Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153600 | A0A072U9K2 | 67.227 | 476 | 112 | 7 | 12 | 453 | 5 | 470 | 0.0 | 617 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0153600 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106920 | Msa0153600 | 0.825694 | 4.077206e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153600 | MtrunA17_Chr6g0476171 | 55.986 | 284 | 58 | 5 | 197 | 453 | 2 | 245 | 2.68e-94 | 285 |
| Msa0153600 | MtrunA17_Chr1g0163141 | 85.890 | 163 | 19 | 2 | 37 | 196 | 7 | 168 | 3.58e-89 | 269 |
| Msa0153600 | MtrunA17_Chr6g0476181 | 73.750 | 160 | 31 | 2 | 40 | 196 | 1 | 152 | 1.84e-74 | 230 |
| Msa0153600 | MtrunA17_Chr1g0163131 | 41.543 | 337 | 134 | 9 | 1 | 304 | 1 | 307 | 2.09e-73 | 233 |
| Msa0153600 | MtrunA17_Chr1g0163131 | 44.318 | 88 | 47 | 1 | 366 | 453 | 221 | 306 | 1.11e-15 | 77.8 |
| Msa0153600 | MtrunA17_Chr1g0163101 | 60.106 | 188 | 50 | 3 | 12 | 196 | 4 | 169 | 7.58e-72 | 224 |
| Msa0153600 | MtrunA17_Chr1g0163181 | 33.261 | 460 | 223 | 19 | 34 | 453 | 14 | 429 | 1.71e-58 | 198 |
| Msa0153600 | MtrunA17_Chr1g0162161 | 60.625 | 160 | 40 | 3 | 40 | 196 | 3 | 142 | 7.66e-58 | 187 |
| Msa0153600 | MtrunA17_Chr1g0163201 | 31.651 | 436 | 213 | 14 | 41 | 453 | 19 | 392 | 2.40e-51 | 178 |
| Msa0153600 | MtrunA17_Chr1g0163081 | 56.329 | 158 | 41 | 4 | 40 | 194 | 5 | 137 | 7.24e-47 | 158 |
| Msa0153600 | MtrunA17_Chr1g0163161 | 57.143 | 147 | 40 | 4 | 53 | 196 | 1 | 127 | 2.87e-45 | 154 |
| Msa0153600 | MtrunA17_Chr1g0163121 | 54.037 | 161 | 40 | 4 | 39 | 196 | 9 | 138 | 5.10e-45 | 154 |
| Msa0153600 | MtrunA17_Chr1g0163261 | 34.891 | 321 | 144 | 10 | 25 | 315 | 9 | 294 | 3.54e-42 | 151 |
| Msa0153600 | MtrunA17_Chr1g0163251 | 35.159 | 347 | 189 | 14 | 34 | 365 | 14 | 339 | 1.22e-41 | 152 |
| Msa0153600 | MtrunA17_Chr1g0163231 | 35.410 | 305 | 134 | 9 | 25 | 302 | 9 | 277 | 1.17e-40 | 147 |
| Msa0153600 | MtrunA17_Chr1g0163111 | 35.741 | 263 | 120 | 11 | 205 | 453 | 1 | 228 | 2.47e-33 | 125 |
| Msa0153600 | MtrunA17_Chr1g0163151 | 31.250 | 272 | 113 | 8 | 205 | 453 | 1 | 221 | 1.62e-30 | 117 |
| Msa0153600 | MtrunA17_Chr1g0171611 | 31.399 | 293 | 150 | 10 | 25 | 302 | 9 | 265 | 2.28e-30 | 119 |
| Msa0153600 | MtrunA17_Chr1g0208771 | 24.512 | 461 | 282 | 14 | 41 | 452 | 13 | 456 | 2.38e-24 | 105 |
| Msa0153600 | MtrunA17_Chr7g0233561 | 26.586 | 331 | 190 | 9 | 10 | 306 | 3 | 314 | 3.92e-24 | 102 |
| Msa0153600 | MtrunA17_Chr4g0067431 | 25.455 | 330 | 196 | 11 | 20 | 315 | 10 | 323 | 6.36e-24 | 102 |
| Msa0153600 | MtrunA17_Chr3g0131891 | 27.554 | 323 | 169 | 13 | 19 | 306 | 13 | 305 | 7.13e-24 | 102 |
| Msa0153600 | MtrunA17_Chr3g0103171 | 28.425 | 292 | 148 | 12 | 41 | 303 | 6 | 265 | 2.21e-22 | 96.3 |
| Msa0153600 | MtrunA17_Chr1g0163221 | 25.846 | 325 | 186 | 10 | 19 | 315 | 5 | 302 | 1.10e-21 | 95.9 |
| Msa0153600 | MtrunA17_Chr8g0390841 | 22.465 | 503 | 294 | 16 | 23 | 452 | 37 | 516 | 2.47e-20 | 93.6 |
| Msa0153600 | MtrunA17_Chr1g0163241 | 37.762 | 143 | 81 | 4 | 41 | 178 | 23 | 162 | 2.56e-20 | 87.8 |
| Msa0153600 | MtrunA17_Chr1g0162151 | 30.137 | 219 | 78 | 7 | 240 | 452 | 57 | 206 | 1.11e-18 | 84.7 |
| Msa0153600 | MtrunA17_Chr3g0103181 | 25.796 | 314 | 172 | 12 | 15 | 303 | 2 | 279 | 2.81e-18 | 84.7 |
| Msa0153600 | MtrunA17_Chr7g0233531 | 25.418 | 299 | 157 | 8 | 40 | 306 | 1 | 265 | 2.95e-17 | 81.6 |
| Msa0153600 | MtrunA17_Chr1g0163191 | 39.623 | 106 | 59 | 3 | 34 | 134 | 14 | 119 | 4.39e-17 | 78.6 |
| Msa0153600 | MtrunA17_Chr7g0233541 | 25.667 | 300 | 172 | 12 | 40 | 306 | 1 | 282 | 5.08e-17 | 81.3 |
| Msa0153600 | MtrunA17_Chr7g0233571 | 30.396 | 227 | 136 | 8 | 17 | 237 | 2 | 212 | 1.12e-16 | 79.0 |
| Msa0153600 | MtrunA17_Chr3g0103151 | 35.714 | 140 | 74 | 6 | 23 | 156 | 10 | 139 | 5.43e-16 | 75.5 |
| Msa0153600 | MtrunA17_Chr5g0419201 | 29.605 | 152 | 98 | 5 | 25 | 167 | 16 | 167 | 5.93e-16 | 76.3 |
| Msa0153600 | MtrunA17_Chr1g0163091 | 48.529 | 68 | 35 | 0 | 248 | 315 | 63 | 130 | 9.55e-16 | 74.7 |
| Msa0153600 | MtrunA17_Chr1g0163071 | 22.449 | 294 | 202 | 5 | 40 | 309 | 1 | 292 | 1.54e-15 | 77.4 |
| Msa0153600 | MtrunA17_Chr6g0467351 | 39.362 | 94 | 53 | 3 | 22 | 111 | 12 | 105 | 8.48e-15 | 73.6 |
| Msa0153600 | MtrunA17_Chr1g0163061 | 41.489 | 94 | 51 | 2 | 22 | 111 | 12 | 105 | 1.45e-14 | 73.9 |
| Msa0153600 | MtrunA17_Chr3g0103191 | 29.310 | 232 | 124 | 11 | 15 | 239 | 2 | 200 | 4.51e-14 | 72.0 |
| Msa0153600 | MtrunA17_Chr3g0103201 | 29.796 | 245 | 117 | 12 | 83 | 302 | 5 | 219 | 2.88e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153600 | AT4G33280.1 | 25.163 | 306 | 170 | 11 | 36 | 303 | 34 | 318 | 1.23e-13 | 72.4 |
Find 81 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGACCCATTTGGAAGTTTA+AGG | 0.148962 | 1_4:+17062190 | None:intergenic |
| ATGGAATATGCGGGCAATTT+TGG | 0.164513 | 1_4:-17059170 | Msa0153600:CDS |
| TCCCATTCGAAAACTTATTC+TGG | 0.233504 | 1_4:+17060837 | None:intergenic |
| TATAATGAACATCTCGACTA+TGG | 0.280428 | 1_4:-17058768 | Msa0153600:CDS |
| TTTGGAAGTTTAAGGGATAT+TGG | 0.281020 | 1_4:+17062198 | None:intergenic |
| TGCAATGCAGTGATGGTATT+TGG | 0.296187 | 1_4:-17062149 | Msa0153600:CDS |
| ATGGTATTTGGCTTCAAAAT+TGG | 0.298035 | 1_4:-17062137 | Msa0153600:CDS |
| TACTGCAGATTCTGTAAGTC+TGG | 0.316891 | 1_4:-17059020 | Msa0153600:intron |
| AGTTTAAGGGATATTGGATT+TGG | 0.337634 | 1_4:+17062204 | None:intergenic |
| CTCCGGGCCCGGTTCCTTTG+TGG | 0.341042 | 1_4:+17060705 | None:intergenic |
| TTGATTTGTCTTGGACTCCT+TGG | 0.347774 | 1_4:+17059213 | None:intergenic |
| TTATCACCTTCAACATGATA+TGG | 0.351084 | 1_4:+17061367 | None:intergenic |
| AATCTGACCCTCCTTTGTAT+TGG | 0.356917 | 1_4:+17062070 | None:intergenic |
| AAGAAGCATGGTATATTTAG+TGG | 0.374789 | 1_4:-17058843 | Msa0153600:CDS |
| AGACCCATTTGGAAGTTTAA+GGG | 0.398720 | 1_4:+17062191 | None:intergenic |
| CATCTCAACCACAAAGGAAC+CGG | 0.404419 | 1_4:-17060713 | Msa0153600:CDS |
| GACAACACCCGTAAAAGATA+TGG | 0.404989 | 1_4:-17059189 | Msa0153600:CDS |
| GTGTTGTCTTTGATTTGTCT+TGG | 0.415804 | 1_4:+17059204 | None:intergenic |
| TACCTCTCTACAAAATTTCT+CGG | 0.425845 | 1_4:+17062240 | None:intergenic |
| CCTTGAAACTTCTCCGGGCC+CGG | 0.437013 | 1_4:+17060694 | None:intergenic |
| ATTCAGTGGAGTTGAGAGTA+GGG | 0.448522 | 1_4:-17058818 | Msa0153600:CDS |
| GGTCTGCGTGCAAAATGAAT+TGG | 0.448911 | 1_4:-17062173 | Msa0153600:CDS |
| ATATCCCTTAAACTTCCAAA+TGG | 0.449227 | 1_4:-17062195 | Msa0153600:CDS |
| GCAATACCTTGAAACTTCTC+CGG | 0.461040 | 1_4:+17060688 | None:intergenic |
| TGCTTCTTCAACAGCTCACT+TGG | 0.461685 | 1_4:+17058858 | None:intergenic |
| AACCACAAAGGAACCGGGCC+CGG | 0.463990 | 1_4:-17060707 | Msa0153600:CDS |
| GGGTTTACATGAGATGTTCA+AGG | 0.483513 | 1_4:-17058999 | Msa0153600:CDS |
| TGAGAGTAGGGGAAGGAACA+TGG | 0.483751 | 1_4:-17058806 | Msa0153600:CDS |
| GTCTGCGTGCAAAATGAATT+GGG | 0.489112 | 1_4:-17062172 | Msa0153600:CDS |
| GCAACGGCGGCATTTACAAT+GGG | 0.504133 | 1_4:-17063815 | Msa0153600:CDS |
| GGCAACGGCGGCATTTACAA+TGG | 0.504266 | 1_4:-17063816 | Msa0153600:CDS |
| AGTGAAGCTAGGGTTCTCAT+TGG | 0.506413 | 1_4:+17061402 | None:intergenic |
| GACTATGGGTGGTTCACTAA+AGG | 0.507216 | 1_4:-17058753 | Msa0153600:CDS |
| AGAGATTGCAAAGTAAAGAC+TGG | 0.515563 | 1_4:-17058714 | Msa0153600:CDS |
| ACTGCAGATTCTGTAAGTCT+GGG | 0.516733 | 1_4:-17059019 | Msa0153600:intron |
| AATTCAGTGGAGTTGAGAGT+AGG | 0.518002 | 1_4:-17058819 | Msa0153600:CDS |
| TATCCCTTAAACTTCCAAAT+GGG | 0.519149 | 1_4:-17062194 | Msa0153600:CDS |
| TTTGGCTTCAAAATTGGAAG+AGG | 0.520115 | 1_4:-17062131 | Msa0153600:CDS |
| TAATGGAAACACAGGAGGCA+TGG | 0.520474 | 1_4:-17061482 | Msa0153600:CDS |
| AATAATATGAGAGTGAAGCT+AGG | 0.520491 | 1_4:+17061391 | None:intergenic |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_4:-17058664 | Msa0153600:CDS |
| CCGGGCCCGGAGAAGTTTCA+AGG | 0.523708 | 1_4:-17060694 | Msa0153600:intron |
| GTGAAGCTAGGGTTCTCATT+GGG | 0.527042 | 1_4:+17061403 | None:intergenic |
| TTCAGTGGAGTTGAGAGTAG+GGG | 0.529294 | 1_4:-17058817 | Msa0153600:CDS |
| CAATACCTTGAAACTTCTCC+GGG | 0.531230 | 1_4:+17060689 | None:intergenic |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_4:-17060904 | Msa0153600:CDS |
| AATGGAAACACAGGAGGCAT+GGG | 0.543418 | 1_4:-17061481 | Msa0153600:CDS |
| ATAATGAACATCTCGACTAT+GGG | 0.547880 | 1_4:-17058767 | Msa0153600:CDS |
| TATATTTAGTGGAAATTCAG+TGG | 0.549056 | 1_4:-17058832 | Msa0153600:CDS |
| TTGAAGCTCGCGTTGTTGAA+CGG | 0.558036 | 1_4:+17063755 | None:intergenic |
| ATGGGTGGTTCACTAAAGGC+TGG | 0.558556 | 1_4:-17058749 | Msa0153600:CDS |
| ACTACTGCTGCTACACCTCA+AGG | 0.560864 | 1_4:-17061844 | Msa0153600:CDS |
| ATAGCAATCGTGAATGAAAG+TGG | 0.565935 | 1_4:+17060736 | None:intergenic |
| AATTAGAAGTGTTGGTGAGG+AGG | 0.570785 | 1_4:-17060896 | Msa0153600:CDS |
| AAAATTGGAAGAGGTTTGCA+TGG | 0.571811 | 1_4:-17062122 | Msa0153600:CDS |
| GTAAAAGATATGGAATATGC+GGG | 0.574921 | 1_4:-17059179 | Msa0153600:CDS |
| ATCTCAACCACAAAGGAACC+GGG | 0.574935 | 1_4:-17060712 | Msa0153600:CDS |
| TTGTGAATGTTACTCCCTTG+AGG | 0.576438 | 1_4:+17061829 | None:intergenic |
| GGCGGCATTTACAATGGGCG+TGG | 0.593490 | 1_4:-17063810 | Msa0153600:CDS |
| AACAATTAGAAGTGTTGGTG+AGG | 0.594775 | 1_4:-17060899 | Msa0153600:CDS |
| GCAGAGGCTAATGGAAACAC+AGG | 0.596384 | 1_4:-17061490 | Msa0153600:intron |
| ATAATATGAGAGTGAAGCTA+GGG | 0.600162 | 1_4:+17061392 | None:intergenic |
| CGTAAAAGATATGGAATATG+CGG | 0.600766 | 1_4:-17059180 | Msa0153600:CDS |
| TTTGCATGGTCGCTCCGATG+TGG | 0.602338 | 1_4:-17062108 | Msa0153600:CDS |
| AATTGGGTGCAATGCAGTGA+TGG | 0.617555 | 1_4:-17062156 | Msa0153600:CDS |
| AGTGAGCTGTTGAAGAAGCA+TGG | 0.617628 | 1_4:-17058855 | Msa0153600:CDS |
| TATTCAAGTATGAGATGCAA+CGG | 0.618523 | 1_4:-17062006 | Msa0153600:CDS |
| GGAAGGAACATGGTTTGTAG+AGG | 0.629163 | 1_4:-17058796 | Msa0153600:CDS |
| ATGAACATCTCGACTATGGG+TGG | 0.635276 | 1_4:-17058764 | Msa0153600:CDS |
| TTTCAACAACAACACGGCAA+CGG | 0.635953 | 1_4:-17063831 | Msa0153600:CDS |
| CGGGAACATAACTTGCAAGT+CGG | 0.642213 | 1_4:-17060793 | Msa0153600:CDS |
| GTGGAGTTGAGAGTAGGGGA+AGG | 0.647557 | 1_4:-17058813 | Msa0153600:CDS |
| TGCTATCATCTCAACCACAA+AGG | 0.651551 | 1_4:-17060719 | Msa0153600:CDS |
| CTACTGCTGCTACACCTCAA+GGG | 0.653810 | 1_4:-17061843 | Msa0153600:CDS |
| CAACAACAACACGGCAACGG+CGG | 0.664470 | 1_4:-17063828 | Msa0153600:CDS |
| GGGCGTGGTAGTGAAGCTCA+AGG | 0.664959 | 1_4:-17063795 | Msa0153600:CDS |
| TGGACTTGTGCAGAAAACCA+AGG | 0.671628 | 1_4:-17059230 | Msa0153600:intron |
| AAACTAAAAGATCTCCACAT+CGG | 0.700040 | 1_4:+17062094 | None:intergenic |
| GAGGCTAATGGAAACACAGG+AGG | 0.702704 | 1_4:-17061487 | Msa0153600:CDS |
| ATGTCGTTTCAACAACAACA+CGG | 0.718899 | 1_4:-17063837 | Msa0153600:CDS |
| TTGGTGAGGAGGATAGAACA+TGG | 0.724838 | 1_4:-17060885 | Msa0153600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATATACAAATTTTTCA+AGG | - | chr1_4:17063054-17063073 | Msa0153600:intron | 10.0% |
| !! | TTGGAATTAAAAATAAATCA+TGG | - | chr1_4:17059562-17059581 | Msa0153600:intron | 15.0% |
| !! | ATTAAAAATAAATCATGGAA+AGG | - | chr1_4:17059567-17059586 | Msa0153600:intron | 15.0% |
| !!! | ATTAATGAGAAAAAAAGTAT+AGG | + | chr1_4:17061181-17061200 | None:intergenic | 15.0% |
| !!! | CAAATGTGTAAAATATTTTA+AGG | - | chr1_4:17061953-17061972 | Msa0153600:CDS | 15.0% |
| !!! | ATATTTTAAGGTTTAAATCT+TGG | - | chr1_4:17061965-17061984 | Msa0153600:CDS | 15.0% |
| !! | TGCTTGTAATAAATTAATTA+AGG | + | chr1_4:17062489-17062508 | None:intergenic | 15.0% |
| !!! | CTATTTTATTTTACAGTTAT+TGG | + | chr1_4:17062871-17062890 | None:intergenic | 15.0% |
| !! | GAAGAATAATGATATCTAAT+TGG | + | chr1_4:17058917-17058936 | None:intergenic | 20.0% |
| !!! | AATTGAAACTTTCTAGTTAT+TGG | + | chr1_4:17059974-17059993 | None:intergenic | 20.0% |
| !! | AAAAAGAGAATCAATTCAAA+TGG | - | chr1_4:17060633-17060652 | Msa0153600:intron | 20.0% |
| !! | TAAACAGATGAATGAATAAA+AGG | + | chr1_4:17060761-17060780 | None:intergenic | 20.0% |
| !! | TTATTCATTCATCTGTTTAT+AGG | - | chr1_4:17060762-17060781 | Msa0153600:CDS | 20.0% |
| !!! | AATTTGTATGGATTAAAAAG+TGG | + | chr1_4:17060848-17060867 | None:intergenic | 20.0% |
| !!! | GTATACTTTTGTAATTTGTA+TGG | + | chr1_4:17060860-17060879 | None:intergenic | 20.0% |
| !! | TACTAACAAAAACATATTCA+AGG | - | chr1_4:17061320-17061339 | Msa0153600:intron | 20.0% |
| !!! | TAACAAAAGAGAAAAAGTAT+AGG | - | chr1_4:17061372-17061391 | Msa0153600:intron | 20.0% |
| !!! | TATTCTTTTGAAAACCATTT+AGG | + | chr1_4:17061561-17061580 | None:intergenic | 20.0% |
| !!! | GAGAAAGAAGTTTATTTTAA+TGG | + | chr1_4:17062463-17062482 | None:intergenic | 20.0% |
| !!! | GATTTTAGTCATTCTAATAA+TGG | - | chr1_4:17062978-17062997 | Msa0153600:intron | 20.0% |
| !!! | CCAAGATTAATTTTTATACA+CGG | - | chr1_4:17063113-17063132 | Msa0153600:intron | 20.0% |
| !! | AACAAAGAAAACATAGTTTA+AGG | + | chr1_4:17063461-17063480 | None:intergenic | 20.0% |
| ! | TGAAATTATCATCAAGAATG+CGG | - | chr1_4:17059016-17059035 | Msa0153600:intron | 25.0% |
| !!! | AGATTTATTTTATGCCCTTT+GGG | - | chr1_4:17059606-17059625 | Msa0153600:intron | 25.0% |
| !!! | AAATCCTTACATGCTTTTTA+AGG | - | chr1_4:17059831-17059850 | Msa0153600:intron | 25.0% |
| !!! | TATATTTTCTCTGTTAGCTT+TGG | - | chr1_4:17060024-17060043 | Msa0153600:intron | 25.0% |
| ! | TACACTTAAAAATGTGGATA+GGG | - | chr1_4:17060084-17060103 | Msa0153600:intron | 25.0% |
| !!! | GTTTTTAGTATCAGACTTTT+AGG | + | chr1_4:17060179-17060198 | None:intergenic | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | - | chr1_4:17060426-17060445 | Msa0153600:intron | 25.0% |
| !!! | ATTGATTCTCTTTTTCTTGA+GGG | + | chr1_4:17060628-17060647 | None:intergenic | 25.0% |
| !!! | AATTGATTCTCTTTTTCTTG+AGG | + | chr1_4:17060629-17060648 | None:intergenic | 25.0% |
| !! | CAAAATTTGAGATGAACTAA+GGG | + | chr1_4:17060809-17060828 | None:intergenic | 25.0% |
| ! | AAAGTGTGCATAAATAAAGT+GGG | + | chr1_4:17060898-17060917 | None:intergenic | 25.0% |
| !! | AAAAGTGTGCATAAATAAAG+TGG | + | chr1_4:17060899-17060918 | None:intergenic | 25.0% |
| !! | AACTATTTTCAGCATTTGAA+AGG | + | chr1_4:17060986-17061005 | None:intergenic | 25.0% |
| !!! | TAGTTTTTAAAGTTTTGCAG+AGG | - | chr1_4:17061001-17061020 | Msa0153600:intron | 25.0% |
| ! | CTATTATCAAATGAGACATT+TGG | + | chr1_4:17061284-17061303 | None:intergenic | 25.0% |
| ! | AATTTGATACATTTAAGCAG+TGG | - | chr1_4:17061463-17061482 | Msa0153600:CDS | 25.0% |
| !! | TTTGATTGATTGTAGTTTGT+TGG | + | chr1_4:17061937-17061956 | None:intergenic | 25.0% |
| ! | ATGTTAATGTTACTGTCATT+AGG | - | chr1_4:17062083-17062102 | Msa0153600:CDS | 25.0% |
| ! | TGTTAATGTTACTGTCATTA+GGG | - | chr1_4:17062084-17062103 | Msa0153600:CDS | 25.0% |
| !!! | ATTGTCATGTTTACCTTTTT+TGG | - | chr1_4:17062417-17062436 | Msa0153600:intron | 25.0% |
| !! | ATGAGATTTTATGACAGTAA+GGG | + | chr1_4:17062804-17062823 | None:intergenic | 25.0% |
| ! | TTAAACACACTATCATCTAT+CGG | + | chr1_4:17062913-17062932 | None:intergenic | 25.0% |
| !! | ATAGATGATAGTGTGTTTAA+GGG | - | chr1_4:17062913-17062932 | Msa0153600:intron | 25.0% |
| ! | CCGTGTATAAAAATTAATCT+TGG | + | chr1_4:17063116-17063135 | None:intergenic | 25.0% |
| !! | TTTTATAACATCATCAGACA+AGG | - | chr1_4:17063532-17063551 | Msa0153600:intron | 25.0% |
| ! | TTTGTTCATATATATGCAGT+TGG | - | chr1_4:17063618-17063637 | Msa0153600:intron | 25.0% |
| ! | TATATTTAGTGGAAATTCAG+TGG | - | chr1_4:17063675-17063694 | Msa0153600:intron | 25.0% |
| CTCGATTACTTTGTATGATA+GGG | - | chr1_4:17059039-17059058 | Msa0153600:intron | 30.0% | |
| TCGATTACTTTGTATGATAG+GGG | - | chr1_4:17059040-17059059 | Msa0153600:intron | 30.0% | |
| TCTTATCTGTTGAAAGTTGA+AGG | - | chr1_4:17059103-17059122 | Msa0153600:intron | 30.0% | |
| ACCTCAACATAAGATAATGA+GGG | - | chr1_4:17059141-17059160 | Msa0153600:CDS | 30.0% | |
| ! | ATGAAAGAGGATAGTATTGA+GGG | - | chr1_4:17059310-17059329 | Msa0153600:intron | 30.0% |
| !!! | GAGATTTATTTTATGCCCTT+TGG | - | chr1_4:17059605-17059624 | Msa0153600:intron | 30.0% |
| CAAAAAAGATTGTTCAAGCA+CGG | - | chr1_4:17059767-17059786 | Msa0153600:intron | 30.0% | |
| !! | TTTTTAAGGATGCTTGCAAT+AGG | - | chr1_4:17059845-17059864 | Msa0153600:intron | 30.0% |
| !! | CTTTCTAGTTATTGGTTCAA+AGG | + | chr1_4:17059966-17059985 | None:intergenic | 30.0% |
| TACTGGTACACTTAAAAATG+TGG | - | chr1_4:17060078-17060097 | Msa0153600:intron | 30.0% | |
| GTACACTTAAAAATGTGGAT+AGG | - | chr1_4:17060083-17060102 | Msa0153600:intron | 30.0% | |
| !! | AGACTTTTAGGTGGAAAAAT+GGG | + | chr1_4:17060167-17060186 | None:intergenic | 30.0% |
| ! | TTTAGTATCAGACTTTTAGG+TGG | + | chr1_4:17060176-17060195 | None:intergenic | 30.0% |
| TACCTCTCTACAAAATTTCT+CGG | + | chr1_4:17060270-17060289 | None:intergenic | 30.0% | |
| !! | GAAATTTTGTAGAGAGGTAT+TGG | - | chr1_4:17060271-17060290 | Msa0153600:intron | 30.0% |
| AGTTTAAGGGATATTGGATT+TGG | + | chr1_4:17060306-17060325 | None:intergenic | 30.0% | |
| TTTGGAAGTTTAAGGGATAT+TGG | + | chr1_4:17060312-17060331 | None:intergenic | 30.0% | |
| ATATCCCTTAAACTTCCAAA+TGG | - | chr1_4:17060312-17060331 | Msa0153600:intron | 30.0% | |
| TATCCCTTAAACTTCCAAAT+GGG | - | chr1_4:17060313-17060332 | Msa0153600:intron | 30.0% | |
| ! | ATGGTATTTGGCTTCAAAAT+TGG | - | chr1_4:17060370-17060389 | Msa0153600:intron | 30.0% |
| AAACTAAAAGATCTCCACAT+CGG | + | chr1_4:17060416-17060435 | None:intergenic | 30.0% | |
| !! | TTAGTTTTCCAATACAAAGG+AGG | - | chr1_4:17060429-17060448 | Msa0153600:intron | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | - | chr1_4:17060430-17060449 | Msa0153600:intron | 30.0% |
| TATTCAAGTATGAGATGCAA+CGG | - | chr1_4:17060501-17060520 | Msa0153600:intron | 30.0% | |
| !! | TTAGTATTTTCAGTGTCACT+AGG | + | chr1_4:17060600-17060619 | None:intergenic | 30.0% |
| ! | TTGATTCTCTTTTTCTTGAG+GGG | + | chr1_4:17060627-17060646 | None:intergenic | 30.0% |
| ! | CTTACCTGAAACTTTTTGTT+GGG | + | chr1_4:17060727-17060746 | None:intergenic | 30.0% |
| ! | ACTTACCTGAAACTTTTTGT+TGG | + | chr1_4:17060728-17060747 | None:intergenic | 30.0% |
| ! | CCAAAATTTGAGATGAACTA+AGG | + | chr1_4:17060810-17060829 | None:intergenic | 30.0% |
| ! | CCTTAGTTCATCTCAAATTT+TGG | - | chr1_4:17060807-17060826 | Msa0153600:CDS | 30.0% |
| ATAATATGAGAGTGAAGCTA+GGG | + | chr1_4:17061118-17061137 | None:intergenic | 30.0% | |
| AATAATATGAGAGTGAAGCT+AGG | + | chr1_4:17061119-17061138 | None:intergenic | 30.0% | |
| TTATTGCCATATCATGTTGA+AGG | - | chr1_4:17061134-17061153 | Msa0153600:intron | 30.0% | |
| TTATCACCTTCAACATGATA+TGG | + | chr1_4:17061143-17061162 | None:intergenic | 30.0% | |
| TGTTGAAGGTGATAATAGAT+TGG | - | chr1_4:17061148-17061167 | Msa0153600:intron | 30.0% | |
| ACTATACGAACTGATTGTAT+TGG | - | chr1_4:17061241-17061260 | Msa0153600:intron | 30.0% | |
| TTAACTATATGTACTGTGCA+AGG | + | chr1_4:17061499-17061518 | None:intergenic | 30.0% | |
| ATTTAGGTATCATCTGTTTC+AGG | + | chr1_4:17061545-17061564 | None:intergenic | 30.0% | |
| TGAAACAGATGATACCTAAA+TGG | - | chr1_4:17061544-17061563 | Msa0153600:intron | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | - | chr1_4:17061579-17061598 | Msa0153600:intron | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | - | chr1_4:17061580-17061599 | Msa0153600:intron | 30.0% | |
| ! | ATCCAGAATAAGTTTTCGAA+TGG | - | chr1_4:17061668-17061687 | Msa0153600:intron | 30.0% |
| ! | TCCAGAATAAGTTTTCGAAT+GGG | - | chr1_4:17061669-17061688 | Msa0153600:intron | 30.0% |
| AACGCAATAAAATAGAGCTT+GGG | + | chr1_4:17062051-17062070 | None:intergenic | 30.0% | |
| ! | AGTATTTGTTACGGTTATGT+CGG | + | chr1_4:17062140-17062159 | None:intergenic | 30.0% |
| ! | CGTTGAACAAGTATTTGTTA+CGG | + | chr1_4:17062149-17062168 | None:intergenic | 30.0% |
| CGTAACAAATACTTGTTCAA+CGG | - | chr1_4:17062147-17062166 | Msa0153600:CDS | 30.0% | |
| AAACAACAGTAATAAGTGGA+CGG | + | chr1_4:17062276-17062295 | None:intergenic | 30.0% | |
| ACACAAACAACAGTAATAAG+TGG | + | chr1_4:17062280-17062299 | None:intergenic | 30.0% | |
| GAGATATGAAAAGCCAAAAA+AGG | + | chr1_4:17062433-17062452 | None:intergenic | 30.0% | |
| ! | TGAGATTTTATGACAGTAAG+GGG | + | chr1_4:17062803-17062822 | None:intergenic | 30.0% |
| ! | CATGAGATTTTATGACAGTA+AGG | + | chr1_4:17062805-17062824 | None:intergenic | 30.0% |
| GTCATAAAATCTCATGATGA+AGG | - | chr1_4:17062809-17062828 | Msa0153600:intron | 30.0% | |
| AATCTCATGATGAAGGATAA+TGG | - | chr1_4:17062816-17062835 | Msa0153600:intron | 30.0% | |
| ! | GATAGATGATAGTGTGTTTA+AGG | - | chr1_4:17062912-17062931 | Msa0153600:intron | 30.0% |
| ! | GCATATTCCATATCTTTTAC+GGG | + | chr1_4:17063328-17063347 | None:intergenic | 30.0% |
| ! | CGCATATTCCATATCTTTTA+CGG | + | chr1_4:17063329-17063348 | None:intergenic | 30.0% |
| CGTAAAAGATATGGAATATG+CGG | - | chr1_4:17063327-17063346 | Msa0153600:intron | 30.0% | |
| GTAAAAGATATGGAATATGC+GGG | - | chr1_4:17063328-17063347 | Msa0153600:intron | 30.0% | |
| !! | ATTTTGGAGATGGAATTTCA+AGG | - | chr1_4:17063353-17063372 | Msa0153600:intron | 30.0% |
| !! | CACAAAAACACATGGTTTTA+GGG | - | chr1_4:17063381-17063400 | Msa0153600:intron | 30.0% |
| !!! | ACAAAAACACATGGTTTTAG+GGG | - | chr1_4:17063382-17063401 | Msa0153600:intron | 30.0% |
| ! | AAGAAGCATGGTATATTTAG+TGG | - | chr1_4:17063664-17063683 | Msa0153600:intron | 30.0% |
| TATAATGAACATCTCGACTA+TGG | - | chr1_4:17063739-17063758 | Msa0153600:intron | 30.0% | |
| ATAATGAACATCTCGACTAT+GGG | - | chr1_4:17063740-17063759 | Msa0153600:intron | 30.0% | |
| ! | ATGTCGTTTCAACAACAACA+CGG | - | chr1_4:17058670-17058689 | Msa0153600:CDS | 35.0% |
| TCATCAAAACAGTGAGTGTT+GGG | + | chr1_4:17058884-17058903 | None:intergenic | 35.0% | |
| TTCATCAAAACAGTGAGTGT+TGG | + | chr1_4:17058885-17058904 | None:intergenic | 35.0% | |
| GCTCGATTACTTTGTATGAT+AGG | - | chr1_4:17059038-17059057 | Msa0153600:intron | 35.0% | |
| TTGTATTCAAAACCCTAGAG+AGG | - | chr1_4:17059080-17059099 | Msa0153600:intron | 35.0% | |
| GACCTCAACATAAGATAATG+AGG | - | chr1_4:17059140-17059159 | Msa0153600:CDS | 35.0% | |
| ACCCTCATTATCTTATGTTG+AGG | + | chr1_4:17059145-17059164 | None:intergenic | 35.0% | |
| AAGATAATGAGGGTTTCTGT+TGG | - | chr1_4:17059151-17059170 | Msa0153600:CDS | 35.0% | |
| CATGAAAGAGGATAGTATTG+AGG | - | chr1_4:17059309-17059328 | Msa0153600:intron | 35.0% | |
| ! | TGAAAGAGGATAGTATTGAG+GGG | - | chr1_4:17059311-17059330 | Msa0153600:intron | 35.0% |
| GGGGATTTATGATACATTGA+AGG | - | chr1_4:17059330-17059349 | Msa0153600:intron | 35.0% | |
| TCATTAGTAAATCTGCTGGA+GGG | - | chr1_4:17059362-17059381 | Msa0153600:intron | 35.0% | |
| AGTTACATTCAGGGAACAAA+TGG | - | chr1_4:17059421-17059440 | Msa0153600:intron | 35.0% | |
| GCATGTTATGTTGATCAGAA+AGG | - | chr1_4:17059490-17059509 | Msa0153600:intron | 35.0% | |
| TCAACTATATCAGCATGTCA+TGG | + | chr1_4:17059538-17059557 | None:intergenic | 35.0% | |
| ! | TGCTGATATAGTTGACGTTT+TGG | - | chr1_4:17059543-17059562 | Msa0153600:intron | 35.0% |
| ACTCTTTCCATAAAGAGATC+AGG | + | chr1_4:17059634-17059653 | None:intergenic | 35.0% | |
| TACACTCAGTATGAAAAAGC+AGG | - | chr1_4:17059739-17059758 | Msa0153600:intron | 35.0% | |
| TTGAAGTCACAGATAGAAAC+TGG | - | chr1_4:17059808-17059827 | Msa0153600:intron | 35.0% | |
| ! | GCATCCTTAAAAAGCATGTA+AGG | + | chr1_4:17059838-17059857 | None:intergenic | 35.0% |
| TCTATGTGTATTGTTTGCTC+AGG | - | chr1_4:17060052-17060071 | Msa0153600:intron | 35.0% | |
| ATTGTTTGCTCAGGTATTAC+TGG | - | chr1_4:17060061-17060080 | Msa0153600:intron | 35.0% | |
| !! | CAGACTTTTAGGTGGAAAAA+TGG | + | chr1_4:17060168-17060187 | None:intergenic | 35.0% |
| ! | TTCCGAGAAATTTTGTAGAG+AGG | - | chr1_4:17060265-17060284 | Msa0153600:intron | 35.0% |
| AGACCCATTTGGAAGTTTAA+GGG | + | chr1_4:17060319-17060338 | None:intergenic | 35.0% | |
| ! | TTTGGCTTCAAAATTGGAAG+AGG | - | chr1_4:17060376-17060395 | Msa0153600:intron | 35.0% |
| AAAATTGGAAGAGGTTTGCA+TGG | - | chr1_4:17060385-17060404 | Msa0153600:intron | 35.0% | |
| ! | TAAAGTTTTGCAGAGGCTAA+TGG | - | chr1_4:17061008-17061027 | Msa0153600:intron | 35.0% |
| AACTAGCAGAAGAGACATTT+AGG | - | chr1_4:17061428-17061447 | Msa0153600:CDS | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | - | chr1_4:17061603-17061622 | Msa0153600:intron | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | - | chr1_4:17061608-17061627 | Msa0153600:intron | 35.0% |
| TCCCATTCGAAAACTTATTC+TGG | + | chr1_4:17061673-17061692 | None:intergenic | 35.0% | |
| ! | ATAAGTTTTCGAATGGGAAG+TGG | - | chr1_4:17061675-17061694 | Msa0153600:intron | 35.0% |
| ATAGCAATCGTGAATGAAAG+TGG | + | chr1_4:17061774-17061793 | None:intergenic | 35.0% | |
| ACGCAATAAAATAGAGCTTG+GGG | + | chr1_4:17062050-17062069 | None:intergenic | 35.0% | |
| CAACGCAATAAAATAGAGCT+TGG | + | chr1_4:17062052-17062071 | None:intergenic | 35.0% | |
| ! | CAAGCTCTATTTTATTGCGT+TGG | - | chr1_4:17062050-17062069 | Msa0153600:CDS | 35.0% |
| ACAAATACTTGTTCAACGGT+CGG | - | chr1_4:17062151-17062170 | Msa0153600:CDS | 35.0% | |
| TGAGACAAATCAGTTTCACA+TGG | - | chr1_4:17062198-17062217 | Msa0153600:CDS | 35.0% | |
| CAAATCAGTTTCACATGGTT+TGG | - | chr1_4:17062203-17062222 | Msa0153600:CDS | 35.0% | |
| TTCTGTCAAAATGGAATGAG+CGG | - | chr1_4:17062241-17062260 | Msa0153600:CDS | 35.0% | |
| AACAACAGTAATAAGTGGAC+GGG | + | chr1_4:17062275-17062294 | None:intergenic | 35.0% | |
| AGAGAGAAGAAACAATCACA+GGG | - | chr1_4:17062541-17062560 | Msa0153600:intron | 35.0% | |
| TCTGATCTACAGATGTTCTT+CGG | - | chr1_4:17062732-17062751 | Msa0153600:intron | 35.0% | |
| ! | TCATGATGAAGGATAATGGT+GGG | - | chr1_4:17062820-17062839 | Msa0153600:intron | 35.0% |
| CTAAAAGTGATATATCTGCG+AGG | - | chr1_4:17063144-17063163 | Msa0153600:intron | 35.0% | |
| !! | GTGTTGTCTTTGATTTGTCT+TGG | + | chr1_4:17063306-17063325 | None:intergenic | 35.0% |
| ! | GCACAAAAACACATGGTTTT+AGG | - | chr1_4:17063380-17063399 | Msa0153600:intron | 35.0% |
| CACACACATAGCTATATACA+TGG | + | chr1_4:17063582-17063601 | None:intergenic | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+TGG | - | chr1_4:17063793-17063812 | Msa0153600:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | - | chr1_4:17063843-17063862 | Msa0153600:exon | 35.0% | |
| TTTCAACAACAACACGGCAA+CGG | - | chr1_4:17058676-17058695 | Msa0153600:CDS | 40.0% | |
| ! | AGAAACACAACACACGCTTT+TGG | - | chr1_4:17058790-17058809 | Msa0153600:CDS | 40.0% |
| !! | ATCAAAACAGTGAGTGTTGG+GGG | + | chr1_4:17058882-17058901 | None:intergenic | 40.0% |
| ! | CATCAAAACAGTGAGTGTTG+GGG | + | chr1_4:17058883-17058902 | None:intergenic | 40.0% |
| CAACAGATAAGACCTCTCTA+GGG | + | chr1_4:17059095-17059114 | None:intergenic | 40.0% | |
| TCAACAGATAAGACCTCTCT+AGG | + | chr1_4:17059096-17059115 | None:intergenic | 40.0% | |
| TCTGTTGAAAGTTGAAGGAG+TGG | - | chr1_4:17059108-17059127 | Msa0153600:intron | 40.0% | |
| GAAAGTTGAAGGAGTGGTTA+TGG | - | chr1_4:17059114-17059133 | Msa0153600:intron | 40.0% | |
| GGTTTCTGTTGGAATTCACA+AGG | - | chr1_4:17059162-17059181 | Msa0153600:CDS | 40.0% | |
| AAGAAGCAACTACTCAACTG+AGG | + | chr1_4:17059283-17059302 | None:intergenic | 40.0% | |
| CTTCTTAGTGTGCATGAAAG+AGG | - | chr1_4:17059297-17059316 | Msa0153600:intron | 40.0% | |
| GCTGTCATTAGTAAATCTGC+TGG | - | chr1_4:17059358-17059377 | Msa0153600:intron | 40.0% | |
| GTCATTAGTAAATCTGCTGG+AGG | - | chr1_4:17059361-17059380 | Msa0153600:intron | 40.0% | |
| TCCCTGAATGTAACTACCAT+GGG | + | chr1_4:17059416-17059435 | None:intergenic | 40.0% | |
| TTCCCTGAATGTAACTACCA+TGG | + | chr1_4:17059417-17059436 | None:intergenic | 40.0% | |
| GGAACAAATGGAACGTCTAA+TGG | - | chr1_4:17059433-17059452 | Msa0153600:intron | 40.0% | |
| TGGAAAGAGTTCAGAGCAAT+TGG | - | chr1_4:17059644-17059663 | Msa0153600:intron | 40.0% | |
| GGAAAGAGTTCAGAGCAATT+GGG | - | chr1_4:17059645-17059664 | Msa0153600:intron | 40.0% | |
| AAAAGCAACCAGCAGAATCT+GGG | - | chr1_4:17059868-17059887 | Msa0153600:intron | 40.0% | |
| AAGTCATCAAATCTGTGCAC+TGG | - | chr1_4:17059898-17059917 | Msa0153600:intron | 40.0% | |
| AGTCATCAAATCTGTGCACT+GGG | - | chr1_4:17059899-17059918 | Msa0153600:intron | 40.0% | |
| ! | TTTTACACAGCAGTCTCTGT+TGG | + | chr1_4:17059943-17059962 | None:intergenic | 40.0% |
| ! | GATAGGGAGTGTATTGAACT+TGG | - | chr1_4:17060100-17060119 | Msa0153600:intron | 40.0% |
| TCGAACTAAGCAAGCATACT+TGG | + | chr1_4:17060208-17060227 | None:intergenic | 40.0% | |
| CAGACCCATTTGGAAGTTTA+AGG | + | chr1_4:17060320-17060339 | None:intergenic | 40.0% | |
| GTCTGCGTGCAAAATGAATT+GGG | - | chr1_4:17060335-17060354 | Msa0153600:intron | 40.0% | |
| TGCAATGCAGTGATGGTATT+TGG | - | chr1_4:17060358-17060377 | Msa0153600:intron | 40.0% | |
| AATCTGACCCTCCTTTGTAT+TGG | + | chr1_4:17060440-17060459 | None:intergenic | 40.0% | |
| TTGTGAATGTTACTCCCTTG+AGG | + | chr1_4:17060681-17060700 | None:intergenic | 40.0% | |
| GCAACCCAACAAAAAGTTTC+AGG | - | chr1_4:17060720-17060739 | Msa0153600:CDS | 40.0% | |
| ! | GTATCATCTGTTTCAGGTCA+TGG | + | chr1_4:17061539-17061558 | None:intergenic | 40.0% |
| GAATGAGTTATTGCAAGGGA+AGG | - | chr1_4:17061584-17061603 | Msa0153600:intron | 40.0% | |
| !! | AATTAGAAGTGTTGGTGAGG+AGG | - | chr1_4:17061611-17061630 | Msa0153600:intron | 40.0% |
| !! | GTGGTTGGAAGTCATTTTCA+CGG | - | chr1_4:17061694-17061713 | Msa0153600:intron | 40.0% |
| !! | TGGTTGGAAGTCATTTTCAC+GGG | - | chr1_4:17061695-17061714 | Msa0153600:intron | 40.0% |
| TGCTATCATCTCAACCACAA+AGG | - | chr1_4:17061788-17061807 | Msa0153600:CDS | 40.0% | |
| CAATACCTTGAAACTTCTCC+GGG | + | chr1_4:17061821-17061840 | None:intergenic | 40.0% | |
| GCAATACCTTGAAACTTCTC+CGG | + | chr1_4:17061822-17061841 | None:intergenic | 40.0% | |
| CGCAATAAAATAGAGCTTGG+GGG | + | chr1_4:17062049-17062068 | None:intergenic | 40.0% | |
| GTTACGGTTATGTCGGATTT+CGG | + | chr1_4:17062133-17062152 | None:intergenic | 40.0% | |
| ! | CAGTTTCACATGGTTTGGAA+CGG | - | chr1_4:17062208-17062227 | Msa0153600:CDS | 40.0% |
| CATACATTGGACAGTGTGTA+GGG | + | chr1_4:17062363-17062382 | None:intergenic | 40.0% | |
| ACATACATTGGACAGTGTGT+AGG | + | chr1_4:17062364-17062383 | None:intergenic | 40.0% | |
| ! | GTTTGATGGCACACATACAT+TGG | + | chr1_4:17062376-17062395 | None:intergenic | 40.0% |
| ATGTATGTGTGCCATCAAAC+AGG | - | chr1_4:17062376-17062395 | Msa0153600:intron | 40.0% | |
| TGTATGTGTGCCATCAAACA+GGG | - | chr1_4:17062377-17062396 | Msa0153600:intron | 40.0% | |
| ! | TTGTTTCTTCTCTCTGGTAG+TGG | + | chr1_4:17062536-17062555 | None:intergenic | 40.0% |
| ! | CTGTGATTGTTTCTTCTCTC+TGG | + | chr1_4:17062542-17062561 | None:intergenic | 40.0% |
| CAGAGAGAAGAAACAATCAC+AGG | - | chr1_4:17062540-17062559 | Msa0153600:intron | 40.0% | |
| GAGATGAGAGATATACAGAG+AGG | - | chr1_4:17062582-17062601 | Msa0153600:intron | 40.0% | |
| ! | CTCATGATGAAGGATAATGG+TGG | - | chr1_4:17062819-17062838 | Msa0153600:intron | 40.0% |
| GTTGTGGGTAGTGTAAATTG+TGG | - | chr1_4:17062842-17062861 | Msa0153600:intron | 40.0% | |
| AGGGATCTACTGAAGAAGTT+GGG | + | chr1_4:17063247-17063266 | None:intergenic | 40.0% | |
| ACAAGTCCACAAACTTCTCA+GGG | + | chr1_4:17063266-17063285 | None:intergenic | 40.0% | |
| !! | TTGATTTGTCTTGGACTCCT+TGG | + | chr1_4:17063297-17063316 | None:intergenic | 40.0% |
| GACAACACCCGTAAAAGATA+TGG | - | chr1_4:17063318-17063337 | Msa0153600:intron | 40.0% | |
| ! | ATGGAATATGCGGGCAATTT+TGG | - | chr1_4:17063337-17063356 | Msa0153600:intron | 40.0% |
| TACTGCAGATTCTGTAAGTC+TGG | - | chr1_4:17063487-17063506 | Msa0153600:intron | 40.0% | |
| ACTGCAGATTCTGTAAGTCT+GGG | - | chr1_4:17063488-17063507 | Msa0153600:intron | 40.0% | |
| GGGTTTACATGAGATGTTCA+AGG | - | chr1_4:17063508-17063527 | Msa0153600:intron | 40.0% | |
| AATTCAGTGGAGTTGAGAGT+AGG | - | chr1_4:17063688-17063707 | Msa0153600:intron | 40.0% | |
| ATTCAGTGGAGTTGAGAGTA+GGG | - | chr1_4:17063689-17063708 | Msa0153600:intron | 40.0% | |
| TTGAAGCTCGCGTTGTTGAA+CGG | + | chr1_4:17058755-17058774 | None:intergenic | 45.0% | |
| ! | TCTCCTACACTTTTCAACGC+TGG | - | chr1_4:17059247-17059266 | Msa0153600:intron | 45.0% |
| ! | GTTCCAGCGTTGAAAAGTGT+AGG | + | chr1_4:17059253-17059272 | None:intergenic | 45.0% |
| ! | TTTTCAACGCTGGAACACCT+AGG | - | chr1_4:17059257-17059276 | Msa0153600:intron | 45.0% |
| AGTAAATCTGCTGGAGGGAT+TGG | - | chr1_4:17059367-17059386 | Msa0153600:intron | 45.0% | |
| TGCCCATGGTAGTTACATTC+AGG | - | chr1_4:17059411-17059430 | Msa0153600:intron | 45.0% | |
| GCCCATGGTAGTTACATTCA+GGG | - | chr1_4:17059412-17059431 | Msa0153600:intron | 45.0% | |
| TGATTGAACACACGCAGCAT+TGG | + | chr1_4:17059466-17059485 | None:intergenic | 45.0% | |
| AAAGAGATCAGGCACCCAAA+GGG | + | chr1_4:17059623-17059642 | None:intergenic | 45.0% | |
| TAAAGAGATCAGGCACCCAA+AGG | + | chr1_4:17059624-17059643 | None:intergenic | 45.0% | |
| TTGGGTGCCTGATCTCTTTA+TGG | - | chr1_4:17059624-17059643 | Msa0153600:intron | 45.0% | |
| GAGTTCAGAGCAATTGGGAA+TGG | - | chr1_4:17059650-17059669 | Msa0153600:intron | 45.0% | |
| TGCTTCATTGGGACAGAACA+GGG | + | chr1_4:17059677-17059696 | None:intergenic | 45.0% | |
| !! | ACCTGGTTTGGCAGATTGTT+GGG | - | chr1_4:17059696-17059715 | Msa0153600:intron | 45.0% |
| GAAAAGCAACCAGCAGAATC+TGG | - | chr1_4:17059867-17059886 | Msa0153600:intron | 45.0% | |
| TAATTGTGCCCAGATTCTGC+TGG | + | chr1_4:17059879-17059898 | None:intergenic | 45.0% | |
| ! | ATTTTGCACGCAGACCCATT+TGG | + | chr1_4:17060330-17060349 | None:intergenic | 45.0% |
| GGTCTGCGTGCAAAATGAAT+TGG | - | chr1_4:17060334-17060353 | Msa0153600:intron | 45.0% | |
| AATTGGGTGCAATGCAGTGA+TGG | - | chr1_4:17060351-17060370 | Msa0153600:intron | 45.0% | |
| TAATGGAAACACAGGAGGCA+TGG | - | chr1_4:17061025-17061044 | Msa0153600:intron | 45.0% | |
| ! | AATGGAAACACAGGAGGCAT+GGG | - | chr1_4:17061026-17061045 | Msa0153600:intron | 45.0% |
| GTGAAGCTAGGGTTCTCATT+GGG | + | chr1_4:17061107-17061126 | None:intergenic | 45.0% | |
| AGTGAAGCTAGGGTTCTCAT+TGG | + | chr1_4:17061108-17061127 | None:intergenic | 45.0% | |
| TGAAAGCCTCTCACACAGTT+GGG | + | chr1_4:17061217-17061236 | None:intergenic | 45.0% | |
| ATGAAAGCCTCTCACACAGT+TGG | + | chr1_4:17061218-17061237 | None:intergenic | 45.0% | |
| TTGGTGAGGAGGATAGAACA+TGG | - | chr1_4:17061622-17061641 | Msa0153600:intron | 45.0% | |
| ! | GTTTTCGAATGGGAAGTGGT+TGG | - | chr1_4:17061679-17061698 | Msa0153600:intron | 45.0% |
| ! | CGGGAACATAACTTGCAAGT+CGG | - | chr1_4:17061714-17061733 | Msa0153600:intron | 45.0% |
| CATCTCAACCACAAAGGAAC+CGG | - | chr1_4:17061794-17061813 | Msa0153600:CDS | 45.0% | |
| ATCTCAACCACAAAGGAACC+GGG | - | chr1_4:17061795-17061814 | Msa0153600:CDS | 45.0% | |
| CGAAAGCGGTTCTGTCAAAA+TGG | - | chr1_4:17062232-17062251 | Msa0153600:CDS | 45.0% | |
| TCAAGACACACCCTGTTTGA+TGG | + | chr1_4:17062390-17062409 | None:intergenic | 45.0% | |
| !! | TTCTTCTCTCTGGTAGTGGT+GGG | + | chr1_4:17062532-17062551 | None:intergenic | 45.0% |
| !! | TTTCTTCTCTCTGGTAGTGG+TGG | + | chr1_4:17062533-17062552 | None:intergenic | 45.0% |
| ! | TGACGGGTCTAACGGAATAA+CGG | + | chr1_4:17062668-17062687 | None:intergenic | 45.0% |
| GACCGTTTCAACGTCAGTTT+CGG | + | chr1_4:17062695-17062714 | None:intergenic | 45.0% | |
| GAAACTGACGTTGAAACGGT+CGG | - | chr1_4:17062694-17062713 | Msa0153600:intron | 45.0% | |
| AAACTGACGTTGAAACGGTC+GGG | - | chr1_4:17062695-17062714 | Msa0153600:intron | 45.0% | |
| TTCTTCGGTGAGCAGTTGTT+GGG | - | chr1_4:17062747-17062766 | Msa0153600:intron | 45.0% | |
| !! | TGAAGGATAATGGTGGGTTG+TGG | - | chr1_4:17062826-17062845 | Msa0153600:intron | 45.0% |
| !! | GAAGGATAATGGTGGGTTGT+GGG | - | chr1_4:17062827-17062846 | Msa0153600:intron | 45.0% |
| GGGATCTACTGAAGAAGTTG+GGG | + | chr1_4:17063246-17063265 | None:intergenic | 45.0% | |
| CAGGGATCTACTGAAGAAGT+TGG | + | chr1_4:17063248-17063267 | None:intergenic | 45.0% | |
| GTAGATCCCTGAGAAGTTTG+TGG | - | chr1_4:17063257-17063276 | Msa0153600:intron | 45.0% | |
| CACAAGTCCACAAACTTCTC+AGG | + | chr1_4:17063267-17063286 | None:intergenic | 45.0% | |
| TGGACTTGTGCAGAAAACCA+AGG | - | chr1_4:17063277-17063296 | Msa0153600:intron | 45.0% | |
| !! | TATGCGGGCAATTTTGGAGA+TGG | - | chr1_4:17063343-17063362 | Msa0153600:intron | 45.0% |
| AGGAGCTGCACAAAAACACA+TGG | - | chr1_4:17063373-17063392 | Msa0153600:intron | 45.0% | |
| TGCTTCTTCAACAGCTCACT+TGG | + | chr1_4:17063652-17063671 | None:intergenic | 45.0% | |
| AGTGAGCTGTTGAAGAAGCA+TGG | - | chr1_4:17063652-17063671 | Msa0153600:intron | 45.0% | |
| TTCAGTGGAGTTGAGAGTAG+GGG | - | chr1_4:17063690-17063709 | Msa0153600:intron | 45.0% | |
| ! | GGAAGGAACATGGTTTGTAG+AGG | - | chr1_4:17063711-17063730 | Msa0153600:intron | 45.0% |
| ATGAACATCTCGACTATGGG+TGG | - | chr1_4:17063743-17063762 | Msa0153600:CDS | 45.0% | |
| GACTATGGGTGGTTCACTAA+AGG | - | chr1_4:17063754-17063773 | Msa0153600:CDS | 45.0% | |
| GCAACGGCGGCATTTACAAT+GGG | - | chr1_4:17058692-17058711 | Msa0153600:CDS | 50.0% | |
| CAACTACTCAACTGAGGCCT+AGG | + | chr1_4:17059277-17059296 | None:intergenic | 50.0% | |
| GTTCACAACATACGTGCCCA+TGG | - | chr1_4:17059397-17059416 | Msa0153600:intron | 50.0% | |
| !! | AGGTGCTTTTGCTGTGTACC+TGG | - | chr1_4:17059510-17059529 | Msa0153600:intron | 50.0% |
| TATCAGCATGTCATGGCTCC+AGG | + | chr1_4:17059531-17059550 | None:intergenic | 50.0% | |
| GTGCTTCATTGGGACAGAAC+AGG | + | chr1_4:17059678-17059697 | None:intergenic | 50.0% | |
| ! | TTCTGTCCCAATGAAGCACC+TGG | - | chr1_4:17059679-17059698 | Msa0153600:intron | 50.0% |
| ! | TCCCAATGAAGCACCTGGTT+TGG | - | chr1_4:17059684-17059703 | Msa0153600:intron | 50.0% |
| GCCAAACCAGGTGCTTCATT+GGG | + | chr1_4:17059688-17059707 | None:intergenic | 50.0% | |
| TGCCAAACCAGGTGCTTCAT+TGG | + | chr1_4:17059689-17059708 | None:intergenic | 50.0% | |
| !! | CACCTGGTTTGGCAGATTGT+TGG | - | chr1_4:17059695-17059714 | Msa0153600:intron | 50.0% |
| ACCCAACAATCTGCCAAACC+AGG | + | chr1_4:17059700-17059719 | None:intergenic | 50.0% | |
| TTGTTCAAGCACGGAGTCTG+TGG | - | chr1_4:17059776-17059795 | Msa0153600:intron | 50.0% | |
| ACTACTGCTGCTACACCTCA+AGG | - | chr1_4:17060663-17060682 | Msa0153600:intron | 50.0% | |
| CTACTGCTGCTACACCTCAA+GGG | - | chr1_4:17060664-17060683 | Msa0153600:intron | 50.0% | |
| GCAGAGGCTAATGGAAACAC+AGG | - | chr1_4:17061017-17061036 | Msa0153600:intron | 50.0% | |
| GAGGCTAATGGAAACACAGG+AGG | - | chr1_4:17061020-17061039 | Msa0153600:intron | 50.0% | |
| TTTGTGCCCAACTGTGTGAG+AGG | - | chr1_4:17061208-17061227 | Msa0153600:intron | 50.0% | |
| CGGTTATGTCGGATTTCGGT+CGG | + | chr1_4:17062129-17062148 | None:intergenic | 50.0% | |
| ! | TGGTTTGGAACGGACGAAAG+CGG | - | chr1_4:17062218-17062237 | Msa0153600:CDS | 50.0% |
| !! | GGTCTAACGGAATAACGGGT+GGG | + | chr1_4:17062663-17062682 | None:intergenic | 50.0% |
| GACGGGTCTAACGGAATAAC+GGG | + | chr1_4:17062667-17062686 | None:intergenic | 50.0% | |
| CGTTTCAACGTCAGTTTCGG+CGG | + | chr1_4:17062692-17062711 | None:intergenic | 50.0% | |
| CGCCGAAACTGACGTTGAAA+CGG | - | chr1_4:17062690-17062709 | Msa0153600:intron | 50.0% | |
| GTTCTTCGGTGAGCAGTTGT+TGG | - | chr1_4:17062746-17062765 | Msa0153600:intron | 50.0% | |
| GTGTGTAGAGTGTGTGTTCG+TGG | - | chr1_4:17062937-17062956 | Msa0153600:intron | 50.0% | |
| TGAGAGTAGGGGAAGGAACA+TGG | - | chr1_4:17063701-17063720 | Msa0153600:intron | 50.0% | |
| ATGGGTGGTTCACTAAAGGC+TGG | - | chr1_4:17063758-17063777 | Msa0153600:CDS | 50.0% | |
| CAACAACAACACGGCAACGG+CGG | - | chr1_4:17058679-17058698 | Msa0153600:CDS | 55.0% | |
| GGCAACGGCGGCATTTACAA+TGG | - | chr1_4:17058691-17058710 | Msa0153600:CDS | 55.0% | |
| TTTGCATGGTCGCTCCGATG+TGG | - | chr1_4:17060399-17060418 | Msa0153600:intron | 55.0% | |
| !! | AGCTTGGGGGACTAGCTGAA+GGG | + | chr1_4:17062036-17062055 | None:intergenic | 55.0% |
| GGTCGGATGTGTACGAGCTT+CGG | - | chr1_4:17062168-17062187 | Msa0153600:CDS | 55.0% | |
| TACAACCGAGCCAAACCACC+CGG | - | chr1_4:17062637-17062656 | Msa0153600:intron | 55.0% | |
| !! | TAACGGAATAACGGGTGGGC+CGG | + | chr1_4:17062659-17062678 | None:intergenic | 55.0% |
| ! | GGGTCTAACGGAATAACGGG+TGG | + | chr1_4:17062664-17062683 | None:intergenic | 55.0% |
| ACGTCAGTTTCGGCGGTTGA+CGG | + | chr1_4:17062685-17062704 | None:intergenic | 55.0% | |
| GACGTTGAAACGGTCGGGAA+TGG | - | chr1_4:17062700-17062719 | Msa0153600:intron | 55.0% | |
| TGACAGTAAGGGGTGAGCAC+CGG | + | chr1_4:17062793-17062812 | None:intergenic | 55.0% | |
| GTGGAGTTGAGAGTAGGGGA+AGG | - | chr1_4:17063694-17063713 | Msa0153600:intron | 55.0% | |
| GGCGGCATTTACAATGGGCG+TGG | - | chr1_4:17058697-17058716 | Msa0153600:CDS | 60.0% | |
| ! | GGGCGTGGTAGTGAAGCTCA+AGG | - | chr1_4:17058712-17058731 | Msa0153600:CDS | 60.0% |
| AACCACAAAGGAACCGGGCC+CGG | - | chr1_4:17061800-17061819 | Msa0153600:CDS | 60.0% | |
| CCTTGAAACTTCTCCGGGCC+CGG | + | chr1_4:17061816-17061835 | None:intergenic | 60.0% | |
| !! | GAGCTTGGGGGACTAGCTGA+AGG | + | chr1_4:17062037-17062056 | None:intergenic | 60.0% |
| !! | AACGGAATAACGGGTGGGCC+GGG | + | chr1_4:17062658-17062677 | None:intergenic | 60.0% |
| ! | TCGGCGGTTGACGGGTCTAA+CGG | + | chr1_4:17062676-17062695 | None:intergenic | 60.0% |
| CGTCAGTTTCGGCGGTTGAC+GGG | + | chr1_4:17062684-17062703 | None:intergenic | 60.0% | |
| CAAATCCGCCCGTAACCGAC+CGG | - | chr1_4:17062771-17062790 | Msa0153600:intron | 60.0% | |
| !! | AGTAAGGGGTGAGCACCGGT+CGG | + | chr1_4:17062789-17062808 | None:intergenic | 60.0% |
| CCGGGCCCGGAGAAGTTTCA+AGG | - | chr1_4:17061813-17061832 | Msa0153600:CDS | 65.0% | |
| TCTCACACTTCACGCGCGCG+TGG | + | chr1_4:17062314-17062333 | None:intergenic | 65.0% | |
| ! | CGGTCGGTTACGGGCGGATT+TGG | + | chr1_4:17062773-17062792 | None:intergenic | 65.0% |
| !! | GGTGAGCACCGGTCGGTTAC+GGG | + | chr1_4:17062782-17062801 | None:intergenic | 65.0% |
| !! | GGGTGAGCACCGGTCGGTTA+CGG | + | chr1_4:17062783-17062802 | None:intergenic | 65.0% |
| CTCCGGGCCCGGTTCCTTTG+TGG | + | chr1_4:17061805-17061824 | None:intergenic | 70.0% | |
| ! | GTGGGCCGGGTGGTTTGGCT+CGG | + | chr1_4:17062645-17062664 | None:intergenic | 70.0% |
| AACGGGTGGGCCGGGTGGTT+TGG | + | chr1_4:17062650-17062669 | None:intergenic | 70.0% | |
| !! | GGAATAACGGGTGGGCCGGG+TGG | + | chr1_4:17062655-17062674 | None:intergenic | 70.0% |
| !! | GAGCACCGGTCGGTTACGGG+CGG | + | chr1_4:17062779-17062798 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 17058653 | 17063876 | 17058653 | ID=Msa0153600;Name=Msa0153600 |
| chr1_4 | mRNA | 17058653 | 17063876 | 17058653 | ID=Msa0153600-mRNA-1;Parent=Msa0153600;Name=Msa0153600-mRNA-1;_AED=0.13;_eAED=0.14;_QI=17|0|0|1|0.71|0.75|8|0|453 |
| chr1_4 | exon | 17063743 | 17063876 | 17063743 | ID=Msa0153600-mRNA-1:exon:6534;Parent=Msa0153600-mRNA-1 |
| chr1_4 | exon | 17062046 | 17062268 | 17062046 | ID=Msa0153600-mRNA-1:exon:6533;Parent=Msa0153600-mRNA-1 |
| chr1_4 | exon | 17061788 | 17062036 | 17061788 | ID=Msa0153600-mRNA-1:exon:6532;Parent=Msa0153600-mRNA-1 |
| chr1_4 | exon | 17061381 | 17061508 | 17061381 | ID=Msa0153600-mRNA-1:exon:6531;Parent=Msa0153600-mRNA-1 |
| chr1_4 | exon | 17060695 | 17060923 | 17060695 | ID=Msa0153600-mRNA-1:exon:6530;Parent=Msa0153600-mRNA-1 |
| chr1_4 | exon | 17059126 | 17059239 | 17059126 | ID=Msa0153600-mRNA-1:exon:6529;Parent=Msa0153600-mRNA-1 |
| chr1_4 | exon | 17058976 | 17059034 | 17058976 | ID=Msa0153600-mRNA-1:exon:6528;Parent=Msa0153600-mRNA-1 |
| chr1_4 | exon | 17058653 | 17058892 | 17058653 | ID=Msa0153600-mRNA-1:exon:6527;Parent=Msa0153600-mRNA-1 |
| chr1_4 | five_prime_UTR | 17063860 | 17063876 | 17063860 | ID=Msa0153600-mRNA-1:five_prime_utr;Parent=Msa0153600-mRNA-1 |
| chr1_4 | CDS | 17063743 | 17063859 | 17063743 | ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1 |
| chr1_4 | CDS | 17062046 | 17062268 | 17062046 | ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1 |
| chr1_4 | CDS | 17061788 | 17062036 | 17061788 | ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1 |
| chr1_4 | CDS | 17061381 | 17061508 | 17061381 | ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1 |
| chr1_4 | CDS | 17060695 | 17060923 | 17060695 | ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1 |
| chr1_4 | CDS | 17059126 | 17059239 | 17059126 | ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1 |
| chr1_4 | CDS | 17058976 | 17059034 | 17058976 | ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1 |
| chr1_4 | CDS | 17058653 | 17058892 | 17058653 | ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
