Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599800 | XP_003605920.1 | 90.868 | 219 | 15 | 1 | 30 | 243 | 27 | 245 | 7.54e-142 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599800 | sp|P0DKI1|SDH32_ARATH | 38.129 | 139 | 69 | 3 | 112 | 233 | 64 | 202 | 4.87e-22 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106290 | Msa0599800 | 0.822944 | 1.806025e-53 | -8.615850e-47 |
| Msa0543980 | Msa0599800 | 0.829879 | 4.021100e-55 | -8.615850e-47 |
| Msa0599800 | Msa1348470 | 0.815361 | 9.615952e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599800 | MtrunA17_Chr4g0024541 | 90.868 | 219 | 15 | 1 | 30 | 243 | 27 | 245 | 6.93e-146 | 407 |
| Msa0599800 | MtrunA17_Chr2g0310041 | 38.889 | 126 | 43 | 4 | 47 | 151 | 22 | 134 | 2.75e-14 | 68.9 |
| Msa0599800 | MtrunA17_Chr4g0024571 | 46.739 | 92 | 28 | 3 | 81 | 151 | 842 | 933 | 8.25e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599800 | AT5G09600.2 | 38.129 | 139 | 69 | 3 | 112 | 233 | 37 | 175 | 3.59e-23 | 93.2 |
| Msa0599800 | AT5G09600.3 | 38.129 | 139 | 69 | 3 | 112 | 233 | 64 | 202 | 4.95e-23 | 93.6 |
| Msa0599800 | AT5G09600.1 | 38.129 | 139 | 69 | 3 | 112 | 233 | 64 | 202 | 4.95e-23 | 93.6 |
| Msa0599800 | AT4G32210.1 | 38.129 | 139 | 69 | 3 | 112 | 233 | 64 | 202 | 4.95e-23 | 93.6 |
Find 90 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACTTAATAATTACAATTT+AGG | 0.168288 | 4_2:-40068545 | Msa0599800:three_prime_UTR |
| CACCAATAGCATTGGATTCT+TGG | 0.198805 | 4_2:+40069304 | None:intergenic |
| TGCCAACGAGTTCAATTCTT+TGG | 0.263661 | 4_2:-40073133 | Msa0599800:intron |
| GTGTTCTGCGGCGGCGGTGG+CGG | 0.291042 | 4_2:+40073408 | None:intergenic |
| TCAATTTGCAATAGAATTGC+TGG | 0.304214 | 4_2:-40069020 | Msa0599800:CDS |
| CATGCTTTCCACATGTCATT+AGG | 0.313221 | 4_2:-40068614 | Msa0599800:three_prime_UTR |
| TCAAACACTGTTCAGGTATC+AGG | 0.320214 | 4_2:+40068794 | None:intergenic |
| ACAGGAAGATGAGGAGATAA+TGG | 0.320617 | 4_2:+40069071 | None:intergenic |
| TGTTCTGCGGCGGCGGTGGC+GGG | 0.371942 | 4_2:+40073409 | None:intergenic |
| GAAAGCTGAGGCTGATAAAC+AGG | 0.389683 | 4_2:+40069053 | None:intergenic |
| AAAACACATCACCGAAGTTT+CGG | 0.394338 | 4_2:+40068474 | None:intergenic |
| ACCGGACTGCTTTGTCTCAC+TGG | 0.403158 | 4_2:+40069100 | None:intergenic |
| GAGGTGTTCTGCGGCGGCGG+TGG | 0.410680 | 4_2:+40073405 | None:intergenic |
| AACAATTACTTGCAATTTGA+GGG | 0.410821 | 4_2:+40068442 | None:intergenic |
| CAACAATTACTTGCAATTTG+AGG | 0.415675 | 4_2:+40068441 | None:intergenic |
| TATCAGAGATATCAGGCTCT+TGG | 0.419479 | 4_2:-40069380 | Msa0599800:intron |
| AATGGTTTACCTAAGCTTGC+TGG | 0.423627 | 4_2:-40073159 | Msa0599800:CDS |
| CTCAGAATCAAACACTGTTC+AGG | 0.430029 | 4_2:+40068787 | None:intergenic |
| AGGAGATAATGGGCGAAAAC+CGG | 0.437470 | 4_2:+40069082 | None:intergenic |
| CACCAAGAATCCAATGCTAT+TGG | 0.443714 | 4_2:-40069306 | Msa0599800:intron |
| GATATACATGAAAGTGGGTT+TGG | 0.443895 | 4_2:-40068961 | Msa0599800:CDS |
| TCTTCCATCCCTCGCTCCAC+CGG | 0.453645 | 4_2:-40073442 | Msa0599800:CDS |
| GGAAGATGATAAGAAGAACT+TGG | 0.454548 | 4_2:+40073489 | None:intergenic |
| GCTGACACATTGGGATTGGC+TGG | 0.459366 | 4_2:-40069158 | Msa0599800:CDS |
| CGGCGGCGGTGGCGGGAGAG+AGG | 0.462506 | 4_2:+40073416 | None:intergenic |
| CAGGAAGATGAGGAGATAAT+GGG | 0.473682 | 4_2:+40069072 | None:intergenic |
| GTGGAGGTGTTCTGCGGCGG+CGG | 0.479737 | 4_2:+40073402 | None:intergenic |
| GGATCCGGTGGAGCGAGGGA+TGG | 0.482734 | 4_2:+40073438 | None:intergenic |
| AGAGGGATCCGGTGGAGCGA+GGG | 0.482779 | 4_2:+40073434 | None:intergenic |
| AATTGCACTATACAGATGAT+AGG | 0.483923 | 4_2:+40068848 | None:intergenic |
| ATGAGAAATGAAAATTAAGC+GGG | 0.484189 | 4_2:-40068307 | Msa0599800:three_prime_UTR |
| TTATATGATATACATGAAAG+TGG | 0.485153 | 4_2:-40068967 | Msa0599800:CDS |
| TAGAATACGAACTGGTAGAA+TGG | 0.485364 | 4_2:+40068921 | None:intergenic |
| GGTTGAAGAAAGAGAAGAAG+AGG | 0.494925 | 4_2:+40073468 | None:intergenic |
| TGGACTGGACACTAATGTGC+TGG | 0.504894 | 4_2:-40069360 | Msa0599800:CDS |
| GTGCTGGCTGGAGCTAGATA+TGG | 0.506804 | 4_2:-40069344 | Msa0599800:CDS |
| GAGTGGTGGTGGTACGGTGG+AGG | 0.509089 | 4_2:+40073386 | None:intergenic |
| ACCACCACCACTCTTCCCTT+CGG | 0.509378 | 4_2:-40073376 | Msa0599800:intron |
| TTGGCATGACCAGCAAGCTT+AGG | 0.510352 | 4_2:+40073150 | None:intergenic |
| GAGATATCAGGCTCTTGGAC+TGG | 0.510444 | 4_2:-40069375 | Msa0599800:CDS |
| TACATGAAAGTGGGTTTGGT+TGG | 0.513953 | 4_2:-40068957 | Msa0599800:CDS |
| CTGAACAGTGTTTGATTCTG+AGG | 0.515913 | 4_2:-40068786 | Msa0599800:intron |
| GAGAGGGATCCGGTGGAGCG+AGG | 0.518177 | 4_2:+40073433 | None:intergenic |
| TATATGATATACATGAAAGT+GGG | 0.518946 | 4_2:-40068966 | Msa0599800:CDS |
| AAGGAACTCACCAATAGCAT+TGG | 0.519323 | 4_2:+40069296 | None:intergenic |
| TTGATGAATAGAATACGAAC+TGG | 0.519628 | 4_2:+40068913 | None:intergenic |
| AGGGAAGAGTGGTGGTGGTA+CGG | 0.519672 | 4_2:+40073380 | None:intergenic |
| GGCGGCGGTGGCGGGAGAGA+GGG | 0.532726 | 4_2:+40073417 | None:intergenic |
| GAAGAGTGGTGGTGGTACGG+TGG | 0.534709 | 4_2:+40073383 | None:intergenic |
| ACCAGTGAGACAAAGCAGTC+CGG | 0.535769 | 4_2:-40069101 | Msa0599800:CDS |
| TTGATTTGGCTGATCTGAGA+AGG | 0.536410 | 4_2:+40073515 | None:intergenic |
| CAATAGCATTGGATTCTTGG+TGG | 0.539060 | 4_2:+40069307 | None:intergenic |
| TCTACCAAGGGACATGTCAA+TGG | 0.544954 | 4_2:-40073177 | Msa0599800:CDS |
| GGTGGCGGGAGAGAGGGATC+CGG | 0.549472 | 4_2:+40073423 | None:intergenic |
| GGGTGCTGACACATTGGGAT+TGG | 0.554674 | 4_2:-40069162 | Msa0599800:CDS |
| CAATTACTTGCAATTTGAGG+GGG | 0.558329 | 4_2:+40068444 | None:intergenic |
| CTGGACACTAATGTGCTGGC+TGG | 0.565168 | 4_2:-40069356 | Msa0599800:CDS |
| AAGTGTGGGTGCTGACACAT+TGG | 0.570843 | 4_2:-40069168 | Msa0599800:CDS |
| TAAACCATTGACATGTCCCT+TGG | 0.572355 | 4_2:+40073173 | None:intergenic |
| AAATCTCAACGGCAAGTAGG+TGG | 0.577349 | 4_2:+40068886 | None:intergenic |
| CAGAAATCTCAACGGCAAGT+AGG | 0.577571 | 4_2:+40068883 | None:intergenic |
| GGCGGGAGAGAGGGATCCGG+TGG | 0.580462 | 4_2:+40073426 | None:intergenic |
| ATAGGGACTCAACACTCTGA+TGG | 0.585666 | 4_2:-40069207 | Msa0599800:intron |
| AGAAACTTTGAGAGAAGTGT+GGG | 0.587145 | 4_2:-40069182 | Msa0599800:CDS |
| TACCAAAGAATTGAACTCGT+TGG | 0.588237 | 4_2:+40073131 | None:intergenic |
| GGCTGATAAACAGGAAGATG+AGG | 0.590288 | 4_2:+40069062 | None:intergenic |
| GATGAGAAATGAAAATTAAG+CGG | 0.594984 | 4_2:-40068308 | Msa0599800:three_prime_UTR |
| ACCGAAGGGAAGAGTGGTGG+TGG | 0.598522 | 4_2:+40073375 | None:intergenic |
| CACATCACCGAAGTTTCGGA+TGG | 0.601856 | 4_2:+40068478 | None:intergenic |
| AAAGCAAGGTGACAGCAGCT+AGG | 0.607874 | 4_2:+40068991 | None:intergenic |
| GGAGCGAGGGATGGAAGAGA+AGG | 0.608241 | 4_2:+40073447 | None:intergenic |
| ACGGTGGAGGTGTTCTGCGG+CGG | 0.625160 | 4_2:+40073399 | None:intergenic |
| ATCGGTACCGAAGGGAAGAG+TGG | 0.627136 | 4_2:+40073369 | None:intergenic |
| GAACTGGTAGAATGGATCAA+AGG | 0.627943 | 4_2:+40068929 | None:intergenic |
| ACAATTACTTGCAATTTGAG+GGG | 0.628986 | 4_2:+40068443 | None:intergenic |
| AATGAACTCCTAATGACATG+TGG | 0.633045 | 4_2:+40068606 | None:intergenic |
| CAGATGATAGGACATGGCTA+AGG | 0.634205 | 4_2:+40068860 | None:intergenic |
| AGTGTGGGTGCTGACACATT+GGG | 0.635508 | 4_2:-40069167 | Msa0599800:CDS |
| GGTACGGTGGAGGTGTTCTG+CGG | 0.636709 | 4_2:+40073396 | None:intergenic |
| GCGGATGAAAACTCTACCAA+GGG | 0.646432 | 4_2:-40073189 | Msa0599800:CDS |
| AGCGGATGAAAACTCTACCA+AGG | 0.652915 | 4_2:-40073190 | Msa0599800:CDS |
| AATTACTTGCAATTTGAGGG+GGG | 0.654606 | 4_2:+40068445 | None:intergenic |
| ATGTGGAAAGCATGCCAACA+TGG | 0.655221 | 4_2:+40068623 | None:intergenic |
| GGCTAAGGCAGAAATCTCAA+CGG | 0.655737 | 4_2:+40068875 | None:intergenic |
| TGATCTGAGAAGGCAAGACA+TGG | 0.661362 | 4_2:+40073525 | None:intergenic |
| AAGAAACTTTGAGAGAAGTG+TGG | 0.671681 | 4_2:-40069183 | Msa0599800:CDS |
| ACTATACAGATGATAGGACA+TGG | 0.695753 | 4_2:+40068854 | None:intergenic |
| GGTACCGAAGGGAAGAGTGG+TGG | 0.698603 | 4_2:+40073372 | None:intergenic |
| GAAAGCGTCGAAGAAAGCTG+AGG | 0.708046 | 4_2:+40069041 | None:intergenic |
| TGAGAAATGAAAATTAAGCG+GGG | 0.718140 | 4_2:-40068306 | Msa0599800:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACAAAAAAAAAAAAAAAA+CGG | + | chr4_2:40069129-40069148 | None:intergenic | 10.0% |
| !! | TAATCATGATGATATATTTA+AGG | + | chr4_2:40068607-40068626 | None:intergenic | 15.0% |
| !! | AAATATATCATCATGATTAT+TGG | - | chr4_2:40068608-40068627 | Msa0599800:three_prime_UTR | 15.0% |
| !!! | TTTTATTTTTTTTCATTCAG+CGG | - | chr4_2:40068703-40068722 | Msa0599800:intron | 15.0% |
| !!! | TTTTGAAATTAATTTTAGCA+GGG | + | chr4_2:40068946-40068965 | None:intergenic | 15.0% |
| !!! | TTTTTGAAATTAATTTTAGC+AGG | + | chr4_2:40068947-40068966 | None:intergenic | 15.0% |
| !!! | TGCTATTTAATACAAATTTT+TGG | - | chr4_2:40069049-40069068 | Msa0599800:CDS | 15.0% |
| !!! | TAAAATTTGACTAGTTTAAT+GGG | - | chr4_2:40069423-40069442 | Msa0599800:intron | 15.0% |
| !!! | GATTTATTTTTGTTAGTTAT+TGG | - | chr4_2:40070453-40070472 | Msa0599800:intron | 15.0% |
| !!! | TTAAAGTTTGATTAGTTTAA+TGG | - | chr4_2:40071117-40071136 | Msa0599800:intron | 15.0% |
| !!! | TAAAGTTTGATTAGTTTAAT+GGG | - | chr4_2:40071118-40071137 | Msa0599800:intron | 15.0% |
| !! | ATAAATAATAATCTATGTAC+AGG | - | chr4_2:40071595-40071614 | Msa0599800:intron | 15.0% |
| !!! | ACATAACATTTTTATGTTTT+TGG | - | chr4_2:40073571-40073590 | Msa0599800:five_prime_UTR | 15.0% |
| !!! | GAGTTTTTAGTTATATTAAG+TGG | - | chr4_2:40068858-40068877 | Msa0599800:CDS | 20.0% |
| !!! | TTTGAAATTAATTTTAGCAG+GGG | + | chr4_2:40068945-40068964 | None:intergenic | 20.0% |
| !!! | TACAAATTTTTGGTTAATAG+TGG | - | chr4_2:40069059-40069078 | Msa0599800:CDS | 20.0% |
| !!! | ATACTATGATCTAAACTTTT+AGG | + | chr4_2:40069253-40069272 | None:intergenic | 20.0% |
| !! | ATGTTTGTTTAAATTAAGAC+TGG | - | chr4_2:40069359-40069378 | Msa0599800:CDS | 20.0% |
| !!! | CTAAAATTTGACTAGTTTAA+TGG | - | chr4_2:40069422-40069441 | Msa0599800:intron | 20.0% |
| !!! | AAAATTTGACTAGTTTAATG+GGG | - | chr4_2:40069424-40069443 | Msa0599800:intron | 20.0% |
| !! | TTGAGTAAATAGTTATCAAT+TGG | + | chr4_2:40069591-40069610 | None:intergenic | 20.0% |
| !! | TGATAACTATTTACTCAATA+AGG | - | chr4_2:40069593-40069612 | Msa0599800:intron | 20.0% |
| !! | ATTCAAAATCAAAAGCAAAT+AGG | + | chr4_2:40070017-40070036 | None:intergenic | 20.0% |
| !!! | TCTAAAACAAATATACATGT+GGG | + | chr4_2:40070481-40070500 | None:intergenic | 20.0% |
| !!! | ATCTAAAACAAATATACATG+TGG | + | chr4_2:40070482-40070501 | None:intergenic | 20.0% |
| !!! | ACATGTATATTTGTTTTAGA+TGG | - | chr4_2:40070481-40070500 | Msa0599800:intron | 20.0% |
| !! | TTTAGTAATTAAGTACGTAA+AGG | - | chr4_2:40070970-40070989 | Msa0599800:intron | 20.0% |
| !! | TTAATTTCCATGATTTCATA+TGG | - | chr4_2:40071002-40071021 | Msa0599800:intron | 20.0% |
| !! | TATTTAGTAAGTTTGCATAT+TGG | - | chr4_2:40071075-40071094 | Msa0599800:intron | 20.0% |
| !!! | AAAGTTTGATTAGTTTAATG+GGG | - | chr4_2:40071119-40071138 | Msa0599800:intron | 20.0% |
| !! | CTAAAGAAATGGTTATAAAT+TGG | + | chr4_2:40071294-40071313 | None:intergenic | 20.0% |
| !!! | TTTTGTAGATTTTGAACAAA+AGG | - | chr4_2:40071547-40071566 | Msa0599800:intron | 20.0% |
| !! | AAAAAAGATCCTTTATGTTT+AGG | + | chr4_2:40071688-40071707 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATAATTAG+CGG | - | chr4_2:40071824-40071843 | Msa0599800:intron | 20.0% |
| !!! | AAGAAAAAGCATGAAAAATA+TGG | + | chr4_2:40071965-40071984 | None:intergenic | 20.0% |
| !!! | TTTTCATTCTAGAACAAATA+AGG | + | chr4_2:40072215-40072234 | None:intergenic | 20.0% |
| !!! | TTTTCATTCTAGAACAAATA+AGG | + | chr4_2:40072215-40072234 | None:intergenic | 20.0% |
| !! | ATGACATTTACATTTCAATA+GGG | - | chr4_2:40072687-40072706 | Msa0599800:intron | 20.0% |
| !! | GTATATCATATAAAAAAGCA+AGG | + | chr4_2:40072937-40072956 | None:intergenic | 20.0% |
| !! | TTATATGATATACATGAAAG+TGG | - | chr4_2:40072944-40072963 | Msa0599800:intron | 20.0% |
| !! | TATATGATATACATGAAAGT+GGG | - | chr4_2:40072945-40072964 | Msa0599800:intron | 20.0% |
| !! | AATATGATGAATCAAGAAAA+GGG | + | chr4_2:40073159-40073178 | None:intergenic | 20.0% |
| !! | AAATATGATGAATCAAGAAA+AGG | + | chr4_2:40073160-40073179 | None:intergenic | 20.0% |
| !!! | TTTTCTTGATTCATCATATT+TGG | - | chr4_2:40073159-40073178 | Msa0599800:CDS | 20.0% |
| !!! | TCATCATATTTGGTTTTTTA+TGG | - | chr4_2:40073169-40073188 | Msa0599800:CDS | 20.0% |
| !! | CGACTTAATAATTACAATTT+AGG | - | chr4_2:40073366-40073385 | Msa0599800:intron | 20.0% |
| !!! | TGTGTTTTAGGAAAATTCTT+TGG | - | chr4_2:40068888-40068907 | Msa0599800:CDS | 25.0% |
| ! | TGAGCATGAAATGAAATAAT+TGG | - | chr4_2:40068989-40069008 | Msa0599800:CDS | 25.0% |
| ! | GAAATGAAATAATTGGATAG+CGG | - | chr4_2:40068996-40069015 | Msa0599800:CDS | 25.0% |
| !!! | ATTTTGAGTTTTGACAATAC+TGG | - | chr4_2:40069158-40069177 | Msa0599800:CDS | 25.0% |
| !!! | TTTTGAAATTTTGGGTGATT+GGG | - | chr4_2:40069317-40069336 | Msa0599800:CDS | 25.0% |
| ! | AAACTAATTCCATTATACCT+AGG | - | chr4_2:40069532-40069551 | Msa0599800:intron | 25.0% |
| ! | AACTAATTCCATTATACCTA+GGG | - | chr4_2:40069533-40069552 | Msa0599800:intron | 25.0% |
| ! | CTCTCATTCAATTTCAAAAA+GGG | + | chr4_2:40069645-40069664 | None:intergenic | 25.0% |
| ! | TCTCTCATTCAATTTCAAAA+AGG | + | chr4_2:40069646-40069665 | None:intergenic | 25.0% |
| ! | AAAACCATGTATATCATGAA+TGG | - | chr4_2:40070113-40070132 | Msa0599800:intron | 25.0% |
| !!! | TTGTTTTAGATGGTTTGAAA+CGG | - | chr4_2:40070491-40070510 | Msa0599800:intron | 25.0% |
| !!! | TTGATTTTTGAGGATTTAGT+AGG | + | chr4_2:40070543-40070562 | None:intergenic | 25.0% |
| !! | ATTTTCTCCATATGAAATCA+TGG | + | chr4_2:40071012-40071031 | None:intergenic | 25.0% |
| ! | ATTGGATATGATTAGATTTC+TGG | + | chr4_2:40071276-40071295 | None:intergenic | 25.0% |
| !! | CAAAACAACTTCTAAAGAAA+TGG | + | chr4_2:40071305-40071324 | None:intergenic | 25.0% |
| !!! | CATTTCTTTAGAAGTTGTTT+TGG | - | chr4_2:40071303-40071322 | Msa0599800:intron | 25.0% |
| !!! | TTTAGAAGTTGTTTTGGATA+TGG | - | chr4_2:40071309-40071328 | Msa0599800:intron | 25.0% |
| ! | TTAAATGACTAGGTACAATT+AGG | + | chr4_2:40071370-40071389 | None:intergenic | 25.0% |
| ! | TGTATCTAACTTAAATGACT+AGG | + | chr4_2:40071380-40071399 | None:intergenic | 25.0% |
| ! | TATAACAGGCATAACATATA+AGG | + | chr4_2:40071422-40071441 | None:intergenic | 25.0% |
| ! | TATGCCTGTTATATTATAAG+TGG | - | chr4_2:40071429-40071448 | Msa0599800:intron | 25.0% |
| ! | ATTATCATGTCAATAACAAC+CGG | + | chr4_2:40071483-40071502 | None:intergenic | 25.0% |
| ! | TAATCTATGTACAGGAAATT+AGG | - | chr4_2:40071603-40071622 | Msa0599800:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr4_2:40071799-40071818 | None:intergenic | 25.0% |
| ! | TAACAATCCTAACTAAAAAC+TGG | - | chr4_2:40071937-40071956 | Msa0599800:intron | 25.0% |
| ! | TAATTATGCATCACATTATC+TGG | + | chr4_2:40072259-40072278 | None:intergenic | 25.0% |
| ! | ATTTCTAAATCTAATTGCCA+TGG | - | chr4_2:40072495-40072514 | Msa0599800:intron | 25.0% |
| ! | GATATAAAAGAACAATTCCA+TGG | + | chr4_2:40072515-40072534 | None:intergenic | 25.0% |
| !! | TCTTTTATATCAGAGATATC+AGG | - | chr4_2:40072524-40072543 | Msa0599800:intron | 25.0% |
| ! | ACTCAATTTGCAGATAATAA+AGG | + | chr4_2:40072637-40072656 | None:intergenic | 25.0% |
| ! | CAAATTGAGTCTAATCTATT+TGG | - | chr4_2:40072647-40072666 | Msa0599800:intron | 25.0% |
| !!! | TAATCTATTTGGCTTTCTTA+AGG | - | chr4_2:40072658-40072677 | Msa0599800:intron | 25.0% |
| ! | GATGACATTTACATTTCAAT+AGG | - | chr4_2:40072686-40072705 | Msa0599800:intron | 25.0% |
| ! | TCATACATTAGTCAAAAACA+AGG | + | chr4_2:40073234-40073253 | None:intergenic | 25.0% |
| !! | ATGTATGATGTCATATTTTC+AGG | - | chr4_2:40073246-40073265 | Msa0599800:intron | 25.0% |
| ! | AACAATTACTTGCAATTTGA+GGG | + | chr4_2:40073472-40073491 | None:intergenic | 25.0% |
| !!! | CAAGTGATAATGCATTTTAA+GGG | + | chr4_2:40073524-40073543 | None:intergenic | 25.0% |
| !!! | ACAAGTGATAATGCATTTTA+AGG | + | chr4_2:40073525-40073544 | None:intergenic | 25.0% |
| ! | GATGAGAAATGAAAATTAAG+CGG | - | chr4_2:40073603-40073622 | Msa0599800:five_prime_UTR | 25.0% |
| ! | ATGAGAAATGAAAATTAAGC+GGG | - | chr4_2:40073604-40073623 | Msa0599800:five_prime_UTR | 25.0% |
| !!! | GAAGAACTTGGATTTTGATT+TGG | + | chr4_2:40068413-40068432 | None:intergenic | 30.0% |
| AATTGGAGAAATGAGAGAAT+CGG | + | chr4_2:40068563-40068582 | None:intergenic | 30.0% | |
| TAGTACAAAACAAAACTACG+AGG | + | chr4_2:40068916-40068935 | None:intergenic | 30.0% | |
| !!! | GTAGTTTTGTTTTGTACTAC+TGG | - | chr4_2:40068917-40068936 | Msa0599800:CDS | 30.0% |
| ATACTGTTATGTAATTGAGC+TGG | - | chr4_2:40069294-40069313 | Msa0599800:intron | 30.0% | |
| !!! | TTGAGCTGGTTTTGAAATTT+TGG | - | chr4_2:40069308-40069327 | Msa0599800:CDS | 30.0% |
| !!! | TGAGCTGGTTTTGAAATTTT+GGG | - | chr4_2:40069309-40069328 | Msa0599800:CDS | 30.0% |
| !!! | GTTTTGAAATTTTGGGTGAT+TGG | - | chr4_2:40069316-40069335 | Msa0599800:CDS | 30.0% |
| ATTGGGCAAATTTAGTGTAT+AGG | - | chr4_2:40069334-40069353 | Msa0599800:CDS | 30.0% | |
| TTGGGCAAATTTAGTGTATA+GGG | - | chr4_2:40069335-40069354 | Msa0599800:CDS | 30.0% | |
| GGTTACTTAATTCTGCATAT+TGG | - | chr4_2:40069380-40069399 | Msa0599800:intron | 30.0% | |
| CATTCAATTTCAAAAAGGGA+GGG | + | chr4_2:40069641-40069660 | None:intergenic | 30.0% | |
| TCATTCAATTTCAAAAAGGG+AGG | + | chr4_2:40069642-40069661 | None:intergenic | 30.0% | |
| TTGAATGAGAGAGAAATCTA+TGG | - | chr4_2:40069654-40069673 | Msa0599800:intron | 30.0% | |
| TTCAGAATAACGATTACACA+TGG | + | chr4_2:40069695-40069714 | None:intergenic | 30.0% | |
| GGGTTGGATTTATATAGATT+GGG | - | chr4_2:40069721-40069740 | Msa0599800:intron | 30.0% | |
| TTGTATGCTAGTGTGATATA+TGG | - | chr4_2:40069940-40069959 | Msa0599800:intron | 30.0% | |
| AGCGATCAAAGAGATAAAAT+AGG | + | chr4_2:40069968-40069987 | None:intergenic | 30.0% | |
| ! | ATTTTATCTCTTTGATCGCT+TGG | - | chr4_2:40069968-40069987 | Msa0599800:intron | 30.0% |
| GTTCAGTATTTGCTTAAATC+TGG | - | chr4_2:40070084-40070103 | Msa0599800:intron | 30.0% | |
| CATAAAATACTAGAAACGCA+TGG | + | chr4_2:40070176-40070195 | None:intergenic | 30.0% | |
| CAAACTATTATGATAGCAAC+TGG | + | chr4_2:40070343-40070362 | None:intergenic | 30.0% | |
| ACATAGTAGATGAAGTTTCT+AGG | + | chr4_2:40070422-40070441 | None:intergenic | 30.0% | |
| ! | ATCTACTATGTTCTAGCTAT+GGG | - | chr4_2:40070431-40070450 | Msa0599800:intron | 30.0% |
| !!! | AGTAAGTGAGTTGATTTTTG+AGG | + | chr4_2:40070553-40070572 | None:intergenic | 30.0% |
| ACAATACAGAAAAGAGATAG+AGG | + | chr4_2:40070649-40070668 | None:intergenic | 30.0% | |
| ! | TTTTGTAGTTAGAGAAGTTG+TGG | - | chr4_2:40070710-40070729 | Msa0599800:intron | 30.0% |
| CAGTTATTTGAGAGGAAATT+GGG | - | chr4_2:40070851-40070870 | Msa0599800:intron | 30.0% | |
| AGTTATTTGAGAGGAAATTG+GGG | - | chr4_2:40070852-40070871 | Msa0599800:intron | 30.0% | |
| CAGTGAAATCATGAAAACAT+GGG | + | chr4_2:40071054-40071073 | None:intergenic | 30.0% | |
| ACAGTGAAATCATGAAAACA+TGG | + | chr4_2:40071055-40071074 | None:intergenic | 30.0% | |
| TTAGTTTAATGGGGAAACTT+TGG | - | chr4_2:40071128-40071147 | Msa0599800:intron | 30.0% | |
| !! | AGAGTCAATTTTTCAAACCA+AGG | + | chr4_2:40071178-40071197 | None:intergenic | 30.0% |
| TATAAGGAAAAGATGTCCAA+CGG | + | chr4_2:40071406-40071425 | None:intergenic | 30.0% | |
| GAAGCCACTTATAATATAAC+AGG | + | chr4_2:40071436-40071455 | None:intergenic | 30.0% | |
| TCTTATTAATACCTGTTTGC+AGG | - | chr4_2:40071454-40071473 | Msa0599800:intron | 30.0% | |
| TTATCATGTCAATAACAACC+GGG | + | chr4_2:40071482-40071501 | None:intergenic | 30.0% | |
| CTACAAAAGAAATCACAACA+TGG | + | chr4_2:40071535-40071554 | None:intergenic | 30.0% | |
| AGGAAATTAGGAGCTAAAAA+AGG | - | chr4_2:40071615-40071634 | Msa0599800:intron | 30.0% | |
| AATTAGGAGCTAAAAAAGGA+AGG | - | chr4_2:40071619-40071638 | Msa0599800:intron | 30.0% | |
| CCTTTATGTTTAGGTAATCT+AGG | + | chr4_2:40071679-40071698 | None:intergenic | 30.0% | |
| CCTAGATTACCTAAACATAA+AGG | - | chr4_2:40071676-40071695 | Msa0599800:intron | 30.0% | |
| !!! | TATGGTTCCAGTTTTTAGTT+AGG | + | chr4_2:40071947-40071966 | None:intergenic | 30.0% |
| AAACTATATTTCGTGCAAGA+TGG | + | chr4_2:40072182-40072201 | None:intergenic | 30.0% | |
| ATACTATATTTCGTGCAAGA+TGG | + | chr4_2:40072333-40072352 | None:intergenic | 30.0% | |
| TAATTATGCATCACGTTATC+TGG | + | chr4_2:40072453-40072472 | None:intergenic | 30.0% | |
| TCAATTTGCAATAGAATTGC+TGG | - | chr4_2:40072891-40072910 | Msa0599800:intron | 30.0% | |
| TTGATGAATAGAATACGAAC+TGG | + | chr4_2:40073001-40073020 | None:intergenic | 30.0% | |
| AATTGCACTATACAGATGAT+AGG | + | chr4_2:40073066-40073085 | None:intergenic | 30.0% | |
| ACAATTACTTGCAATTTGAG+GGG | + | chr4_2:40073471-40073490 | None:intergenic | 30.0% | |
| CAACAATTACTTGCAATTTG+AGG | + | chr4_2:40073473-40073492 | None:intergenic | 30.0% | |
| TGAGAAATGAAAATTAAGCG+GGG | - | chr4_2:40073605-40073624 | Msa0599800:five_prime_UTR | 30.0% | |
| GGAAGATGATAAGAAGAACT+TGG | + | chr4_2:40068425-40068444 | None:intergenic | 35.0% | |
| TACCAAAGAATTGAACTCGT+TGG | + | chr4_2:40068783-40068802 | None:intergenic | 35.0% | |
| ! | AGTGGAGTGAAATGTGTTTT+AGG | - | chr4_2:40068876-40068895 | Msa0599800:CDS | 35.0% |
| TGGGCAAATTTAGTGTATAG+GGG | - | chr4_2:40069336-40069355 | Msa0599800:CDS | 35.0% | |
| AATCGTTATTCTGAACCGAA+CGG | - | chr4_2:40069700-40069719 | Msa0599800:intron | 35.0% | |
| CTATATAAATCCAACCCGTT+CGG | + | chr4_2:40069718-40069737 | None:intergenic | 35.0% | |
| ! | CGGGTTGGATTTATATAGAT+TGG | - | chr4_2:40069720-40069739 | Msa0599800:intron | 35.0% |
| ! | TAGCCTTGCAAAATGAGAAA+CGG | + | chr4_2:40069845-40069864 | None:intergenic | 35.0% |
| ! | TTTCTCATTTTGCAAGGCTA+TGG | - | chr4_2:40069845-40069864 | Msa0599800:intron | 35.0% |
| !! | GGTTGATAAGAAAGAAGAAG+AGG | - | chr4_2:40069989-40070008 | Msa0599800:intron | 35.0% |
| AGCTCCATTCATGATATACA+TGG | + | chr4_2:40070120-40070139 | None:intergenic | 35.0% | |
| GTATATCATGAATGGAGCTT+AGG | - | chr4_2:40070121-40070140 | Msa0599800:intron | 35.0% | |
| ! | TGTTGAATGCTTTTCTGTGT+TGG | - | chr4_2:40070243-40070262 | Msa0599800:intron | 35.0% |
| ! | GTTGAATGCTTTTCTGTGTT+GGG | - | chr4_2:40070244-40070263 | Msa0599800:intron | 35.0% |
| CAAAAACTAACATCACAGCT+AGG | + | chr4_2:40070382-40070401 | None:intergenic | 35.0% | |
| ! | GTAGATGAAGTTTCTAGGAA+GGG | + | chr4_2:40070417-40070436 | None:intergenic | 35.0% |
| ! | AGTAGATGAAGTTTCTAGGA+AGG | + | chr4_2:40070418-40070437 | None:intergenic | 35.0% |
| ! | CATCTACTATGTTCTAGCTA+TGG | - | chr4_2:40070430-40070449 | Msa0599800:intron | 35.0% |
| !! | GGAGGAAGTATAACAAGTTT+TGG | + | chr4_2:40070616-40070635 | None:intergenic | 35.0% |
| AAAAGAGATAGAGGAGAATG+AGG | + | chr4_2:40070640-40070659 | None:intergenic | 35.0% | |
| TGTGAAGTAACTGTTAGTAG+TGG | - | chr4_2:40070666-40070685 | Msa0599800:intron | 35.0% | |
| TGTTGTAGTTAGAGAAGTTG+TGG | - | chr4_2:40070791-40070810 | Msa0599800:intron | 35.0% | |
| TAAGCATCCAGTTATTTGAG+AGG | - | chr4_2:40070843-40070862 | Msa0599800:intron | 35.0% | |
| CCAATTTCCTCTCAAATAAC+TGG | + | chr4_2:40070853-40070872 | None:intergenic | 35.0% | |
| CCAGTTATTTGAGAGGAAAT+TGG | - | chr4_2:40070850-40070869 | Msa0599800:intron | 35.0% | |
| !!! | AGTTGTTTTGGATATGGATG+TGG | - | chr4_2:40071315-40071334 | Msa0599800:intron | 35.0% |
| TGTGAACACAACTCATTAGA+AGG | + | chr4_2:40071347-40071366 | None:intergenic | 35.0% | |
| TTCTACTCTTAACTTCTCAC+TGG | - | chr4_2:40071649-40071668 | Msa0599800:intron | 35.0% | |
| ATGCAAATTACCTAAGCTGA+TGG | - | chr4_2:40071710-40071729 | Msa0599800:intron | 35.0% | |
| ! | GTAATTATATGTGTCGGTGT+CGG | + | chr4_2:40071793-40071812 | None:intergenic | 35.0% |
| TCTCAAATAATTAGCGGTGT+CGG | - | chr4_2:40071830-40071849 | Msa0599800:intron | 35.0% | |
| CAAGTTATGAAGCATGGATA+CGG | + | chr4_2:40071884-40071903 | None:intergenic | 35.0% | |
| TATGCACAAGTTATGAAGCA+TGG | + | chr4_2:40071890-40071909 | None:intergenic | 35.0% | |
| CTAGATAGCTGAGATATACA+CGG | + | chr4_2:40071988-40072007 | None:intergenic | 35.0% | |
| !! | AGTTCTGAACTGCTAACTTT+AGG | - | chr4_2:40072098-40072117 | Msa0599800:intron | 35.0% |
| ATGCTATATTTCGTGCAAGA+TGG | + | chr4_2:40072376-40072395 | None:intergenic | 35.0% | |
| !! | TCTATTTGGCTTTCTTAAGG+TGG | - | chr4_2:40072661-40072680 | Msa0599800:intron | 35.0% |
| ! | AAGAAACTTTGAGAGAAGTG+TGG | - | chr4_2:40072728-40072747 | Msa0599800:intron | 35.0% |
| ! | AGAAACTTTGAGAGAAGTGT+GGG | - | chr4_2:40072729-40072748 | Msa0599800:intron | 35.0% |
| !!! | TTGTCTCACTGGTTTTACTT+GGG | + | chr4_2:40072803-40072822 | None:intergenic | 35.0% |
| !!! | TTTGTCTCACTGGTTTTACT+TGG | + | chr4_2:40072804-40072823 | None:intergenic | 35.0% |
| ! | GATATACATGAAAGTGGGTT+TGG | - | chr4_2:40072950-40072969 | Msa0599800:intron | 35.0% |
| TAGAATACGAACTGGTAGAA+TGG | + | chr4_2:40072993-40073012 | None:intergenic | 35.0% | |
| ACTATACAGATGATAGGACA+TGG | + | chr4_2:40073060-40073079 | None:intergenic | 35.0% | |
| !! | CTTGTTTTCTTCAACCATGT+TGG | - | chr4_2:40073274-40073293 | Msa0599800:intron | 35.0% |
| AATGAACTCCTAATGACATG+TGG | + | chr4_2:40073308-40073327 | None:intergenic | 35.0% | |
| AAAACACATCACCGAAGTTT+CGG | + | chr4_2:40073440-40073459 | None:intergenic | 35.0% | |
| AATTACTTGCAATTTGAGGG+GGG | + | chr4_2:40073469-40073488 | None:intergenic | 35.0% | |
| CAATTACTTGCAATTTGAGG+GGG | + | chr4_2:40073470-40073489 | None:intergenic | 35.0% | |
| !! | TTGATTTGGCTGATCTGAGA+AGG | + | chr4_2:40068399-40068418 | None:intergenic | 40.0% |
| GGTTGAAGAAAGAGAAGAAG+AGG | + | chr4_2:40068446-40068465 | None:intergenic | 40.0% | |
| TAAACCATTGACATGTCCCT+TGG | + | chr4_2:40068741-40068760 | None:intergenic | 40.0% | |
| AATGGTTTACCTAAGCTTGC+TGG | - | chr4_2:40068752-40068771 | Msa0599800:intron | 40.0% | |
| TGCCAACGAGTTCAATTCTT+TGG | - | chr4_2:40068778-40068797 | Msa0599800:intron | 40.0% | |
| TTTGCAGCCAGGTAGTAAAT+CGG | + | chr4_2:40069209-40069228 | None:intergenic | 40.0% | |
| ! | TTCACAAGATTTTTGCAGCC+AGG | + | chr4_2:40069220-40069239 | None:intergenic | 40.0% |
| CTAGTTTAATGGGGAAGCTT+CGG | - | chr4_2:40069433-40069452 | Msa0599800:intron | 40.0% | |
| ATCGTTATTCTGAACCGAAC+GGG | - | chr4_2:40069701-40069720 | Msa0599800:intron | 40.0% | |
| AGCCTTGCAAAATGAGAAAC+GGG | + | chr4_2:40069844-40069863 | None:intergenic | 40.0% | |
| ! | CTTGTGTGACTTTTATGCTC+TGG | - | chr4_2:40069899-40069918 | Msa0599800:intron | 40.0% |
| ! | TGTGACTTTTATGCTCTGGT+AGG | - | chr4_2:40069903-40069922 | Msa0599800:intron | 40.0% |
| !!! | GGCTTTTTCAGGACAGTATA+TGG | + | chr4_2:40070155-40070174 | None:intergenic | 40.0% |
| !! | TAGAAACGCATGGCTTTTTC+AGG | + | chr4_2:40070166-40070185 | None:intergenic | 40.0% |
| GTCAGACTGTCTGTTGTTAT+TGG | - | chr4_2:40070302-40070321 | Msa0599800:intron | 40.0% | |
| AACAGAACCAAGGTGATTCT+TGG | + | chr4_2:40070590-40070609 | None:intergenic | 40.0% | |
| AACTGATAGCAGGAAAAGAG+AGG | - | chr4_2:40070820-40070839 | Msa0599800:intron | 40.0% | |
| TCTAGTGTTTAGCAGAAGCA+AGG | - | chr4_2:40070916-40070935 | Msa0599800:intron | 40.0% | |
| ! | ATGGGGAAACTTTGGCTTAA+TGG | - | chr4_2:40071136-40071155 | Msa0599800:intron | 40.0% |
| ! | TGGGGAAACTTTGGCTTAAT+GGG | - | chr4_2:40071137-40071156 | Msa0599800:intron | 40.0% |
| TTGGCTTAATGGGAGATTCA+TGG | - | chr4_2:40071147-40071166 | Msa0599800:intron | 40.0% | |
| AAGCTAATTCCATCGTACCT+AGG | - | chr4_2:40071230-40071249 | Msa0599800:intron | 40.0% | |
| AGCTAATTCCATCGTACCTA+GGG | - | chr4_2:40071231-40071250 | Msa0599800:intron | 40.0% | |
| ! | TTTTGGATATGGATGTGGTC+TGG | - | chr4_2:40071320-40071339 | Msa0599800:intron | 40.0% |
| TAAGTTAGATACACCTCCGT+TGG | - | chr4_2:40071387-40071406 | Msa0599800:intron | 40.0% | |
| CATGGTAAGCATCATGTAGA+AGG | + | chr4_2:40071517-40071536 | None:intergenic | 40.0% | |
| TAAGCTGATGGAATGAAGCA+CGG | - | chr4_2:40071722-40071741 | Msa0599800:intron | 40.0% | |
| CTGGAACAATGCATTTGTTC+AGG | + | chr4_2:40072240-40072259 | None:intergenic | 40.0% | |
| TATCAGAGATATCAGGCTCT+TGG | - | chr4_2:40072531-40072550 | Msa0599800:intron | 40.0% | |
| ! | CAATAGCATTGGATTCTTGG+TGG | + | chr4_2:40072607-40072626 | None:intergenic | 40.0% |
| CACCAAGAATCCAATGCTAT+TGG | - | chr4_2:40072605-40072624 | Msa0599800:intron | 40.0% | |
| ! | CACCAATAGCATTGGATTCT+TGG | + | chr4_2:40072610-40072629 | None:intergenic | 40.0% |
| AAGGAACTCACCAATAGCAT+TGG | + | chr4_2:40072618-40072637 | None:intergenic | 40.0% | |
| CAGGAAGATGAGGAGATAAT+GGG | + | chr4_2:40072842-40072861 | None:intergenic | 40.0% | |
| ACAGGAAGATGAGGAGATAA+TGG | + | chr4_2:40072843-40072862 | None:intergenic | 40.0% | |
| ! | TACATGAAAGTGGGTTTGGT+TGG | - | chr4_2:40072954-40072973 | Msa0599800:intron | 40.0% |
| GAACTGGTAGAATGGATCAA+AGG | + | chr4_2:40072985-40073004 | None:intergenic | 40.0% | |
| TCAAACACTGTTCAGGTATC+AGG | + | chr4_2:40073120-40073139 | None:intergenic | 40.0% | |
| CTCAGAATCAAACACTGTTC+AGG | + | chr4_2:40073127-40073146 | None:intergenic | 40.0% | |
| CTGAACAGTGTTTGATTCTG+AGG | - | chr4_2:40073125-40073144 | Msa0599800:intron | 40.0% | |
| CATGCTTTCCACATGTCATT+AGG | - | chr4_2:40073297-40073316 | Msa0599800:intron | 40.0% | |
| ! | CTGTTTTCCATCCGAAACTT+CGG | - | chr4_2:40073426-40073445 | Msa0599800:CDS | 40.0% |
| TGATCTGAGAAGGCAAGACA+TGG | + | chr4_2:40068389-40068408 | None:intergenic | 45.0% | |
| ! | ATGAGAGAATCGGTACCGAA+GGG | + | chr4_2:40068553-40068572 | None:intergenic | 45.0% |
| ! | AATGAGAGAATCGGTACCGA+AGG | + | chr4_2:40068554-40068573 | None:intergenic | 45.0% |
| AGCGGATGAAAACTCTACCA+AGG | - | chr4_2:40068721-40068740 | Msa0599800:intron | 45.0% | |
| GCGGATGAAAACTCTACCAA+GGG | - | chr4_2:40068722-40068741 | Msa0599800:intron | 45.0% | |
| TCTACCAAGGGACATGTCAA+TGG | - | chr4_2:40068734-40068753 | Msa0599800:intron | 45.0% | |
| CCAGGTAGTAAATCGGTCAA+AGG | + | chr4_2:40069202-40069221 | None:intergenic | 45.0% | |
| ! | CCTTTGACCGATTTACTACC+TGG | - | chr4_2:40069199-40069218 | Msa0599800:CDS | 45.0% |
| GGAGACTCATGGGAAAACAT+TGG | - | chr4_2:40069463-40069482 | Msa0599800:intron | 45.0% | |
| ACGAACAGCCCTAGGTATAA+TGG | + | chr4_2:40069544-40069563 | None:intergenic | 45.0% | |
| TTCAAAAAGGGAGGGAGACA+TGG | + | chr4_2:40069633-40069652 | None:intergenic | 45.0% | |
| TTATTCTGAACCGAACGGGT+TGG | - | chr4_2:40069705-40069724 | Msa0599800:intron | 45.0% | |
| ! | AGCCCGTTTCTCATTTTGCA+AGG | - | chr4_2:40069839-40069858 | Msa0599800:intron | 45.0% |
| TCTGCATGTATGCACTACAG+TGG | - | chr4_2:40070278-40070297 | Msa0599800:intron | 45.0% | |
| CTGCATGTATGCACTACAGT+GGG | - | chr4_2:40070279-40070298 | Msa0599800:intron | 45.0% | |
| TGCATGTATGCACTACAGTG+GGG | - | chr4_2:40070280-40070299 | Msa0599800:intron | 45.0% | |
| GAACCAAGGTGATTCTTGGA+GGG | + | chr4_2:40070586-40070605 | None:intergenic | 45.0% | |
| AGAACCAAGGTGATTCTTGG+AGG | + | chr4_2:40070587-40070606 | None:intergenic | 45.0% | |
| !!! | GTTTTGGCTGAACAGAACCA+AGG | + | chr4_2:40070600-40070619 | None:intergenic | 45.0% |
| AGAGATAGAGGAGAATGAGG+AGG | + | chr4_2:40070637-40070656 | None:intergenic | 45.0% | |
| GTGGTGTCTAAACTGATAGC+AGG | - | chr4_2:40070810-40070829 | Msa0599800:intron | 45.0% | |
| TTGAGAGGAAATTGGGGCTT+TGG | - | chr4_2:40070858-40070877 | Msa0599800:intron | 45.0% | |
| ! | GGAAATTGGGGCTTTGGTTT+AGG | - | chr4_2:40070864-40070883 | Msa0599800:intron | 45.0% |
| GGAGATTCATGGTGAAACCT+TGG | - | chr4_2:40071158-40071177 | Msa0599800:intron | 45.0% | |
| ACTAAACCACAAACAGCCCT+AGG | + | chr4_2:40071250-40071269 | None:intergenic | 45.0% | |
| AAGGAAAAGATGTCCAACGG+AGG | + | chr4_2:40071403-40071422 | None:intergenic | 45.0% | |
| AATACCTGTTTGCAGGTTCC+CGG | - | chr4_2:40071461-40071480 | Msa0599800:intron | 45.0% | |
| GTGCTTCATTCCATCAGCTT+AGG | + | chr4_2:40071723-40071742 | None:intergenic | 45.0% | |
| AATGAAGCACGGATACTCCT+CGG | - | chr4_2:40071733-40071752 | Msa0599800:intron | 45.0% | |
| ATGAAGCATGGATACGGACA+CGG | + | chr4_2:40071878-40071897 | None:intergenic | 45.0% | |
| CACTCGCAACATGTCAAAGA+AGG | + | chr4_2:40072137-40072156 | None:intergenic | 45.0% | |
| ATAGGGACTCAACACTCTGA+TGG | - | chr4_2:40072704-40072723 | Msa0599800:intron | 45.0% | |
| !! | AGGAGATAATGGGCGAAAAC+CGG | + | chr4_2:40072832-40072851 | None:intergenic | 45.0% |
| GGCTGATAAACAGGAAGATG+AGG | + | chr4_2:40072852-40072871 | None:intergenic | 45.0% | |
| GAAAGCTGAGGCTGATAAAC+AGG | + | chr4_2:40072861-40072880 | None:intergenic | 45.0% | |
| AAATCTCAACGGCAAGTAGG+TGG | + | chr4_2:40073028-40073047 | None:intergenic | 45.0% | |
| CAGAAATCTCAACGGCAAGT+AGG | + | chr4_2:40073031-40073050 | None:intergenic | 45.0% | |
| GGCTAAGGCAGAAATCTCAA+CGG | + | chr4_2:40073039-40073058 | None:intergenic | 45.0% | |
| CAGATGATAGGACATGGCTA+AGG | + | chr4_2:40073054-40073073 | None:intergenic | 45.0% | |
| ! | ATGTGGAAAGCATGCCAACA+TGG | + | chr4_2:40073291-40073310 | None:intergenic | 45.0% |
| !! | ATTAAATTAATTGAAAAAAT+TGG | + | chr4_2:40068580-40068599 | None:intergenic | 5.0% |
| TTGGCATGACCAGCAAGCTT+AGG | + | chr4_2:40068764-40068783 | None:intergenic | 50.0% | |
| ! | ATGGGGAAGCTTCGGTTTGA+CGG | - | chr4_2:40069441-40069460 | Msa0599800:intron | 50.0% |
| ACTCAATCACGAACAGCCCT+AGG | + | chr4_2:40069552-40069571 | None:intergenic | 50.0% | |
| TTGCCTGAGACTTGCACAAC+TGG | - | chr4_2:40069765-40069784 | Msa0599800:intron | 50.0% | |
| AAGCCCTCCAAGAATCACCT+TGG | - | chr4_2:40070580-40070599 | Msa0599800:intron | 50.0% | |
| GATAGAGGAGAATGAGGAGG+AGG | + | chr4_2:40070634-40070653 | None:intergenic | 50.0% | |
| ! | AAGCCTTATCCCACTACGTG+GGG | + | chr4_2:40070759-40070778 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACTACGT+GGG | + | chr4_2:40070760-40070779 | None:intergenic | 50.0% |
| ! | TTGGGGCTTTGGTTTAGGCA+AGG | - | chr4_2:40070869-40070888 | Msa0599800:intron | 50.0% |
| ! | TGGGGCTTTGGTTTAGGCAA+GGG | - | chr4_2:40070870-40070889 | Msa0599800:intron | 50.0% |
| ACAAACAGCCCTAGGTACGA+TGG | + | chr4_2:40071242-40071261 | None:intergenic | 50.0% | |
| ATCGTACCTAGGGCTGTTTG+TGG | - | chr4_2:40071241-40071260 | Msa0599800:intron | 50.0% | |
| GGATTAGACATGTCCCGTGT+CGG | - | chr4_2:40071754-40071773 | Msa0599800:intron | 50.0% | |
| GAGATATCAGGCTCTTGGAC+TGG | - | chr4_2:40072536-40072555 | Msa0599800:intron | 50.0% | |
| ! | TGGACTGGACACTAATGTGC+TGG | - | chr4_2:40072551-40072570 | Msa0599800:intron | 50.0% |
| !! | AAGTGTGGGTGCTGACACAT+TGG | - | chr4_2:40072743-40072762 | Msa0599800:intron | 50.0% |
| !! | AGTGTGGGTGCTGACACATT+GGG | - | chr4_2:40072744-40072763 | Msa0599800:intron | 50.0% |
| ACCAGTGAGACAAAGCAGTC+CGG | - | chr4_2:40072810-40072829 | Msa0599800:intron | 50.0% | |
| !! | GAAAGCGTCGAAGAAAGCTG+AGG | + | chr4_2:40072873-40072892 | None:intergenic | 50.0% |
| AAAGCAAGGTGACAGCAGCT+AGG | + | chr4_2:40072923-40072942 | None:intergenic | 50.0% | |
| CACATCACCGAAGTTTCGGA+TGG | + | chr4_2:40073436-40073455 | None:intergenic | 50.0% | |
| !! | AGGGAAGAGTGGTGGTGGTA+CGG | + | chr4_2:40068534-40068553 | None:intergenic | 55.0% |
| ACCACCACCACTCTTCCCTT+CGG | - | chr4_2:40068535-40068554 | Msa0599800:three_prime_UTR | 55.0% | |
| ! | ATCGGTACCGAAGGGAAGAG+TGG | + | chr4_2:40068545-40068564 | None:intergenic | 55.0% |
| ! | TGGGGAAGCTTCGGTTTGAC+GGG | - | chr4_2:40069442-40069461 | Msa0599800:intron | 55.0% |
| ! | TCGGTTTGACGGGAGACTCA+TGG | - | chr4_2:40069452-40069471 | Msa0599800:intron | 55.0% |
| CGGTTTGACGGGAGACTCAT+GGG | - | chr4_2:40069453-40069472 | Msa0599800:intron | 55.0% | |
| GTGCCAGTTGTGCAAGTCTC+AGG | + | chr4_2:40069771-40069790 | None:intergenic | 55.0% | |
| CTTATCCCACTACGTGGGGT+CGG | + | chr4_2:40070755-40070774 | None:intergenic | 55.0% | |
| ! | CCAAGCCTTATCCCACTACG+TGG | + | chr4_2:40070761-40070780 | None:intergenic | 55.0% |
| ! | CCACGTAGTGGGATAAGGCT+TGG | - | chr4_2:40070758-40070777 | Msa0599800:intron | 55.0% |
| ACAACCGGGAACCTGCAAAC+AGG | + | chr4_2:40071468-40071487 | None:intergenic | 55.0% | |
| CACGGGACATGTCTAATCCG+AGG | + | chr4_2:40071753-40071772 | None:intergenic | 55.0% | |
| ATACGGACACGGACATGACG+CGG | + | chr4_2:40071867-40071886 | None:intergenic | 55.0% | |
| ! | CTGGACACTAATGTGCTGGC+TGG | - | chr4_2:40072555-40072574 | Msa0599800:intron | 55.0% |
| !! | GTGCTGGCTGGAGCTAGATA+TGG | - | chr4_2:40072567-40072586 | Msa0599800:intron | 55.0% |
| !! | GGGTGCTGACACATTGGGAT+TGG | - | chr4_2:40072749-40072768 | Msa0599800:intron | 55.0% |
| ! | GCTGACACATTGGGATTGGC+TGG | - | chr4_2:40072753-40072772 | Msa0599800:intron | 55.0% |
| ACCGGACTGCTTTGTCTCAC+TGG | + | chr4_2:40072814-40072833 | None:intergenic | 55.0% | |
| GGAGCGAGGGATGGAAGAGA+AGG | + | chr4_2:40068467-40068486 | None:intergenic | 60.0% | |
| TCTTCCATCCCTCGCTCCAC+CGG | - | chr4_2:40068469-40068488 | Msa0599800:three_prime_UTR | 60.0% | |
| !! | GGTACGGTGGAGGTGTTCTG+CGG | + | chr4_2:40068518-40068537 | None:intergenic | 60.0% |
| !! | GAAGAGTGGTGGTGGTACGG+TGG | + | chr4_2:40068531-40068550 | None:intergenic | 60.0% |
| ACCGAAGGGAAGAGTGGTGG+TGG | + | chr4_2:40068539-40068558 | None:intergenic | 60.0% | |
| ! | GGTACCGAAGGGAAGAGTGG+TGG | + | chr4_2:40068542-40068561 | None:intergenic | 60.0% |
| ACTACGTGGGGTCGGCTACA+TGG | + | chr4_2:40070747-40070766 | None:intergenic | 60.0% | |
| ATGTAGCCGACCCCACGTAG+TGG | - | chr4_2:40070746-40070765 | Msa0599800:intron | 60.0% | |
| TGTAGCCGACCCCACGTAGT+GGG | - | chr4_2:40070747-40070766 | Msa0599800:intron | 60.0% | |
| ! | CGACCCCACGTAGTGGGATA+AGG | - | chr4_2:40070753-40070772 | Msa0599800:intron | 60.0% |
| ACACGACACGTGTCCGACAC+GGG | + | chr4_2:40071770-40071789 | None:intergenic | 60.0% | |
| GACACGACACGTGTCCGACA+CGG | + | chr4_2:40071771-40071790 | None:intergenic | 60.0% | |
| AGAGGGATCCGGTGGAGCGA+GGG | + | chr4_2:40068480-40068499 | None:intergenic | 65.0% | |
| !! | ACGGTGGAGGTGTTCTGCGG+CGG | + | chr4_2:40068515-40068534 | None:intergenic | 65.0% |
| !! | GAGTGGTGGTGGTACGGTGG+AGG | + | chr4_2:40068528-40068547 | None:intergenic | 65.0% |
| GGATCCGGTGGAGCGAGGGA+TGG | + | chr4_2:40068476-40068495 | None:intergenic | 70.0% | |
| GAGAGGGATCCGGTGGAGCG+AGG | + | chr4_2:40068481-40068500 | None:intergenic | 70.0% | |
| !! | GGTGGCGGGAGAGAGGGATC+CGG | + | chr4_2:40068491-40068510 | None:intergenic | 70.0% |
| !! | GTGGAGGTGTTCTGCGGCGG+CGG | + | chr4_2:40068512-40068531 | None:intergenic | 70.0% |
| GGCGGGAGAGAGGGATCCGG+TGG | + | chr4_2:40068488-40068507 | None:intergenic | 75.0% | |
| TGTTCTGCGGCGGCGGTGGC+GGG | + | chr4_2:40068505-40068524 | None:intergenic | 75.0% | |
| GTGTTCTGCGGCGGCGGTGG+CGG | + | chr4_2:40068506-40068525 | None:intergenic | 75.0% | |
| ! | GAGGTGTTCTGCGGCGGCGG+TGG | + | chr4_2:40068509-40068528 | None:intergenic | 75.0% |
| !!! | GGCGGCGGTGGCGGGAGAGA+GGG | + | chr4_2:40068497-40068516 | None:intergenic | 80.0% |
| !!! | CGGCGGCGGTGGCGGGAGAG+AGG | + | chr4_2:40068498-40068517 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 40068286 | 40073647 | 40068286 | ID=Msa0599800;Name=Msa0599800 |
| chr4_2 | mRNA | 40068286 | 40073647 | 40068286 | ID=Msa0599800-mRNA-1;Parent=Msa0599800;Name=Msa0599800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=102|1|1|1|0.75|0.6|5|423|243 |
| chr4_2 | exon | 40068286 | 40068665 | 40068286 | ID=Msa0599800-mRNA-1:exon:8708;Parent=Msa0599800-mRNA-1 |
| chr4_2 | exon | 40068787 | 40069225 | 40068787 | ID=Msa0599800-mRNA-1:exon:8707;Parent=Msa0599800-mRNA-1 |
| chr4_2 | exon | 40069307 | 40069396 | 40069307 | ID=Msa0599800-mRNA-1:exon:8706;Parent=Msa0599800-mRNA-1 |
| chr4_2 | exon | 40073134 | 40073210 | 40073134 | ID=Msa0599800-mRNA-1:exon:8705;Parent=Msa0599800-mRNA-1 |
| chr4_2 | exon | 40073377 | 40073647 | 40073377 | ID=Msa0599800-mRNA-1:exon:8704;Parent=Msa0599800-mRNA-1 |
| chr4_2 | five_prime_UTR | 40073546 | 40073647 | 40073546 | ID=Msa0599800-mRNA-1:five_prime_utr;Parent=Msa0599800-mRNA-1 |
| chr4_2 | CDS | 40073377 | 40073545 | 40073377 | ID=Msa0599800-mRNA-1:cds;Parent=Msa0599800-mRNA-1 |
| chr4_2 | CDS | 40073134 | 40073210 | 40073134 | ID=Msa0599800-mRNA-1:cds;Parent=Msa0599800-mRNA-1 |
| chr4_2 | CDS | 40069307 | 40069396 | 40069307 | ID=Msa0599800-mRNA-1:cds;Parent=Msa0599800-mRNA-1 |
| chr4_2 | CDS | 40068830 | 40069225 | 40068830 | ID=Msa0599800-mRNA-1:cds;Parent=Msa0599800-mRNA-1 |
| chr4_2 | three_prime_UTR | 40068787 | 40068829 | 40068787 | ID=Msa0599800-mRNA-1:three_prime_utr;Parent=Msa0599800-mRNA-1 |
| chr4_2 | three_prime_UTR | 40068286 | 40068665 | 40068286 | ID=Msa0599800-mRNA-1:three_prime_utr;Parent=Msa0599800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
