Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106920 | sp|Q8L3W1|VRN1_ARATH | 24.437 | 311 | 188 | 13 | 6 | 277 | 22 | 324 | 5.07e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106920 | A0A072U9K2 | 54.701 | 468 | 163 | 10 | 5 | 453 | 33 | 470 | 6.71e-147 | 442 |
| Msa0106920 | A0A072U9K2 | 72.766 | 235 | 62 | 2 | 369 | 603 | 238 | 470 | 7.05e-111 | 350 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0106920 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106920 | Msa0153600 | 0.825694 | 4.077206e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106920 | MtrunA17_Chr1g0163141 | 88.750 | 160 | 17 | 1 | 5 | 164 | 10 | 168 | 4.85e-91 | 278 |
| Msa0106920 | MtrunA17_Chr1g0163141 | 37.714 | 175 | 74 | 6 | 201 | 368 | 3 | 149 | 5.46e-15 | 73.6 |
| Msa0106920 | MtrunA17_Chr6g0476171 | 61.277 | 235 | 51 | 3 | 369 | 603 | 51 | 245 | 7.74e-89 | 275 |
| Msa0106920 | MtrunA17_Chr6g0476171 | 45.000 | 300 | 98 | 8 | 165 | 453 | 2 | 245 | 2.71e-61 | 203 |
| Msa0106920 | MtrunA17_Chr6g0476181 | 76.250 | 160 | 30 | 1 | 5 | 164 | 1 | 152 | 3.39e-77 | 242 |
| Msa0106920 | MtrunA17_Chr6g0476181 | 43.382 | 136 | 44 | 3 | 247 | 369 | 35 | 150 | 2.87e-19 | 85.5 |
| Msa0106920 | MtrunA17_Chr1g0163131 | 43.289 | 298 | 131 | 8 | 5 | 288 | 33 | 306 | 2.61e-65 | 216 |
| Msa0106920 | MtrunA17_Chr1g0163131 | 44.318 | 88 | 47 | 1 | 516 | 603 | 221 | 306 | 5.95e-15 | 76.3 |
| Msa0106920 | MtrunA17_Chr1g0162161 | 62.963 | 162 | 40 | 2 | 3 | 164 | 1 | 142 | 1.15e-61 | 201 |
| Msa0106920 | MtrunA17_Chr1g0163101 | 63.125 | 160 | 37 | 2 | 5 | 164 | 32 | 169 | 5.54e-61 | 200 |
| Msa0106920 | MtrunA17_Chr1g0163081 | 59.259 | 162 | 41 | 3 | 1 | 162 | 1 | 137 | 7.65e-52 | 174 |
| Msa0106920 | MtrunA17_Chr1g0163181 | 28.571 | 469 | 256 | 16 | 6 | 454 | 21 | 430 | 4.30e-51 | 182 |
| Msa0106920 | MtrunA17_Chr1g0163181 | 31.629 | 313 | 165 | 12 | 323 | 603 | 134 | 429 | 4.66e-32 | 129 |
| Msa0106920 | MtrunA17_Chr1g0163261 | 39.297 | 313 | 139 | 12 | 6 | 304 | 25 | 300 | 1.35e-50 | 177 |
| Msa0106920 | MtrunA17_Chr1g0163261 | 45.161 | 93 | 48 | 3 | 373 | 465 | 205 | 294 | 4.81e-15 | 76.3 |
| Msa0106920 | MtrunA17_Chr1g0163251 | 38.816 | 304 | 146 | 10 | 6 | 301 | 21 | 292 | 1.13e-48 | 174 |
| Msa0106920 | MtrunA17_Chr1g0163251 | 31.250 | 208 | 99 | 6 | 299 | 465 | 87 | 291 | 4.11e-17 | 84.0 |
| Msa0106920 | MtrunA17_Chr1g0163161 | 59.864 | 147 | 39 | 3 | 18 | 164 | 1 | 127 | 1.25e-48 | 166 |
| Msa0106920 | MtrunA17_Chr1g0163121 | 56.173 | 162 | 40 | 3 | 3 | 164 | 8 | 138 | 3.68e-48 | 165 |
| Msa0106920 | MtrunA17_Chr1g0163231 | 38.356 | 292 | 131 | 9 | 6 | 287 | 25 | 277 | 2.80e-46 | 165 |
| Msa0106920 | MtrunA17_Chr1g0163231 | 28.947 | 190 | 96 | 6 | 299 | 452 | 91 | 277 | 8.36e-11 | 63.5 |
| Msa0106920 | MtrunA17_Chr1g0163201 | 27.637 | 474 | 215 | 14 | 6 | 452 | 19 | 391 | 9.77e-43 | 158 |
| Msa0106920 | MtrunA17_Chr1g0163201 | 33.086 | 269 | 126 | 8 | 335 | 603 | 178 | 392 | 2.77e-31 | 126 |
| Msa0106920 | MtrunA17_Chr1g0171611 | 34.021 | 291 | 133 | 9 | 6 | 287 | 25 | 265 | 3.93e-36 | 137 |
| Msa0106920 | MtrunA17_Chr1g0171611 | 38.462 | 117 | 60 | 4 | 338 | 452 | 159 | 265 | 2.18e-11 | 65.1 |
| Msa0106920 | MtrunA17_Chr1g0208771 | 25.216 | 464 | 318 | 13 | 3 | 453 | 10 | 457 | 2.00e-34 | 136 |
| Msa0106920 | MtrunA17_Chr1g0163111 | 37.500 | 232 | 108 | 10 | 373 | 603 | 33 | 228 | 4.07e-34 | 129 |
| Msa0106920 | MtrunA17_Chr1g0163111 | 27.675 | 271 | 137 | 7 | 194 | 456 | 12 | 231 | 3.99e-23 | 98.6 |
| Msa0106920 | MtrunA17_Chr1g0163151 | 33.617 | 235 | 103 | 7 | 373 | 603 | 36 | 221 | 1.19e-30 | 119 |
| Msa0106920 | MtrunA17_Chr1g0163151 | 38.281 | 128 | 64 | 4 | 173 | 294 | 1 | 119 | 6.94e-16 | 77.0 |
| Msa0106920 | MtrunA17_Chr7g0233561 | 29.667 | 300 | 178 | 7 | 6 | 291 | 34 | 314 | 1.73e-26 | 110 |
| Msa0106920 | MtrunA17_Chr8g0390841 | 23.887 | 494 | 299 | 15 | 6 | 453 | 55 | 517 | 1.75e-25 | 110 |
| Msa0106920 | MtrunA17_Chr1g0163091 | 44.604 | 139 | 61 | 5 | 173 | 302 | 1 | 132 | 2.28e-25 | 102 |
| Msa0106920 | MtrunA17_Chr1g0163091 | 49.474 | 95 | 45 | 3 | 371 | 465 | 39 | 130 | 3.24e-21 | 90.9 |
| Msa0106920 | MtrunA17_Chr3g0131891 | 30.033 | 303 | 165 | 12 | 5 | 291 | 34 | 305 | 4.50e-25 | 106 |
| Msa0106920 | MtrunA17_Chr3g0103171 | 29.530 | 298 | 167 | 12 | 1 | 288 | 1 | 265 | 4.85e-25 | 104 |
| Msa0106920 | MtrunA17_Chr7g0233531 | 29.667 | 300 | 163 | 9 | 5 | 291 | 1 | 265 | 9.74e-25 | 104 |
| Msa0106920 | MtrunA17_Chr1g0163241 | 38.776 | 147 | 87 | 2 | 1 | 146 | 18 | 162 | 2.14e-24 | 100 |
| Msa0106920 | MtrunA17_Chr4g0067431 | 25.962 | 312 | 197 | 11 | 6 | 301 | 31 | 324 | 2.71e-24 | 103 |
| Msa0106920 | MtrunA17_Chr1g0162151 | 48.246 | 114 | 51 | 3 | 197 | 304 | 23 | 134 | 3.06e-24 | 101 |
| Msa0106920 | MtrunA17_Chr1g0162151 | 31.250 | 240 | 89 | 8 | 369 | 602 | 37 | 206 | 7.13e-23 | 97.4 |
| Msa0106920 | MtrunA17_Chr7g0233541 | 27.333 | 300 | 187 | 7 | 5 | 291 | 1 | 282 | 9.38e-24 | 102 |
| Msa0106920 | MtrunA17_Chr1g0163071 | 24.595 | 309 | 211 | 7 | 5 | 301 | 1 | 299 | 1.95e-21 | 95.5 |
| Msa0106920 | MtrunA17_Chr1g0163221 | 27.036 | 307 | 183 | 9 | 6 | 301 | 27 | 303 | 2.85e-21 | 95.9 |
| Msa0106920 | MtrunA17_Chr7g0233521 | 27.273 | 308 | 160 | 10 | 5 | 291 | 1 | 265 | 1.03e-20 | 92.8 |
| Msa0106920 | MtrunA17_Chr3g0103181 | 26.573 | 286 | 169 | 10 | 6 | 285 | 26 | 276 | 2.04e-18 | 85.9 |
| Msa0106920 | MtrunA17_Chr1g0163191 | 40.404 | 99 | 57 | 2 | 6 | 102 | 21 | 119 | 8.85e-18 | 80.9 |
| Msa0106920 | MtrunA17_Chr7g0233571 | 31.754 | 211 | 125 | 7 | 5 | 212 | 25 | 219 | 1.38e-16 | 79.3 |
| Msa0106920 | MtrunA17_Chr5g0419201 | 32.847 | 137 | 86 | 4 | 5 | 135 | 31 | 167 | 1.86e-16 | 78.2 |
| Msa0106920 | MtrunA17_Chr3g0103151 | 36.885 | 122 | 66 | 4 | 6 | 124 | 26 | 139 | 1.47e-15 | 74.7 |
| Msa0106920 | MtrunA17_Chr3g0103201 | 30.328 | 244 | 133 | 11 | 48 | 285 | 5 | 217 | 2.13e-15 | 75.9 |
| Msa0106920 | MtrunA17_Chr3g0103191 | 40.164 | 122 | 62 | 5 | 6 | 124 | 26 | 139 | 6.87e-15 | 75.1 |
| Msa0106920 | MtrunA17_Chr5g0419211 | 36.170 | 94 | 59 | 1 | 209 | 302 | 11 | 103 | 4.04e-14 | 68.9 |
| Msa0106920 | MtrunA17_Chr5g0419211 | 37.500 | 96 | 54 | 2 | 372 | 465 | 10 | 101 | 7.89e-14 | 68.2 |
| Msa0106920 | MtrunA17_Chr6g0467351 | 38.384 | 99 | 56 | 4 | 6 | 99 | 31 | 129 | 5.71e-13 | 68.9 |
| Msa0106920 | MtrunA17_Chr1g0154191 | 22.977 | 309 | 195 | 12 | 6 | 275 | 38 | 342 | 5.05e-12 | 67.8 |
| Msa0106920 | MtrunA17_Chr1g0163061 | 42.857 | 84 | 44 | 2 | 6 | 85 | 31 | 114 | 5.32e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106920 | AT3G18990.1 | 24.437 | 311 | 188 | 13 | 6 | 277 | 22 | 324 | 5.15e-16 | 80.1 |
| Msa0106920 | AT3G18990.2 | 24.437 | 311 | 188 | 13 | 6 | 277 | 22 | 324 | 8.97e-16 | 79.7 |
| Msa0106920 | AT4G33280.1 | 25.914 | 301 | 186 | 13 | 5 | 288 | 38 | 318 | 1.78e-13 | 72.4 |
Find 95 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGACCCATTTGGAAGTTTA+AGG | 0.148962 | 1_3:-16725415 | None:intergenic |
| ATGGAATATGCGGGCAATTT+TGG | 0.164513 | 1_3:+16729689 | Msa0106920:CDS |
| TCCCATTCGAAAACTTATTC+TGG | 0.233504 | 1_3:-16728022 | None:intergenic |
| TATAATGAACATCTCGACTA+TGG | 0.280428 | 1_3:+16730091 | Msa0106920:CDS |
| TTTGGAAGTTTAAGGGATAT+TGG | 0.281020 | 1_3:-16725407 | None:intergenic |
| AAGAAGCATGTTATATTTAG+TGG | 0.292603 | 1_3:+16730016 | Msa0106920:CDS |
| TGCAATGCAGTGATGGTATT+TGG | 0.296187 | 1_3:+16725456 | Msa0106920:CDS |
| ATGGTATTTGGCTTCAAAAT+TGG | 0.298035 | 1_3:+16725468 | Msa0106920:CDS |
| TACTGCAGATTCTGTAAGTC+TGG | 0.316891 | 1_3:+16729839 | Msa0106920:intron |
| TATTCTTTCGAAAAGCAATT+AGG | 0.323587 | 1_3:-16726663 | None:intergenic |
| AGTTTAAGGGATATTGGATT+TGG | 0.337634 | 1_3:-16725401 | None:intergenic |
| CTCCGGGCCCGGTTCCTTTG+TGG | 0.341042 | 1_3:-16728154 | None:intergenic |
| TGAAACAGATGATACCTAAA+TGG | 0.345354 | 1_3:+16727896 | Msa0106920:intron |
| TTGATTTGTCTTGGACTCCT+TGG | 0.347774 | 1_3:-16729646 | None:intergenic |
| AATCTGACCCTCCTTTGTAT+TGG | 0.356917 | 1_3:-16725535 | None:intergenic |
| GGCATGGTTCCTTCGTGGTT+GGG | 0.394000 | 1_3:-16726899 | None:intergenic |
| AGACCCATTTGGAAGTTTAA+GGG | 0.398720 | 1_3:-16725414 | None:intergenic |
| CATCTCAACCACAAAGGAAC+CGG | 0.404419 | 1_3:+16728146 | Msa0106920:CDS |
| GACAACACCCGTAAAAGATA+TGG | 0.404989 | 1_3:+16729670 | Msa0106920:CDS |
| GTGTTGTCTTTGATTTGTCT+TGG | 0.415804 | 1_3:-16729655 | None:intergenic |
| GGGCATGGTTCCTTCGTGGT+TGG | 0.425016 | 1_3:-16726900 | None:intergenic |
| TACCTCTCTACAAAATTTCT+CGG | 0.425845 | 1_3:-16725365 | None:intergenic |
| ATAATACCTTGAAACTGCTC+AGG | 0.432958 | 1_3:-16726921 | None:intergenic |
| CCTTGAAACTTCTCCGGGCC+CGG | 0.437013 | 1_3:-16728165 | None:intergenic |
| ATTCAGTGGAGTTGAGAGTA+GGG | 0.448522 | 1_3:+16730041 | Msa0106920:CDS |
| ATAATAATTGTGAATGAAAG+TGG | 0.448746 | 1_3:-16726873 | None:intergenic |
| GGTCTGCGTGCAAAATGAAT+TGG | 0.448911 | 1_3:+16725432 | Msa0106920:CDS |
| ATATCCCTTAAACTTCCAAA+TGG | 0.449227 | 1_3:+16725410 | Msa0106920:CDS |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_3:+16726718 | Msa0106920:CDS |
| GCAATACCTTGAAACTTCTC+CGG | 0.461040 | 1_3:-16728171 | None:intergenic |
| AACCACAAAGGAACCGGGCC+CGG | 0.463990 | 1_3:+16728152 | Msa0106920:CDS |
| CTCAGGGCATGGTTCCTTCG+TGG | 0.465138 | 1_3:-16726904 | None:intergenic |
| TGCTTCTTCAACAGCTCACT+TGG | 0.474225 | 1_3:-16730001 | None:intergenic |
| AAGGAACATGAGTTGAAAGT+TGG | 0.478819 | 1_3:+16726816 | Msa0106920:CDS |
| GGGTTTACATGAGATGTTCA+AGG | 0.483513 | 1_3:+16729860 | Msa0106920:CDS |
| TGAGAGTAGGGGAAGGAACA+TGG | 0.483751 | 1_3:+16730053 | Msa0106920:CDS |
| GTCTGCGTGCAAAATGAATT+GGG | 0.489112 | 1_3:+16725433 | Msa0106920:CDS |
| CCATGCCCTGAGCAGTTTCA+AGG | 0.498811 | 1_3:+16726915 | Msa0106920:CDS |
| CATTAAACTTTCGTAAAAGC+AGG | 0.501843 | 1_3:+16726754 | Msa0106920:CDS |
| GACTATGGGTGGTTCACTAA+AGG | 0.507216 | 1_3:+16730106 | Msa0106920:CDS |
| AGTGAAACTAGGACTCTCAT+TGG | 0.512039 | 1_3:-16726203 | None:intergenic |
| AGAGATTGCAAAGTAAAGAC+TGG | 0.515563 | 1_3:+16730145 | Msa0106920:CDS |
| ACTGCAGATTCTGTAAGTCT+GGG | 0.516733 | 1_3:+16729840 | Msa0106920:intron |
| TATTCAGTGGAGTTGAGAGT+AGG | 0.518002 | 1_3:+16730040 | Msa0106920:CDS |
| TATCCCTTAAACTTCCAAAT+GGG | 0.519149 | 1_3:+16725411 | Msa0106920:CDS |
| TATATTTAGTGGATATTCAG+TGG | 0.520038 | 1_3:+16730027 | Msa0106920:CDS |
| TTTGGCTTCAAAATTGGAAG+AGG | 0.520115 | 1_3:+16725474 | Msa0106920:CDS |
| TAATGGAAACACAGGAGGCA+TGG | 0.520474 | 1_3:+16726123 | Msa0106920:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_3:+16730195 | Msa0106920:CDS |
| CCGGGCCCGGAGAAGTTTCA+AGG | 0.523708 | 1_3:+16728165 | Msa0106920:CDS |
| TTCAGTGGAGTTGAGAGTAG+GGG | 0.529294 | 1_3:+16730042 | Msa0106920:CDS |
| CAATACCTTGAAACTTCTCC+GGG | 0.531230 | 1_3:-16728170 | None:intergenic |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_3:+16726708 | Msa0106920:CDS |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_3:+16727955 | Msa0106920:CDS |
| AATGGAAACACAGGAGGCAT+GGG | 0.543418 | 1_3:+16726124 | Msa0106920:CDS |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1_3:+16726684 | Msa0106920:CDS |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1_3:+16727931 | Msa0106920:CDS |
| GTGAAACTAGGACTCTCATT+GGG | 0.547777 | 1_3:-16726202 | None:intergenic |
| ATAATGAACATCTCGACTAT+GGG | 0.547880 | 1_3:+16730092 | Msa0106920:CDS |
| CCTTGAAACTGCTCAGGGCA+TGG | 0.548538 | 1_3:-16726915 | None:intergenic |
| ATGGGTGGTTCACTAAAGGC+TGG | 0.558556 | 1_3:+16730110 | Msa0106920:CDS |
| ACTACTGCTGCTACACCTCA+AGG | 0.560864 | 1_3:+16725761 | Msa0106920:CDS |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.562489 | 1_3:+16726719 | Msa0106920:CDS |
| ATAGCAATCGTGAATGAAAG+TGG | 0.565935 | 1_3:-16728123 | None:intergenic |
| GATAATTTGACAGTGAAACT+AGG | 0.566923 | 1_3:-16726214 | None:intergenic |
| AATTAGAAGTGTTGGTGAGG+AGG | 0.570785 | 1_3:+16727963 | Msa0106920:CDS |
| AAAATTGGAAGAGGTTTGCA+TGG | 0.571811 | 1_3:+16725483 | Msa0106920:CDS |
| GTAAAAGATATGGAATATGC+GGG | 0.574921 | 1_3:+16729680 | Msa0106920:CDS |
| ATCTCAACCACAAAGGAACC+GGG | 0.574935 | 1_3:+16728147 | Msa0106920:CDS |
| TTGTGAATGTTACTCCCTTG+AGG | 0.576438 | 1_3:-16725776 | None:intergenic |
| AACAATTAGAAGTGTTGGTG+AGG | 0.594775 | 1_3:+16727960 | Msa0106920:CDS |
| GCAGAGGCTAATGGAAACAC+AGG | 0.596384 | 1_3:+16726115 | Msa0106920:intron |
| CGTAAAAGATATGGAATATG+CGG | 0.600766 | 1_3:+16729679 | Msa0106920:CDS |
| AACAATTAGAAGTGTTGGTG+AGG | 0.601806 | 1_3:+16726713 | Msa0106920:CDS |
| TTTGCATGGTCGCTCCGATG+TGG | 0.602338 | 1_3:+16725497 | Msa0106920:CDS |
| AATTGGGTGCAATGCAGTGA+TGG | 0.617555 | 1_3:+16725449 | Msa0106920:CDS |
| TATTCAAGTATGAGATGCAA+CGG | 0.618523 | 1_3:+16725599 | Msa0106920:CDS |
| TAATACCTTGAAACTGCTCA+GGG | 0.625384 | 1_3:-16726920 | None:intergenic |
| GTGTTGGTGAGGACAGGGCA+TGG | 0.626789 | 1_3:+16726724 | Msa0106920:CDS |
| GGAAGGAACATGGTTTGTAG+AGG | 0.629163 | 1_3:+16730063 | Msa0106920:CDS |
| ATGAACATCTCGACTATGGG+TGG | 0.635276 | 1_3:+16730095 | Msa0106920:CDS |
| CGGGAACATAACTTGCAAGT+CGG | 0.642213 | 1_3:+16728066 | Msa0106920:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1_3:+16726689 | Msa0106920:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1_3:+16727936 | Msa0106920:CDS |
| GTGGAGTTGAGAGTAGGGGA+AGG | 0.647557 | 1_3:+16730046 | Msa0106920:CDS |
| TGCTATCATCTCAACCACAA+AGG | 0.651551 | 1_3:+16728140 | Msa0106920:CDS |
| CTACTGCTGCTACACCTCAA+GGG | 0.653810 | 1_3:+16725762 | Msa0106920:CDS |
| TATTATTATCCCAACCACGA+AGG | 0.659077 | 1_3:+16726890 | Msa0106920:CDS |
| TTATCACCTTCAACATGACA+TGG | 0.659419 | 1_3:-16726238 | None:intergenic |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1_3:+16726685 | Msa0106920:CDS |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1_3:+16727932 | Msa0106920:CDS |
| TGGACTTGTGCAGAAAACCA+AGG | 0.671628 | 1_3:+16729629 | Msa0106920:intron |
| AAACTAAAAGATCTCCACAT+CGG | 0.700040 | 1_3:-16725511 | None:intergenic |
| GAGGCTAATGGAAACACAGG+AGG | 0.702704 | 1_3:+16726118 | Msa0106920:intron |
| TTGGTGAGGAGGATAGAACA+TGG | 0.724838 | 1_3:+16727974 | Msa0106920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATATACAAATTTTTCA+AGG | + | chr1_3:16729406-16729425 | Msa0106920:intron | 10.0% |
| !! | AAAATATACATAAATAGAGT+GGG | - | chr1_3:16727233-16727252 | None:intergenic | 15.0% |
| !! | AAAAATATACATAAATAGAG+TGG | - | chr1_3:16727234-16727253 | None:intergenic | 15.0% |
| !!! | ATTAATGAGAAAAAAAGTAT+AGG | - | chr1_3:16727533-16727552 | None:intergenic | 15.0% |
| !!! | CAAATGTGTAAAATATTTTA+AGG | + | chr1_3:16728305-16728324 | Msa0106920:intron | 15.0% |
| !!! | ATATTTTAAGGTTTAAATCT+TGG | + | chr1_3:16728317-16728336 | Msa0106920:intron | 15.0% |
| !! | TGCTTGTAATAAATTAATTA+AGG | - | chr1_3:16728841-16728860 | None:intergenic | 15.0% |
| !!! | CTATTTTATTTTACAGTTAT+TGG | - | chr1_3:16729223-16729242 | None:intergenic | 15.0% |
| !! | AAAAAGAGAATCAATTCAAA+TGG | + | chr1_3:16725731-16725750 | Msa0106920:CDS | 20.0% |
| !! | TAAACAGATGAATGAATAAA+AGG | - | chr1_3:16725859-16725878 | None:intergenic | 20.0% |
| !! | TTATTCATTCATCTGTTTAT+AGG | + | chr1_3:16725860-16725879 | Msa0106920:intron | 20.0% |
| !!! | AATTTGTATGGATTAAAAAG+TGG | - | chr1_3:16725946-16725965 | None:intergenic | 20.0% |
| !!! | GTATACTTTTGTAATTTGTA+TGG | - | chr1_3:16725958-16725977 | None:intergenic | 20.0% |
| !! | TATTACAGAAAAAGTAGTAT+AGG | - | chr1_3:16726279-16726298 | None:intergenic | 20.0% |
| !! | TATTAACAAGAGAAACATTT+GGG | - | chr1_3:16726381-16726400 | None:intergenic | 20.0% |
| !! | ACTAATTGAAAACATATTCA+AGG | + | chr1_3:16726419-16726438 | Msa0106920:intron | 20.0% |
| !! | ATAATAATTGTGAATGAAAG+TGG | - | chr1_3:16726876-16726895 | None:intergenic | 20.0% |
| !!! | TTGATTTTCTTTTTCTTGAT+GGG | - | chr1_3:16727074-16727093 | None:intergenic | 20.0% |
| !!! | ATTGATTTTCTTTTTCTTGA+TGG | - | chr1_3:16727075-16727094 | None:intergenic | 20.0% |
| !!! | AATAAACACATTGATTTTGT+GGG | - | chr1_3:16727136-16727155 | None:intergenic | 20.0% |
| !!! | AAATAAACACATTGATTTTG+TGG | - | chr1_3:16727137-16727156 | None:intergenic | 20.0% |
| !!! | TTTTGTATGGATTAAAAAGT+GGG | - | chr1_3:16727190-16727209 | None:intergenic | 20.0% |
| !! | TACTAACAAAAACATATTCA+AGG | + | chr1_3:16727672-16727691 | Msa0106920:intron | 20.0% |
| !!! | TAACAAAAGAGAAAAAGTAT+AGG | + | chr1_3:16727724-16727743 | Msa0106920:intron | 20.0% |
| !!! | TATTCTTTTGAAAACCATTT+AGG | - | chr1_3:16727913-16727932 | None:intergenic | 20.0% |
| !!! | GAGAAAGAAGTTTATTTTAA+TGG | - | chr1_3:16728815-16728834 | None:intergenic | 20.0% |
| !!! | GATTTTAGTCATTCTAATAA+TGG | + | chr1_3:16729330-16729349 | Msa0106920:intron | 20.0% |
| !!! | CCAAGATTAATTTTTATACA+CGG | + | chr1_3:16729465-16729484 | Msa0106920:intron | 20.0% |
| !! | AACAAAGAAAACATAGTTTA+AGG | - | chr1_3:16729813-16729832 | None:intergenic | 20.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | + | chr1_3:16725524-16725543 | Msa0106920:CDS | 25.0% |
| !!! | ATTGATTCTCTTTTTCTTGA+GGG | - | chr1_3:16725726-16725745 | None:intergenic | 25.0% |
| !!! | AATTGATTCTCTTTTTCTTG+AGG | - | chr1_3:16725727-16725746 | None:intergenic | 25.0% |
| !! | CAAAATTTGAGATGAACTAA+GGG | - | chr1_3:16725907-16725926 | None:intergenic | 25.0% |
| ! | AAAGTGTGCATAAATAAAGT+GGG | - | chr1_3:16725996-16726015 | None:intergenic | 25.0% |
| !! | AAAAGTGTGCATAAATAAAG+TGG | - | chr1_3:16725997-16726016 | None:intergenic | 25.0% |
| !! | AACTATTTTCAGCATTTGAA+AGG | - | chr1_3:16726084-16726103 | None:intergenic | 25.0% |
| !!! | TAGTTTTTAAAGTTTTGCAG+AGG | + | chr1_3:16726099-16726118 | Msa0106920:intron | 25.0% |
| ! | ATTAACAAGAGAAACATTTG+GGG | - | chr1_3:16726380-16726399 | None:intergenic | 25.0% |
| ! | CTATTAACAAGAGAAACATT+TGG | - | chr1_3:16726382-16726401 | None:intergenic | 25.0% |
| ! | TATTCTTTCGAAAAGCAATT+AGG | - | chr1_3:16726666-16726685 | None:intergenic | 25.0% |
| !! | TTATTATTTTCATCGTCACT+GGG | - | chr1_3:16727047-16727066 | None:intergenic | 25.0% |
| !! | TTTATTATTTTCATCGTCAC+TGG | - | chr1_3:16727048-16727067 | None:intergenic | 25.0% |
| !! | TGATTTTCTTTTTCTTGATG+GGG | - | chr1_3:16727073-16727092 | None:intergenic | 25.0% |
| !!! | ATAAACACATTGATTTTGTG+GGG | - | chr1_3:16727135-16727154 | None:intergenic | 25.0% |
| !!! | CTTTTGTATGGATTAAAAAG+TGG | - | chr1_3:16727191-16727210 | None:intergenic | 25.0% |
| !! | TTAAAACATGTGCTTTTGTA+TGG | - | chr1_3:16727203-16727222 | None:intergenic | 25.0% |
| !! | AAATTATTTTCAGCACTTGA+AGG | - | chr1_3:16727339-16727358 | None:intergenic | 25.0% |
| ! | AAATGCACAAAAACTAAAGA+TGG | + | chr1_3:16727405-16727424 | Msa0106920:intron | 25.0% |
| ! | AATGCACAAAAACTAAAGAT+GGG | + | chr1_3:16727406-16727425 | Msa0106920:intron | 25.0% |
| ! | CTATTATCAAATGAGACATT+TGG | - | chr1_3:16727636-16727655 | None:intergenic | 25.0% |
| ! | AATTTGATACATTTAAGCAG+TGG | + | chr1_3:16727815-16727834 | Msa0106920:intron | 25.0% |
| !! | TTTGATTGATTGTAGTTTGT+TGG | - | chr1_3:16728289-16728308 | None:intergenic | 25.0% |
| ! | ATGTTAATGTTACTGTCATT+AGG | + | chr1_3:16728435-16728454 | Msa0106920:intron | 25.0% |
| ! | TGTTAATGTTACTGTCATTA+GGG | + | chr1_3:16728436-16728455 | Msa0106920:intron | 25.0% |
| !!! | ATTGTCATGTTTACCTTTTT+TGG | + | chr1_3:16728769-16728788 | Msa0106920:intron | 25.0% |
| !! | ATGAGATTTTATGACAGTAA+GGG | - | chr1_3:16729156-16729175 | None:intergenic | 25.0% |
| ! | TTAAACACACTATCATCTAT+CGG | - | chr1_3:16729265-16729284 | None:intergenic | 25.0% |
| !! | ATAGATGATAGTGTGTTTAA+GGG | + | chr1_3:16729265-16729284 | Msa0106920:intron | 25.0% |
| ! | CCGTGTATAAAAATTAATCT+TGG | - | chr1_3:16729468-16729487 | None:intergenic | 25.0% |
| !! | TTTTATAACATCATCAGACA+AGG | + | chr1_3:16729884-16729903 | Msa0106920:CDS | 25.0% |
| ! | TTTGTTCATATATATGCAGT+TGG | + | chr1_3:16729970-16729989 | Msa0106920:intron | 25.0% |
| !! | AAGAAGCATGTTATATTTAG+TGG | + | chr1_3:16730016-16730035 | Msa0106920:CDS | 25.0% |
| !! | TATATTTAGTGGATATTCAG+TGG | + | chr1_3:16730027-16730046 | Msa0106920:CDS | 25.0% |
| TACCTCTCTACAAAATTTCT+CGG | - | chr1_3:16725368-16725387 | None:intergenic | 30.0% | |
| !! | GAAATTTTGTAGAGAGGTAT+TGG | + | chr1_3:16725369-16725388 | Msa0106920:CDS | 30.0% |
| AGTTTAAGGGATATTGGATT+TGG | - | chr1_3:16725404-16725423 | None:intergenic | 30.0% | |
| TTTGGAAGTTTAAGGGATAT+TGG | - | chr1_3:16725410-16725429 | None:intergenic | 30.0% | |
| ATATCCCTTAAACTTCCAAA+TGG | + | chr1_3:16725410-16725429 | Msa0106920:CDS | 30.0% | |
| TATCCCTTAAACTTCCAAAT+GGG | + | chr1_3:16725411-16725430 | Msa0106920:CDS | 30.0% | |
| ! | ATGGTATTTGGCTTCAAAAT+TGG | + | chr1_3:16725468-16725487 | Msa0106920:CDS | 30.0% |
| AAACTAAAAGATCTCCACAT+CGG | - | chr1_3:16725514-16725533 | None:intergenic | 30.0% | |
| !! | TTAGTTTTCCAATACAAAGG+AGG | + | chr1_3:16725527-16725546 | Msa0106920:CDS | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | + | chr1_3:16725528-16725547 | Msa0106920:CDS | 30.0% |
| TATTCAAGTATGAGATGCAA+CGG | + | chr1_3:16725599-16725618 | Msa0106920:CDS | 30.0% | |
| !! | TTAGTATTTTCAGTGTCACT+AGG | - | chr1_3:16725698-16725717 | None:intergenic | 30.0% |
| ! | TTGATTCTCTTTTTCTTGAG+GGG | - | chr1_3:16725725-16725744 | None:intergenic | 30.0% |
| ! | CTTACCTGAAACTTTTTGTT+GGG | - | chr1_3:16725825-16725844 | None:intergenic | 30.0% |
| ! | ACTTACCTGAAACTTTTTGT+TGG | - | chr1_3:16725826-16725845 | None:intergenic | 30.0% |
| ! | CCAAAATTTGAGATGAACTA+AGG | - | chr1_3:16725908-16725927 | None:intergenic | 30.0% |
| ! | CCTTAGTTCATCTCAAATTT+TGG | + | chr1_3:16725905-16725924 | Msa0106920:intron | 30.0% |
| GATAATTTGACAGTGAAACT+AGG | - | chr1_3:16726217-16726236 | None:intergenic | 30.0% | |
| TGTTGAAGGTGATAATAGAT+TGG | + | chr1_3:16726246-16726265 | Msa0106920:intron | 30.0% | |
| !! | AGAGGCTTTCATTTTTCTAT+AGG | + | chr1_3:16726324-16726343 | Msa0106920:intron | 30.0% |
| TACATGAATGAGTTATTGCA+AGG | + | chr1_3:16726684-16726703 | Msa0106920:CDS | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | + | chr1_3:16726685-16726704 | Msa0106920:CDS | 30.0% | |
| CATTAAACTTTCGTAAAAGC+AGG | + | chr1_3:16726754-16726773 | Msa0106920:CDS | 30.0% | |
| !!! | AAAAGCACATGTTTTAATCC+TGG | + | chr1_3:16727206-16727225 | Msa0106920:intron | 30.0% |
| ATAATATGAGAGTGAAGCTA+GGG | - | chr1_3:16727470-16727489 | None:intergenic | 30.0% | |
| AATAATATGAGAGTGAAGCT+AGG | - | chr1_3:16727471-16727490 | None:intergenic | 30.0% | |
| TTATTGCCATATCATGTTGA+AGG | + | chr1_3:16727486-16727505 | Msa0106920:intron | 30.0% | |
| TTATCACCTTCAACATGATA+TGG | - | chr1_3:16727495-16727514 | None:intergenic | 30.0% | |
| TGTTGAAGGTGATAATAGAT+TGG | + | chr1_3:16726246-16726265 | Msa0106920:intron | 30.0% | |
| ACTATACGAACTGATTGTAT+TGG | + | chr1_3:16727593-16727612 | Msa0106920:intron | 30.0% | |
| TTAACTATATGTACTGTGCA+AGG | - | chr1_3:16727851-16727870 | None:intergenic | 30.0% | |
| ATTTAGGTATCATCTGTTTC+AGG | - | chr1_3:16727897-16727916 | None:intergenic | 30.0% | |
| TGAAACAGATGATACCTAAA+TGG | + | chr1_3:16727896-16727915 | Msa0106920:intron | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | + | chr1_3:16726684-16726703 | Msa0106920:CDS | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | + | chr1_3:16726685-16726704 | Msa0106920:CDS | 30.0% | |
| ! | ATCCAGAATAAGTTTTCGAA+TGG | + | chr1_3:16728020-16728039 | Msa0106920:CDS | 30.0% |
| ! | TCCAGAATAAGTTTTCGAAT+GGG | + | chr1_3:16728021-16728040 | Msa0106920:CDS | 30.0% |
| AACGCAATAAAATAGAGCTT+GGG | - | chr1_3:16728403-16728422 | None:intergenic | 30.0% | |
| ! | AGTATTTGTTACGGTTATGT+CGG | - | chr1_3:16728492-16728511 | None:intergenic | 30.0% |
| ! | CGTTGAACAAGTATTTGTTA+CGG | - | chr1_3:16728501-16728520 | None:intergenic | 30.0% |
| CGTAACAAATACTTGTTCAA+CGG | + | chr1_3:16728499-16728518 | Msa0106920:intron | 30.0% | |
| AAACAACAGTAATAAGTGGA+CGG | - | chr1_3:16728628-16728647 | None:intergenic | 30.0% | |
| ACACAAACAACAGTAATAAG+TGG | - | chr1_3:16728632-16728651 | None:intergenic | 30.0% | |
| GAGATATGAAAAGCCAAAAA+AGG | - | chr1_3:16728785-16728804 | None:intergenic | 30.0% | |
| AGAGAGAAGAAACAATTACA+GGG | + | chr1_3:16728893-16728912 | Msa0106920:intron | 30.0% | |
| ! | TGAGATTTTATGACAGTAAG+GGG | - | chr1_3:16729155-16729174 | None:intergenic | 30.0% |
| ! | CATGAGATTTTATGACAGTA+AGG | - | chr1_3:16729157-16729176 | None:intergenic | 30.0% |
| GTCATAAAATCTCATGATGA+AGG | + | chr1_3:16729161-16729180 | Msa0106920:intron | 30.0% | |
| AATCTCATGATGAAGGATAA+TGG | + | chr1_3:16729168-16729187 | Msa0106920:intron | 30.0% | |
| ! | GATAGATGATAGTGTGTTTA+AGG | + | chr1_3:16729264-16729283 | Msa0106920:intron | 30.0% |
| ! | GCATATTCCATATCTTTTAC+GGG | - | chr1_3:16729680-16729699 | None:intergenic | 30.0% |
| ! | CGCATATTCCATATCTTTTA+CGG | - | chr1_3:16729681-16729700 | None:intergenic | 30.0% |
| CGTAAAAGATATGGAATATG+CGG | + | chr1_3:16729679-16729698 | Msa0106920:CDS | 30.0% | |
| GTAAAAGATATGGAATATGC+GGG | + | chr1_3:16729680-16729699 | Msa0106920:CDS | 30.0% | |
| !! | ATTTTGGAGATGGAATTTCA+AGG | + | chr1_3:16729705-16729724 | Msa0106920:CDS | 30.0% |
| !! | CACAAAAACACATGGTTTTA+GGG | + | chr1_3:16729733-16729752 | Msa0106920:CDS | 30.0% |
| !!! | ACAAAAACACATGGTTTTAG+GGG | + | chr1_3:16729734-16729753 | Msa0106920:CDS | 30.0% |
| TATAATGAACATCTCGACTA+TGG | + | chr1_3:16730091-16730110 | Msa0106920:CDS | 30.0% | |
| ATAATGAACATCTCGACTAT+GGG | + | chr1_3:16730092-16730111 | Msa0106920:CDS | 30.0% | |
| ! | TTCCGAGAAATTTTGTAGAG+AGG | + | chr1_3:16725363-16725382 | Msa0106920:CDS | 35.0% |
| AGACCCATTTGGAAGTTTAA+GGG | - | chr1_3:16725417-16725436 | None:intergenic | 35.0% | |
| ! | TTTGGCTTCAAAATTGGAAG+AGG | + | chr1_3:16725474-16725493 | Msa0106920:CDS | 35.0% |
| AAAATTGGAAGAGGTTTGCA+TGG | + | chr1_3:16725483-16725502 | Msa0106920:CDS | 35.0% | |
| ! | TAAAGTTTTGCAGAGGCTAA+TGG | + | chr1_3:16726106-16726125 | Msa0106920:intron | 35.0% |
| TTATCACCTTCAACATGACA+TGG | - | chr1_3:16726241-16726260 | None:intergenic | 35.0% | |
| AACTAGCAGAAGAGACATTT+AGG | + | chr1_3:16726525-16726544 | Msa0106920:intron | 35.0% | |
| ! | AATTAGGTATCGTCTGTTTC+AGG | - | chr1_3:16726650-16726669 | None:intergenic | 35.0% |
| ! | AAGGCAACAATTAGAAGTGT+TGG | + | chr1_3:16726708-16726727 | Msa0106920:CDS | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | + | chr1_3:16726713-16726732 | Msa0106920:CDS | 35.0% |
| !! | TGGTTGGAAGTCATTTTCAA+AGG | + | chr1_3:16726797-16726816 | Msa0106920:CDS | 35.0% |
| ! | AAGGAACATGAGTTGAAAGT+TGG | + | chr1_3:16726816-16726835 | Msa0106920:CDS | 35.0% |
| TATTATTATCCCAACCACGA+AGG | + | chr1_3:16726890-16726909 | Msa0106920:CDS | 35.0% | |
| TAATACCTTGAAACTGCTCA+GGG | - | chr1_3:16726923-16726942 | None:intergenic | 35.0% | |
| ATAATACCTTGAAACTGCTC+AGG | - | chr1_3:16726924-16726943 | None:intergenic | 35.0% | |
| AACTAGCAGAAGAGACATTT+AGG | + | chr1_3:16726525-16726544 | Msa0106920:intron | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | + | chr1_3:16726708-16726727 | Msa0106920:CDS | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | + | chr1_3:16726713-16726732 | Msa0106920:CDS | 35.0% |
| TCCCATTCGAAAACTTATTC+TGG | - | chr1_3:16728025-16728044 | None:intergenic | 35.0% | |
| ! | ATAAGTTTTCGAATGGGAAG+TGG | + | chr1_3:16728027-16728046 | Msa0106920:CDS | 35.0% |
| ATAGCAATCGTGAATGAAAG+TGG | - | chr1_3:16728126-16728145 | None:intergenic | 35.0% | |
| ACGCAATAAAATAGAGCTTG+GGG | - | chr1_3:16728402-16728421 | None:intergenic | 35.0% | |
| CAACGCAATAAAATAGAGCT+TGG | - | chr1_3:16728404-16728423 | None:intergenic | 35.0% | |
| ! | CAAGCTCTATTTTATTGCGT+TGG | + | chr1_3:16728402-16728421 | Msa0106920:intron | 35.0% |
| ACAAATACTTGTTCAACGGT+CGG | + | chr1_3:16728503-16728522 | Msa0106920:intron | 35.0% | |
| TGAGACAAATCAGTTTCACA+TGG | + | chr1_3:16728550-16728569 | Msa0106920:intron | 35.0% | |
| CAAATCAGTTTCACATGGTT+TGG | + | chr1_3:16728555-16728574 | Msa0106920:intron | 35.0% | |
| TTCTGTCAAAATGGAATGAG+CGG | + | chr1_3:16728593-16728612 | Msa0106920:intron | 35.0% | |
| AACAACAGTAATAAGTGGAC+GGG | - | chr1_3:16728627-16728646 | None:intergenic | 35.0% | |
| ! | CTGTAATTGTTTCTTCTCTC+TGG | - | chr1_3:16728894-16728913 | None:intergenic | 35.0% |
| CAGAGAGAAGAAACAATTAC+AGG | + | chr1_3:16728892-16728911 | Msa0106920:intron | 35.0% | |
| TCTGATCTACAGATGTTCTT+CGG | + | chr1_3:16729084-16729103 | Msa0106920:intron | 35.0% | |
| ! | TCATGATGAAGGATAATGGT+GGG | + | chr1_3:16729172-16729191 | Msa0106920:intron | 35.0% |
| CTAAAAGTGATATATCTGCG+AGG | + | chr1_3:16729496-16729515 | Msa0106920:intron | 35.0% | |
| !! | GTGTTGTCTTTGATTTGTCT+TGG | - | chr1_3:16729658-16729677 | None:intergenic | 35.0% |
| ! | GCACAAAAACACATGGTTTT+AGG | + | chr1_3:16729732-16729751 | Msa0106920:CDS | 35.0% |
| CACACACATAGCTATATACA+TGG | - | chr1_3:16729934-16729953 | None:intergenic | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+TGG | + | chr1_3:16730145-16730164 | Msa0106920:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | + | chr1_3:16730195-16730214 | Msa0106920:CDS | 35.0% | |
| CAGACCCATTTGGAAGTTTA+AGG | - | chr1_3:16725418-16725437 | None:intergenic | 40.0% | |
| GTCTGCGTGCAAAATGAATT+GGG | + | chr1_3:16725433-16725452 | Msa0106920:CDS | 40.0% | |
| TGCAATGCAGTGATGGTATT+TGG | + | chr1_3:16725456-16725475 | Msa0106920:CDS | 40.0% | |
| AATCTGACCCTCCTTTGTAT+TGG | - | chr1_3:16725538-16725557 | None:intergenic | 40.0% | |
| TTGTGAATGTTACTCCCTTG+AGG | - | chr1_3:16725779-16725798 | None:intergenic | 40.0% | |
| GCAACCCAACAAAAAGTTTC+AGG | + | chr1_3:16725818-16725837 | Msa0106920:CDS | 40.0% | |
| GTGAAACTAGGACTCTCATT+GGG | - | chr1_3:16726205-16726224 | None:intergenic | 40.0% | |
| AGTGAAACTAGGACTCTCAT+TGG | - | chr1_3:16726206-16726225 | None:intergenic | 40.0% | |
| TTATCGCCATGTCATGTTGA+AGG | + | chr1_3:16726232-16726251 | Msa0106920:intron | 40.0% | |
| TTTGTACCTAACTGTGTGAG+AGG | + | chr1_3:16726306-16726325 | Msa0106920:intron | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | + | chr1_3:16726689-16726708 | Msa0106920:CDS | 40.0% | |
| !!! | CAGGAGCAGTTTTGTTATGA+GGG | + | chr1_3:16726773-16726792 | Msa0106920:CDS | 40.0% |
| TACATAAATAGAGTGGGTCC+AGG | - | chr1_3:16727227-16727246 | None:intergenic | 40.0% | |
| GCAGAGACTAATGAAAACAG+AGG | + | chr1_3:16727369-16727388 | Msa0106920:intron | 40.0% | |
| GAGACTAATGAAAACAGAGG+AGG | + | chr1_3:16727372-16727391 | Msa0106920:intron | 40.0% | |
| TAATGAAAACAGAGGAGGCA+GGG | + | chr1_3:16727377-16727396 | Msa0106920:intron | 40.0% | |
| ! | GTATCATCTGTTTCAGGTCA+TGG | - | chr1_3:16727891-16727910 | None:intergenic | 40.0% |
| GAATGAGTTATTGCAAGGGA+AGG | + | chr1_3:16726689-16726708 | Msa0106920:CDS | 40.0% | |
| !! | AATTAGAAGTGTTGGTGAGG+AGG | + | chr1_3:16726716-16726735 | Msa0106920:CDS | 40.0% |
| !! | GTGGTTGGAAGTCATTTTCA+CGG | + | chr1_3:16728046-16728065 | Msa0106920:CDS | 40.0% |
| !! | TGGTTGGAAGTCATTTTCAC+GGG | + | chr1_3:16728047-16728066 | Msa0106920:CDS | 40.0% |
| TGCTATCATCTCAACCACAA+AGG | + | chr1_3:16728140-16728159 | Msa0106920:CDS | 40.0% | |
| CAATACCTTGAAACTTCTCC+GGG | - | chr1_3:16728173-16728192 | None:intergenic | 40.0% | |
| GCAATACCTTGAAACTTCTC+CGG | - | chr1_3:16728174-16728193 | None:intergenic | 40.0% | |
| CGCAATAAAATAGAGCTTGG+GGG | - | chr1_3:16728401-16728420 | None:intergenic | 40.0% | |
| GTTACGGTTATGTCGGATTT+CGG | - | chr1_3:16728485-16728504 | None:intergenic | 40.0% | |
| ! | CAGTTTCACATGGTTTGGAA+CGG | + | chr1_3:16728560-16728579 | Msa0106920:intron | 40.0% |
| CATACATTGGACAGTGTGTA+GGG | - | chr1_3:16728715-16728734 | None:intergenic | 40.0% | |
| ACATACATTGGACAGTGTGT+AGG | - | chr1_3:16728716-16728735 | None:intergenic | 40.0% | |
| ! | GTTTGATGGCACACATACAT+TGG | - | chr1_3:16728728-16728747 | None:intergenic | 40.0% |
| ATGTATGTGTGCCATCAAAC+AGG | + | chr1_3:16728728-16728747 | Msa0106920:intron | 40.0% | |
| TGTATGTGTGCCATCAAACA+GGG | + | chr1_3:16728729-16728748 | Msa0106920:intron | 40.0% | |
| ! | TTGTTTCTTCTCTCTGGTAG+TGG | - | chr1_3:16728888-16728907 | None:intergenic | 40.0% |
| GAGATGAGAGATATACAGAG+AGG | + | chr1_3:16728934-16728953 | Msa0106920:intron | 40.0% | |
| ! | CTCATGATGAAGGATAATGG+TGG | + | chr1_3:16729171-16729190 | Msa0106920:intron | 40.0% |
| GTTGTGGGTAGTGTAAATTG+TGG | + | chr1_3:16729194-16729213 | Msa0106920:intron | 40.0% | |
| AGGGATCTACTGAAGAAGTT+GGG | - | chr1_3:16729599-16729618 | None:intergenic | 40.0% | |
| ACAAGTCCACAAACTTCTCA+GGG | - | chr1_3:16729618-16729637 | None:intergenic | 40.0% | |
| !! | TTGATTTGTCTTGGACTCCT+TGG | - | chr1_3:16729649-16729668 | None:intergenic | 40.0% |
| GACAACACCCGTAAAAGATA+TGG | + | chr1_3:16729670-16729689 | Msa0106920:CDS | 40.0% | |
| ! | ATGGAATATGCGGGCAATTT+TGG | + | chr1_3:16729689-16729708 | Msa0106920:CDS | 40.0% |
| TACTGCAGATTCTGTAAGTC+TGG | + | chr1_3:16729839-16729858 | Msa0106920:intron | 40.0% | |
| ACTGCAGATTCTGTAAGTCT+GGG | + | chr1_3:16729840-16729859 | Msa0106920:intron | 40.0% | |
| GGGTTTACATGAGATGTTCA+AGG | + | chr1_3:16729860-16729879 | Msa0106920:CDS | 40.0% | |
| TATTCAGTGGAGTTGAGAGT+AGG | + | chr1_3:16730040-16730059 | Msa0106920:CDS | 40.0% | |
| ATTCAGTGGAGTTGAGAGTA+GGG | + | chr1_3:16730041-16730060 | Msa0106920:CDS | 40.0% | |
| ! | ATTTTGCACGCAGACCCATT+TGG | - | chr1_3:16725428-16725447 | None:intergenic | 45.0% |
| GGTCTGCGTGCAAAATGAAT+TGG | + | chr1_3:16725432-16725451 | Msa0106920:CDS | 45.0% | |
| AATTGGGTGCAATGCAGTGA+TGG | + | chr1_3:16725449-16725468 | Msa0106920:CDS | 45.0% | |
| TAATGGAAACACAGGAGGCA+TGG | + | chr1_3:16726123-16726142 | Msa0106920:CDS | 45.0% | |
| ! | AATGGAAACACAGGAGGCAT+GGG | + | chr1_3:16726124-16726143 | Msa0106920:CDS | 45.0% |
| TGAAAGCCTCTCACACAGTT+AGG | - | chr1_3:16726315-16726334 | None:intergenic | 45.0% | |
| ATTCGTGCACGAAATGTGCA+AGG | - | chr1_3:16726596-16726615 | None:intergenic | 45.0% | |
| ! | GTATCGTCTGTTTCAGGTCA+TGG | - | chr1_3:16726644-16726663 | None:intergenic | 45.0% |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | + | chr1_3:16726718-16726737 | Msa0106920:CDS | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | + | chr1_3:16726719-16726738 | Msa0106920:CDS | 45.0% |
| !!! | GCAGGAGCAGTTTTGTTATG+AGG | + | chr1_3:16726772-16726791 | Msa0106920:CDS | 45.0% |
| !!! | AGCAGTTTTGTTATGAGGGC+TGG | + | chr1_3:16726777-16726796 | Msa0106920:CDS | 45.0% |
| !! | GTTTTGTTATGAGGGCTGGT+TGG | + | chr1_3:16726781-16726800 | Msa0106920:CDS | 45.0% |
| CTAATGAAAACAGAGGAGGC+AGG | + | chr1_3:16727376-16727395 | Msa0106920:intron | 45.0% | |
| GTGAAGCTAGGGTTCTCATT+GGG | - | chr1_3:16727459-16727478 | None:intergenic | 45.0% | |
| AGTGAAGCTAGGGTTCTCAT+TGG | - | chr1_3:16727460-16727479 | None:intergenic | 45.0% | |
| TGAAAGCCTCTCACACAGTT+GGG | - | chr1_3:16726315-16726334 | None:intergenic | 45.0% | |
| ATGAAAGCCTCTCACACAGT+TGG | - | chr1_3:16726316-16726335 | None:intergenic | 45.0% | |
| TTGGTGAGGAGGATAGAACA+TGG | + | chr1_3:16727974-16727993 | Msa0106920:CDS | 45.0% | |
| ! | GTTTTCGAATGGGAAGTGGT+TGG | + | chr1_3:16728031-16728050 | Msa0106920:CDS | 45.0% |
| ! | CGGGAACATAACTTGCAAGT+CGG | + | chr1_3:16728066-16728085 | Msa0106920:CDS | 45.0% |
| CATCTCAACCACAAAGGAAC+CGG | + | chr1_3:16728146-16728165 | Msa0106920:CDS | 45.0% | |
| ATCTCAACCACAAAGGAACC+GGG | + | chr1_3:16728147-16728166 | Msa0106920:CDS | 45.0% | |
| CGAAAGCGGTTCTGTCAAAA+TGG | + | chr1_3:16728584-16728603 | Msa0106920:intron | 45.0% | |
| TCAAGACACACCCTGTTTGA+TGG | - | chr1_3:16728742-16728761 | None:intergenic | 45.0% | |
| !! | TTCTTCTCTCTGGTAGTGGT+GGG | - | chr1_3:16728884-16728903 | None:intergenic | 45.0% |
| !! | TTTCTTCTCTCTGGTAGTGG+TGG | - | chr1_3:16728885-16728904 | None:intergenic | 45.0% |
| ! | TGACGGGTCTAACGGAATAA+CGG | - | chr1_3:16729020-16729039 | None:intergenic | 45.0% |
| GACCGTTTCAACGTCAGTTT+CGG | - | chr1_3:16729047-16729066 | None:intergenic | 45.0% | |
| GAAACTGACGTTGAAACGGT+CGG | + | chr1_3:16729046-16729065 | Msa0106920:intron | 45.0% | |
| AAACTGACGTTGAAACGGTC+GGG | + | chr1_3:16729047-16729066 | Msa0106920:intron | 45.0% | |
| TTCTTCGGTGAGCAGTTGTT+GGG | + | chr1_3:16729099-16729118 | Msa0106920:intron | 45.0% | |
| !! | TGAAGGATAATGGTGGGTTG+TGG | + | chr1_3:16729178-16729197 | Msa0106920:intron | 45.0% |
| !! | GAAGGATAATGGTGGGTTGT+GGG | + | chr1_3:16729179-16729198 | Msa0106920:intron | 45.0% |
| GGGATCTACTGAAGAAGTTG+GGG | - | chr1_3:16729598-16729617 | None:intergenic | 45.0% | |
| CAGGGATCTACTGAAGAAGT+TGG | - | chr1_3:16729600-16729619 | None:intergenic | 45.0% | |
| GTAGATCCCTGAGAAGTTTG+TGG | + | chr1_3:16729609-16729628 | Msa0106920:intron | 45.0% | |
| CACAAGTCCACAAACTTCTC+AGG | - | chr1_3:16729619-16729638 | None:intergenic | 45.0% | |
| TGGACTTGTGCAGAAAACCA+AGG | + | chr1_3:16729629-16729648 | Msa0106920:intron | 45.0% | |
| !! | TATGCGGGCAATTTTGGAGA+TGG | + | chr1_3:16729695-16729714 | Msa0106920:CDS | 45.0% |
| AGGAGCTGCACAAAAACACA+TGG | + | chr1_3:16729725-16729744 | Msa0106920:CDS | 45.0% | |
| TGCTTCTTCAACAGCTCACT+TGG | - | chr1_3:16730004-16730023 | None:intergenic | 45.0% | |
| TTCAGTGGAGTTGAGAGTAG+GGG | + | chr1_3:16730042-16730061 | Msa0106920:CDS | 45.0% | |
| ! | GGAAGGAACATGGTTTGTAG+AGG | + | chr1_3:16730063-16730082 | Msa0106920:CDS | 45.0% |
| ATGAACATCTCGACTATGGG+TGG | + | chr1_3:16730095-16730114 | Msa0106920:CDS | 45.0% | |
| GACTATGGGTGGTTCACTAA+AGG | + | chr1_3:16730106-16730125 | Msa0106920:CDS | 45.0% | |
| ACTACTGCTGCTACACCTCA+AGG | + | chr1_3:16725761-16725780 | Msa0106920:CDS | 50.0% | |
| CTACTGCTGCTACACCTCAA+GGG | + | chr1_3:16725762-16725781 | Msa0106920:CDS | 50.0% | |
| GCAGAGGCTAATGGAAACAC+AGG | + | chr1_3:16726115-16726134 | Msa0106920:intron | 50.0% | |
| GAGGCTAATGGAAACACAGG+AGG | + | chr1_3:16726118-16726137 | Msa0106920:intron | 50.0% | |
| TTTGTGCCCAACTGTGTGAG+AGG | + | chr1_3:16727560-16727579 | Msa0106920:intron | 50.0% | |
| CGGTTATGTCGGATTTCGGT+CGG | - | chr1_3:16728481-16728500 | None:intergenic | 50.0% | |
| ! | TGGTTTGGAACGGACGAAAG+CGG | + | chr1_3:16728570-16728589 | Msa0106920:intron | 50.0% |
| !! | GGTCTAACGGAATAACGGGT+GGG | - | chr1_3:16729015-16729034 | None:intergenic | 50.0% |
| GACGGGTCTAACGGAATAAC+GGG | - | chr1_3:16729019-16729038 | None:intergenic | 50.0% | |
| CGTTTCAACGTCAGTTTCGG+CGG | - | chr1_3:16729044-16729063 | None:intergenic | 50.0% | |
| CGCCGAAACTGACGTTGAAA+CGG | + | chr1_3:16729042-16729061 | Msa0106920:intron | 50.0% | |
| GTTCTTCGGTGAGCAGTTGT+TGG | + | chr1_3:16729098-16729117 | Msa0106920:intron | 50.0% | |
| GTGTGTAGAGTGTGTGTTCG+TGG | + | chr1_3:16729289-16729308 | Msa0106920:intron | 50.0% | |
| TGAGAGTAGGGGAAGGAACA+TGG | + | chr1_3:16730053-16730072 | Msa0106920:CDS | 50.0% | |
| ATGGGTGGTTCACTAAAGGC+TGG | + | chr1_3:16730110-16730129 | Msa0106920:CDS | 50.0% | |
| TTTGCATGGTCGCTCCGATG+TGG | + | chr1_3:16725497-16725516 | Msa0106920:CDS | 55.0% | |
| GGCATGGTTCCTTCGTGGTT+GGG | - | chr1_3:16726902-16726921 | None:intergenic | 55.0% | |
| CCTTGAAACTGCTCAGGGCA+TGG | - | chr1_3:16726918-16726937 | None:intergenic | 55.0% | |
| CCATGCCCTGAGCAGTTTCA+AGG | + | chr1_3:16726915-16726934 | Msa0106920:CDS | 55.0% | |
| !! | AGCTTGGGGGACTAGCTGAA+GGG | - | chr1_3:16728388-16728407 | None:intergenic | 55.0% |
| GGTCGGATGTGTACGAGCTT+CGG | + | chr1_3:16728520-16728539 | Msa0106920:intron | 55.0% | |
| TACAACCGAGCCAAACCACC+CGG | + | chr1_3:16728989-16729008 | Msa0106920:intron | 55.0% | |
| !! | TAACGGAATAACGGGTGGGC+CGG | - | chr1_3:16729011-16729030 | None:intergenic | 55.0% |
| ! | GGGTCTAACGGAATAACGGG+TGG | - | chr1_3:16729016-16729035 | None:intergenic | 55.0% |
| ACGTCAGTTTCGGCGGTTGA+CGG | - | chr1_3:16729037-16729056 | None:intergenic | 55.0% | |
| GACGTTGAAACGGTCGGGAA+TGG | + | chr1_3:16729052-16729071 | Msa0106920:intron | 55.0% | |
| TGACAGTAAGGGGTGAGCAC+CGG | - | chr1_3:16729145-16729164 | None:intergenic | 55.0% | |
| GTGGAGTTGAGAGTAGGGGA+AGG | + | chr1_3:16730046-16730065 | Msa0106920:CDS | 55.0% | |
| ! | GTGTTGGTGAGGACAGGGCA+TGG | + | chr1_3:16726724-16726743 | Msa0106920:CDS | 60.0% |
| GGGCATGGTTCCTTCGTGGT+TGG | - | chr1_3:16726903-16726922 | None:intergenic | 60.0% | |
| CTCAGGGCATGGTTCCTTCG+TGG | - | chr1_3:16726907-16726926 | None:intergenic | 60.0% | |
| AACCACAAAGGAACCGGGCC+CGG | + | chr1_3:16728152-16728171 | Msa0106920:CDS | 60.0% | |
| CCTTGAAACTTCTCCGGGCC+CGG | - | chr1_3:16728168-16728187 | None:intergenic | 60.0% | |
| !! | GAGCTTGGGGGACTAGCTGA+AGG | - | chr1_3:16728389-16728408 | None:intergenic | 60.0% |
| !! | AACGGAATAACGGGTGGGCC+GGG | - | chr1_3:16729010-16729029 | None:intergenic | 60.0% |
| ! | TCGGCGGTTGACGGGTCTAA+CGG | - | chr1_3:16729028-16729047 | None:intergenic | 60.0% |
| CGTCAGTTTCGGCGGTTGAC+GGG | - | chr1_3:16729036-16729055 | None:intergenic | 60.0% | |
| CAAATCCGCCCGTAACCGAC+CGG | + | chr1_3:16729123-16729142 | Msa0106920:intron | 60.0% | |
| !! | AGTAAGGGGTGAGCACCGGT+CGG | - | chr1_3:16729141-16729160 | None:intergenic | 60.0% |
| CCGGGCCCGGAGAAGTTTCA+AGG | + | chr1_3:16728165-16728184 | Msa0106920:CDS | 65.0% | |
| TCTCACACTTCACGCGCGCG+TGG | - | chr1_3:16728666-16728685 | None:intergenic | 65.0% | |
| ! | CGGTCGGTTACGGGCGGATT+TGG | - | chr1_3:16729125-16729144 | None:intergenic | 65.0% |
| !! | GGTGAGCACCGGTCGGTTAC+GGG | - | chr1_3:16729134-16729153 | None:intergenic | 65.0% |
| !! | GGGTGAGCACCGGTCGGTTA+CGG | - | chr1_3:16729135-16729154 | None:intergenic | 65.0% |
| CTCCGGGCCCGGTTCCTTTG+TGG | - | chr1_3:16728157-16728176 | None:intergenic | 70.0% | |
| ! | GTGGGCCGGGTGGTTTGGCT+CGG | - | chr1_3:16728997-16729016 | None:intergenic | 70.0% |
| AACGGGTGGGCCGGGTGGTT+TGG | - | chr1_3:16729002-16729021 | None:intergenic | 70.0% | |
| !! | GGAATAACGGGTGGGCCGGG+TGG | - | chr1_3:16729007-16729026 | None:intergenic | 70.0% |
| !! | GAGCACCGGTCGGTTACGGG+CGG | - | chr1_3:16729131-16729150 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16725347 | 16730231 | 16725347 | ID=Msa0106920;Name=Msa0106920 |
| chr1_3 | mRNA | 16725347 | 16730231 | 16725347 | ID=Msa0106920-mRNA-1;Parent=Msa0106920;Name=Msa0106920-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0|0|0|1|1|1|7|0|603 |
| chr1_3 | exon | 16725347 | 16725839 | 16725347 | ID=Msa0106920-mRNA-1:exon:6295;Parent=Msa0106920-mRNA-1 |
| chr1_3 | exon | 16726119 | 16726246 | 16726119 | ID=Msa0106920-mRNA-1:exon:6296;Parent=Msa0106920-mRNA-1 |
| chr1_3 | exon | 16726657 | 16727148 | 16726657 | ID=Msa0106920-mRNA-1:exon:6297;Parent=Msa0106920-mRNA-1 |
| chr1_3 | exon | 16727904 | 16728186 | 16727904 | ID=Msa0106920-mRNA-1:exon:6298;Parent=Msa0106920-mRNA-1 |
| chr1_3 | exon | 16729642 | 16729755 | 16729642 | ID=Msa0106920-mRNA-1:exon:6299;Parent=Msa0106920-mRNA-1 |
| chr1_3 | exon | 16729847 | 16729905 | 16729847 | ID=Msa0106920-mRNA-1:exon:6300;Parent=Msa0106920-mRNA-1 |
| chr1_3 | exon | 16729989 | 16730231 | 16729989 | ID=Msa0106920-mRNA-1:exon:6301;Parent=Msa0106920-mRNA-1 |
| chr1_3 | CDS | 16725347 | 16725839 | 16725347 | ID=Msa0106920-mRNA-1:cds;Parent=Msa0106920-mRNA-1 |
| chr1_3 | CDS | 16726119 | 16726246 | 16726119 | ID=Msa0106920-mRNA-1:cds;Parent=Msa0106920-mRNA-1 |
| chr1_3 | CDS | 16726657 | 16727148 | 16726657 | ID=Msa0106920-mRNA-1:cds;Parent=Msa0106920-mRNA-1 |
| chr1_3 | CDS | 16727904 | 16728186 | 16727904 | ID=Msa0106920-mRNA-1:cds;Parent=Msa0106920-mRNA-1 |
| chr1_3 | CDS | 16729642 | 16729755 | 16729642 | ID=Msa0106920-mRNA-1:cds;Parent=Msa0106920-mRNA-1 |
| chr1_3 | CDS | 16729847 | 16729905 | 16729847 | ID=Msa0106920-mRNA-1:cds;Parent=Msa0106920-mRNA-1 |
| chr1_3 | CDS | 16729989 | 16730231 | 16729989 | ID=Msa0106920-mRNA-1:cds;Parent=Msa0106920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
