Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107300 | XP_013466792.1 | 91.720 | 314 | 20 | 2 | 1 | 308 | 1 | 314 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107300 | sp|K7K424|DAT2D_SOYBN | 59.868 | 304 | 121 | 1 | 6 | 308 | 26 | 329 | 6.57e-135 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107300 | A0A072VHE2 | 91.720 | 314 | 20 | 2 | 1 | 308 | 1 | 314 | 0.0 | 583 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107300 | Msa0107440 | 0.962149 | 1.553590e-120 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107300 | MtrunA17_Chr8g0369951 | 62.046 | 303 | 114 | 1 | 7 | 308 | 16 | 318 | 5.39e-141 | 400 |
| Msa0107300 | MtrunA17_Chr5g0407691 | 60.066 | 303 | 120 | 1 | 7 | 308 | 19 | 321 | 8.30e-139 | 395 |
| Msa0107300 | MtrunA17_Chr1g0163481 | 89.474 | 190 | 14 | 2 | 1 | 184 | 1 | 190 | 3.36e-117 | 337 |
| Msa0107300 | MtrunA17_Chr8g0369941 | 67.431 | 218 | 41 | 1 | 121 | 308 | 2 | 219 | 3.68e-105 | 306 |
| Msa0107300 | MtrunA17_Chr8g0369931 | 65.714 | 105 | 28 | 1 | 1 | 97 | 1 | 105 | 6.76e-36 | 125 |
| Msa0107300 | MtrunA17_Chr1g0163471 | 96.970 | 33 | 1 | 0 | 214 | 246 | 3 | 35 | 7.15e-16 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107300 | AT3G51520.1 | 54.125 | 303 | 137 | 2 | 7 | 308 | 13 | 314 | 2.43e-124 | 358 |
Find 58 sgRNAs with CRISPR-Local
Find 549 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTGCTCATAGTGTTTA+TGG | 0.105062 | 1_3:-17425394 | Msa0107300:CDS |
| AGACGATTCAACTGATATTT+TGG | 0.129345 | 1_3:-17419587 | Msa0107300:CDS |
| CTAACAAGAAATCTTATATT+TGG | 0.153683 | 1_3:+17424211 | None:intergenic |
| TGCGGATAAGAACAGTTATT+TGG | 0.169374 | 1_3:-17425364 | Msa0107300:CDS |
| TTCCATGTTAACCGATCTTA+TGG | 0.263645 | 1_3:-17425144 | Msa0107300:intron |
| AGAAATCTTATATTTGGAAT+AGG | 0.293241 | 1_3:+17424217 | None:intergenic |
| GTAGCATTGGCTCTGTGTTT+TGG | 0.298676 | 1_3:-17425602 | Msa0107300:CDS |
| TCTCTATATTTCAGATTCAT+AGG | 0.304908 | 1_3:-17425222 | Msa0107300:intron |
| AATTCAGGTTGACAAAATTT+CGG | 0.317963 | 1_3:-17418210 | Msa0107300:CDS |
| GAAGAATTTAATTTCTTTGT+TGG | 0.319357 | 1_3:-17424044 | Msa0107300:CDS |
| GAAATCTTATATTTGGAATA+GGG | 0.329986 | 1_3:+17424218 | None:intergenic |
| TTCAAACAAATTTCAACTTA+AGG | 0.342964 | 1_3:+17417494 | None:intergenic |
| CACAGACAGAAACTTATAAA+TGG | 0.352297 | 1_3:-17419656 | Msa0107300:intron |
| TCGTCTAAGTGAAGCGTGAT+AGG | 0.357051 | 1_3:+17425177 | None:intergenic |
| CGTGGTGGGTAGACCAATTC+AGG | 0.358348 | 1_3:-17418225 | Msa0107300:CDS |
| ACCTGACCAAAGCAGAAAAC+TGG | 0.386400 | 1_3:+17422504 | None:intergenic |
| TATAAATGGTGGAAAGTTCC+TGG | 0.404021 | 1_3:-17419642 | Msa0107300:CDS |
| ATATATACCTGCTCTCTTGT+TGG | 0.411840 | 1_3:+17418185 | None:intergenic |
| GCGGATAAGAACAGTTATTT+GGG | 0.435225 | 1_3:-17425363 | Msa0107300:CDS |
| AATGGATTCTTGAATGGTAT+AGG | 0.447414 | 1_3:+17418254 | None:intergenic |
| TTAATTTCTTTGTTGGAGGC+TGG | 0.448600 | 1_3:-17424037 | Msa0107300:CDS |
| AGACAAGTATGGATATGGTT+GGG | 0.466952 | 1_3:-17424085 | Msa0107300:CDS |
| ACATACAATGGATTCTTGAA+TGG | 0.469129 | 1_3:+17418248 | None:intergenic |
| GAATTTAATTTCTTTGTTGG+AGG | 0.477891 | 1_3:-17424041 | Msa0107300:CDS |
| CTTCAAATCTGTTGTAGCAT+TGG | 0.485848 | 1_3:-17425615 | Msa0107300:CDS |
| GAGACAAGTATGGATATGGT+TGG | 0.504402 | 1_3:-17424086 | Msa0107300:CDS |
| AAAGCAGAAAACTGGAACAA+GGG | 0.523379 | 1_3:+17422512 | None:intergenic |
| TGTTCAAATAGCAATGGAGA+TGG | 0.535110 | 1_3:-17422541 | Msa0107300:CDS |
| GCTGCATATAAAGTGTTTCG+CGG | 0.541133 | 1_3:+17423984 | None:intergenic |
| AGGATTTGTTCAAATAGCAA+TGG | 0.541302 | 1_3:-17422547 | Msa0107300:CDS |
| ATATTCTCAATTAACTTACC+AGG | 0.541488 | 1_3:+17419624 | None:intergenic |
| GAACGACACAAGACTCAAGC+TGG | 0.542007 | 1_3:-17417526 | Msa0107300:CDS |
| AAGAAACTCACTGTGTACTC+TGG | 0.548735 | 1_3:+17417570 | None:intergenic |
| AGTGTTTCGCGGTTTCCACC+AGG | 0.554076 | 1_3:+17423995 | None:intergenic |
| AAATAACTGTTCTTATCCGC+AGG | 0.554982 | 1_3:+17425366 | None:intergenic |
| TTCGGAACCAACAAGAGAGC+AGG | 0.555635 | 1_3:-17418192 | Msa0107300:intron |
| GTTCAAATAGCAATGGAGAT+GGG | 0.559401 | 1_3:-17422540 | Msa0107300:CDS |
| AACCATAAGATCGGTTAACA+TGG | 0.559670 | 1_3:+17425142 | None:intergenic |
| CTACCCACCACGACATACAA+TGG | 0.566505 | 1_3:+17418236 | None:intergenic |
| GTTAATACAAACCATAAGAT+CGG | 0.573060 | 1_3:+17425133 | None:intergenic |
| CAAAGCAGAAAACTGGAACA+AGG | 0.575333 | 1_3:+17422511 | None:intergenic |
| GTATTTCTTAAAGAAAGAAG+AGG | 0.577291 | 1_3:-17422567 | Msa0107300:CDS |
| CGTCTAAGTGAAGCGTGATA+GGG | 0.579159 | 1_3:+17425178 | None:intergenic |
| GAATCCATTGTATGTCGTGG+TGG | 0.579408 | 1_3:-17418240 | Msa0107300:CDS |
| AGACAGAAACTTATAAATGG+TGG | 0.587840 | 1_3:-17419653 | Msa0107300:CDS |
| AAACACTTTATATGCAGCAT+GGG | 0.589263 | 1_3:-17423979 | Msa0107300:CDS |
| GAAACACTTTATATGCAGCA+TGG | 0.590323 | 1_3:-17423980 | Msa0107300:CDS |
| AGTGTTTATGGTGCTTCCTG+CGG | 0.592032 | 1_3:-17425382 | Msa0107300:CDS |
| AAGCAGAAAACTGGAACAAG+GGG | 0.599758 | 1_3:+17422513 | None:intergenic |
| ATGCTACAACAGATTTGAAG+CGG | 0.608325 | 1_3:+17425618 | None:intergenic |
| CAAGAATCCATTGTATGTCG+TGG | 0.609440 | 1_3:-17418243 | Msa0107300:CDS |
| AGAAGTGCAAATATGCCGAA+TGG | 0.610714 | 1_3:+17424256 | None:intergenic |
| AATCCATTGTATGTCGTGGT+GGG | 0.635307 | 1_3:-17418239 | Msa0107300:CDS |
| TTATATGCAGCATGGGTGCG+AGG | 0.657423 | 1_3:-17423972 | Msa0107300:intron |
| AGTTGCATGTTAGTACCTGG+TGG | 0.667923 | 1_3:-17424010 | Msa0107300:CDS |
| AATAGTTGCATGTTAGTACC+TGG | 0.672196 | 1_3:-17424013 | Msa0107300:CDS |
| AGTTAATTGAGAATATTGCG+AGG | 0.730608 | 1_3:-17419617 | Msa0107300:CDS |
| AGCAGAAAACTGGAACAAGG+GGG | 0.745483 | 1_3:+17422514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | + | chr1_3:17425388-17425407 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr1_3:17425389-17425408 | None:intergenic | 0.0% |
| !! | ATTTATATTTAACATATTTG+GGG | - | chr1_3:17418217-17418236 | Msa0107300:CDS | 10.0% |
| !! | GTCAAAAAAATAAATAAATA+TGG | + | chr1_3:17418262-17418281 | None:intergenic | 10.0% |
| !! | TTAATATCTAAATACTATAT+AGG | - | chr1_3:17418311-17418330 | Msa0107300:intron | 10.0% |
| !!! | ACAATTAAATTTGAAATAAA+AGG | + | chr1_3:17418952-17418971 | None:intergenic | 10.0% |
| !! | TAAGATATTAACATTAAAAA+AGG | - | chr1_3:17421046-17421065 | Msa0107300:intron | 10.0% |
| !! | AAGATATTAACATTAAAAAA+GGG | - | chr1_3:17421047-17421066 | Msa0107300:intron | 10.0% |
| !! | TCATAAAATAAATAAATAGA+GGG | + | chr1_3:17424151-17424170 | None:intergenic | 10.0% |
| !! | TTCATAAAATAAATAAATAG+AGG | + | chr1_3:17424152-17424171 | None:intergenic | 10.0% |
| !!! | TACATTAAATAAATTTTTAG+TGG | - | chr1_3:17424504-17424523 | Msa0107300:intron | 10.0% |
| !!! | ACATTAAATAAATTTTTAGT+GGG | - | chr1_3:17424505-17424524 | Msa0107300:intron | 10.0% |
| !! | AAATAAATGTAAAAAAGGAA+AGG | + | chr1_3:17417624-17417643 | None:intergenic | 15.0% |
| !! | AAGGAAAATAAATGTAAAAA+AGG | + | chr1_3:17417629-17417648 | None:intergenic | 15.0% |
| !!! | GTTTTATTATCCAAATTAAT+TGG | + | chr1_3:17418041-17418060 | None:intergenic | 15.0% |
| !!! | GATTTTGAAAAGAAAAATAT+TGG | + | chr1_3:17418063-17418082 | None:intergenic | 15.0% |
| !! | ATATTAATGCATAAGAAATA+TGG | + | chr1_3:17418298-17418317 | None:intergenic | 15.0% |
| !! | AATAACTTAAAAAACTTAAG+TGG | - | chr1_3:17418560-17418579 | Msa0107300:intron | 15.0% |
| !!! | TGAGGTAATTTTTTTTTAAA+AGG | - | chr1_3:17418640-17418659 | Msa0107300:intron | 15.0% |
| !! | ACACTTTAATTATAATAAGT+TGG | + | chr1_3:17418667-17418686 | None:intergenic | 15.0% |
| !!! | AAGAGTATTTATATTTTTTG+TGG | + | chr1_3:17419219-17419238 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTTACAAATTC+CGG | - | chr1_3:17419597-17419616 | Msa0107300:CDS | 15.0% |
| !!! | TTTTTTTTTTTACAAATTCC+GGG | - | chr1_3:17419598-17419617 | Msa0107300:CDS | 15.0% |
| !! | ATAATAATAGTATCAATACA+AGG | + | chr1_3:17419716-17419735 | None:intergenic | 15.0% |
| !! | TATTAATTAAGTGTATGTTT+AGG | - | chr1_3:17419806-17419825 | Msa0107300:intron | 15.0% |
| !! | TAAAAAAGGATAATTAGAAT+AGG | + | chr1_3:17419956-17419975 | None:intergenic | 15.0% |
| !!! | ATTCTAATTATCCTTTTTTA+AGG | - | chr1_3:17419956-17419975 | Msa0107300:intron | 15.0% |
| !! | ATTGTACCAAAAAAAAAAAA+AGG | + | chr1_3:17420435-17420454 | None:intergenic | 15.0% |
| !! | AAAAATAAAGAGATTAGTAT+GGG | + | chr1_3:17420639-17420658 | None:intergenic | 15.0% |
| !! | TAATGTTAATATCTTATGTT+GGG | + | chr1_3:17421042-17421061 | None:intergenic | 15.0% |
| !! | TTAATGTTAATATCTTATGT+TGG | + | chr1_3:17421043-17421062 | None:intergenic | 15.0% |
| !! | ATGCAATAAAATAAGATAAA+GGG | - | chr1_3:17421587-17421606 | Msa0107300:intron | 15.0% |
| !! | AATAAATAAACTAAAGATTG+AGG | + | chr1_3:17421862-17421881 | None:intergenic | 15.0% |
| !! | TAGTTTATTTATTCCTTAAA+AGG | - | chr1_3:17421869-17421888 | Msa0107300:intron | 15.0% |
| !!! | ACTTTTTGTACTATATATAT+AGG | + | chr1_3:17423301-17423320 | None:intergenic | 15.0% |
| !! | ATATATATAGTACAAAAAGT+TGG | - | chr1_3:17423301-17423320 | Msa0107300:intron | 15.0% |
| !! | TATCAAGAGATAAAATAAAT+AGG | - | chr1_3:17423715-17423734 | Msa0107300:intron | 15.0% |
| !!! | CATTAAATAAATTTTTAGTG+GGG | - | chr1_3:17424506-17424525 | Msa0107300:intron | 15.0% |
| !!! | ACCATATGTATTTTTTTTAA+TGG | - | chr1_3:17424776-17424795 | Msa0107300:intron | 15.0% |
| !! | ACCATTAAAAAAAATACATA+TGG | + | chr1_3:17424780-17424799 | None:intergenic | 15.0% |
| !!! | CTTTTTTGTTTCTTTATTTA+AGG | - | chr1_3:17425220-17425239 | Msa0107300:intron | 15.0% |
| !!! | TGTTTTAGTAAATTATAAGA+GGG | - | chr1_3:17425309-17425328 | Msa0107300:intron | 15.0% |
| !!! | AAAAAACCATGATTTTTTTT+TGG | - | chr1_3:17425631-17425650 | Msa0107300:CDS | 15.0% |
| !! | TAGTGAAATAATAAAGCTAA+GGG | + | chr1_3:17417808-17417827 | None:intergenic | 20.0% |
| !! | ATAGTGAAATAATAAAGCTA+AGG | + | chr1_3:17417809-17417828 | None:intergenic | 20.0% |
| !! | TGTATTAACATAGAAAATAG+TGG | - | chr1_3:17417985-17418004 | Msa0107300:intron | 20.0% |
| !! | TTCAAAATCAAATAATGTAG+TGG | - | chr1_3:17418074-17418093 | Msa0107300:intron | 20.0% |
| !! | TAAGGGATCAAATATTATTT+GGG | - | chr1_3:17418184-17418203 | Msa0107300:intron | 20.0% |
| !!! | TTTTTTTTTTCGTATTACGT+AGG | - | chr1_3:17418448-17418467 | Msa0107300:intron | 20.0% |
| !! | TCATTTAAATGACATAAATG+AGG | - | chr1_3:17418622-17418641 | Msa0107300:intron | 20.0% |
| !!! | GAAATCTTATATTTGGAATA+GGG | + | chr1_3:17418889-17418908 | None:intergenic | 20.0% |
| !!! | AGAAATCTTATATTTGGAAT+AGG | + | chr1_3:17418890-17418909 | None:intergenic | 20.0% |
| !! | CTAACAAGAAATCTTATATT+TGG | + | chr1_3:17418896-17418915 | None:intergenic | 20.0% |
| !!! | GAAGAATTTAATTTCTTTGT+TGG | - | chr1_3:17419060-17419079 | Msa0107300:intron | 20.0% |
| !! | GTAATATTAACACACAAAAT+AGG | + | chr1_3:17419429-17419448 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTACAAATTCCG+GGG | - | chr1_3:17419599-17419618 | Msa0107300:CDS | 20.0% |
| !!! | CGTAAACCTTTTTTTTTTTT+TGG | - | chr1_3:17420426-17420445 | Msa0107300:intron | 20.0% |
| !! | TCTTATTAGTAGAAAAACAA+TGG | + | chr1_3:17420494-17420513 | None:intergenic | 20.0% |
| !! | CAAAAATAAAGAGATTAGTA+TGG | + | chr1_3:17420640-17420659 | None:intergenic | 20.0% |
| !! | ATCTTATATATAACAGATGT+TGG | + | chr1_3:17420818-17420837 | None:intergenic | 20.0% |
| !! | GAAATATATGTGTTAGTTAA+CGG | - | chr1_3:17421013-17421032 | Msa0107300:intron | 20.0% |
| !!! | AATTTTTTCCTTTAGGTTTA+AGG | - | chr1_3:17421152-17421171 | Msa0107300:intron | 20.0% |
| !! | CATGCAATAAAATAAGATAA+AGG | - | chr1_3:17421586-17421605 | Msa0107300:intron | 20.0% |
| !!! | AGCTAATTTGTTATAAACTT+TGG | + | chr1_3:17421716-17421735 | None:intergenic | 20.0% |
| !!! | TTAAATGATTTTACAACCAA+TGG | - | chr1_3:17421794-17421813 | Msa0107300:intron | 20.0% |
| !! | ATATACACATTTAAAAGGTA+AGG | + | chr1_3:17422598-17422617 | None:intergenic | 20.0% |
| !! | TTTCAAAGATTGATATTAGT+TGG | - | chr1_3:17423342-17423361 | Msa0107300:intron | 20.0% |
| !!! | TGCATTTATTTTCCTTTTTT+TGG | - | chr1_3:17423424-17423443 | Msa0107300:intron | 20.0% |
| !! | AATTCCAATTGTGAAAATTA+AGG | + | chr1_3:17424014-17424033 | None:intergenic | 20.0% |
| !! | AAAATTGTTGAGATAGTTAA+TGG | - | chr1_3:17424040-17424059 | Msa0107300:CDS | 20.0% |
| !! | CAAATTTAGTACTATATAGT+GGG | + | chr1_3:17424120-17424139 | None:intergenic | 20.0% |
| !!! | TCAAACTTCATTTTTGTATA+TGG | + | chr1_3:17424663-17424682 | None:intergenic | 20.0% |
| !! | TATACAAAAATGAAGTTTGA+TGG | - | chr1_3:17424663-17424682 | Msa0107300:intron | 20.0% |
| !! | TATGTCAAATAAAAAATGAC+AGG | + | chr1_3:17424727-17424746 | None:intergenic | 20.0% |
| !!! | CATTTTTTATTTGACATATC+AGG | - | chr1_3:17424729-17424748 | Msa0107300:intron | 20.0% |
| !! | GGTACAAAAAAAAATTTAAG+AGG | + | chr1_3:17424759-17424778 | None:intergenic | 20.0% |
| !!! | ACTTTTAAGGAAACAATATT+TGG | + | chr1_3:17425159-17425178 | None:intergenic | 20.0% |
| !!! | GTAATAAAGACAAACTTTTA+AGG | + | chr1_3:17425172-17425191 | None:intergenic | 20.0% |
| !!! | GTGTTTTAGTAAATTATAAG+AGG | - | chr1_3:17425308-17425327 | Msa0107300:intron | 20.0% |
| !! | GAAGAAAATACAAGTTAATA+TGG | + | chr1_3:17425499-17425518 | None:intergenic | 20.0% |
| !!! | GTATTTTCTTCTTTACATTT+AGG | - | chr1_3:17425508-17425527 | Msa0107300:intron | 20.0% |
| !! | TTCAAACAAATTTCAACTTA+AGG | + | chr1_3:17425613-17425632 | None:intergenic | 20.0% |
| !! | TTTAGACCAAAAAAAAATCA+TGG | + | chr1_3:17425640-17425659 | None:intergenic | 20.0% |
| ! | TGTAAAAAAGGAAAGGAAAA+AGG | + | chr1_3:17417617-17417636 | None:intergenic | 25.0% |
| !! | AAAATATTTGAGACATGAGA+AGG | + | chr1_3:17417648-17417667 | None:intergenic | 25.0% |
| ! | ATCCAGGTAATTGATTAATT+TGG | - | chr1_3:17417773-17417792 | Msa0107300:intron | 25.0% |
| ! | TCCAGGTAATTGATTAATTT+GGG | - | chr1_3:17417774-17417793 | Msa0107300:intron | 25.0% |
| !! | GAATCTGAAATATAGAGAAA+AGG | + | chr1_3:17417880-17417899 | None:intergenic | 25.0% |
| ! | TCTCTATATTTCAGATTCAT+AGG | - | chr1_3:17417882-17417901 | Msa0107300:intron | 25.0% |
| ! | GTTAATACAAACCATAAGAT+CGG | + | chr1_3:17417974-17417993 | None:intergenic | 25.0% |
| !!! | ATAGAAAATAGTGGATACAA+TGG | - | chr1_3:17417994-17418013 | Msa0107300:intron | 25.0% |
| ! | GTAAGGGATCAAATATTATT+TGG | - | chr1_3:17418183-17418202 | Msa0107300:intron | 25.0% |
| ! | AAGGGATCAAATATTATTTG+GGG | - | chr1_3:17418185-17418204 | Msa0107300:intron | 25.0% |
| ! | TATAGGTTAAATTACACAAG+AGG | - | chr1_3:17418328-17418347 | Msa0107300:intron | 25.0% |
| ! | GATTTAACTATTGCAATTTG+AGG | - | chr1_3:17418483-17418502 | Msa0107300:intron | 25.0% |
| ! | TAAAACGAAGTCTTAACAAA+TGG | + | chr1_3:17418728-17418747 | None:intergenic | 25.0% |
| !!! | TGCTGTTATTTTTATATCAC+AGG | + | chr1_3:17418785-17418804 | None:intergenic | 25.0% |
| ! | ATAAAAGGAAAAGAGTTACA+AGG | + | chr1_3:17418937-17418956 | None:intergenic | 25.0% |
| !! | TTCTCATCTCATTTTATGAA+TGG | - | chr1_3:17418971-17418990 | Msa0107300:intron | 25.0% |
| !! | ATCTCATTTTATGAATGGAT+AGG | - | chr1_3:17418976-17418995 | Msa0107300:intron | 25.0% |
| !! | GAATTTAATTTCTTTGTTGG+AGG | - | chr1_3:17419063-17419082 | Msa0107300:intron | 25.0% |
| !! | ACATGTCAATTTTCTTCATT+TGG | + | chr1_3:17419313-17419332 | None:intergenic | 25.0% |
| !! | TTTTGACAAAATCATCTTGA+CGG | + | chr1_3:17419505-17419524 | None:intergenic | 25.0% |
| ! | ATAATAGTATCAATACAAGG+TGG | + | chr1_3:17419713-17419732 | None:intergenic | 25.0% |
| ! | GCATAAATAAATTACTTCCT+CGG | + | chr1_3:17419921-17419940 | None:intergenic | 25.0% |
| ! | GATAGCAATAACCTTAAAAA+AGG | + | chr1_3:17419970-17419989 | None:intergenic | 25.0% |
| ! | AATTGTAAGACCATATTCAA+TGG | + | chr1_3:17420337-17420356 | None:intergenic | 25.0% |
| ! | GTATTTCTTAAAGAAAGAAG+AGG | - | chr1_3:17420537-17420556 | Msa0107300:intron | 25.0% |
| !! | AAGATGAACCTTACTATTTT+TGG | - | chr1_3:17420715-17420734 | Msa0107300:intron | 25.0% |
| ! | ATAAATATATGCAAGGTTCA+GGG | + | chr1_3:17420759-17420778 | None:intergenic | 25.0% |
| ! | ACAATGCATAAATATATGCA+AGG | + | chr1_3:17420766-17420785 | None:intergenic | 25.0% |
| ! | ATCCTATATTCCCTTAAAAA+AGG | + | chr1_3:17420861-17420880 | None:intergenic | 25.0% |
| !! | TATATTTCTAAACAAGAGAC+AGG | + | chr1_3:17421001-17421020 | None:intergenic | 25.0% |
| !!! | TGAGCATAATTTTTTCCTTT+AGG | - | chr1_3:17421145-17421164 | Msa0107300:intron | 25.0% |
| !!! | ACCAACCCTTTTATTTAATT+CGG | - | chr1_3:17421352-17421371 | Msa0107300:intron | 25.0% |
| ! | GCAAACCGAATTAAATAAAA+GGG | + | chr1_3:17421360-17421379 | None:intergenic | 25.0% |
| ! | TCATTTATAGTATCAGTACT+TGG | - | chr1_3:17421431-17421450 | Msa0107300:intron | 25.0% |
| !!! | AGTAATAGGTTTTTTTGTCA+CGG | - | chr1_3:17421454-17421473 | Msa0107300:intron | 25.0% |
| ! | ACTCATAATAATTTGATGTG+TGG | - | chr1_3:17421554-17421573 | Msa0107300:intron | 25.0% |
| ! | CTCATAATAATTTGATGTGT+GGG | - | chr1_3:17421555-17421574 | Msa0107300:intron | 25.0% |
| ! | TCATAATAATTTGATGTGTG+GGG | - | chr1_3:17421556-17421575 | Msa0107300:intron | 25.0% |
| ! | AGGATAAAAGTTAGGAATTA+TGG | + | chr1_3:17421744-17421763 | None:intergenic | 25.0% |
| ! | AAACACTATTCAAATACCAT+TGG | + | chr1_3:17421813-17421832 | None:intergenic | 25.0% |
| !! | AACTAAAGATTGAGGATTTT+GGG | + | chr1_3:17421854-17421873 | None:intergenic | 25.0% |
| !! | AAACTAAAGATTGAGGATTT+TGG | + | chr1_3:17421855-17421874 | None:intergenic | 25.0% |
| ! | TTCAGTTTATGAGACAAAAA+AGG | + | chr1_3:17421922-17421941 | None:intergenic | 25.0% |
| ! | TATTCCTATCTGATGTTTAA+GGG | + | chr1_3:17421984-17422003 | None:intergenic | 25.0% |
| ! | TTATTCCTATCTGATGTTTA+AGG | + | chr1_3:17421985-17422004 | None:intergenic | 25.0% |
| ! | AGTAAACAAAAGACAACATA+TGG | - | chr1_3:17422107-17422126 | Msa0107300:intron | 25.0% |
| ! | GTAAACAAAAGACAACATAT+GGG | - | chr1_3:17422108-17422127 | Msa0107300:intron | 25.0% |
| ! | TAAACAAAAGACAACATATG+GGG | - | chr1_3:17422109-17422128 | Msa0107300:intron | 25.0% |
| !! | AGTTTTACCTTAAAGAACAA+GGG | + | chr1_3:17422393-17422412 | None:intergenic | 25.0% |
| !!! | TAGTTTTACCTTAAAGAACA+AGG | + | chr1_3:17422394-17422413 | None:intergenic | 25.0% |
| ! | AGTGGATATACACATTTAAA+AGG | + | chr1_3:17422603-17422622 | None:intergenic | 25.0% |
| ! | ATTGTTTATGAATGACATAG+TGG | + | chr1_3:17422621-17422640 | None:intergenic | 25.0% |
| ! | ATATTATACCATATGCAAGA+AGG | + | chr1_3:17422731-17422750 | None:intergenic | 25.0% |
| ! | ATAGAAGATTGTATTATTGC+GGG | + | chr1_3:17422897-17422916 | None:intergenic | 25.0% |
| ! | CATAGAAGATTGTATTATTG+CGG | + | chr1_3:17422898-17422917 | None:intergenic | 25.0% |
| ! | ATAATACAATCTTCTATGGA+AGG | - | chr1_3:17422900-17422919 | Msa0107300:intron | 25.0% |
| ! | TTTAAAGAGGACAATTGATA+GGG | + | chr1_3:17423389-17423408 | None:intergenic | 25.0% |
| ! | ATTTAAAGAGGACAATTGAT+AGG | + | chr1_3:17423390-17423409 | None:intergenic | 25.0% |
| ! | ATATTCTCAATTAACTTACC+AGG | + | chr1_3:17423483-17423502 | None:intergenic | 25.0% |
| !! | TGCTATCATTTTCTTTCAAA+AGG | + | chr1_3:17423656-17423675 | None:intergenic | 25.0% |
| ! | ATATATTTCCTTGTTCAGAT+TGG | + | chr1_3:17423698-17423717 | None:intergenic | 25.0% |
| !! | CAACAATTGTTACTCTATTT+TGG | + | chr1_3:17423848-17423867 | None:intergenic | 25.0% |
| ! | CAAAATAGAGTAACAATTGT+TGG | - | chr1_3:17423846-17423865 | Msa0107300:intron | 25.0% |
| ! | AATTTGAATCTAACATTGAC+CGG | + | chr1_3:17423909-17423928 | None:intergenic | 25.0% |
| ! | CCAAATTTAGTACTATATAG+TGG | + | chr1_3:17424121-17424140 | None:intergenic | 25.0% |
| ! | CCACTATATAGTACTAAATT+TGG | - | chr1_3:17424118-17424137 | Msa0107300:intron | 25.0% |
| ! | CTATATAGTACTAAATTTGG+AGG | - | chr1_3:17424121-17424140 | Msa0107300:intron | 25.0% |
| ! | TATGAATGTCAAATGTTAGT+AGG | - | chr1_3:17424166-17424185 | Msa0107300:intron | 25.0% |
| !!! | TAGTAGGTTACTTGTTATTA+AGG | - | chr1_3:17424182-17424201 | Msa0107300:intron | 25.0% |
| !!! | AGTAGGTTACTTGTTATTAA+GGG | - | chr1_3:17424183-17424202 | Msa0107300:intron | 25.0% |
| ! | TTTATTAGAGGACATATCTT+GGG | + | chr1_3:17424273-17424292 | None:intergenic | 25.0% |
| ! | AAGATACTACTCTTTATTAG+AGG | + | chr1_3:17424285-17424304 | None:intergenic | 25.0% |
| ! | TTATTTAGAGGACATACATT+GGG | + | chr1_3:17424352-17424371 | None:intergenic | 25.0% |
| ! | ATTATTTAGAGGACATACAT+TGG | + | chr1_3:17424353-17424372 | None:intergenic | 25.0% |
| !! | TTTTGTGCTCAATTATTTAG+AGG | + | chr1_3:17424364-17424383 | None:intergenic | 25.0% |
| !! | CTATATGTTTTCTATACCTT+AGG | - | chr1_3:17424575-17424594 | Msa0107300:intron | 25.0% |
| !! | TCAAGTGAAATTGTTCATTT+TGG | + | chr1_3:17424623-17424642 | None:intergenic | 25.0% |
| ! | CAAAAAAAAATTTAAGAGGC+TGG | + | chr1_3:17424755-17424774 | None:intergenic | 25.0% |
| ! | ATATCATGAGGATTGATATA+TGG | + | chr1_3:17424809-17424828 | None:intergenic | 25.0% |
| !!! | AATTCAGGTTGACAAAATTT+CGG | - | chr1_3:17424894-17424913 | Msa0107300:intron | 25.0% |
| ! | TAGACTCATATATACATAGA+GGG | - | chr1_3:17425015-17425034 | Msa0107300:intron | 25.0% |
| !! | ACACCCATCTAAAATTATTA+AGG | - | chr1_3:17425089-17425108 | Msa0107300:intron | 25.0% |
| !! | GCACCTTAATAATTTTAGAT+GGG | + | chr1_3:17425095-17425114 | None:intergenic | 25.0% |
| !! | TGCACCTTAATAATTTTAGA+TGG | + | chr1_3:17425096-17425115 | None:intergenic | 25.0% |
| !! | ATATTTGGAATGGTGAAAAT+GGG | + | chr1_3:17425144-17425163 | None:intergenic | 25.0% |
| !! | AATATTTGGAATGGTGAAAA+TGG | + | chr1_3:17425145-17425164 | None:intergenic | 25.0% |
| ! | TAAGGAAACAATATTTGGAA+TGG | + | chr1_3:17425154-17425173 | None:intergenic | 25.0% |
| ! | ATATATATAACTTATCACCC+AGG | - | chr1_3:17425462-17425481 | Msa0107300:intron | 25.0% |
| ! | GAAAATACAAGTTAATATGG+AGG | + | chr1_3:17425496-17425515 | None:intergenic | 25.0% |
| !! | AAATAATGTAGTGGATACAG+TGG | - | chr1_3:17418083-17418102 | Msa0107300:intron | 30.0% |
| AAAGGTCTAGAAGAAAAGTA+AGG | - | chr1_3:17418166-17418185 | Msa0107300:intron | 30.0% | |
| AAGGTCTAGAAGAAAAGTAA+GGG | - | chr1_3:17418167-17418186 | Msa0107300:intron | 30.0% | |
| !! | ATTACACAAGAGGTCATTTT+CGG | - | chr1_3:17418338-17418357 | Msa0107300:intron | 30.0% |
| AAGTCTTAACAAATGGATGA+AGG | + | chr1_3:17418721-17418740 | None:intergenic | 30.0% | |
| !!! | TACCATTTTTGAGACAAGTA+TGG | - | chr1_3:17419008-17419027 | Msa0107300:intron | 30.0% |
| ATCCATACTTGTCTCAAAAA+TGG | + | chr1_3:17419013-17419032 | None:intergenic | 30.0% | |
| !!! | TTTTGAGACAAGTATGGATA+TGG | - | chr1_3:17419014-17419033 | Msa0107300:intron | 30.0% |
| AAACACTTTATATGCAGCAT+GGG | - | chr1_3:17419125-17419144 | Msa0107300:intron | 30.0% | |
| !!! | TTATATTTTTTGTGGACCAC+AGG | + | chr1_3:17419211-17419230 | None:intergenic | 30.0% |
| AGAAATGTGACAAATGCAAA+TGG | + | chr1_3:17419377-17419396 | None:intergenic | 30.0% | |
| AAGATGATATTTCCGAGTTT+GGG | - | chr1_3:17419540-17419559 | Msa0107300:intron | 30.0% | |
| TATCAATACAAGGTGGAATA+CGG | + | chr1_3:17419706-17419725 | None:intergenic | 30.0% | |
| TTATTGCTATCGAATGTCTT+TGG | - | chr1_3:17419979-17419998 | Msa0107300:intron | 30.0% | |
| TATTGCTATCGAATGTCTTT+GGG | - | chr1_3:17419980-17419999 | Msa0107300:intron | 30.0% | |
| ! | TTTAAAGCGACCATTGAATA+TGG | - | chr1_3:17420324-17420343 | Msa0107300:intron | 30.0% |
| ! | AGGATTTGTTCAAATAGCAA+TGG | - | chr1_3:17420557-17420576 | Msa0107300:intron | 30.0% |
| !!! | ATGAACCTTACTATTTTTGG+TGG | - | chr1_3:17420718-17420737 | Msa0107300:intron | 30.0% |
| CATAAATATATGCAAGGTTC+AGG | + | chr1_3:17420760-17420779 | None:intergenic | 30.0% | |
| !!! | AATCAACCAGCCTTTTTTAA+GGG | - | chr1_3:17420848-17420867 | Msa0107300:intron | 30.0% |
| TATATTCCCTTAAAAAAGGC+TGG | + | chr1_3:17420857-17420876 | None:intergenic | 30.0% | |
| !!! | AGCCTTTTTTAAGGGAATAT+AGG | - | chr1_3:17420856-17420875 | Msa0107300:intron | 30.0% |
| GTTTCCTAGATTAAATGATG+TGG | - | chr1_3:17420937-17420956 | Msa0107300:intron | 30.0% | |
| ! | AAGCATTTGTTGAGAATCTA+TGG | - | chr1_3:17421238-17421257 | Msa0107300:intron | 30.0% |
| !! | ATGGTGTTTTAGACCTATTT+TGG | - | chr1_3:17421278-17421297 | Msa0107300:intron | 30.0% |
| !! | TGGTGTTTTAGACCTATTTT+GGG | - | chr1_3:17421279-17421298 | Msa0107300:intron | 30.0% |
| ACCGAATTAAATAAAAGGGT+TGG | + | chr1_3:17421356-17421375 | None:intergenic | 30.0% | |
| GGCAAACCGAATTAAATAAA+AGG | + | chr1_3:17421361-17421380 | None:intergenic | 30.0% | |
| CTATAAATGACGTGAATTAG+AGG | + | chr1_3:17421421-17421440 | None:intergenic | 30.0% | |
| !!! | TGTTGTTTTTTTGCCCAATT+TGG | - | chr1_3:17421628-17421647 | Msa0107300:intron | 30.0% |
| ! | CGTAAATCTTTTGCCAAATT+GGG | + | chr1_3:17421644-17421663 | None:intergenic | 30.0% |
| ! | ACGTAAATCTTTTGCCAAAT+TGG | + | chr1_3:17421645-17421664 | None:intergenic | 30.0% |
| AAAGATTTACGTACATGTGT+TGG | - | chr1_3:17421653-17421672 | Msa0107300:intron | 30.0% | |
| ! | TCTTTTTGTAAGCAGTGAAT+TGG | + | chr1_3:17421691-17421710 | None:intergenic | 30.0% |
| ! | TCCTAACTTTTATCCTTTGT+TGG | - | chr1_3:17421748-17421767 | Msa0107300:intron | 30.0% |
| ! | CCTAACTTTTATCCTTTGTT+GGG | - | chr1_3:17421749-17421768 | Msa0107300:intron | 30.0% |
| ! | TAAGTAGAAAGCACATGTTT+GGG | + | chr1_3:17421947-17421966 | None:intergenic | 30.0% |
| ! | ATAAGTAGAAAGCACATGTT+TGG | + | chr1_3:17421948-17421967 | None:intergenic | 30.0% |
| AACATGTGCTTTCTACTTAT+AGG | - | chr1_3:17421948-17421967 | Msa0107300:intron | 30.0% | |
| ACTTCATAGTTGTACCATTA+TGG | - | chr1_3:17422507-17422526 | Msa0107300:CDS | 30.0% | |
| GAATAAAACTCAGCTTAATG+AGG | + | chr1_3:17422574-17422593 | None:intergenic | 30.0% | |
| CAAGTAAAGAACAAATGAGA+AGG | + | chr1_3:17422699-17422718 | None:intergenic | 30.0% | |
| TCTCATTTGTTCTTTACTTG+TGG | - | chr1_3:17422699-17422718 | Msa0107300:intron | 30.0% | |
| CTCATTTGTTCTTTACTTGT+GGG | - | chr1_3:17422700-17422719 | Msa0107300:intron | 30.0% | |
| GCATATGGTATAATATTGTC+AGG | - | chr1_3:17422735-17422754 | Msa0107300:intron | 30.0% | |
| TATGGTATAATATTGTCAGG+TGG | - | chr1_3:17422738-17422757 | Msa0107300:intron | 30.0% | |
| TATAATATTGTCAGGTGGTT+AGG | - | chr1_3:17422743-17422762 | Msa0107300:intron | 30.0% | |
| ATAATATTGTCAGGTGGTTA+GGG | - | chr1_3:17422744-17422763 | Msa0107300:intron | 30.0% | |
| AATTTGACACGTTCTTATGT+GGG | - | chr1_3:17422858-17422877 | Msa0107300:intron | 30.0% | |
| TAGAAGATTGTATTATTGCG+GGG | + | chr1_3:17422896-17422915 | None:intergenic | 30.0% | |
| CGCAATAATACAATCTTCTA+TGG | - | chr1_3:17422896-17422915 | Msa0107300:intron | 30.0% | |
| CTAAATTCTCTACTTGAAAG+TGG | - | chr1_3:17422952-17422971 | Msa0107300:intron | 30.0% | |
| TGGTTTCTTTGTAAGAATCT+TGG | - | chr1_3:17422972-17422991 | Msa0107300:intron | 30.0% | |
| TTGTGATCGATCAAATAAAG+TGG | - | chr1_3:17423025-17423044 | Msa0107300:intron | 30.0% | |
| !!! | GAGCGATGAATATTTTTAGT+TGG | - | chr1_3:17423146-17423165 | Msa0107300:intron | 30.0% |
| ! | GATTTCACCCTTCTTATTTA+TGG | - | chr1_3:17423206-17423225 | Msa0107300:intron | 30.0% |
| CATACCACCATAAATAAGAA+GGG | + | chr1_3:17423216-17423235 | None:intergenic | 30.0% | |
| ACATACCACCATAAATAAGA+AGG | + | chr1_3:17423217-17423236 | None:intergenic | 30.0% | |
| TTAAAGAGGACAATTGATAG+GGG | + | chr1_3:17423388-17423407 | None:intergenic | 30.0% | |
| TCAGCAACATCTATTTAAAG+AGG | + | chr1_3:17423402-17423421 | None:intergenic | 30.0% | |
| CACAGACAGAAACTTATAAA+TGG | - | chr1_3:17423448-17423467 | Msa0107300:intron | 30.0% | |
| AGACAGAAACTTATAAATGG+TGG | - | chr1_3:17423451-17423470 | Msa0107300:intron | 30.0% | |
| AGTTAATTGAGAATATTGCG+AGG | - | chr1_3:17423487-17423506 | Msa0107300:intron | 30.0% | |
| ! | AGACGATTCAACTGATATTT+TGG | - | chr1_3:17423517-17423536 | Msa0107300:intron | 30.0% |
| ! | GACGATTCAACTGATATTTT+GGG | - | chr1_3:17423518-17423537 | Msa0107300:intron | 30.0% |
| ! | ACGATTCAACTGATATTTTG+GGG | - | chr1_3:17423519-17423538 | Msa0107300:intron | 30.0% |
| ! | GAAGCAATTTGACTTAGAAA+AGG | + | chr1_3:17423563-17423582 | None:intergenic | 30.0% |
| ! | CTCTTTTAGATATGTTCATG+TGG | + | chr1_3:17423937-17423956 | None:intergenic | 30.0% |
| ! | GGAACCTTAATTTTCACAAT+TGG | - | chr1_3:17424007-17424026 | Msa0107300:CDS | 30.0% |
| !! | AGATAGTTAATGGATTGAGA+GGG | - | chr1_3:17424050-17424069 | Msa0107300:CDS | 30.0% |
| GAAAAAGTTAAGAGGGATAA+AGG | + | chr1_3:17424217-17424236 | None:intergenic | 30.0% | |
| AGGGATTGAAAAAGTTAAGA+GGG | + | chr1_3:17424224-17424243 | None:intergenic | 30.0% | |
| AAGGGATTGAAAAAGTTAAG+AGG | + | chr1_3:17424225-17424244 | None:intergenic | 30.0% | |
| TTGGGAATAGATAACTCATT+TGG | + | chr1_3:17424255-17424274 | None:intergenic | 30.0% | |
| CTTTATTAGAGGACATATCT+TGG | + | chr1_3:17424274-17424293 | None:intergenic | 30.0% | |
| ! | ATTTTGCTACTCATTTCTCA+AGG | + | chr1_3:17424428-17424447 | None:intergenic | 30.0% |
| AAAGGAAACTTCACCAAAAA+TGG | - | chr1_3:17424540-17424559 | Msa0107300:intron | 30.0% | |
| !!! | GTTTGTTTTGCTTCCATTTT+TGG | + | chr1_3:17424556-17424575 | None:intergenic | 30.0% |
| ! | AATGGATTCTTGAATGGTAT+AGG | + | chr1_3:17424853-17424872 | None:intergenic | 30.0% |
| ! | ACATACAATGGATTCTTGAA+TGG | + | chr1_3:17424859-17424878 | None:intergenic | 30.0% |
| ! | GAAATTTTGTCAACCTGAAT+TGG | + | chr1_3:17424895-17424914 | None:intergenic | 30.0% |
| ! | CATTTCTAAGAAACAACGTT+TGG | + | chr1_3:17424990-17425009 | None:intergenic | 30.0% |
| GTAGACTCATATATACATAG+AGG | - | chr1_3:17425014-17425033 | Msa0107300:intron | 30.0% | |
| AGACTCATATATACATAGAG+GGG | - | chr1_3:17425016-17425035 | Msa0107300:intron | 30.0% | |
| ! | ACTTGCACCTTAGTATTTTT+AGG | + | chr1_3:17425060-17425079 | None:intergenic | 30.0% |
| AAATGGGTGTAAATTAGTGA+AGG | + | chr1_3:17425128-17425147 | None:intergenic | 30.0% | |
| AAAAGACAATGACATGCTTA+AGG | + | chr1_3:17425205-17425224 | None:intergenic | 30.0% | |
| TACAAGTTAATATGGAGGTT+GGG | + | chr1_3:17425491-17425510 | None:intergenic | 30.0% | |
| ATACAAGTTAATATGGAGGT+TGG | + | chr1_3:17425492-17425511 | None:intergenic | 30.0% | |
| ATGCTACAACAGATTTGAAG+CGG | + | chr1_3:17417489-17417508 | None:intergenic | 35.0% | |
| CTTCAAATCTGTTGTAGCAT+TGG | - | chr1_3:17417489-17417508 | Msa0107300:exon | 35.0% | |
| TGCTTTGCTCATAGTGTTTA+TGG | - | chr1_3:17417710-17417729 | Msa0107300:intron | 35.0% | |
| AAATAACTGTTCTTATCCGC+AGG | + | chr1_3:17417741-17417760 | None:intergenic | 35.0% | |
| TGCGGATAAGAACAGTTATT+TGG | - | chr1_3:17417740-17417759 | Msa0107300:intron | 35.0% | |
| GCGGATAAGAACAGTTATTT+GGG | - | chr1_3:17417741-17417760 | Msa0107300:intron | 35.0% | |
| ATTTGGGTCGAAAAATATCC+AGG | - | chr1_3:17417757-17417776 | Msa0107300:intron | 35.0% | |
| GCCCAAATTAATCAATTACC+TGG | + | chr1_3:17417778-17417797 | None:intergenic | 35.0% | |
| TTCCATGTTAACCGATCTTA+TGG | - | chr1_3:17417960-17417979 | Msa0107300:intron | 35.0% | |
| AACCATAAGATCGGTTAACA+TGG | + | chr1_3:17417965-17417984 | None:intergenic | 35.0% | |
| GCAAGTTGCACCAATTAATT+TGG | - | chr1_3:17418028-17418047 | Msa0107300:intron | 35.0% | |
| TTCTCATCGAAGATTGTTTC+TGG | - | chr1_3:17418129-17418148 | Msa0107300:intron | 35.0% | |
| CATAGGCAAAAACTGCATAA+AGG | + | chr1_3:17418811-17418830 | None:intergenic | 35.0% | |
| AGACAAGTATGGATATGGTT+GGG | - | chr1_3:17419019-17419038 | Msa0107300:intron | 35.0% | |
| TTAATTTCTTTGTTGGAGGC+TGG | - | chr1_3:17419067-17419086 | Msa0107300:intron | 35.0% | |
| AATAGTTGCATGTTAGTACC+TGG | - | chr1_3:17419091-17419110 | Msa0107300:intron | 35.0% | |
| GAAACACTTTATATGCAGCA+TGG | - | chr1_3:17419124-17419143 | Msa0107300:intron | 35.0% | |
| ACAAAATCAAGCACTTGTGA+AGG | + | chr1_3:17419183-17419202 | None:intergenic | 35.0% | |
| CAAAATCATCTTGACGGAAA+TGG | + | chr1_3:17419499-17419518 | None:intergenic | 35.0% | |
| ACTCGGAAATATCATCTTGA+CGG | + | chr1_3:17419538-17419557 | None:intergenic | 35.0% | |
| CAAGATGATATTTCCGAGTT+TGG | - | chr1_3:17419539-17419558 | Msa0107300:intron | 35.0% | |
| !! | AGAGCTCTTGACACTTTTTA+AGG | + | chr1_3:17420112-17420131 | None:intergenic | 35.0% |
| TTGATGTGTATTTGCGTATG+TGG | - | chr1_3:17420276-17420295 | Msa0107300:intron | 35.0% | |
| TGTTCAAATAGCAATGGAGA+TGG | - | chr1_3:17420563-17420582 | Msa0107300:intron | 35.0% | |
| GTTCAAATAGCAATGGAGAT+GGG | - | chr1_3:17420564-17420583 | Msa0107300:intron | 35.0% | |
| AAAGCAGAAAACTGGAACAA+GGG | + | chr1_3:17420595-17420614 | None:intergenic | 35.0% | |
| !!! | TTACTATTTTTGGTGGTGTC+CGG | - | chr1_3:17420725-17420744 | Msa0107300:intron | 35.0% |
| ! | CTTAAAAAAGGCTGGTTGAT+TGG | + | chr1_3:17420849-17420868 | None:intergenic | 35.0% |
| !!! | CAATCAACCAGCCTTTTTTA+AGG | - | chr1_3:17420847-17420866 | Msa0107300:intron | 35.0% |
| AGACAACATCATCTTCAAAG+TGG | - | chr1_3:17420881-17420900 | Msa0107300:intron | 35.0% | |
| GACTCCACATCATTTAATCT+AGG | + | chr1_3:17420944-17420963 | None:intergenic | 35.0% | |
| ! | TTTCCTTTAGGTTTAAGGCA+AGG | - | chr1_3:17421157-17421176 | Msa0107300:intron | 35.0% |
| ATCATCTGCATAATGACGAT+GGG | + | chr1_3:17421202-17421221 | None:intergenic | 35.0% | |
| TATCATCTGCATAATGACGA+TGG | + | chr1_3:17421203-17421222 | None:intergenic | 35.0% | |
| TGAGAATCTATGGACTCTTA+AGG | - | chr1_3:17421248-17421267 | Msa0107300:intron | 35.0% | |
| ! | AGGTCTAAAACACCATATGA+TGG | + | chr1_3:17421274-17421293 | None:intergenic | 35.0% |
| ! | CTAACTTGTAGTCCCAAAAT+AGG | + | chr1_3:17421294-17421313 | None:intergenic | 35.0% |
| ATCATATGTGTCAATGTGAG+AGG | - | chr1_3:17421329-17421348 | Msa0107300:intron | 35.0% | |
| ! | TTTAATTCGGTTTGCCTTTG+AGG | - | chr1_3:17421365-17421384 | Msa0107300:intron | 35.0% |
| ! | TTAATTCGGTTTGCCTTTGA+GGG | - | chr1_3:17421366-17421385 | Msa0107300:intron | 35.0% |
| GTATCAGTACTTGGAGTAAT+AGG | - | chr1_3:17421440-17421459 | Msa0107300:intron | 35.0% | |
| TCGTGTTATGCCCTTTAATT+CGG | - | chr1_3:17421480-17421499 | Msa0107300:intron | 35.0% | |
| ATTCACAACTGAAAGGTAGA+AGG | + | chr1_3:17421524-17421543 | None:intergenic | 35.0% | |
| CTACCTTTCAGTTGTGAATT+CGG | - | chr1_3:17421525-17421544 | Msa0107300:intron | 35.0% | |
| CCCAACAAAGGATAAAAGTT+AGG | + | chr1_3:17421752-17421771 | None:intergenic | 35.0% | |
| ATGTAAAGAGATCCCAACAA+AGG | + | chr1_3:17421764-17421783 | None:intergenic | 35.0% | |
| TTTGTTGGGATCTCTTTACA+TGG | - | chr1_3:17421763-17421782 | Msa0107300:intron | 35.0% | |
| TTGGGAGAGATTATAGGATT+TGG | + | chr1_3:17421836-17421855 | None:intergenic | 35.0% | |
| !! | AGGATTTTGGGAGAGATTAT+AGG | + | chr1_3:17421842-17421861 | None:intergenic | 35.0% |
| AACCTATAGAGACCAAAAGA+GGG | + | chr1_3:17421897-17421916 | None:intergenic | 35.0% | |
| AAACCTATAGAGACCAAAAG+AGG | + | chr1_3:17421898-17421917 | None:intergenic | 35.0% | |
| ! | AAGTAGAAAGCACATGTTTG+GGG | + | chr1_3:17421946-17421965 | None:intergenic | 35.0% |
| TTAGCCCTTAAACATCAGAT+AGG | - | chr1_3:17421977-17421996 | Msa0107300:intron | 35.0% | |
| TACCATACCTTTAGATCGAT+GGG | - | chr1_3:17422159-17422178 | Msa0107300:intron | 35.0% | |
| AAGTAAAGGTTCAATCTCGT+CGG | + | chr1_3:17422217-17422236 | None:intergenic | 35.0% | |
| AACCTTTACTTCTTCAACCA+TGG | - | chr1_3:17422226-17422245 | Msa0107300:intron | 35.0% | |
| ACCTTTACTTCTTCAACCAT+GGG | - | chr1_3:17422227-17422246 | Msa0107300:intron | 35.0% | |
| CTCAAAATCCTAGCGTAATT+GGG | + | chr1_3:17422285-17422304 | None:intergenic | 35.0% | |
| !! | GAAGCAAGGATATTTTCAAG+AGG | + | chr1_3:17422364-17422383 | None:intergenic | 35.0% |
| CCTTAAAGAACAAGGGTAAT+TGG | + | chr1_3:17422386-17422405 | None:intergenic | 35.0% | |
| CCAATTACCCTTGTTCTTTA+AGG | - | chr1_3:17422383-17422402 | Msa0107300:intron | 35.0% | |
| TCTATGGGGTAAAAAAGAGA+TGG | + | chr1_3:17422426-17422445 | None:intergenic | 35.0% | |
| ! | TTACTAGAGCATCACATACA+AGG | - | chr1_3:17422484-17422503 | Msa0107300:intron | 35.0% |
| GAAAAATGGATGCACCATAA+TGG | + | chr1_3:17422524-17422543 | None:intergenic | 35.0% | |
| ! | ATTTTCCCAATAGTAGGACT+AGG | + | chr1_3:17422551-17422570 | None:intergenic | 35.0% |
| ! | ATGAGGATTTTCCCAATAGT+AGG | + | chr1_3:17422557-17422576 | None:intergenic | 35.0% |
| GTAAAGAACAAATGAGAAGG+CGG | + | chr1_3:17422696-17422715 | None:intergenic | 35.0% | |
| TTTGTTCTTTACTTGTGGGA+TGG | - | chr1_3:17422704-17422723 | Msa0107300:intron | 35.0% | |
| !! | TTAGCTTTTCCAGAGTCTTA+TGG | - | chr1_3:17422804-17422823 | Msa0107300:intron | 35.0% |
| GAATTTGACACGTTCTTATG+TGG | - | chr1_3:17422857-17422876 | Msa0107300:intron | 35.0% | |
| TTCTATGGAAGGAAAACCAT+TGG | - | chr1_3:17422911-17422930 | Msa0107300:intron | 35.0% | |
| TCTATGGAAGGAAAACCATT+GGG | - | chr1_3:17422912-17422931 | Msa0107300:intron | 35.0% | |
| ! | TTGGTCATACCCTTTTATTC+AGG | - | chr1_3:17422991-17423010 | Msa0107300:intron | 35.0% |
| ! | TGGTCATACCCTTTTATTCA+GGG | - | chr1_3:17422992-17423011 | Msa0107300:intron | 35.0% |
| TGATCGATCAAATAAAGTGG+TGG | - | chr1_3:17423028-17423047 | Msa0107300:intron | 35.0% | |
| ! | TTTAGTTGGCTTAGTGATGA+TGG | - | chr1_3:17423160-17423179 | Msa0107300:intron | 35.0% |
| ! | TTAGTTGGCTTAGTGATGAT+GGG | - | chr1_3:17423161-17423180 | Msa0107300:intron | 35.0% |
| ! | TTCACCCTTCTTATTTATGG+TGG | - | chr1_3:17423209-17423228 | Msa0107300:intron | 35.0% |
| !! | TGGTGGTATGTTTCTGTTTT+TGG | - | chr1_3:17423226-17423245 | Msa0107300:intron | 35.0% |
| TTCTGTCTGTGACCAAAAAA+AGG | + | chr1_3:17423439-17423458 | None:intergenic | 35.0% | |
| ! | TATAAATGGTGGAAAGTTCC+TGG | - | chr1_3:17423462-17423481 | Msa0107300:intron | 35.0% |
| TCTCCGTTAGATTTCATGAA+TGG | - | chr1_3:17423820-17423839 | Msa0107300:intron | 35.0% | |
| CTCCGTTAGATTTCATGAAT+GGG | - | chr1_3:17423821-17423840 | Msa0107300:intron | 35.0% | |
| GACCCATTCATGAAATCTAA+CGG | + | chr1_3:17423826-17423845 | None:intergenic | 35.0% | |
| !! | GAGATAGTTAATGGATTGAG+AGG | - | chr1_3:17424049-17424068 | Msa0107300:CDS | 35.0% |
| AGAATGTTAGCATTCGAGAT+TGG | + | chr1_3:17424097-17424116 | None:intergenic | 35.0% | |
| AACTCATTTGGTTGAGCTAA+GGG | + | chr1_3:17424243-17424262 | None:intergenic | 35.0% | |
| TAACTCATTTGGTTGAGCTA+AGG | + | chr1_3:17424244-17424263 | None:intergenic | 35.0% | |
| !! | TACTCCACTCATCACTTTTA+TGG | + | chr1_3:17424477-17424496 | None:intergenic | 35.0% |
| AAGTGATGAGTGGAGTAAAT+AGG | - | chr1_3:17424480-17424499 | Msa0107300:intron | 35.0% | |
| TGGTATAGGAGATCTATAAG+AGG | + | chr1_3:17424839-17424858 | None:intergenic | 35.0% | |
| ATATATACCTGCTCTCTTGT+TGG | + | chr1_3:17424922-17424941 | None:intergenic | 35.0% | |
| ! | TGCTCAACTATTTTCACCAT+CGG | - | chr1_3:17424950-17424969 | Msa0107300:intron | 35.0% |
| GACTCATATATACATAGAGG+GGG | - | chr1_3:17425017-17425036 | Msa0107300:intron | 35.0% | |
| ACACCCACCTAAAAATACTA+AGG | - | chr1_3:17425050-17425069 | Msa0107300:intron | 35.0% | |
| !!! | GCACCTTAGTATTTTTAGGT+GGG | + | chr1_3:17425056-17425075 | None:intergenic | 35.0% |
| !!! | TGCACCTTAGTATTTTTAGG+TGG | + | chr1_3:17425057-17425076 | None:intergenic | 35.0% |
| !!! | ACTTGCACCTTAGTGTTTTT+TGG | - | chr1_3:17425344-17425363 | Msa0107300:intron | 35.0% |
| ACATCCACCAAAAAACACTA+AGG | + | chr1_3:17425354-17425373 | None:intergenic | 35.0% | |
| !! | TCATCGAAGATTGTTTCTGG+TGG | - | chr1_3:17418132-17418151 | Msa0107300:intron | 40.0% |
| AAAAACTGAGTGTGGCTCAT+AGG | + | chr1_3:17418828-17418847 | None:intergenic | 40.0% | |
| ! | CCACACTCAGTTTTTCCATT+CGG | - | chr1_3:17418833-17418852 | Msa0107300:intron | 40.0% |
| ! | AGAAGTGCAAATATGCCGAA+TGG | + | chr1_3:17418851-17418870 | None:intergenic | 40.0% |
| GAGACAAGTATGGATATGGT+TGG | - | chr1_3:17419018-17419037 | Msa0107300:intron | 40.0% | |
| ! | ATGGTTGGGTTTTACATCAG+TGG | - | chr1_3:17419033-17419052 | Msa0107300:intron | 40.0% |
| ! | GCTGCATATAAAGTGTTTCG+CGG | + | chr1_3:17419123-17419142 | None:intergenic | 40.0% |
| ! | CTTGATTTTGTGTAGACCTG+TGG | - | chr1_3:17419192-17419211 | Msa0107300:intron | 40.0% |
| GCAAATGGTGCTTACATACA+GGG | + | chr1_3:17419362-17419381 | None:intergenic | 40.0% | |
| TGCAAATGGTGCTTACATAC+AGG | + | chr1_3:17419363-17419382 | None:intergenic | 40.0% | |
| ATCATCTTGACGGAAATGGA+AGG | + | chr1_3:17419495-17419514 | None:intergenic | 40.0% | |
| GTGCTTAGATATAGAAACCG+AGG | - | chr1_3:17419901-17419920 | Msa0107300:intron | 40.0% | |
| AAGCAGAAAACTGGAACAAG+GGG | + | chr1_3:17420594-17420613 | None:intergenic | 40.0% | |
| CAAAGCAGAAAACTGGAACA+AGG | + | chr1_3:17420596-17420615 | None:intergenic | 40.0% | |
| ! | CTTGTTCCAGTTTTCTGCTT+TGG | - | chr1_3:17420594-17420613 | Msa0107300:intron | 40.0% |
| GGACACCACCAAAAATAGTA+AGG | + | chr1_3:17420726-17420745 | None:intergenic | 40.0% | |
| ATGAGCTTAACTCAGTCGAT+GGG | + | chr1_3:17420790-17420809 | None:intergenic | 40.0% | |
| ! | AAAAAAGGCTGGTTGATTGG+AGG | + | chr1_3:17420846-17420865 | None:intergenic | 40.0% |
| CAGTGGATGACTATACTTGA+GGG | + | chr1_3:17421073-17421092 | None:intergenic | 40.0% | |
| ! | TCCTTTTATGTTCCTCCTAG+TGG | - | chr1_3:17421095-17421114 | Msa0107300:intron | 40.0% |
| ACCACTAGGAGGAACATAAA+AGG | + | chr1_3:17421099-17421118 | None:intergenic | 40.0% | |
| ACTCCTTGCCTTAAACCTAA+AGG | + | chr1_3:17421163-17421182 | None:intergenic | 40.0% | |
| ! | AGGTTTAAGGCAAGGAGTTA+TGG | - | chr1_3:17421165-17421184 | Msa0107300:intron | 40.0% |
| GCAGATGATACTTTGTTCCT+CGG | - | chr1_3:17421213-17421232 | Msa0107300:intron | 40.0% | |
| AAAAGAGGATTCACCCTCAA+AGG | + | chr1_3:17421382-17421401 | None:intergenic | 40.0% | |
| ! | TTTGAGGGTGAATCCTCTTT+TGG | - | chr1_3:17421381-17421400 | Msa0107300:intron | 40.0% |
| TGTCATGTACACTCCAAAAG+AGG | + | chr1_3:17421397-17421416 | None:intergenic | 40.0% | |
| GAAGTAAGGGCCGAATTAAA+GGG | + | chr1_3:17421493-17421512 | None:intergenic | 40.0% | |
| TGAAGTAAGGGCCGAATTAA+AGG | + | chr1_3:17421494-17421513 | None:intergenic | 40.0% | |
| ACAACTGAAAGGTAGAAGGT+GGG | + | chr1_3:17421520-17421539 | None:intergenic | 40.0% | |
| GATCCGAATTCACAACTGAA+AGG | + | chr1_3:17421531-17421550 | None:intergenic | 40.0% | |
| ! | CCAAAAGAGGGAACCTTTTA+AGG | + | chr1_3:17421885-17421904 | None:intergenic | 40.0% |
| ! | CCTTAAAAGGTTCCCTCTTT+TGG | - | chr1_3:17421882-17421901 | Msa0107300:intron | 40.0% |
| ! | TTCCCTCTTTTGGTCTCTAT+AGG | - | chr1_3:17421892-17421911 | Msa0107300:intron | 40.0% |
| GACAACATATGGGGATTTCA+AGG | - | chr1_3:17422118-17422137 | Msa0107300:intron | 40.0% | |
| CTACCATACCTTTAGATCGA+TGG | - | chr1_3:17422158-17422177 | Msa0107300:intron | 40.0% | |
| ACCATACCTTTAGATCGATG+GGG | - | chr1_3:17422160-17422179 | Msa0107300:intron | 40.0% | |
| TCCCATGGTTGAAGAAGTAA+AGG | + | chr1_3:17422231-17422250 | None:intergenic | 40.0% | |
| AAAATCCTAGCGTAATTGGG+TGG | + | chr1_3:17422282-17422301 | None:intergenic | 40.0% | |
| CCTCAAAATCCTAGCGTAAT+TGG | + | chr1_3:17422286-17422305 | None:intergenic | 40.0% | |
| ! | CCAATTACGCTAGGATTTTG+AGG | - | chr1_3:17422283-17422302 | Msa0107300:intron | 40.0% |
| GACGAAATTGATCAATCCAG+GGG | + | chr1_3:17422342-17422361 | None:intergenic | 40.0% | |
| GGACGAAATTGATCAATCCA+GGG | + | chr1_3:17422343-17422362 | None:intergenic | 40.0% | |
| AGGACGAAATTGATCAATCC+AGG | + | chr1_3:17422344-17422363 | None:intergenic | 40.0% | |
| AACAAGGGTAATTGGAAGCA+AGG | + | chr1_3:17422378-17422397 | None:intergenic | 40.0% | |
| GGGGTAAAAAAGAGATGGTA+TGG | + | chr1_3:17422421-17422440 | None:intergenic | 40.0% | |
| TAGGACTAGGCAGAGAAAAA+TGG | + | chr1_3:17422538-17422557 | None:intergenic | 40.0% | |
| ACAATGTTAGCGAACCTTAG+TGG | - | chr1_3:17422636-17422655 | Msa0107300:intron | 40.0% | |
| ACTCAAAGGAGATACCACTA+AGG | + | chr1_3:17422653-17422672 | None:intergenic | 40.0% | |
| TGAGGCATAGTACAACTCAA+AGG | + | chr1_3:17422667-17422686 | None:intergenic | 40.0% | |
| !! | CTTTTCCAGAGTCTTATGGT+GGG | - | chr1_3:17422808-17422827 | Msa0107300:intron | 40.0% |
| CTATGGAAGGAAAACCATTG+GGG | - | chr1_3:17422913-17422932 | Msa0107300:intron | 40.0% | |
| AAAACCATTGGGGAGAATAG+TGG | - | chr1_3:17422923-17422942 | Msa0107300:intron | 40.0% | |
| ! | GGTCATACCCTTTTATTCAG+GGG | - | chr1_3:17422993-17423012 | Msa0107300:intron | 40.0% |
| !!! | CTGATATTTTGGGGAGTACT+CGG | - | chr1_3:17423528-17423547 | Msa0107300:intron | 40.0% |
| !!! | TGATATTTTGGGGAGTACTC+GGG | - | chr1_3:17423529-17423548 | Msa0107300:intron | 40.0% |
| TAGAACAGAGCTCAGTAACA+TGG | - | chr1_3:17423986-17424005 | Msa0107300:CDS | 40.0% | |
| AGCATTCGAGATTGGTAAGT+TGG | + | chr1_3:17424089-17424108 | None:intergenic | 40.0% | |
| TAGAGGACATACATTGGGAA+TGG | + | chr1_3:17424347-17424366 | None:intergenic | 40.0% | |
| CTCATTTCTCAAGGTAGATG+AGG | + | chr1_3:17424419-17424438 | None:intergenic | 40.0% | |
| ATGCAGAGAGAAATCAATCG+AGG | - | chr1_3:17424450-17424469 | Msa0107300:intron | 40.0% | |
| AGGACCATAAAAGTGATGAG+TGG | - | chr1_3:17424470-17424489 | Msa0107300:intron | 40.0% | |
| CTGCAAAGACTATGTTCCTA+AGG | + | chr1_3:17424594-17424613 | None:intergenic | 40.0% | |
| AGAGGAGAACAGATATCATG+AGG | + | chr1_3:17424821-17424840 | None:intergenic | 40.0% | |
| CAAGAATCCATTGTATGTCG+TGG | - | chr1_3:17424861-17424880 | Msa0107300:intron | 40.0% | |
| AATCCATTGTATGTCGTGGT+GGG | - | chr1_3:17424865-17424884 | Msa0107300:intron | 40.0% | |
| TTCACCATCGGATATACTTC+TGG | - | chr1_3:17424962-17424981 | Msa0107300:intron | 40.0% | |
| !!! | TGCACCTTAGTGTTTTTTGG+TGG | - | chr1_3:17425347-17425366 | Msa0107300:intron | 40.0% |
| AAGAAACTCACTGTGTACTC+TGG | + | chr1_3:17425537-17425556 | None:intergenic | 40.0% | |
| !!! | GTAGCATTGGCTCTGTGTTT+TGG | - | chr1_3:17417502-17417521 | Msa0107300:CDS | 45.0% |
| AGTGTTTATGGTGCTTCCTG+CGG | - | chr1_3:17417722-17417741 | Msa0107300:intron | 45.0% | |
| CGTCTAAGTGAAGCGTGATA+GGG | + | chr1_3:17417929-17417948 | None:intergenic | 45.0% | |
| TCGTCTAAGTGAAGCGTGAT+AGG | + | chr1_3:17417930-17417949 | None:intergenic | 45.0% | |
| CTGGTGGTTTAAGAGAGCAA+AGG | - | chr1_3:17418148-17418167 | Msa0107300:intron | 45.0% | |
| CCGAATGGAAAAACTGAGTG+TGG | + | chr1_3:17418836-17418855 | None:intergenic | 45.0% | |
| AGTTGCATGTTAGTACCTGG+TGG | - | chr1_3:17419094-17419113 | Msa0107300:intron | 45.0% | |
| ATGGTGCTTACATACAGGGA+CGG | + | chr1_3:17419358-17419377 | None:intergenic | 45.0% | |
| AGCAGAAAACTGGAACAAGG+GGG | + | chr1_3:17420593-17420612 | None:intergenic | 45.0% | |
| ! | TCCAGTTTTCTGCTTTGGTC+AGG | - | chr1_3:17420599-17420618 | Msa0107300:intron | 45.0% |
| ACCTGACCAAAGCAGAAAAC+TGG | + | chr1_3:17420603-17420622 | None:intergenic | 45.0% | |
| AAGGTTCAGGGTTCAAACTC+CGG | + | chr1_3:17420747-17420766 | None:intergenic | 45.0% | |
| TGAGCTTAACTCAGTCGATG+GGG | + | chr1_3:17420789-17420808 | None:intergenic | 45.0% | |
| CATGAGCTTAACTCAGTCGA+TGG | + | chr1_3:17420791-17420810 | None:intergenic | 45.0% | |
| AATGATGTGGAGTCACGCTT+TGG | - | chr1_3:17420950-17420969 | Msa0107300:intron | 45.0% | |
| CCAGTGGATGACTATACTTG+AGG | + | chr1_3:17421074-17421093 | None:intergenic | 45.0% | |
| CCTCAAGTATAGTCATCCAC+TGG | - | chr1_3:17421071-17421090 | Msa0107300:intron | 45.0% | |
| AGGAACATAAAAGGAGCCAG+TGG | + | chr1_3:17421090-17421109 | None:intergenic | 45.0% | |
| TATGTTCCTCCTAGTGGTAG+AGG | - | chr1_3:17421101-17421120 | Msa0107300:intron | 45.0% | |
| ATGTTCCTCCTAGTGGTAGA+GGG | - | chr1_3:17421102-17421121 | Msa0107300:intron | 45.0% | |
| TCTCAACAAATGCTTCACCG+AGG | + | chr1_3:17421233-17421252 | None:intergenic | 45.0% | |
| GGACTCTTAAGGCCATCATA+TGG | - | chr1_3:17421259-17421278 | Msa0107300:intron | 45.0% | |
| AACTGAAAGGTAGAAGGTGG+GGG | + | chr1_3:17421518-17421537 | None:intergenic | 45.0% | |
| CAACTGAAAGGTAGAAGGTG+GGG | + | chr1_3:17421519-17421538 | None:intergenic | 45.0% | |
| CACAACTGAAAGGTAGAAGG+TGG | + | chr1_3:17421521-17421540 | None:intergenic | 45.0% | |
| CCTTGAACGATGCATAGGAA+GGG | + | chr1_3:17422040-17422059 | None:intergenic | 45.0% | |
| CCTTCCTATGCATCGTTCAA+GGG | - | chr1_3:17422038-17422057 | Msa0107300:intron | 45.0% | |
| ATCGTTCAAGGGAAGGTAGT+TGG | - | chr1_3:17422049-17422068 | Msa0107300:intron | 45.0% | |
| TCCCCATCGATCTAAAGGTA+TGG | + | chr1_3:17422164-17422183 | None:intergenic | 45.0% | |
| TGACATCCCCATCGATCTAA+AGG | + | chr1_3:17422169-17422188 | None:intergenic | 45.0% | |
| ACTCTAACCATCAACCACCA+TGG | - | chr1_3:17422188-17422207 | Msa0107300:intron | 45.0% | |
| GTGGAAGGATCGTCATGAAA+GGG | + | chr1_3:17422263-17422282 | None:intergenic | 45.0% | |
| TCTCTGCCTAGTCCTACTAT+TGG | - | chr1_3:17422542-17422561 | Msa0107300:CDS | 45.0% | |
| CTCTGCCTAGTCCTACTATT+GGG | - | chr1_3:17422543-17422562 | Msa0107300:CDS | 45.0% | |
| ATGAGAAGGCGGTTTAAGTG+AGG | + | chr1_3:17422685-17422704 | None:intergenic | 45.0% | |
| ATCGCATGAATCTTGCAGAG+GGG | + | chr1_3:17422780-17422799 | None:intergenic | 45.0% | |
| GATCGCATGAATCTTGCAGA+GGG | + | chr1_3:17422781-17422800 | None:intergenic | 45.0% | |
| TGATCGCATGAATCTTGCAG+AGG | + | chr1_3:17422782-17422801 | None:intergenic | 45.0% | |
| !! | GCTTTTCCAGAGTCTTATGG+TGG | - | chr1_3:17422807-17422826 | Msa0107300:intron | 45.0% |
| ACGGAGAGCTATGTTAGGTT+TGG | - | chr1_3:17422831-17422850 | Msa0107300:intron | 45.0% | |
| TTGTCCACTATTCTCCCCAA+TGG | + | chr1_3:17422930-17422949 | None:intergenic | 45.0% | |
| ! | CATACCCTTTTATTCAGGGG+AGG | - | chr1_3:17422996-17423015 | Msa0107300:intron | 45.0% |
| TCCACCTCCCCTGAATAAAA+GGG | + | chr1_3:17423003-17423022 | None:intergenic | 45.0% | |
| TTCCACCTCCCCTGAATAAA+AGG | + | chr1_3:17423004-17423023 | None:intergenic | 45.0% | |
| GTGATCGATCAGGTGAATCT+TGG | - | chr1_3:17423056-17423075 | Msa0107300:intron | 45.0% | |
| ATACTACTAGTCCGCCTAGA+AGG | + | chr1_3:17423121-17423140 | None:intergenic | 45.0% | |
| !! | TAGGCGGACTAGTAGTATGT+AGG | - | chr1_3:17423123-17423142 | Msa0107300:intron | 45.0% |
| !! | AGGCGGACTAGTAGTATGTA+GGG | - | chr1_3:17423124-17423143 | Msa0107300:intron | 45.0% |
| ATCAAGCGCCAATCTGAACA+AGG | - | chr1_3:17423687-17423706 | Msa0107300:intron | 45.0% | |
| ATCTAACATTGACCGGACGA+AGG | + | chr1_3:17423902-17423921 | None:intergenic | 45.0% | |
| !!! | ATTTTTAGTGGGGACCACTG+AGG | - | chr1_3:17424516-17424535 | Msa0107300:intron | 45.0% |
| TGAAGTTTCCTTTGCCTCAG+TGG | + | chr1_3:17424533-17424552 | None:intergenic | 45.0% | |
| GAATCCATTGTATGTCGTGG+TGG | - | chr1_3:17424864-17424883 | Msa0107300:intron | 45.0% | |
| ! | GGTTCCAGAAGTATATCCGA+TGG | + | chr1_3:17424969-17424988 | None:intergenic | 45.0% |
| !!! | CAAATATTTTTTTTTTTTTA+TGG | - | chr1_3:17417658-17417677 | Msa0107300:intron | 5.0% |
| !! | AAATTTATATTTAACATATT+TGG | - | chr1_3:17418215-17418234 | Msa0107300:CDS | 5.0% |
| !! | AATTTATATTTAACATATTT+GGG | - | chr1_3:17418216-17418235 | Msa0107300:CDS | 5.0% |
| !!! | TTATTTTCTTATTATTATAA+AGG | - | chr1_3:17420670-17420689 | Msa0107300:intron | 5.0% |
| !! | TATATATATATATATATATG+GGG | + | chr1_3:17425387-17425406 | None:intergenic | 5.0% |
| TTATATGCAGCATGGGTGCG+AGG | - | chr1_3:17419132-17419151 | Msa0107300:intron | 50.0% | |
| GTGCGAGGTACGTGACATTA+TGG | - | chr1_3:17419147-17419166 | Msa0107300:intron | 50.0% | |
| ! | TGTGATGACGTGCCCAAACT+CGG | + | chr1_3:17419555-17419574 | None:intergenic | 50.0% |
| ATTCCGGGGTAGAGTTCACT+AGG | - | chr1_3:17419613-17419632 | Msa0107300:CDS | 50.0% | |
| TGGAGTCACGCTTTGGTACT+AGG | - | chr1_3:17420957-17420976 | Msa0107300:intron | 50.0% | |
| AGTCACGCTTTGGTACTAGG+TGG | - | chr1_3:17420960-17420979 | Msa0107300:intron | 50.0% | |
| TGTTCCTCCTAGTGGTAGAG+GGG | - | chr1_3:17421103-17421122 | Msa0107300:intron | 50.0% | |
| GAAGGTGGGGGTTGAAGTAA+GGG | + | chr1_3:17421506-17421525 | None:intergenic | 50.0% | |
| AGAAGGTGGGGGTTGAAGTA+AGG | + | chr1_3:17421507-17421526 | None:intergenic | 50.0% | |
| CCCTTCCTATGCATCGTTCA+AGG | - | chr1_3:17422037-17422056 | Msa0107300:intron | 50.0% | |
| CCCTTGAACGATGCATAGGA+AGG | + | chr1_3:17422041-17422060 | None:intergenic | 50.0% | |
| CCTTCCCTTGAACGATGCAT+AGG | + | chr1_3:17422045-17422064 | None:intergenic | 50.0% | |
| CCTATGCATCGTTCAAGGGA+AGG | - | chr1_3:17422042-17422061 | Msa0107300:intron | 50.0% | |
| TTCAATCTCGTCGGACTCCA+TGG | + | chr1_3:17422208-17422227 | None:intergenic | 50.0% | |
| GAAGGATCGTCATGAAAGGG+CGG | + | chr1_3:17422260-17422279 | None:intergenic | 50.0% | |
| GGTGGAAGGATCGTCATGAA+AGG | + | chr1_3:17422264-17422283 | None:intergenic | 50.0% | |
| TCCTTCCACCCAATTACGCT+AGG | - | chr1_3:17422274-17422293 | Msa0107300:intron | 50.0% | |
| TCCTAGCGTAATTGGGTGGA+AGG | + | chr1_3:17422278-17422297 | None:intergenic | 50.0% | |
| GATCAATCCAGGGGCTTAAG+AGG | + | chr1_3:17422333-17422352 | None:intergenic | 50.0% | |
| GACGAAGAGCAGACTCTATG+GGG | + | chr1_3:17422440-17422459 | None:intergenic | 50.0% | |
| GGACGAAGAGCAGACTCTAT+GGG | + | chr1_3:17422441-17422460 | None:intergenic | 50.0% | |
| AGGACGAAGAGCAGACTCTA+TGG | + | chr1_3:17422442-17422461 | None:intergenic | 50.0% | |
| GGGATGGTCCTTCTTGCATA+TGG | - | chr1_3:17422720-17422739 | Msa0107300:intron | 50.0% | |
| ! | TCCAGAGTCTTATGGTGGGA+CGG | - | chr1_3:17422812-17422831 | Msa0107300:intron | 50.0% |
| ! | ACCCTTTTATTCAGGGGAGG+TGG | - | chr1_3:17422999-17423018 | Msa0107300:intron | 50.0% |
| GGTGGAACTTGTGATCGATC+AGG | - | chr1_3:17423017-17423036 | Msa0107300:intron | 50.0% | |
| CTAGAAGGTGAGAGGAAGGA+TGG | + | chr1_3:17423106-17423125 | None:intergenic | 50.0% | |
| CATCCTTCCTCTCACCTTCT+AGG | - | chr1_3:17423104-17423123 | Msa0107300:intron | 50.0% | |
| !! | GTTGGCTTAGTGATGATGGG+TGG | - | chr1_3:17423164-17423183 | Msa0107300:intron | 50.0% |
| ! | CAGATTGGCGCTTGATTCGT+GGG | + | chr1_3:17423683-17423702 | None:intergenic | 50.0% |
| ! | TCAGATTGGCGCTTGATTCG+TGG | + | chr1_3:17423684-17423703 | None:intergenic | 50.0% |
| CATTGACCGGACGAAGGTTA+GGG | + | chr1_3:17423896-17423915 | None:intergenic | 50.0% | |
| ACATTGACCGGACGAAGGTT+AGG | + | chr1_3:17423897-17423916 | None:intergenic | 50.0% | |
| CTACCCACCACGACATACAA+TGG | + | chr1_3:17424871-17424890 | None:intergenic | 50.0% | |
| TTCGGAACCAACAAGAGAGC+AGG | - | chr1_3:17424912-17424931 | Msa0107300:intron | 50.0% | |
| ATATGGAGGTTGGGTCACCT+GGG | + | chr1_3:17425482-17425501 | None:intergenic | 50.0% | |
| AATATGGAGGTTGGGTCACC+TGG | + | chr1_3:17425483-17425502 | None:intergenic | 50.0% | |
| GAACGACACAAGACTCAAGC+TGG | - | chr1_3:17425578-17425597 | Msa0107300:CDS | 50.0% | |
| AGTGTTTCGCGGTTTCCACC+AGG | + | chr1_3:17419112-17419131 | None:intergenic | 55.0% | |
| TCGCCTAGTGAACTCTACCC+CGG | + | chr1_3:17419619-17419638 | None:intergenic | 55.0% | |
| GCAGCTGCTCATGTACTTGC+AGG | - | chr1_3:17419648-17419667 | Msa0107300:CDS | 55.0% | |
| GTTCCTCCTAGTGGTAGAGG+GGG | - | chr1_3:17421104-17421123 | Msa0107300:intron | 55.0% | |
| TCGGACTCCATGGTGGTTGA+TGG | + | chr1_3:17422198-17422217 | None:intergenic | 55.0% | |
| AATCTCGTCGGACTCCATGG+TGG | + | chr1_3:17422205-17422224 | None:intergenic | 55.0% | |
| GATCGTCATGAAAGGGCGGA+AGG | + | chr1_3:17422256-17422275 | None:intergenic | 55.0% | |
| ACCACAACCTCTTAAGCCCC+TGG | - | chr1_3:17422323-17422342 | Msa0107300:intron | 55.0% | |
| TCCAGGGGCTTAAGAGGTTG+TGG | + | chr1_3:17422327-17422346 | None:intergenic | 55.0% | |
| TCCGTCCCACCATAAGACTC+TGG | + | chr1_3:17422816-17422835 | None:intergenic | 55.0% | |
| GTGGGACGGAGAGCTATGTT+AGG | - | chr1_3:17422826-17422845 | Msa0107300:intron | 55.0% | |
| CCTTCCTCTCACCTTCTAGG+CGG | - | chr1_3:17423107-17423126 | Msa0107300:intron | 55.0% | |
| TAGTCCGCCTAGAAGGTGAG+AGG | + | chr1_3:17423114-17423133 | None:intergenic | 55.0% | |
| GTCAAGCCCTAACCTTCGTC+CGG | - | chr1_3:17423887-17423906 | Msa0107300:intron | 55.0% | |
| !! | CGTGGTGGGTAGACCAATTC+AGG | - | chr1_3:17424879-17424898 | Msa0107300:intron | 55.0% |
| CGCTTTGGTACTAGGTGGCG+TGG | - | chr1_3:17420965-17420984 | Msa0107300:intron | 60.0% | |
| TTGGTACTAGGTGGCGTGGC+TGG | - | chr1_3:17420969-17420988 | Msa0107300:intron | 60.0% | |
| ATCGCACCCCCTCTACCACT+AGG | + | chr1_3:17421113-17421132 | None:intergenic | 60.0% | |
| ! | GTGGTAGAGGGGGTGCGATT+AGG | - | chr1_3:17421114-17421133 | Msa0107300:intron | 60.0% |
| AAAGGGCGGAAGGCTTCCCA+TGG | + | chr1_3:17422246-17422265 | None:intergenic | 60.0% | |
| CCGCCTAGAAGGTGAGAGGA+AGG | + | chr1_3:17423110-17423129 | None:intergenic | 60.0% | |
| AGTGGGGACCACTGAGGCAA+AGG | - | chr1_3:17424522-17424541 | Msa0107300:intron | 60.0% | |
| GCACCCCCTCTACCACTAGG+AGG | + | chr1_3:17421110-17421129 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17417463 | 17425663 | 17417463 | ID=Msa0107300;Name=Msa0107300 |
| chr1_3 | mRNA | 17417463 | 17425663 | 17417463 | ID=Msa0107300-mRNA-1;Parent=Msa0107300;Name=Msa0107300-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.37|0.33|1|1|1|9|32|308 |
| chr1_3 | exon | 17417463 | 17417596 | 17417463 | ID=Msa0107300-mRNA-1:exon:6590;Parent=Msa0107300-mRNA-1 |
| chr1_3 | exon | 17418193 | 17418280 | 17418193 | ID=Msa0107300-mRNA-1:exon:6589;Parent=Msa0107300-mRNA-1 |
| chr1_3 | exon | 17419576 | 17419673 | 17419576 | ID=Msa0107300-mRNA-1:exon:6588;Parent=Msa0107300-mRNA-1 |
| chr1_3 | exon | 17422506 | 17422592 | 17422506 | ID=Msa0107300-mRNA-1:exon:6587;Parent=Msa0107300-mRNA-1 |
| chr1_3 | exon | 17423973 | 17424128 | 17423973 | ID=Msa0107300-mRNA-1:exon:6586;Parent=Msa0107300-mRNA-1 |
| chr1_3 | exon | 17424204 | 17424307 | 17424204 | ID=Msa0107300-mRNA-1:exon:6585;Parent=Msa0107300-mRNA-1 |
| chr1_3 | exon | 17425145 | 17425230 | 17425145 | ID=Msa0107300-mRNA-1:exon:6584;Parent=Msa0107300-mRNA-1 |
| chr1_3 | exon | 17425348 | 17425422 | 17425348 | ID=Msa0107300-mRNA-1:exon:6583;Parent=Msa0107300-mRNA-1 |
| chr1_3 | exon | 17425533 | 17425663 | 17425533 | ID=Msa0107300-mRNA-1:exon:6582;Parent=Msa0107300-mRNA-1 |
| chr1_3 | CDS | 17425533 | 17425663 | 17425533 | ID=Msa0107300-mRNA-1:cds;Parent=Msa0107300-mRNA-1 |
| chr1_3 | CDS | 17425348 | 17425422 | 17425348 | ID=Msa0107300-mRNA-1:cds;Parent=Msa0107300-mRNA-1 |
| chr1_3 | CDS | 17425145 | 17425230 | 17425145 | ID=Msa0107300-mRNA-1:cds;Parent=Msa0107300-mRNA-1 |
| chr1_3 | CDS | 17424204 | 17424307 | 17424204 | ID=Msa0107300-mRNA-1:cds;Parent=Msa0107300-mRNA-1 |
| chr1_3 | CDS | 17423973 | 17424128 | 17423973 | ID=Msa0107300-mRNA-1:cds;Parent=Msa0107300-mRNA-1 |
| chr1_3 | CDS | 17422506 | 17422592 | 17422506 | ID=Msa0107300-mRNA-1:cds;Parent=Msa0107300-mRNA-1 |
| chr1_3 | CDS | 17419576 | 17419673 | 17419576 | ID=Msa0107300-mRNA-1:cds;Parent=Msa0107300-mRNA-1 |
| chr1_3 | CDS | 17418193 | 17418280 | 17418193 | ID=Msa0107300-mRNA-1:cds;Parent=Msa0107300-mRNA-1 |
| chr1_3 | CDS | 17417495 | 17417596 | 17417495 | ID=Msa0107300-mRNA-1:cds;Parent=Msa0107300-mRNA-1 |
| chr1_3 | three_prime_UTR | 17417463 | 17417494 | 17417463 | ID=Msa0107300-mRNA-1:three_prime_utr;Parent=Msa0107300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
