | Msa0106290:intron | 55.0% | |
| CAAGTTTCCCACCAGCCTCT+TGG | + | chr1_3:15489894-15489913 | None:intergenic | 55.0% | |
| CAAGAGGCTGGTGGGAAACT+TGG | - | chr1_3:15489892-15489911 | Msa0106290:intron | 55.0% | |
| TAGCGTGCATCTGTGGAAGC+AGG | + | chr1_3:15489934-15489953 | None:intergenic | 55.0% | |
| GCGGAAATAGCGTGCATCTG+TGG | + | chr1_3:15489941-15489960 | None:intergenic | 55.0% | |
| TAGCAGGCAATCCAACACGG+CGG | + | chr1_3:15489960-15489979 | None:intergenic | 55.0% | |
| GAGCGTGGCCTATCAACAGA+TGG | - | chr1_3:15490441-15490460 | Msa0106290:intron | 55.0% | |
| !! | CTCGGCAAAACCGGCTTGTA+TGG | - | chr1_3:15490519-15490538 | Msa0106290:intron | 55.0% |
| !! | AGGTGGTGGTGGTCACTGGT+TGG | + | chr1_3:15486780-15486799 | None:intergenic | 60.0% |
| CAAATGGGCCGGTACAAGCC+CGG | - | chr1_3:15487046-15487065 | Msa0106290:intron | 60.0% | |
| ! | GCATGATGGAAGGCAGCTCC+GGG | + | chr1_3:15487067-15487086 | None:intergenic | 60.0% |
| TCTATGCAGAGAGGAGCCCG+TGG | - | chr1_3:15488340-15488359 | Msa0106290:intron | 60.0% | |
| CCTTGATCACCAGCCACCAC+GGG | + | chr1_3:15488359-15488378 | None:intergenic | 60.0% | |
| GCCTTGATCACCAGCCACCA+CGG | + | chr1_3:15488360-15488379 | None:intergenic | 60.0% | |
| TGGCTGGTGATCAAGGCCGT+TGG | - | chr1_3:15488363-15488382 | Msa0106290:intron | 60.0% | |
| GGCTGGTGATCAAGGCCGTT+GGG | - | chr1_3:15488364-15488383 | Msa0106290:intron | 60.0% | |
| GCTGGTGATCAAGGCCGTTG+GGG | - | chr1_3:15488365-15488384 | Msa0106290:intron | 60.0% | |
| !! | AAGGCCGGCTTGAAGGCTGA+AGG | - | chr1_3:15488492-15488511 | Msa0106290:intron | 60.0% |
| !! | AGGCCGGCTTGAAGGCTGAA+GGG | - | chr1_3:15488493-15488512 | Msa0106290:intron | 60.0% |
| ! | GCACGCTATTTCCGCCGTGT+TGG | - | chr1_3:15489946-15489965 | Msa0106290:intron | 60.0% |
| !! | CTGCAGGTGGTGGTGGTCAC+TGG | + | chr1_3:15486784-15486803 | None:intergenic | 65.0% |
| AGGCAGCTCCGGGCTTGTAC+CGG | + | chr1_3:15487057-15487076 | None:intergenic | 65.0% | |
| ATGCAGAGAGGAGCCCGTGG+TGG | - | chr1_3:15488343-15488362 | Msa0106290:intron | 65.0% | |
| CCCGTGGTGGCTGGTGATCA+AGG | - | chr1_3:15488356-15488375 | Msa0106290:intron | 65.0% | |
| ATCAAGGCCGTTGGGGCTCC+TGG | - | chr1_3:15488372-15488391 | Msa0106290:intron | 65.0% | |
| GCCATGTCCAGGAGCCCCAA+CGG | + | chr1_3:15488382-15488401 | None:intergenic | 65.0% | |
| !! | GGCCGGCTTGAAGGCTGAAG+GGG | - | chr1_3:15488494-15488513 | Msa0106290:intron | 65.0% |
| AGAGAGGAGCCCGTGGTGGC+TGG | - | chr1_3:15488347-15488366 | Msa0106290:intron | 70.0% | |
| GCCGTTGGGGCTCCTGGACA+TGG | - | chr1_3:15488378-15488397 | Msa0106290:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 15486500 | 15491413 | 15486500 | ID=Msa0106290;Name=Msa0106290 |
| chr1_3 | mRNA | 15486500 | 15491413 | 15486500 | ID=Msa0106290-mRNA-1;Parent=Msa0106290;Name=Msa0106290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=304|0.75|0.8|1|1|1|5|335|447 |
| chr1_3 | exon | 15486500 | 15486948 | 15486500 | ID=Msa0106290-mRNA-1:exon:5958;Parent=Msa0106290-mRNA-1 |
| chr1_3 | exon | 15487881 | 15488129 | 15487881 | ID=Msa0106290-mRNA-1:exon:5957;Parent=Msa0106290-mRNA-1 |
| chr1_3 | exon | 15488756 | 15488893 | 15488756 | ID=Msa0106290-mRNA-1:exon:5956;Parent=Msa0106290-mRNA-1 |
| chr1_3 | exon | 15489344 | 15489606 | 15489344 | ID=Msa0106290-mRNA-1:exon:5955;Parent=Msa0106290-mRNA-1 |
| chr1_3 | exon | 15490530 | 15491413 | 15490530 | ID=Msa0106290-mRNA-1:exon:5954;Parent=Msa0106290-mRNA-1 |
| chr1_3 | five_prime_UTR | 15491110 | 15491413 | 15491110 | ID=Msa0106290-mRNA-1:five_prime_utr;Parent=Msa0106290-mRNA-1 |
| chr1_3 | CDS | 15490530 | 15491109 | 15490530 | ID=Msa0106290-mRNA-1:cds;Parent=Msa0106290-mRNA-1 |
| chr1_3 | CDS | 15489344 | 15489606 | 15489344 | ID=Msa0106290-mRNA-1:cds;Parent=Msa0106290-mRNA-1 |
| chr1_3 | CDS | 15488756 | 15488893 | 15488756 | ID=Msa0106290-mRNA-1:cds;Parent=Msa0106290-mRNA-1 |
| chr1_3 | CDS | 15487881 | 15488129 | 15487881 | ID=Msa0106290-mRNA-1:cds;Parent=Msa0106290-mRNA-1 |
| chr1_3 | CDS | 15486835 | 15486948 | 15486835 | ID=Msa0106290-mRNA-1:cds;Parent=Msa0106290-mRNA-1 |
| chr1_3 | three_prime_UTR | 15486500 | 15486834 | 15486500 | ID=Msa0106290-mRNA-1:three_prime_utr;Parent=Msa0106290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
