AlfalfaGEDB | Msa0153600

M. sativa cultivar zhongmu-4 / Msa0153600

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153600	A0A072U9K2	67.227	476	112	7	12	453	5	470	0.0	617

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0153600	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0106920	Msa0153600	0.825694	4.077206e-54	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153600	MtrunA17_Chr6g0476171	55.986	284	58	5	197	453	2	245	2.68e-94	285
Msa0153600	MtrunA17_Chr1g0163141	85.890	163	19	2	37	196	7	168	3.58e-89	269
Msa0153600	MtrunA17_Chr6g0476181	73.750	160	31	2	40	196	1	152	1.84e-74	230
Msa0153600	MtrunA17_Chr1g0163131	41.543	337	134	9	1	304	1	307	2.09e-73	233
Msa0153600	MtrunA17_Chr1g0163131	44.318	88	47	1	366	453	221	306	1.11e-15	77.8
Msa0153600	MtrunA17_Chr1g0163101	60.106	188	50	3	12	196	4	169	7.58e-72	224
Msa0153600	MtrunA17_Chr1g0163181	33.261	460	223	19	34	453	14	429	1.71e-58	198
Msa0153600	MtrunA17_Chr1g0162161	60.625	160	40	3	40	196	3	142	7.66e-58	187
Msa0153600	MtrunA17_Chr1g0163201	31.651	436	213	14	41	453	19	392	2.40e-51	178
Msa0153600	MtrunA17_Chr1g0163081	56.329	158	41	4	40	194	5	137	7.24e-47	158

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153600	AT4G33280.1	25.163	306	170	11	36	303	34	318	1.23e-13	72.4

Showing 1 to 1 of 1 entries

Previous1Next

Find 81 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGAAGAGGTTTGCA+TGG	0.571811	1_4:-17062122	Msa0153600:CDS
AAACTAAAAGATCTCCACAT+CGG	0.700040	1_4:+17062094	None:intergenic
AACAATTAGAAGTGTTGGTG+AGG	0.594775	1_4:-17060899	Msa0153600:CDS
AACCACAAAGGAACCGGGCC+CGG	0.463990	1_4:-17060707	Msa0153600:CDS
AAGAAGCATGGTATATTTAG+TGG	0.374789	1_4:-17058843	Msa0153600:CDS
AAGGCAACAATTAGAAGTGT+TGG	0.542696	1_4:-17060904	Msa0153600:CDS
AATAATATGAGAGTGAAGCT+AGG	0.520491	1_4:+17061391	None:intergenic
AATCTGACCCTCCTTTGTAT+TGG	0.356917	1_4:+17062070	None:intergenic
AATGGAAACACAGGAGGCAT+GGG	0.543418	1_4:-17061481	Msa0153600:CDS
AATTAGAAGTGTTGGTGAGG+AGG	0.570785	1_4:-17060896	Msa0153600:CDS

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTCGATTACTTTGTATGATA+GGG	-	chr1_4:17059039-17059058	Msa0153600:intron	30.0%
TCGATTACTTTGTATGATAG+GGG	-	chr1_4:17059040-17059059	Msa0153600:intron	30.0%
TCTTATCTGTTGAAAGTTGA+AGG	-	chr1_4:17059103-17059122	Msa0153600:intron	30.0%
ACCTCAACATAAGATAATGA+GGG	-	chr1_4:17059141-17059160	Msa0153600:CDS	30.0%
CAAAAAAGATTGTTCAAGCA+CGG	-	chr1_4:17059767-17059786	Msa0153600:intron	30.0%
TACTGGTACACTTAAAAATG+TGG	-	chr1_4:17060078-17060097	Msa0153600:intron	30.0%
GTACACTTAAAAATGTGGAT+AGG	-	chr1_4:17060083-17060102	Msa0153600:intron	30.0%
TACCTCTCTACAAAATTTCT+CGG	+	chr1_4:17060270-17060289	None:intergenic	30.0%
AGTTTAAGGGATATTGGATT+TGG	+	chr1_4:17060306-17060325	None:intergenic	30.0%
TTTGGAAGTTTAAGGGATAT+TGG	+	chr1_4:17060312-17060331	None:intergenic	30.0%

Showing 1 to 10 of 341 entries

Previous1 2 3 4 5…35Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	17058653	17063876	17058653	ID=Msa0153600;Name=Msa0153600
chr1_4	mRNA	17058653	17063876	17058653	ID=Msa0153600-mRNA-1;Parent=Msa0153600;Name=Msa0153600-mRNA-1;_AED=0.13;_eAED=0.14;_QI=17\|0\|0\|1\|0.71\|0.75\|8\|0\|453
chr1_4	exon	17063743	17063876	17063743	ID=Msa0153600-mRNA-1:exon:6534;Parent=Msa0153600-mRNA-1
chr1_4	exon	17062046	17062268	17062046	ID=Msa0153600-mRNA-1:exon:6533;Parent=Msa0153600-mRNA-1
chr1_4	exon	17061788	17062036	17061788	ID=Msa0153600-mRNA-1:exon:6532;Parent=Msa0153600-mRNA-1
chr1_4	exon	17061381	17061508	17061381	ID=Msa0153600-mRNA-1:exon:6531;Parent=Msa0153600-mRNA-1
chr1_4	exon	17060695	17060923	17060695	ID=Msa0153600-mRNA-1:exon:6530;Parent=Msa0153600-mRNA-1
chr1_4	exon	17059126	17059239	17059126	ID=Msa0153600-mRNA-1:exon:6529;Parent=Msa0153600-mRNA-1
chr1_4	exon	17058976	17059034	17058976	ID=Msa0153600-mRNA-1:exon:6528;Parent=Msa0153600-mRNA-1
chr1_4	exon	17058653	17058892	17058653	ID=Msa0153600-mRNA-1:exon:6527;Parent=Msa0153600-mRNA-1
chr1_4	five_prime_UTR	17063860	17063876	17063860	ID=Msa0153600-mRNA-1:five_prime_utr;Parent=Msa0153600-mRNA-1
chr1_4	CDS	17063743	17063859	17063743	ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1
chr1_4	CDS	17062046	17062268	17062046	ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1
chr1_4	CDS	17061788	17062036	17061788	ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1
chr1_4	CDS	17061381	17061508	17061381	ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1
chr1_4	CDS	17060695	17060923	17060695	ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1
chr1_4	CDS	17059126	17059239	17059126	ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1
chr1_4	CDS	17058976	17059034	17058976	ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1
chr1_4	CDS	17058653	17058892	17058653	ID=Msa0153600-mRNA-1:cds;Parent=Msa0153600-mRNA-1

Gene Sequence

>Msa0153600

ATGTCGTTTCAACAACAACACGGCAACGGCGGCATTTACAATGGGCGTGGTAGTGAAGCTCAAGGAATGCATTTCTATTTAACCGTTCAACAACGCGAGCTTCAACACAAACAACTCATGATTCCGAGAAATTTTGTAGAGAGGTATTGGAAAAATGTACCAAATCCAATATCCCTTAAACTTCCAAATGGGTCTGCGTGCAAAATGAATTGGGTGCAATGCAGTGATGGTATTTGGCTTCAAAATTGGAAGAGGTTTGCATGGTCGCTCCGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTAATGTCATTATATTAGATGATAAAATTGACTATTCAAGTATGAGATGCAACGGCGATCAAGAAAATACTAAAGAGAGTCATGATGATGCTGACGACGACGACAATGATTATGAGTGTGTTGAGATTCCTAGTGACACTGAAAATACTAAAATTCCCCTCAAGAAAAAGAGAATCAATTCAAATGGCATTGCTACTACTGCTGCTACACCTCAAGGGAGTAACATTCACAAGAGAAAAACTAATATCAATGCAACCCAACAAAAAGTTTCAGAGGCTAATGGAAACACAGGAGGCATGGGTAAGAAAGCTAAAAATGCACAAAAACTAAATGAGAGAAGTTACACAAATTCTCATCCCAATGAGAACCCTAGCTTCACTCTCATATTATTGCCATATCATGCAACAATTAGAAGTGTTGGTGAGGAGGATAGAACATGGCACGTGACGTTAAACTTTGATGAATCCAGAATAAGTTTTCGAATGGGAAGTGGTTGGAAGTCATTTTCACGGGAACATAACTTGCAAGTCGGTGACATGTGTACGTTTGAGATGACTCAACGCAAACCACTTTCATTCACGATTGCTATCATCTCAACCACAAAGGAACCGGGCCCGGAGAAGTTTCAAGAAAACCAAGGAGTCCAAGACAAATCAAAGACAACACCCGTAAAAGATATGGAATATGCGGGCAATTTTGGAGATGGAATTTCAAGGAGCTGCACAAAAACACATGGTTTTAGGGATTCTGTAAGTCTGGGTTTACATGAGATGTTCAAGGTTTTTATAACATCATCAGACAAGTTGGTTGTACTACCAAGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCAGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAATTATAATGAACATCTCGACTATGGGTGGTTCACTAAAGGCTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGACTGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTT

Protein sequence

>Msa0153600

MSFQQQHGNGGIYNGRGSEAQGMHFYLTVQQRELQHKQLMIPRNFVERYWKNVPNPISLKLPNGSACKMNWVQCSDGIWLQNWKRFAWSLRCGDLLVFQYKGGSDFNVIILDDKIDYSSMRCNGDQENTKESHDDADDDDNDYECVEIPSDTENTKIPLKKKRINSNGIATTAATPQGSNIHKRKTNINATQQKVSEANGNTGGMGKKAKNAQKLNERSYTNSHPNENPSFTLILLPYHATIRSVGEEDRTWHVTLNFDESRISFRMGSGWKSFSREHNLQVGDMCTFEMTQRKPLSFTIAIISTTKEPGPEKFQENQGVQDKSKTTPVKDMEYAGNFGDGISRSCTKTHGFRDSVSLGLHEMFKVFITSSDKLVVLPSELLKKHGIFSGNSVELRVGEGTWFVEVNYNEHLDYGWFTKGWQEFVRDCKVKTGDTCLFETIDVQNHVFKVSIV