Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107440 | XP_013466792.1 | 91.720 | 314 | 20 | 2 | 1 | 308 | 1 | 314 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107440 | sp|K7K424|DAT2D_SOYBN | 59.868 | 304 | 121 | 1 | 6 | 308 | 26 | 329 | 6.57e-135 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107440 | A0A072VHE2 | 91.720 | 314 | 20 | 2 | 1 | 308 | 1 | 314 | 0.0 | 583 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107300 | Msa0107440 | 0.962149 | 1.553590e-120 | -8.615850e-47 |
| Msa0107440 | Msa1150970 | 0.808461 | 3.062454e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107440 | MtrunA17_Chr8g0369951 | 62.046 | 303 | 114 | 1 | 7 | 308 | 16 | 318 | 5.39e-141 | 400 |
| Msa0107440 | MtrunA17_Chr5g0407691 | 60.066 | 303 | 120 | 1 | 7 | 308 | 19 | 321 | 8.30e-139 | 395 |
| Msa0107440 | MtrunA17_Chr1g0163481 | 89.474 | 190 | 14 | 2 | 1 | 184 | 1 | 190 | 3.36e-117 | 337 |
| Msa0107440 | MtrunA17_Chr8g0369941 | 67.431 | 218 | 41 | 1 | 121 | 308 | 2 | 219 | 3.68e-105 | 306 |
| Msa0107440 | MtrunA17_Chr8g0369931 | 65.714 | 105 | 28 | 1 | 1 | 97 | 1 | 105 | 6.76e-36 | 125 |
| Msa0107440 | MtrunA17_Chr1g0163471 | 96.970 | 33 | 1 | 0 | 214 | 246 | 3 | 35 | 7.15e-16 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107440 | AT3G51520.1 | 54.125 | 303 | 137 | 2 | 7 | 308 | 13 | 314 | 2.43e-124 | 358 |
Find 58 sgRNAs with CRISPR-Local
Find 547 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTGCTCATAGTGTTTA+TGG | 0.105062 | 1_3:+17791715 | Msa0107440:CDS |
| AGACGATTCAACTGATATTT+TGG | 0.129345 | 1_3:+17797516 | Msa0107440:CDS |
| CTAACAAGAAATCTTATATT+TGG | 0.153683 | 1_3:-17792898 | None:intergenic |
| TGCGGATAAGAACAGTTATT+TGG | 0.169374 | 1_3:+17791745 | Msa0107440:CDS |
| TTCCATGTTAACCGATCTTA+TGG | 0.263645 | 1_3:+17791965 | Msa0107440:CDS |
| AGAAATCTTATATTTGGAAT+AGG | 0.293241 | 1_3:-17792892 | None:intergenic |
| GTAGCATTGGCTCTGTGTTT+TGG | 0.298676 | 1_3:+17791507 | Msa0107440:CDS |
| TCTCTATATTTCAGATTCAT+AGG | 0.304908 | 1_3:+17791887 | Msa0107440:intron |
| AATTCAGGTTGACAAAATTT+CGG | 0.317963 | 1_3:+17798893 | Msa0107440:CDS |
| GAAGAATTTAATTTCTTTGT+TGG | 0.319357 | 1_3:+17793065 | Msa0107440:CDS |
| GAAATCTTATATTTGGAATA+GGG | 0.329986 | 1_3:-17792891 | None:intergenic |
| TTCAAACAAATTTCAACTTA+AGG | 0.342964 | 1_3:-17799652 | None:intergenic |
| CACAGACAGAAACTTATAAA+TGG | 0.352297 | 1_3:+17797447 | Msa0107440:intron |
| TCGTCTAAGTGAAGCGTGAT+AGG | 0.357051 | 1_3:-17791932 | None:intergenic |
| CGTGGTGGGTAGACCAATTC+AGG | 0.358348 | 1_3:+17798878 | Msa0107440:CDS |
| ACCTGACCAAAGCAGAAAAC+TGG | 0.386400 | 1_3:-17794603 | None:intergenic |
| TATAAATGGTGGAAAGTTCC+TGG | 0.404021 | 1_3:+17797461 | Msa0107440:CDS |
| ATATATACCTGCTCTCTTGT+TGG | 0.411840 | 1_3:-17798918 | None:intergenic |
| GCGGATAAGAACAGTTATTT+GGG | 0.435225 | 1_3:+17791746 | Msa0107440:CDS |
| AATGGATTCTTGAATGGTAT+AGG | 0.447414 | 1_3:-17798849 | None:intergenic |
| TTAATTTCTTTGTTGGAGGC+TGG | 0.448600 | 1_3:+17793072 | Msa0107440:CDS |
| AGACAAGTATGGATATGGTT+GGG | 0.466952 | 1_3:+17793024 | Msa0107440:CDS |
| ACATACAATGGATTCTTGAA+TGG | 0.469129 | 1_3:-17798855 | None:intergenic |
| GAATTTAATTTCTTTGTTGG+AGG | 0.477891 | 1_3:+17793068 | Msa0107440:CDS |
| CTTCAAATCTGTTGTAGCAT+TGG | 0.485848 | 1_3:+17791494 | Msa0107440:CDS |
| GAGACAAGTATGGATATGGT+TGG | 0.504402 | 1_3:+17793023 | Msa0107440:CDS |
| AAAGCAGAAAACTGGAACAA+GGG | 0.523379 | 1_3:-17794595 | None:intergenic |
| TGTTCAAATAGCAATGGAGA+TGG | 0.535110 | 1_3:+17794566 | Msa0107440:CDS |
| GCTGCATATAAAGTGTTTCG+CGG | 0.541133 | 1_3:-17793125 | None:intergenic |
| AGGATTTGTTCAAATAGCAA+TGG | 0.541302 | 1_3:+17794560 | Msa0107440:CDS |
| ATATTCTCAATTAACTTACC+AGG | 0.541488 | 1_3:-17797479 | None:intergenic |
| GAACGACACAAGACTCAAGC+TGG | 0.542007 | 1_3:+17799620 | Msa0107440:CDS |
| AAGAAACTCACTGTGTACTC+TGG | 0.548735 | 1_3:-17799576 | None:intergenic |
| AGTGTTTCGCGGTTTCCACC+AGG | 0.554076 | 1_3:-17793114 | None:intergenic |
| AAATAACTGTTCTTATCCGC+AGG | 0.554982 | 1_3:-17791743 | None:intergenic |
| TTCGGAACCAACAAGAGAGC+AGG | 0.555635 | 1_3:+17798911 | Msa0107440:CDS |
| GTTCAAATAGCAATGGAGAT+GGG | 0.559401 | 1_3:+17794567 | Msa0107440:CDS |
| AACCATAAGATCGGTTAACA+TGG | 0.559670 | 1_3:-17791967 | None:intergenic |
| CTACCCACCACGACATACAA+TGG | 0.566505 | 1_3:-17798867 | None:intergenic |
| GTTAATACAAACCATAAGAT+CGG | 0.573060 | 1_3:-17791976 | None:intergenic |
| CAAAGCAGAAAACTGGAACA+AGG | 0.575333 | 1_3:-17794596 | None:intergenic |
| GTATTTCTTAAAGAAAGAAG+AGG | 0.577291 | 1_3:+17794540 | Msa0107440:CDS |
| CGTCTAAGTGAAGCGTGATA+GGG | 0.579159 | 1_3:-17791931 | None:intergenic |
| GAATCCATTGTATGTCGTGG+TGG | 0.579408 | 1_3:+17798863 | Msa0107440:CDS |
| AGACAGAAACTTATAAATGG+TGG | 0.587840 | 1_3:+17797450 | Msa0107440:intron |
| AAACACTTTATATGCAGCAT+GGG | 0.589263 | 1_3:+17793130 | Msa0107440:CDS |
| GAAACACTTTATATGCAGCA+TGG | 0.590323 | 1_3:+17793129 | Msa0107440:CDS |
| AGTGTTTATGGTGCTTCCTG+CGG | 0.592032 | 1_3:+17791727 | Msa0107440:CDS |
| AAGCAGAAAACTGGAACAAG+GGG | 0.599758 | 1_3:-17794594 | None:intergenic |
| ATGCTACAACAGATTTGAAG+CGG | 0.608325 | 1_3:-17791491 | None:intergenic |
| CAAGAATCCATTGTATGTCG+TGG | 0.609440 | 1_3:+17798860 | Msa0107440:CDS |
| AGAAGTGCAAATATGCCGAA+TGG | 0.610714 | 1_3:-17792853 | None:intergenic |
| AATCCATTGTATGTCGTGGT+GGG | 0.635307 | 1_3:+17798864 | Msa0107440:CDS |
| TTATATGCAGCATGGGTGCG+AGG | 0.657423 | 1_3:+17793137 | Msa0107440:CDS |
| AGTTGCATGTTAGTACCTGG+TGG | 0.667923 | 1_3:+17793099 | Msa0107440:CDS |
| AATAGTTGCATGTTAGTACC+TGG | 0.672196 | 1_3:+17793096 | Msa0107440:CDS |
| AGTTAATTGAGAATATTGCG+AGG | 0.730608 | 1_3:+17797486 | Msa0107440:CDS |
| AGCAGAAAACTGGAACAAGG+GGG | 0.745483 | 1_3:-17794593 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | - | chr1_3:17799385-17799404 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr1_3:17799386-17799405 | None:intergenic | 0.0% |
| !! | ATTTATATTTAACATATTTG+GGG | + | chr1_3:17792222-17792241 | Msa0107440:intron | 10.0% |
| !! | GTCAAAAAAATAAATAAATA+TGG | - | chr1_3:17792267-17792286 | None:intergenic | 10.0% |
| !! | TTAATATCTAAATACTATAT+AGG | + | chr1_3:17792316-17792335 | Msa0107440:intron | 10.0% |
| !!! | ACAATTAAATTTGAAATAAA+AGG | - | chr1_3:17792957-17792976 | None:intergenic | 10.0% |
| !! | TAAGATATTAACATTAAAAA+AGG | + | chr1_3:17795049-17795068 | Msa0107440:intron | 10.0% |
| !! | AAGATATTAACATTAAAAAA+GGG | + | chr1_3:17795050-17795069 | Msa0107440:intron | 10.0% |
| !! | TCATAAAATAAATAAATAGA+GGG | - | chr1_3:17798149-17798168 | None:intergenic | 10.0% |
| !! | TTCATAAAATAAATAAATAG+AGG | - | chr1_3:17798150-17798169 | None:intergenic | 10.0% |
| !!! | TACATTAAATAAATTTTTAG+TGG | + | chr1_3:17798502-17798521 | Msa0107440:intron | 10.0% |
| !!! | ACATTAAATAAATTTTTAGT+GGG | + | chr1_3:17798503-17798522 | Msa0107440:intron | 10.0% |
| !! | AAATAAATGTAAAAAAGGAA+AGG | - | chr1_3:17791629-17791648 | None:intergenic | 15.0% |
| !! | AAGGAAAATAAATGTAAAAA+AGG | - | chr1_3:17791634-17791653 | None:intergenic | 15.0% |
| !!! | GTTTTATTATCCAAATTAAT+TGG | - | chr1_3:17792046-17792065 | None:intergenic | 15.0% |
| !!! | GATTTTGAAAAGAAAAATAT+TGG | - | chr1_3:17792068-17792087 | None:intergenic | 15.0% |
| !! | ATATTAATGCATAAGAAATA+TGG | - | chr1_3:17792303-17792322 | None:intergenic | 15.0% |
| !! | AATAACTTAAAAAACTTAAG+TGG | + | chr1_3:17792565-17792584 | Msa0107440:intron | 15.0% |
| !!! | TGAGGTAATTTTTTTTTAAA+AGG | + | chr1_3:17792645-17792664 | Msa0107440:intron | 15.0% |
| !! | ACACTTTAATTATAATAAGT+TGG | - | chr1_3:17792672-17792691 | None:intergenic | 15.0% |
| !!! | AAGAGTATTTATATTTTTTG+TGG | - | chr1_3:17793224-17793243 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTTACAAATTC+CGG | + | chr1_3:17793602-17793621 | Msa0107440:intron | 15.0% |
| !!! | TTTTTTTTTTTACAAATTCC+GGG | + | chr1_3:17793603-17793622 | Msa0107440:intron | 15.0% |
| !! | ATAATAATAGTATCAATACA+AGG | - | chr1_3:17793721-17793740 | None:intergenic | 15.0% |
| !! | TATTAATTAAGTGTATGTTT+AGG | + | chr1_3:17793811-17793830 | Msa0107440:intron | 15.0% |
| !! | TAAAAAAGGATAATTAGAAT+AGG | - | chr1_3:17793960-17793979 | None:intergenic | 15.0% |
| !!! | ATTCTAATTATCCTTTTTTA+AGG | + | chr1_3:17793960-17793979 | Msa0107440:intron | 15.0% |
| !! | ATTGTACCAAAAAAAAAAAA+AGG | - | chr1_3:17794438-17794457 | None:intergenic | 15.0% |
| !! | AAAAATAAAGAGATTAGTAT+GGG | - | chr1_3:17794642-17794661 | None:intergenic | 15.0% |
| !! | TAATGTTAATATCTTATGTT+GGG | - | chr1_3:17795045-17795064 | None:intergenic | 15.0% |
| !! | TTAATGTTAATATCTTATGT+TGG | - | chr1_3:17795046-17795065 | None:intergenic | 15.0% |
| !! | ATGCAATAAAATAAGATAAA+GGG | + | chr1_3:17795590-17795609 | Msa0107440:intron | 15.0% |
| !! | AATAAATAAACTAAAGATTG+AGG | - | chr1_3:17795865-17795884 | None:intergenic | 15.0% |
| !!! | ACTTTTTGTACTATATATAT+AGG | - | chr1_3:17797300-17797319 | None:intergenic | 15.0% |
| !! | ATATATATAGTACAAAAAGT+TGG | + | chr1_3:17797300-17797319 | Msa0107440:intron | 15.0% |
| !! | TATCAAGAGATAAAATAAAT+AGG | + | chr1_3:17797714-17797733 | Msa0107440:intron | 15.0% |
| !!! | CATTAAATAAATTTTTAGTG+GGG | + | chr1_3:17798504-17798523 | Msa0107440:intron | 15.0% |
| !! | GTACAAAAAAAAAATTTAAG+AGG | - | chr1_3:17798757-17798776 | None:intergenic | 15.0% |
| !!! | ACCATATGTATTTTTTTTAA+TGG | + | chr1_3:17798775-17798794 | Msa0107440:intron | 15.0% |
| !! | ACCATTAAAAAAAATACATA+TGG | - | chr1_3:17798779-17798798 | None:intergenic | 15.0% |
| !!! | CTTTTTTGTTTCTTTATTTA+AGG | + | chr1_3:17799219-17799238 | Msa0107440:intron | 15.0% |
| !!! | TGTTTTAGTAAATTATAAGA+GGG | + | chr1_3:17799307-17799326 | Msa0107440:intron | 15.0% |
| !!! | AAAAAACCATGATTTTTTTT+TGG | + | chr1_3:17799673-17799692 | Msa0107440:exon | 15.0% |
| !! | TAGTGAAATAATAAAGCTAA+GGG | - | chr1_3:17791813-17791832 | None:intergenic | 20.0% |
| !! | ATAGTGAAATAATAAAGCTA+AGG | - | chr1_3:17791814-17791833 | None:intergenic | 20.0% |
| !! | TGTATTAACATAGAAAATAG+TGG | + | chr1_3:17791990-17792009 | Msa0107440:intron | 20.0% |
| !! | TTCAAAATCAAATAATGTAG+TGG | + | chr1_3:17792079-17792098 | Msa0107440:intron | 20.0% |
| !! | TAAGGGATCAAATATTATTT+GGG | + | chr1_3:17792189-17792208 | Msa0107440:intron | 20.0% |
| !!! | TTTTTTTTTTCGTATTACGT+AGG | + | chr1_3:17792453-17792472 | Msa0107440:intron | 20.0% |
| !! | TCATTTAAATGACATAAATG+AGG | + | chr1_3:17792627-17792646 | Msa0107440:intron | 20.0% |
| !!! | GAAATCTTATATTTGGAATA+GGG | - | chr1_3:17792894-17792913 | None:intergenic | 20.0% |
| !!! | AGAAATCTTATATTTGGAAT+AGG | - | chr1_3:17792895-17792914 | None:intergenic | 20.0% |
| !! | CTAACAAGAAATCTTATATT+TGG | - | chr1_3:17792901-17792920 | None:intergenic | 20.0% |
| !!! | GAAGAATTTAATTTCTTTGT+TGG | + | chr1_3:17793065-17793084 | Msa0107440:CDS | 20.0% |
| !! | GTAATATTAACACACAAAAT+AGG | - | chr1_3:17793434-17793453 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTACAAATTCCG+GGG | + | chr1_3:17793604-17793623 | Msa0107440:intron | 20.0% |
| !!! | CGTAAACCTTTTTTTTTTTT+TGG | + | chr1_3:17794429-17794448 | Msa0107440:intron | 20.0% |
| !! | TCTTATTAGTAGAAAAACAA+TGG | - | chr1_3:17794497-17794516 | None:intergenic | 20.0% |
| !! | CAAAAATAAAGAGATTAGTA+TGG | - | chr1_3:17794643-17794662 | None:intergenic | 20.0% |
| !! | ATCTTATATATAACAGATGT+TGG | - | chr1_3:17794821-17794840 | None:intergenic | 20.0% |
| !! | GAAATATATGTGTTAGTTAA+CGG | + | chr1_3:17795016-17795035 | Msa0107440:intron | 20.0% |
| !!! | AATTTTTTCCTTTAGGTTTA+AGG | + | chr1_3:17795155-17795174 | Msa0107440:intron | 20.0% |
| !! | CATGCAATAAAATAAGATAA+AGG | + | chr1_3:17795589-17795608 | Msa0107440:intron | 20.0% |
| !!! | AGCTAATTTGTTATAAACTT+TGG | - | chr1_3:17795719-17795738 | None:intergenic | 20.0% |
| !!! | TTAAATGATTTTACAACCAA+TGG | + | chr1_3:17795797-17795816 | Msa0107440:intron | 20.0% |
| !! | ATATACACATTTAAAAGGTA+AGG | - | chr1_3:17796598-17796617 | None:intergenic | 20.0% |
| !! | TTTCAAAGATTGATATTAGT+TGG | + | chr1_3:17797341-17797360 | Msa0107440:intron | 20.0% |
| !!! | TGCATTTATTTTCCTTTTTT+TGG | + | chr1_3:17797423-17797442 | Msa0107440:intron | 20.0% |
| !! | AATTCCAATTGTGAAAATTA+AGG | - | chr1_3:17798012-17798031 | None:intergenic | 20.0% |
| !! | AAAATTGTTGAGATAGTTAA+TGG | + | chr1_3:17798038-17798057 | Msa0107440:intron | 20.0% |
| !! | CAAATTTAGTACTATATAGT+GGG | - | chr1_3:17798118-17798137 | None:intergenic | 20.0% |
| !!! | TCAAACTTCATTTTTGTATA+TGG | - | chr1_3:17798661-17798680 | None:intergenic | 20.0% |
| !! | TATACAAAAATGAAGTTTGA+TGG | + | chr1_3:17798661-17798680 | Msa0107440:intron | 20.0% |
| !! | TATGTCAAATAAAAAATGAC+AGG | - | chr1_3:17798725-17798744 | None:intergenic | 20.0% |
| !!! | CATTTTTTATTTGACATATC+AGG | + | chr1_3:17798727-17798746 | Msa0107440:intron | 20.0% |
| !! | AAAAAAAAAATTTAAGAGGC+TGG | - | chr1_3:17798753-17798772 | None:intergenic | 20.0% |
| !!! | ACTTTTAAGGAAACAATATT+TGG | - | chr1_3:17799158-17799177 | None:intergenic | 20.0% |
| !!! | GTAATAAAGACAAACTTTTA+AGG | - | chr1_3:17799171-17799190 | None:intergenic | 20.0% |
| !!! | GTGTTTTAGTAAATTATAAG+AGG | + | chr1_3:17799306-17799325 | Msa0107440:intron | 20.0% |
| !! | TATATATATATATAACACCC+AGG | + | chr1_3:17799504-17799523 | Msa0107440:intron | 20.0% |
| !! | GAAGAAAATACAAGTTAATA+TGG | - | chr1_3:17799541-17799560 | None:intergenic | 20.0% |
| !!! | GTATTTTCTTCTTTACATTT+AGG | + | chr1_3:17799550-17799569 | Msa0107440:intron | 20.0% |
| !! | TTCAAACAAATTTCAACTTA+AGG | - | chr1_3:17799655-17799674 | None:intergenic | 20.0% |
| !! | TTTAGACCAAAAAAAAATCA+TGG | - | chr1_3:17799682-17799701 | None:intergenic | 20.0% |
| ! | TGTAAAAAAGGAAAGGAAAA+AGG | - | chr1_3:17791622-17791641 | None:intergenic | 25.0% |
| !! | AAAATATTTGAGACATGAGA+AGG | - | chr1_3:17791653-17791672 | None:intergenic | 25.0% |
| ! | ATCCAGGTAATTGATTAATT+TGG | + | chr1_3:17791778-17791797 | Msa0107440:intron | 25.0% |
| ! | TCCAGGTAATTGATTAATTT+GGG | + | chr1_3:17791779-17791798 | Msa0107440:intron | 25.0% |
| !! | GAATCTGAAATATAGAGAAA+AGG | - | chr1_3:17791885-17791904 | None:intergenic | 25.0% |
| ! | TCTCTATATTTCAGATTCAT+AGG | + | chr1_3:17791887-17791906 | Msa0107440:intron | 25.0% |
| ! | GTTAATACAAACCATAAGAT+CGG | - | chr1_3:17791979-17791998 | None:intergenic | 25.0% |
| !!! | ATAGAAAATAGTGGATACAA+TGG | + | chr1_3:17791999-17792018 | Msa0107440:intron | 25.0% |
| ! | GTAAGGGATCAAATATTATT+TGG | + | chr1_3:17792188-17792207 | Msa0107440:intron | 25.0% |
| ! | AAGGGATCAAATATTATTTG+GGG | + | chr1_3:17792190-17792209 | Msa0107440:intron | 25.0% |
| ! | TATAGGTTAAATTACACAAG+AGG | + | chr1_3:17792333-17792352 | Msa0107440:intron | 25.0% |
| ! | GATTTAACTATTGCAATTTG+AGG | + | chr1_3:17792488-17792507 | Msa0107440:intron | 25.0% |
| ! | TAAAACGAAGTCTTAACAAA+TGG | - | chr1_3:17792733-17792752 | None:intergenic | 25.0% |
| !!! | TGCTGTTATTTTTATATCAC+AGG | - | chr1_3:17792790-17792809 | None:intergenic | 25.0% |
| ! | ATAAAAGGAAAAGAGTTACA+AGG | - | chr1_3:17792942-17792961 | None:intergenic | 25.0% |
| !! | TTCTCATCTCATTTTATGAA+TGG | + | chr1_3:17792976-17792995 | Msa0107440:intron | 25.0% |
| !! | ATCTCATTTTATGAATGGAT+AGG | + | chr1_3:17792981-17793000 | Msa0107440:intron | 25.0% |
| !! | GAATTTAATTTCTTTGTTGG+AGG | + | chr1_3:17793068-17793087 | Msa0107440:CDS | 25.0% |
| !! | ACATGTCAATTTTCTTCATT+TGG | - | chr1_3:17793318-17793337 | None:intergenic | 25.0% |
| !! | TTTTGACAAAATCATCTTGA+CGG | - | chr1_3:17793510-17793529 | None:intergenic | 25.0% |
| ! | ATAATAGTATCAATACAAGG+TGG | - | chr1_3:17793718-17793737 | None:intergenic | 25.0% |
| ! | GCATAAATAAATTACTTCCT+CGG | - | chr1_3:17793925-17793944 | None:intergenic | 25.0% |
| ! | GATAGCAATAACCTTAAAAA+AGG | - | chr1_3:17793974-17793993 | None:intergenic | 25.0% |
| ! | AATTGTAAGACCATATTCAA+TGG | - | chr1_3:17794340-17794359 | None:intergenic | 25.0% |
| ! | GTATTTCTTAAAGAAAGAAG+AGG | + | chr1_3:17794540-17794559 | Msa0107440:CDS | 25.0% |
| !! | AAGATGAACCTTACTATTTT+TGG | + | chr1_3:17794718-17794737 | Msa0107440:intron | 25.0% |
| ! | ATAAATATATGCAAGGTTCA+GGG | - | chr1_3:17794762-17794781 | None:intergenic | 25.0% |
| ! | ACAATGCATAAATATATGCA+AGG | - | chr1_3:17794769-17794788 | None:intergenic | 25.0% |
| ! | ATCCTATATTCCCTTAAAAA+AGG | - | chr1_3:17794864-17794883 | None:intergenic | 25.0% |
| !! | TATATTTCTAAACAAGAGAC+AGG | - | chr1_3:17795004-17795023 | None:intergenic | 25.0% |
| !!! | TGAGCATAATTTTTTCCTTT+AGG | + | chr1_3:17795148-17795167 | Msa0107440:intron | 25.0% |
| !!! | ACCAACCCTTTTATTTAATT+CGG | + | chr1_3:17795355-17795374 | Msa0107440:intron | 25.0% |
| ! | GCAAACCGAATTAAATAAAA+GGG | - | chr1_3:17795363-17795382 | None:intergenic | 25.0% |
| ! | TCATTTATAGTATCAGTACT+TGG | + | chr1_3:17795434-17795453 | Msa0107440:intron | 25.0% |
| !!! | AGTAATAGGTTTTTTTGTCA+CGG | + | chr1_3:17795457-17795476 | Msa0107440:intron | 25.0% |
| ! | ACTCATAATAATTTGATGTG+TGG | + | chr1_3:17795557-17795576 | Msa0107440:intron | 25.0% |
| ! | CTCATAATAATTTGATGTGT+GGG | + | chr1_3:17795558-17795577 | Msa0107440:intron | 25.0% |
| ! | TCATAATAATTTGATGTGTG+GGG | + | chr1_3:17795559-17795578 | Msa0107440:intron | 25.0% |
| ! | AGGATAAAAGTTAGGAATTA+TGG | - | chr1_3:17795747-17795766 | None:intergenic | 25.0% |
| ! | AAACACTATTCAAATACCAT+TGG | - | chr1_3:17795816-17795835 | None:intergenic | 25.0% |
| !! | AACTAAAGATTGAGGATTTT+GGG | - | chr1_3:17795857-17795876 | None:intergenic | 25.0% |
| !! | AAACTAAAGATTGAGGATTT+TGG | - | chr1_3:17795858-17795877 | None:intergenic | 25.0% |
| ! | TTCAGTTTATGAGACAAAAA+AGG | - | chr1_3:17795924-17795943 | None:intergenic | 25.0% |
| ! | TATTCCTATCTGATGTTTAA+GGG | - | chr1_3:17795986-17796005 | None:intergenic | 25.0% |
| ! | TTATTCCTATCTGATGTTTA+AGG | - | chr1_3:17795987-17796006 | None:intergenic | 25.0% |
| ! | AGTAAACAAAAGACAACATA+TGG | + | chr1_3:17796109-17796128 | Msa0107440:intron | 25.0% |
| ! | GTAAACAAAAGACAACATAT+GGG | + | chr1_3:17796110-17796129 | Msa0107440:intron | 25.0% |
| ! | TAAACAAAAGACAACATATG+GGG | + | chr1_3:17796111-17796130 | Msa0107440:intron | 25.0% |
| !! | AGTTTTACCTTAAAGAACAA+GGG | - | chr1_3:17796395-17796414 | None:intergenic | 25.0% |
| !!! | TAGTTTTACCTTAAAGAACA+AGG | - | chr1_3:17796396-17796415 | None:intergenic | 25.0% |
| ! | AGTGGATATACACATTTAAA+AGG | - | chr1_3:17796603-17796622 | None:intergenic | 25.0% |
| ! | ATTGTTTATGAATGACATAG+TGG | - | chr1_3:17796621-17796640 | None:intergenic | 25.0% |
| ! | ATATTATACCATATGCAAGA+AGG | - | chr1_3:17796731-17796750 | None:intergenic | 25.0% |
| ! | ATAGAAGATTGTATTATTGC+GGG | - | chr1_3:17796897-17796916 | None:intergenic | 25.0% |
| ! | CATAGAAGATTGTATTATTG+CGG | - | chr1_3:17796898-17796917 | None:intergenic | 25.0% |
| ! | ATAATACAATCTTCTATGGA+AGG | + | chr1_3:17796900-17796919 | Msa0107440:intron | 25.0% |
| ! | TTTAAAGAGGACAATTGATA+GGG | - | chr1_3:17797388-17797407 | None:intergenic | 25.0% |
| ! | ATTTAAAGAGGACAATTGAT+AGG | - | chr1_3:17797389-17797408 | None:intergenic | 25.0% |
| ! | ATATTCTCAATTAACTTACC+AGG | - | chr1_3:17797482-17797501 | None:intergenic | 25.0% |
| !! | TGCTATCATTTTCTTTCAAA+AGG | - | chr1_3:17797655-17797674 | None:intergenic | 25.0% |
| ! | ATATATTTCCTTGTTCAGAT+TGG | - | chr1_3:17797697-17797716 | None:intergenic | 25.0% |
| !! | CAACAATTGTTACTCTATTT+TGG | - | chr1_3:17797846-17797865 | None:intergenic | 25.0% |
| ! | CAAAATAGAGTAACAATTGT+TGG | + | chr1_3:17797844-17797863 | Msa0107440:intron | 25.0% |
| ! | AATTTGAATCTAACATTGAC+CGG | - | chr1_3:17797907-17797926 | None:intergenic | 25.0% |
| ! | CCAAATTTAGTACTATATAG+TGG | - | chr1_3:17798119-17798138 | None:intergenic | 25.0% |
| ! | CCACTATATAGTACTAAATT+TGG | + | chr1_3:17798116-17798135 | Msa0107440:intron | 25.0% |
| ! | CTATATAGTACTAAATTTGG+AGG | + | chr1_3:17798119-17798138 | Msa0107440:intron | 25.0% |
| ! | TATGAATGTCAAATGTTAGT+AGG | + | chr1_3:17798164-17798183 | Msa0107440:intron | 25.0% |
| !!! | TAGTAGGTTACTTGTTATTA+AGG | + | chr1_3:17798180-17798199 | Msa0107440:intron | 25.0% |
| !!! | AGTAGGTTACTTGTTATTAA+GGG | + | chr1_3:17798181-17798200 | Msa0107440:intron | 25.0% |
| ! | TTTATTAGAGGACATATCTT+GGG | - | chr1_3:17798271-17798290 | None:intergenic | 25.0% |
| ! | AAGATACTACTCTTTATTAG+AGG | - | chr1_3:17798283-17798302 | None:intergenic | 25.0% |
| ! | TTATTTAGAGGACATACATT+GGG | - | chr1_3:17798350-17798369 | None:intergenic | 25.0% |
| ! | ATTATTTAGAGGACATACAT+TGG | - | chr1_3:17798351-17798370 | None:intergenic | 25.0% |
| !! | TTTTGTGCTCAATTATTTAG+AGG | - | chr1_3:17798362-17798381 | None:intergenic | 25.0% |
| !! | CTATATGTTTTCTATACCTT+AGG | + | chr1_3:17798573-17798592 | Msa0107440:intron | 25.0% |
| !! | TCAAGTGAAATTGTTCATTT+TGG | - | chr1_3:17798621-17798640 | None:intergenic | 25.0% |
| ! | ATATCATGAGGATTGATATA+TGG | - | chr1_3:17798808-17798827 | None:intergenic | 25.0% |
| !!! | AATTCAGGTTGACAAAATTT+CGG | + | chr1_3:17798893-17798912 | Msa0107440:CDS | 25.0% |
| ! | TAGACTCATATATACATAGA+GGG | + | chr1_3:17799014-17799033 | Msa0107440:intron | 25.0% |
| !! | ACACCCATCTAAAATTATTA+AGG | + | chr1_3:17799088-17799107 | Msa0107440:intron | 25.0% |
| !! | GCACCTTAATAATTTTAGAT+GGG | - | chr1_3:17799094-17799113 | None:intergenic | 25.0% |
| !! | TGCACCTTAATAATTTTAGA+TGG | - | chr1_3:17799095-17799114 | None:intergenic | 25.0% |
| !! | ATATTTGGAATGGTGAAAAT+GGG | - | chr1_3:17799143-17799162 | None:intergenic | 25.0% |
| !! | AATATTTGGAATGGTGAAAA+TGG | - | chr1_3:17799144-17799163 | None:intergenic | 25.0% |
| ! | TAAGGAAACAATATTTGGAA+TGG | - | chr1_3:17799153-17799172 | None:intergenic | 25.0% |
| ! | GAAAATACAAGTTAATATGG+AGG | - | chr1_3:17799538-17799557 | None:intergenic | 25.0% |
| !! | AAATAATGTAGTGGATACAG+TGG | + | chr1_3:17792088-17792107 | Msa0107440:intron | 30.0% |
| AAAGGTCTAGAAGAAAAGTA+AGG | + | chr1_3:17792171-17792190 | Msa0107440:intron | 30.0% | |
| AAGGTCTAGAAGAAAAGTAA+GGG | + | chr1_3:17792172-17792191 | Msa0107440:intron | 30.0% | |
| !! | ATTACACAAGAGGTCATTTT+CGG | + | chr1_3:17792343-17792362 | Msa0107440:intron | 30.0% |
| AAGTCTTAACAAATGGATGA+AGG | - | chr1_3:17792726-17792745 | None:intergenic | 30.0% | |
| !!! | TACCATTTTTGAGACAAGTA+TGG | + | chr1_3:17793013-17793032 | Msa0107440:CDS | 30.0% |
| ATCCATACTTGTCTCAAAAA+TGG | - | chr1_3:17793018-17793037 | None:intergenic | 30.0% | |
| !!! | TTTTGAGACAAGTATGGATA+TGG | + | chr1_3:17793019-17793038 | Msa0107440:CDS | 30.0% |
| AAACACTTTATATGCAGCAT+GGG | + | chr1_3:17793130-17793149 | Msa0107440:CDS | 30.0% | |
| !!! | TTATATTTTTTGTGGACCAC+AGG | - | chr1_3:17793216-17793235 | None:intergenic | 30.0% |
| AGAAATGTGACAAATGCAAA+TGG | - | chr1_3:17793382-17793401 | None:intergenic | 30.0% | |
| AAGATGATATTTCCGAGTTT+GGG | + | chr1_3:17793545-17793564 | Msa0107440:intron | 30.0% | |
| TATCAATACAAGGTGGAATA+CGG | - | chr1_3:17793711-17793730 | None:intergenic | 30.0% | |
| TTATTGCTATCGAATGTCTT+TGG | + | chr1_3:17793983-17794002 | Msa0107440:intron | 30.0% | |
| TATTGCTATCGAATGTCTTT+GGG | + | chr1_3:17793984-17794003 | Msa0107440:intron | 30.0% | |
| ! | TTTAAAGCGACCATTGAATA+TGG | + | chr1_3:17794327-17794346 | Msa0107440:intron | 30.0% |
| ! | AGGATTTGTTCAAATAGCAA+TGG | + | chr1_3:17794560-17794579 | Msa0107440:CDS | 30.0% |
| !!! | ATGAACCTTACTATTTTTGG+TGG | + | chr1_3:17794721-17794740 | Msa0107440:intron | 30.0% |
| CATAAATATATGCAAGGTTC+AGG | - | chr1_3:17794763-17794782 | None:intergenic | 30.0% | |
| !!! | AATCAACCAGCCTTTTTTAA+GGG | + | chr1_3:17794851-17794870 | Msa0107440:intron | 30.0% |
| TATATTCCCTTAAAAAAGGC+TGG | - | chr1_3:17794860-17794879 | None:intergenic | 30.0% | |
| !!! | AGCCTTTTTTAAGGGAATAT+AGG | + | chr1_3:17794859-17794878 | Msa0107440:intron | 30.0% |
| GTTTCCTAGATTAAATGATG+TGG | + | chr1_3:17794940-17794959 | Msa0107440:intron | 30.0% | |
| ! | AAGCATTTGTTGAGAATCTA+TGG | + | chr1_3:17795241-17795260 | Msa0107440:intron | 30.0% |
| !! | ATGGTGTTTTAGACCTATTT+TGG | + | chr1_3:17795281-17795300 | Msa0107440:intron | 30.0% |
| !! | TGGTGTTTTAGACCTATTTT+GGG | + | chr1_3:17795282-17795301 | Msa0107440:intron | 30.0% |
| ACCGAATTAAATAAAAGGGT+TGG | - | chr1_3:17795359-17795378 | None:intergenic | 30.0% | |
| GGCAAACCGAATTAAATAAA+AGG | - | chr1_3:17795364-17795383 | None:intergenic | 30.0% | |
| CTATAAATGACGTGAATTAG+AGG | - | chr1_3:17795424-17795443 | None:intergenic | 30.0% | |
| !!! | TGTTGTTTTTTTGCCCAATT+TGG | + | chr1_3:17795631-17795650 | Msa0107440:intron | 30.0% |
| ! | CGTAAATCTTTTGCCAAATT+GGG | - | chr1_3:17795647-17795666 | None:intergenic | 30.0% |
| ! | ACGTAAATCTTTTGCCAAAT+TGG | - | chr1_3:17795648-17795667 | None:intergenic | 30.0% |
| AAAGATTTACGTACATGTGT+TGG | + | chr1_3:17795656-17795675 | Msa0107440:intron | 30.0% | |
| ! | TCTTTTTGTAAGCAGTGAAT+TGG | - | chr1_3:17795694-17795713 | None:intergenic | 30.0% |
| ! | TCCTAACTTTTATCCTTTGT+TGG | + | chr1_3:17795751-17795770 | Msa0107440:intron | 30.0% |
| ! | CCTAACTTTTATCCTTTGTT+GGG | + | chr1_3:17795752-17795771 | Msa0107440:intron | 30.0% |
| ! | TAAGTAGAAAGCACATGTTT+GGG | - | chr1_3:17795949-17795968 | None:intergenic | 30.0% |
| ! | ATAAGTAGAAAGCACATGTT+TGG | - | chr1_3:17795950-17795969 | None:intergenic | 30.0% |
| AACATGTGCTTTCTACTTAT+AGG | + | chr1_3:17795950-17795969 | Msa0107440:intron | 30.0% | |
| ACTTCATAGTTGTACCATTA+TGG | + | chr1_3:17796507-17796526 | Msa0107440:intron | 30.0% | |
| GAATAAAACTCAGCTTAATG+AGG | - | chr1_3:17796574-17796593 | None:intergenic | 30.0% | |
| CAAGTAAAGAACAAATGAGA+AGG | - | chr1_3:17796699-17796718 | None:intergenic | 30.0% | |
| TCTCATTTGTTCTTTACTTG+TGG | + | chr1_3:17796699-17796718 | Msa0107440:intron | 30.0% | |
| CTCATTTGTTCTTTACTTGT+GGG | + | chr1_3:17796700-17796719 | Msa0107440:intron | 30.0% | |
| GCATATGGTATAATATTGTC+AGG | + | chr1_3:17796735-17796754 | Msa0107440:intron | 30.0% | |
| TATGGTATAATATTGTCAGG+TGG | + | chr1_3:17796738-17796757 | Msa0107440:intron | 30.0% | |
| TATAATATTGTCAGGTGGTT+AGG | + | chr1_3:17796743-17796762 | Msa0107440:intron | 30.0% | |
| ATAATATTGTCAGGTGGTTA+GGG | + | chr1_3:17796744-17796763 | Msa0107440:intron | 30.0% | |
| AATTTGACACGTTCTTATGT+GGG | + | chr1_3:17796858-17796877 | Msa0107440:intron | 30.0% | |
| TAGAAGATTGTATTATTGCG+GGG | - | chr1_3:17796896-17796915 | None:intergenic | 30.0% | |
| CGCAATAATACAATCTTCTA+TGG | + | chr1_3:17796896-17796915 | Msa0107440:intron | 30.0% | |
| CTAAATTCTCTACTTGAAAG+TGG | + | chr1_3:17796952-17796971 | Msa0107440:intron | 30.0% | |
| TGGTTTCTTTGTAAGAATCT+TGG | + | chr1_3:17796972-17796991 | Msa0107440:intron | 30.0% | |
| TTGTGATCGATCAAATAAAG+TGG | + | chr1_3:17797024-17797043 | Msa0107440:intron | 30.0% | |
| !!! | GAGCGATGAATATTTTTAGT+TGG | + | chr1_3:17797145-17797164 | Msa0107440:intron | 30.0% |
| ! | GATTTCACCCTTCTTATTTA+TGG | + | chr1_3:17797205-17797224 | Msa0107440:intron | 30.0% |
| CATACCACCATAAATAAGAA+GGG | - | chr1_3:17797215-17797234 | None:intergenic | 30.0% | |
| ACATACCACCATAAATAAGA+AGG | - | chr1_3:17797216-17797235 | None:intergenic | 30.0% | |
| TTAAAGAGGACAATTGATAG+GGG | - | chr1_3:17797387-17797406 | None:intergenic | 30.0% | |
| TCAGCAACATCTATTTAAAG+AGG | - | chr1_3:17797401-17797420 | None:intergenic | 30.0% | |
| CACAGACAGAAACTTATAAA+TGG | + | chr1_3:17797447-17797466 | Msa0107440:intron | 30.0% | |
| AGACAGAAACTTATAAATGG+TGG | + | chr1_3:17797450-17797469 | Msa0107440:intron | 30.0% | |
| AGTTAATTGAGAATATTGCG+AGG | + | chr1_3:17797486-17797505 | Msa0107440:CDS | 30.0% | |
| ! | AGACGATTCAACTGATATTT+TGG | + | chr1_3:17797516-17797535 | Msa0107440:CDS | 30.0% |
| ! | GACGATTCAACTGATATTTT+GGG | + | chr1_3:17797517-17797536 | Msa0107440:CDS | 30.0% |
| ! | ACGATTCAACTGATATTTTG+GGG | + | chr1_3:17797518-17797537 | Msa0107440:CDS | 30.0% |
| ! | GAAGCAATTTGACTTAGAAA+AGG | - | chr1_3:17797562-17797581 | None:intergenic | 30.0% |
| ! | CTCTTTTAGATATGTTCATG+TGG | - | chr1_3:17797935-17797954 | None:intergenic | 30.0% |
| ! | GGAACCTTAATTTTCACAAT+TGG | + | chr1_3:17798005-17798024 | Msa0107440:intron | 30.0% |
| !! | AGATAGTTAATGGATTGAGA+GGG | + | chr1_3:17798048-17798067 | Msa0107440:intron | 30.0% |
| GAAAAAGTTAAGAGGGATAA+AGG | - | chr1_3:17798215-17798234 | None:intergenic | 30.0% | |
| AGGGATTGAAAAAGTTAAGA+GGG | - | chr1_3:17798222-17798241 | None:intergenic | 30.0% | |
| AAGGGATTGAAAAAGTTAAG+AGG | - | chr1_3:17798223-17798242 | None:intergenic | 30.0% | |
| TTGGGAATAGATAACTCATT+TGG | - | chr1_3:17798253-17798272 | None:intergenic | 30.0% | |
| CTTTATTAGAGGACATATCT+TGG | - | chr1_3:17798272-17798291 | None:intergenic | 30.0% | |
| ! | ATTTTGCTACTCATTTCTCA+AGG | - | chr1_3:17798426-17798445 | None:intergenic | 30.0% |
| AAAGGAAACTTCACCAAAAA+TGG | + | chr1_3:17798538-17798557 | Msa0107440:intron | 30.0% | |
| !!! | GTTTGTTTTGCTTCCATTTT+TGG | - | chr1_3:17798554-17798573 | None:intergenic | 30.0% |
| ! | AATGGATTCTTGAATGGTAT+AGG | - | chr1_3:17798852-17798871 | None:intergenic | 30.0% |
| ! | ACATACAATGGATTCTTGAA+TGG | - | chr1_3:17798858-17798877 | None:intergenic | 30.0% |
| ! | GAAATTTTGTCAACCTGAAT+TGG | - | chr1_3:17798894-17798913 | None:intergenic | 30.0% |
| ! | CATTTCTAAGAAACAACGTT+TGG | - | chr1_3:17798989-17799008 | None:intergenic | 30.0% |
| GTAGACTCATATATACATAG+AGG | + | chr1_3:17799013-17799032 | Msa0107440:intron | 30.0% | |
| AGACTCATATATACATAGAG+GGG | + | chr1_3:17799015-17799034 | Msa0107440:intron | 30.0% | |
| ! | ACTTGCACCTTAGTATTTTT+AGG | - | chr1_3:17799059-17799078 | None:intergenic | 30.0% |
| AAATGGGTGTAAATTAGTGA+AGG | - | chr1_3:17799127-17799146 | None:intergenic | 30.0% | |
| AAAAGACAATGACATGCTTA+AGG | - | chr1_3:17799204-17799223 | None:intergenic | 30.0% | |
| TACAAGTTAATATGGAGGTT+GGG | - | chr1_3:17799533-17799552 | None:intergenic | 30.0% | |
| ATACAAGTTAATATGGAGGT+TGG | - | chr1_3:17799534-17799553 | None:intergenic | 30.0% | |
| ATGCTACAACAGATTTGAAG+CGG | - | chr1_3:17791494-17791513 | None:intergenic | 35.0% | |
| CTTCAAATCTGTTGTAGCAT+TGG | + | chr1_3:17791494-17791513 | Msa0107440:CDS | 35.0% | |
| TGCTTTGCTCATAGTGTTTA+TGG | + | chr1_3:17791715-17791734 | Msa0107440:CDS | 35.0% | |
| AAATAACTGTTCTTATCCGC+AGG | - | chr1_3:17791746-17791765 | None:intergenic | 35.0% | |
| TGCGGATAAGAACAGTTATT+TGG | + | chr1_3:17791745-17791764 | Msa0107440:CDS | 35.0% | |
| GCGGATAAGAACAGTTATTT+GGG | + | chr1_3:17791746-17791765 | Msa0107440:CDS | 35.0% | |
| ATTTGGGTCGAAAAATATCC+AGG | + | chr1_3:17791762-17791781 | Msa0107440:CDS | 35.0% | |
| GCCCAAATTAATCAATTACC+TGG | - | chr1_3:17791783-17791802 | None:intergenic | 35.0% | |
| TTCCATGTTAACCGATCTTA+TGG | + | chr1_3:17791965-17791984 | Msa0107440:CDS | 35.0% | |
| AACCATAAGATCGGTTAACA+TGG | - | chr1_3:17791970-17791989 | None:intergenic | 35.0% | |
| GCAAGTTGCACCAATTAATT+TGG | + | chr1_3:17792033-17792052 | Msa0107440:intron | 35.0% | |
| TTCTCATCGAAGATTGTTTC+TGG | + | chr1_3:17792134-17792153 | Msa0107440:intron | 35.0% | |
| CATAGGCAAAAACTGCATAA+AGG | - | chr1_3:17792816-17792835 | None:intergenic | 35.0% | |
| AGACAAGTATGGATATGGTT+GGG | + | chr1_3:17793024-17793043 | Msa0107440:CDS | 35.0% | |
| TTAATTTCTTTGTTGGAGGC+TGG | + | chr1_3:17793072-17793091 | Msa0107440:CDS | 35.0% | |
| AATAGTTGCATGTTAGTACC+TGG | + | chr1_3:17793096-17793115 | Msa0107440:CDS | 35.0% | |
| GAAACACTTTATATGCAGCA+TGG | + | chr1_3:17793129-17793148 | Msa0107440:CDS | 35.0% | |
| ACAAAATCAAGCACTTGTGA+AGG | - | chr1_3:17793188-17793207 | None:intergenic | 35.0% | |
| CAAAATCATCTTGACGGAAA+TGG | - | chr1_3:17793504-17793523 | None:intergenic | 35.0% | |
| ACTCGGAAATATCATCTTGA+CGG | - | chr1_3:17793543-17793562 | None:intergenic | 35.0% | |
| CAAGATGATATTTCCGAGTT+TGG | + | chr1_3:17793544-17793563 | Msa0107440:intron | 35.0% | |
| !! | AGAGCTCTTGACACTTTTTA+AGG | - | chr1_3:17794116-17794135 | None:intergenic | 35.0% |
| TTGATGTGTATTTGCGTATG+TGG | + | chr1_3:17794279-17794298 | Msa0107440:intron | 35.0% | |
| TGTTCAAATAGCAATGGAGA+TGG | + | chr1_3:17794566-17794585 | Msa0107440:CDS | 35.0% | |
| GTTCAAATAGCAATGGAGAT+GGG | + | chr1_3:17794567-17794586 | Msa0107440:CDS | 35.0% | |
| AAAGCAGAAAACTGGAACAA+GGG | - | chr1_3:17794598-17794617 | None:intergenic | 35.0% | |
| !!! | TTACTATTTTTGGTGGTGTC+CGG | + | chr1_3:17794728-17794747 | Msa0107440:intron | 35.0% |
| ! | CTTAAAAAAGGCTGGTTGAT+TGG | - | chr1_3:17794852-17794871 | None:intergenic | 35.0% |
| !!! | CAATCAACCAGCCTTTTTTA+AGG | + | chr1_3:17794850-17794869 | Msa0107440:intron | 35.0% |
| AGACAACATCATCTTCAAAG+TGG | + | chr1_3:17794884-17794903 | Msa0107440:intron | 35.0% | |
| GACTCCACATCATTTAATCT+AGG | - | chr1_3:17794947-17794966 | None:intergenic | 35.0% | |
| ! | TTTCCTTTAGGTTTAAGGCA+AGG | + | chr1_3:17795160-17795179 | Msa0107440:intron | 35.0% |
| ATCATCTGCATAATGACGAT+GGG | - | chr1_3:17795205-17795224 | None:intergenic | 35.0% | |
| TATCATCTGCATAATGACGA+TGG | - | chr1_3:17795206-17795225 | None:intergenic | 35.0% | |
| TGAGAATCTATGGACTCTTA+AGG | + | chr1_3:17795251-17795270 | Msa0107440:intron | 35.0% | |
| ! | AGGTCTAAAACACCATATGA+TGG | - | chr1_3:17795277-17795296 | None:intergenic | 35.0% |
| ! | CTAACTTGTAGTCCCAAAAT+AGG | - | chr1_3:17795297-17795316 | None:intergenic | 35.0% |
| ATCATATGTGTCAATGTGAG+AGG | + | chr1_3:17795332-17795351 | Msa0107440:intron | 35.0% | |
| ! | TTTAATTCGGTTTGCCTTTG+AGG | + | chr1_3:17795368-17795387 | Msa0107440:intron | 35.0% |
| ! | TTAATTCGGTTTGCCTTTGA+GGG | + | chr1_3:17795369-17795388 | Msa0107440:intron | 35.0% |
| GTATCAGTACTTGGAGTAAT+AGG | + | chr1_3:17795443-17795462 | Msa0107440:intron | 35.0% | |
| TCGTGTTATGCCCTTTAATT+CGG | + | chr1_3:17795483-17795502 | Msa0107440:intron | 35.0% | |
| ATTCACAACTGAAAGGTAGA+AGG | - | chr1_3:17795527-17795546 | None:intergenic | 35.0% | |
| CTACCTTTCAGTTGTGAATT+CGG | + | chr1_3:17795528-17795547 | Msa0107440:intron | 35.0% | |
| CCCAACAAAGGATAAAAGTT+AGG | - | chr1_3:17795755-17795774 | None:intergenic | 35.0% | |
| ATGTAAAGAGATCCCAACAA+AGG | - | chr1_3:17795767-17795786 | None:intergenic | 35.0% | |
| TTTGTTGGGATCTCTTTACA+TGG | + | chr1_3:17795766-17795785 | Msa0107440:intron | 35.0% | |
| TTGGGAGAGATTATAGGATT+TGG | - | chr1_3:17795839-17795858 | None:intergenic | 35.0% | |
| !! | AGGATTTTGGGAGAGATTAT+AGG | - | chr1_3:17795845-17795864 | None:intergenic | 35.0% |
| ! | TCCTTAAAAGTTCCCTCTTT+TGG | + | chr1_3:17795884-17795903 | Msa0107440:intron | 35.0% |
| ! | ACCAAAAGAGGGAACTTTTA+AGG | - | chr1_3:17795888-17795907 | None:intergenic | 35.0% |
| AACCTATAGAGACCAAAAGA+GGG | - | chr1_3:17795899-17795918 | None:intergenic | 35.0% | |
| AAACCTATAGAGACCAAAAG+AGG | - | chr1_3:17795900-17795919 | None:intergenic | 35.0% | |
| ! | AAGTAGAAAGCACATGTTTG+GGG | - | chr1_3:17795948-17795967 | None:intergenic | 35.0% |
| TTAGCCCTTAAACATCAGAT+AGG | + | chr1_3:17795979-17795998 | Msa0107440:intron | 35.0% | |
| TACCATACCTTTAGATCGAT+GGG | + | chr1_3:17796161-17796180 | Msa0107440:intron | 35.0% | |
| AAGTAAAGGTTCAATCTCGT+CGG | - | chr1_3:17796219-17796238 | None:intergenic | 35.0% | |
| AACCTTTACTTCTTCAACCA+TGG | + | chr1_3:17796228-17796247 | Msa0107440:intron | 35.0% | |
| ACCTTTACTTCTTCAACCAT+GGG | + | chr1_3:17796229-17796248 | Msa0107440:intron | 35.0% | |
| CTCAAAATCCTAGCGTAATT+GGG | - | chr1_3:17796287-17796306 | None:intergenic | 35.0% | |
| !! | GAAGCAAGGATATTTTCAAG+AGG | - | chr1_3:17796366-17796385 | None:intergenic | 35.0% |
| CCTTAAAGAACAAGGGTAAT+TGG | - | chr1_3:17796388-17796407 | None:intergenic | 35.0% | |
| CCAATTACCCTTGTTCTTTA+AGG | + | chr1_3:17796385-17796404 | Msa0107440:intron | 35.0% | |
| ATGGGGTAAAAAAGATGGTA+TGG | - | chr1_3:17796423-17796442 | None:intergenic | 35.0% | |
| ACTCTATGGGGTAAAAAAGA+TGG | - | chr1_3:17796428-17796447 | None:intergenic | 35.0% | |
| ! | TTACTAGAGCATCACATACA+AGG | + | chr1_3:17796484-17796503 | Msa0107440:intron | 35.0% |
| GAAAAATGGATGCACCATAA+TGG | - | chr1_3:17796524-17796543 | None:intergenic | 35.0% | |
| ! | ATTTTCCCAATAGTAGGACT+AGG | - | chr1_3:17796551-17796570 | None:intergenic | 35.0% |
| ! | ATGAGGATTTTCCCAATAGT+AGG | - | chr1_3:17796557-17796576 | None:intergenic | 35.0% |
| GTAAAGAACAAATGAGAAGG+CGG | - | chr1_3:17796696-17796715 | None:intergenic | 35.0% | |
| TTTGTTCTTTACTTGTGGGA+TGG | + | chr1_3:17796704-17796723 | Msa0107440:intron | 35.0% | |
| !! | TTAGCTTTTCCAGAGTCTTA+TGG | + | chr1_3:17796804-17796823 | Msa0107440:intron | 35.0% |
| GAATTTGACACGTTCTTATG+TGG | + | chr1_3:17796857-17796876 | Msa0107440:intron | 35.0% | |
| TTCTATGGAAGGAAAACCAT+TGG | + | chr1_3:17796911-17796930 | Msa0107440:intron | 35.0% | |
| TCTATGGAAGGAAAACCATT+GGG | + | chr1_3:17796912-17796931 | Msa0107440:intron | 35.0% | |
| TTGGTCATACCCTTTATTCA+GGG | + | chr1_3:17796991-17797010 | Msa0107440:intron | 35.0% | |
| TGATCGATCAAATAAAGTGG+TGG | + | chr1_3:17797027-17797046 | Msa0107440:intron | 35.0% | |
| ! | TTTAGTTGGCTTAGTGATGA+TGG | + | chr1_3:17797159-17797178 | Msa0107440:intron | 35.0% |
| ! | TTAGTTGGCTTAGTGATGAT+GGG | + | chr1_3:17797160-17797179 | Msa0107440:intron | 35.0% |
| ! | TTCACCCTTCTTATTTATGG+TGG | + | chr1_3:17797208-17797227 | Msa0107440:intron | 35.0% |
| !! | TGGTGGTATGTTTCTGTTTT+TGG | + | chr1_3:17797225-17797244 | Msa0107440:intron | 35.0% |
| TTCTGTCTGTGACCAAAAAA+AGG | - | chr1_3:17797438-17797457 | None:intergenic | 35.0% | |
| ! | TATAAATGGTGGAAAGTTCC+TGG | + | chr1_3:17797461-17797480 | Msa0107440:CDS | 35.0% |
| TCTCCGTTAGATTTCATGAA+TGG | + | chr1_3:17797818-17797837 | Msa0107440:intron | 35.0% | |
| CTCCGTTAGATTTCATGAAT+GGG | + | chr1_3:17797819-17797838 | Msa0107440:intron | 35.0% | |
| GACCCATTCATGAAATCTAA+CGG | - | chr1_3:17797824-17797843 | None:intergenic | 35.0% | |
| !! | GAGATAGTTAATGGATTGAG+AGG | + | chr1_3:17798047-17798066 | Msa0107440:intron | 35.0% |
| AGAATGTTAGCATTCGAGAT+TGG | - | chr1_3:17798095-17798114 | None:intergenic | 35.0% | |
| AACTCATTTGGTTGAGCTAA+GGG | - | chr1_3:17798241-17798260 | None:intergenic | 35.0% | |
| TAACTCATTTGGTTGAGCTA+AGG | - | chr1_3:17798242-17798261 | None:intergenic | 35.0% | |
| !! | TACTCCACTCATCACTTTTA+TGG | - | chr1_3:17798475-17798494 | None:intergenic | 35.0% |
| AAGTGATGAGTGGAGTAAAT+AGG | + | chr1_3:17798478-17798497 | Msa0107440:intron | 35.0% | |
| TGGTATAGGAGATCTATAAG+AGG | - | chr1_3:17798838-17798857 | None:intergenic | 35.0% | |
| ATATATACCTGCTCTCTTGT+TGG | - | chr1_3:17798921-17798940 | None:intergenic | 35.0% | |
| ! | TGCTCAACTATTTTCACCAT+CGG | + | chr1_3:17798949-17798968 | Msa0107440:intron | 35.0% |
| GACTCATATATACATAGAGG+GGG | + | chr1_3:17799016-17799035 | Msa0107440:intron | 35.0% | |
| ACACCCACCTAAAAATACTA+AGG | + | chr1_3:17799049-17799068 | Msa0107440:intron | 35.0% | |
| !!! | GCACCTTAGTATTTTTAGGT+GGG | - | chr1_3:17799055-17799074 | None:intergenic | 35.0% |
| !!! | TGCACCTTAGTATTTTTAGG+TGG | - | chr1_3:17799056-17799075 | None:intergenic | 35.0% |
| !!! | ACTTGCACCTTAGTGTTTTT+TGG | + | chr1_3:17799342-17799361 | Msa0107440:intron | 35.0% |
| ACATCCACCAAAAAACACTA+AGG | - | chr1_3:17799352-17799371 | None:intergenic | 35.0% | |
| !! | TCATCGAAGATTGTTTCTGG+TGG | + | chr1_3:17792137-17792156 | Msa0107440:intron | 40.0% |
| AAAAACTGAGTGTGGCTCAT+AGG | - | chr1_3:17792833-17792852 | None:intergenic | 40.0% | |
| ! | CCACACTCAGTTTTTCCATT+CGG | + | chr1_3:17792838-17792857 | Msa0107440:CDS | 40.0% |
| ! | AGAAGTGCAAATATGCCGAA+TGG | - | chr1_3:17792856-17792875 | None:intergenic | 40.0% |
| GAGACAAGTATGGATATGGT+TGG | + | chr1_3:17793023-17793042 | Msa0107440:CDS | 40.0% | |
| ! | ATGGTTGGGTTTTACATCAG+TGG | + | chr1_3:17793038-17793057 | Msa0107440:CDS | 40.0% |
| ! | GCTGCATATAAAGTGTTTCG+CGG | - | chr1_3:17793128-17793147 | None:intergenic | 40.0% |
| ! | CTTGATTTTGTGTAGACCTG+TGG | + | chr1_3:17793197-17793216 | Msa0107440:intron | 40.0% |
| GCAAATGGTGCTTACATACA+GGG | - | chr1_3:17793367-17793386 | None:intergenic | 40.0% | |
| TGCAAATGGTGCTTACATAC+AGG | - | chr1_3:17793368-17793387 | None:intergenic | 40.0% | |
| ATCATCTTGACGGAAATGGA+AGG | - | chr1_3:17793500-17793519 | None:intergenic | 40.0% | |
| GTGCTTAGATATAGAAACCG+AGG | + | chr1_3:17793905-17793924 | Msa0107440:intron | 40.0% | |
| AAGCAGAAAACTGGAACAAG+GGG | - | chr1_3:17794597-17794616 | None:intergenic | 40.0% | |
| CAAAGCAGAAAACTGGAACA+AGG | - | chr1_3:17794599-17794618 | None:intergenic | 40.0% | |
| ! | CTTGTTCCAGTTTTCTGCTT+TGG | + | chr1_3:17794597-17794616 | Msa0107440:CDS | 40.0% |
| GGACACCACCAAAAATAGTA+AGG | - | chr1_3:17794729-17794748 | None:intergenic | 40.0% | |
| ATGAGCTTAACTCAGTCGAT+GGG | - | chr1_3:17794793-17794812 | None:intergenic | 40.0% | |
| ! | AAAAAAGGCTGGTTGATTGG+AGG | - | chr1_3:17794849-17794868 | None:intergenic | 40.0% |
| CAGTGGATGACTATACTTGA+GGG | - | chr1_3:17795076-17795095 | None:intergenic | 40.0% | |
| ! | TCCTTTTATGTTCCTCCTAG+TGG | + | chr1_3:17795098-17795117 | Msa0107440:intron | 40.0% |
| ACCACTAGGAGGAACATAAA+AGG | - | chr1_3:17795102-17795121 | None:intergenic | 40.0% | |
| ACTCCTTGCCTTAAACCTAA+AGG | - | chr1_3:17795166-17795185 | None:intergenic | 40.0% | |
| ! | AGGTTTAAGGCAAGGAGTTA+TGG | + | chr1_3:17795168-17795187 | Msa0107440:intron | 40.0% |
| GCAGATGATACTTTGTTCCT+CGG | + | chr1_3:17795216-17795235 | Msa0107440:intron | 40.0% | |
| AAAAGAGGATTCACCCTCAA+AGG | - | chr1_3:17795385-17795404 | None:intergenic | 40.0% | |
| ! | TTTGAGGGTGAATCCTCTTT+TGG | + | chr1_3:17795384-17795403 | Msa0107440:intron | 40.0% |
| TGTCATGTACACTCCAAAAG+AGG | - | chr1_3:17795400-17795419 | None:intergenic | 40.0% | |
| GAAGTAAGGGCCGAATTAAA+GGG | - | chr1_3:17795496-17795515 | None:intergenic | 40.0% | |
| TGAAGTAAGGGCCGAATTAA+AGG | - | chr1_3:17795497-17795516 | None:intergenic | 40.0% | |
| ACAACTGAAAGGTAGAAGGT+GGG | - | chr1_3:17795523-17795542 | None:intergenic | 40.0% | |
| GATCCGAATTCACAACTGAA+AGG | - | chr1_3:17795534-17795553 | None:intergenic | 40.0% | |
| ! | TTCCCTCTTTTGGTCTCTAT+AGG | + | chr1_3:17795894-17795913 | Msa0107440:intron | 40.0% |
| GACAACATATGGGGATTTCA+AGG | + | chr1_3:17796120-17796139 | Msa0107440:intron | 40.0% | |
| CTACCATACCTTTAGATCGA+TGG | + | chr1_3:17796160-17796179 | Msa0107440:intron | 40.0% | |
| ACCATACCTTTAGATCGATG+GGG | + | chr1_3:17796162-17796181 | Msa0107440:intron | 40.0% | |
| TCCCATGGTTGAAGAAGTAA+AGG | - | chr1_3:17796233-17796252 | None:intergenic | 40.0% | |
| AAAATCCTAGCGTAATTGGG+TGG | - | chr1_3:17796284-17796303 | None:intergenic | 40.0% | |
| CCTCAAAATCCTAGCGTAAT+TGG | - | chr1_3:17796288-17796307 | None:intergenic | 40.0% | |
| ! | CCAATTACGCTAGGATTTTG+AGG | + | chr1_3:17796285-17796304 | Msa0107440:intron | 40.0% |
| GACGAAATTGATCAATCCAG+GGG | - | chr1_3:17796344-17796363 | None:intergenic | 40.0% | |
| GGACGAAATTGATCAATCCA+GGG | - | chr1_3:17796345-17796364 | None:intergenic | 40.0% | |
| AGGACGAAATTGATCAATCC+AGG | - | chr1_3:17796346-17796365 | None:intergenic | 40.0% | |
| AACAAGGGTAATTGGAAGCA+AGG | - | chr1_3:17796380-17796399 | None:intergenic | 40.0% | |
| TAGGACTAGGCAGAGAAAAA+TGG | - | chr1_3:17796538-17796557 | None:intergenic | 40.0% | |
| ACAATGTTAGCGAACCTTAG+TGG | + | chr1_3:17796636-17796655 | Msa0107440:intron | 40.0% | |
| ACTCAAAGGAGATACCACTA+AGG | - | chr1_3:17796653-17796672 | None:intergenic | 40.0% | |
| TGAGGCATAGTACAACTCAA+AGG | - | chr1_3:17796667-17796686 | None:intergenic | 40.0% | |
| !! | CTTTTCCAGAGTCTTATGGT+GGG | + | chr1_3:17796808-17796827 | Msa0107440:intron | 40.0% |
| CTATGGAAGGAAAACCATTG+GGG | + | chr1_3:17796913-17796932 | Msa0107440:intron | 40.0% | |
| AAAACCATTGGGGAGAATAG+TGG | + | chr1_3:17796923-17796942 | Msa0107440:intron | 40.0% | |
| CTTGGTCATACCCTTTATTC+AGG | + | chr1_3:17796990-17797009 | Msa0107440:intron | 40.0% | |
| TGGTCATACCCTTTATTCAG+GGG | + | chr1_3:17796992-17797011 | Msa0107440:intron | 40.0% | |
| !!! | CTGATATTTTGGGGAGTACT+CGG | + | chr1_3:17797527-17797546 | Msa0107440:CDS | 40.0% |
| !!! | TGATATTTTGGGGAGTACTC+GGG | + | chr1_3:17797528-17797547 | Msa0107440:CDS | 40.0% |
| TAGAACAGAGCTCAGTAACA+TGG | + | chr1_3:17797984-17798003 | Msa0107440:intron | 40.0% | |
| AGCATTCGAGATTGGTAAGT+TGG | - | chr1_3:17798087-17798106 | None:intergenic | 40.0% | |
| TAGAGGACATACATTGGGAA+TGG | - | chr1_3:17798345-17798364 | None:intergenic | 40.0% | |
| CTCATTTCTCAAGGTAGATG+AGG | - | chr1_3:17798417-17798436 | None:intergenic | 40.0% | |
| ATGCAGAGAGAAATCAATCG+AGG | + | chr1_3:17798448-17798467 | Msa0107440:intron | 40.0% | |
| AGGACCATAAAAGTGATGAG+TGG | + | chr1_3:17798468-17798487 | Msa0107440:intron | 40.0% | |
| CTGCAAAGACTATGTTCCTA+AGG | - | chr1_3:17798592-17798611 | None:intergenic | 40.0% | |
| AGAGGAGAACAGATATCATG+AGG | - | chr1_3:17798820-17798839 | None:intergenic | 40.0% | |
| CAAGAATCCATTGTATGTCG+TGG | + | chr1_3:17798860-17798879 | Msa0107440:CDS | 40.0% | |
| AATCCATTGTATGTCGTGGT+GGG | + | chr1_3:17798864-17798883 | Msa0107440:CDS | 40.0% | |
| TTCACCATCGGATATACTTC+TGG | + | chr1_3:17798961-17798980 | Msa0107440:intron | 40.0% | |
| !!! | TGCACCTTAGTGTTTTTTGG+TGG | + | chr1_3:17799345-17799364 | Msa0107440:intron | 40.0% |
| AAGAAACTCACTGTGTACTC+TGG | - | chr1_3:17799579-17799598 | None:intergenic | 40.0% | |
| !!! | GTAGCATTGGCTCTGTGTTT+TGG | + | chr1_3:17791507-17791526 | Msa0107440:CDS | 45.0% |
| AGTGTTTATGGTGCTTCCTG+CGG | + | chr1_3:17791727-17791746 | Msa0107440:CDS | 45.0% | |
| CGTCTAAGTGAAGCGTGATA+GGG | - | chr1_3:17791934-17791953 | None:intergenic | 45.0% | |
| TCGTCTAAGTGAAGCGTGAT+AGG | - | chr1_3:17791935-17791954 | None:intergenic | 45.0% | |
| CTGGTGGTTTAAGAGAGCAA+AGG | + | chr1_3:17792153-17792172 | Msa0107440:intron | 45.0% | |
| CCGAATGGAAAAACTGAGTG+TGG | - | chr1_3:17792841-17792860 | None:intergenic | 45.0% | |
| AGTTGCATGTTAGTACCTGG+TGG | + | chr1_3:17793099-17793118 | Msa0107440:CDS | 45.0% | |
| ATGGTGCTTACATACAGGGA+CGG | - | chr1_3:17793363-17793382 | None:intergenic | 45.0% | |
| AGCAGAAAACTGGAACAAGG+GGG | - | chr1_3:17794596-17794615 | None:intergenic | 45.0% | |
| ! | TCCAGTTTTCTGCTTTGGTC+AGG | + | chr1_3:17794602-17794621 | Msa0107440:CDS | 45.0% |
| ACCTGACCAAAGCAGAAAAC+TGG | - | chr1_3:17794606-17794625 | None:intergenic | 45.0% | |
| AAGGTTCAGGGTTCAAACTC+CGG | - | chr1_3:17794750-17794769 | None:intergenic | 45.0% | |
| TGAGCTTAACTCAGTCGATG+GGG | - | chr1_3:17794792-17794811 | None:intergenic | 45.0% | |
| CATGAGCTTAACTCAGTCGA+TGG | - | chr1_3:17794794-17794813 | None:intergenic | 45.0% | |
| AATGATGTGGAGTCACGCTT+TGG | + | chr1_3:17794953-17794972 | Msa0107440:intron | 45.0% | |
| CCAGTGGATGACTATACTTG+AGG | - | chr1_3:17795077-17795096 | None:intergenic | 45.0% | |
| CCTCAAGTATAGTCATCCAC+TGG | + | chr1_3:17795074-17795093 | Msa0107440:intron | 45.0% | |
| AGGAACATAAAAGGAGCCAG+TGG | - | chr1_3:17795093-17795112 | None:intergenic | 45.0% | |
| TATGTTCCTCCTAGTGGTAG+AGG | + | chr1_3:17795104-17795123 | Msa0107440:intron | 45.0% | |
| ATGTTCCTCCTAGTGGTAGA+GGG | + | chr1_3:17795105-17795124 | Msa0107440:intron | 45.0% | |
| TCTCAACAAATGCTTCACCG+AGG | - | chr1_3:17795236-17795255 | None:intergenic | 45.0% | |
| GGACTCTTAAGGCCATCATA+TGG | + | chr1_3:17795262-17795281 | Msa0107440:intron | 45.0% | |
| AACTGAAAGGTAGAAGGTGG+GGG | - | chr1_3:17795521-17795540 | None:intergenic | 45.0% | |
| CAACTGAAAGGTAGAAGGTG+GGG | - | chr1_3:17795522-17795541 | None:intergenic | 45.0% | |
| CACAACTGAAAGGTAGAAGG+TGG | - | chr1_3:17795524-17795543 | None:intergenic | 45.0% | |
| CCTTGAACGATGCATAGGAA+GGG | - | chr1_3:17796042-17796061 | None:intergenic | 45.0% | |
| CCTTCCTATGCATCGTTCAA+GGG | + | chr1_3:17796040-17796059 | Msa0107440:intron | 45.0% | |
| ATCGTTCAAGGGAAGGTAGT+TGG | + | chr1_3:17796051-17796070 | Msa0107440:intron | 45.0% | |
| TCCCCATCGATCTAAAGGTA+TGG | - | chr1_3:17796166-17796185 | None:intergenic | 45.0% | |
| TGACATCCCCATCGATCTAA+AGG | - | chr1_3:17796171-17796190 | None:intergenic | 45.0% | |
| ACTCTAACCATCAACCACCA+TGG | + | chr1_3:17796190-17796209 | Msa0107440:intron | 45.0% | |
| GTGGAAGGATCGTCATGAAA+GGG | - | chr1_3:17796265-17796284 | None:intergenic | 45.0% | |
| TCTCTGCCTAGTCCTACTAT+TGG | + | chr1_3:17796542-17796561 | Msa0107440:intron | 45.0% | |
| CTCTGCCTAGTCCTACTATT+GGG | + | chr1_3:17796543-17796562 | Msa0107440:intron | 45.0% | |
| ATGAGAAGGCGGTTTAAGTG+AGG | - | chr1_3:17796685-17796704 | None:intergenic | 45.0% | |
| ATCGCATGAATCTTGCAGAG+GGG | - | chr1_3:17796780-17796799 | None:intergenic | 45.0% | |
| GATCGCATGAATCTTGCAGA+GGG | - | chr1_3:17796781-17796800 | None:intergenic | 45.0% | |
| TGATCGCATGAATCTTGCAG+AGG | - | chr1_3:17796782-17796801 | None:intergenic | 45.0% | |
| !! | GCTTTTCCAGAGTCTTATGG+TGG | + | chr1_3:17796807-17796826 | Msa0107440:intron | 45.0% |
| ACGGAGAGCTATGTTAGGTT+TGG | + | chr1_3:17796831-17796850 | Msa0107440:intron | 45.0% | |
| TTGTCCACTATTCTCCCCAA+TGG | - | chr1_3:17796930-17796949 | None:intergenic | 45.0% | |
| TCATACCCTTTATTCAGGGG+AGG | + | chr1_3:17796995-17797014 | Msa0107440:intron | 45.0% | |
| TTCCACCTCCCCTGAATAAA+GGG | - | chr1_3:17797003-17797022 | None:intergenic | 45.0% | |
| GTGATCGATCAGGTGAATCT+TGG | + | chr1_3:17797055-17797074 | Msa0107440:intron | 45.0% | |
| ATACTACTAGTCCGCCTAGA+AGG | - | chr1_3:17797120-17797139 | None:intergenic | 45.0% | |
| !! | TAGGCGGACTAGTAGTATGT+AGG | + | chr1_3:17797122-17797141 | Msa0107440:intron | 45.0% |
| !! | AGGCGGACTAGTAGTATGTA+GGG | + | chr1_3:17797123-17797142 | Msa0107440:intron | 45.0% |
| ATCAAGCGCCAATCTGAACA+AGG | + | chr1_3:17797686-17797705 | Msa0107440:intron | 45.0% | |
| ATCTAACATTGACCGGACGA+AGG | - | chr1_3:17797900-17797919 | None:intergenic | 45.0% | |
| !!! | ATTTTTAGTGGGGACCACTG+AGG | + | chr1_3:17798514-17798533 | Msa0107440:intron | 45.0% |
| TGAAGTTTCCTTTGCCTCAG+TGG | - | chr1_3:17798531-17798550 | None:intergenic | 45.0% | |
| GAATCCATTGTATGTCGTGG+TGG | + | chr1_3:17798863-17798882 | Msa0107440:CDS | 45.0% | |
| ! | GGTTCCAGAAGTATATCCGA+TGG | - | chr1_3:17798968-17798987 | None:intergenic | 45.0% |
| !!! | CAAATATTTTTTTTTTTTTA+TGG | + | chr1_3:17791663-17791682 | Msa0107440:intron | 5.0% |
| !! | AAATTTATATTTAACATATT+TGG | + | chr1_3:17792220-17792239 | Msa0107440:intron | 5.0% |
| !! | AATTTATATTTAACATATTT+GGG | + | chr1_3:17792221-17792240 | Msa0107440:intron | 5.0% |
| !!! | TTATTTTCTTATTATTATAA+AGG | + | chr1_3:17794673-17794692 | Msa0107440:intron | 5.0% |
| TTATATGCAGCATGGGTGCG+AGG | + | chr1_3:17793137-17793156 | Msa0107440:CDS | 50.0% | |
| GTGCGAGGTACGTGACATTA+TGG | + | chr1_3:17793152-17793171 | Msa0107440:intron | 50.0% | |
| ! | TGTGATGACGTGCCCAAACT+CGG | - | chr1_3:17793560-17793579 | None:intergenic | 50.0% |
| ATTCCGGGGTAGAGTTCACT+AGG | + | chr1_3:17793618-17793637 | Msa0107440:intron | 50.0% | |
| TGGAGTCACGCTTTGGTACT+AGG | + | chr1_3:17794960-17794979 | Msa0107440:intron | 50.0% | |
| AGTCACGCTTTGGTACTAGG+TGG | + | chr1_3:17794963-17794982 | Msa0107440:intron | 50.0% | |
| TGTTCCTCCTAGTGGTAGAG+GGG | + | chr1_3:17795106-17795125 | Msa0107440:intron | 50.0% | |
| GAAGGTGGGGGTTGAAGTAA+GGG | - | chr1_3:17795509-17795528 | None:intergenic | 50.0% | |
| AGAAGGTGGGGGTTGAAGTA+AGG | - | chr1_3:17795510-17795529 | None:intergenic | 50.0% | |
| CCCTTCCTATGCATCGTTCA+AGG | + | chr1_3:17796039-17796058 | Msa0107440:intron | 50.0% | |
| CCCTTGAACGATGCATAGGA+AGG | - | chr1_3:17796043-17796062 | None:intergenic | 50.0% | |
| CCTTCCCTTGAACGATGCAT+AGG | - | chr1_3:17796047-17796066 | None:intergenic | 50.0% | |
| CCTATGCATCGTTCAAGGGA+AGG | + | chr1_3:17796044-17796063 | Msa0107440:intron | 50.0% | |
| TTCAATCTCGTCGGACTCCA+TGG | - | chr1_3:17796210-17796229 | None:intergenic | 50.0% | |
| GAAGGATCGTCATGAAAGGG+CGG | - | chr1_3:17796262-17796281 | None:intergenic | 50.0% | |
| GGTGGAAGGATCGTCATGAA+AGG | - | chr1_3:17796266-17796285 | None:intergenic | 50.0% | |
| TCCTTCCACCCAATTACGCT+AGG | + | chr1_3:17796276-17796295 | Msa0107440:intron | 50.0% | |
| TCCTAGCGTAATTGGGTGGA+AGG | - | chr1_3:17796280-17796299 | None:intergenic | 50.0% | |
| GATCAATCCAGGGGCTTAAG+AGG | - | chr1_3:17796335-17796354 | None:intergenic | 50.0% | |
| GACGAAGAGCAGACTCTATG+GGG | - | chr1_3:17796440-17796459 | None:intergenic | 50.0% | |
| GGACGAAGAGCAGACTCTAT+GGG | - | chr1_3:17796441-17796460 | None:intergenic | 50.0% | |
| AGGACGAAGAGCAGACTCTA+TGG | - | chr1_3:17796442-17796461 | None:intergenic | 50.0% | |
| GGGATGGTCCTTCTTGCATA+TGG | + | chr1_3:17796720-17796739 | Msa0107440:intron | 50.0% | |
| ! | TCCAGAGTCTTATGGTGGGA+CGG | + | chr1_3:17796812-17796831 | Msa0107440:intron | 50.0% |
| TACCCTTTATTCAGGGGAGG+TGG | + | chr1_3:17796998-17797017 | Msa0107440:intron | 50.0% | |
| GTTCCACCTCCCCTGAATAA+AGG | - | chr1_3:17797004-17797023 | None:intergenic | 50.0% | |
| GGTGGAACTTGTGATCGATC+AGG | + | chr1_3:17797016-17797035 | Msa0107440:intron | 50.0% | |
| CTAGAAGGTGAGAGGAAGGA+TGG | - | chr1_3:17797105-17797124 | None:intergenic | 50.0% | |
| CATCCTTCCTCTCACCTTCT+AGG | + | chr1_3:17797103-17797122 | Msa0107440:intron | 50.0% | |
| !! | GTTGGCTTAGTGATGATGGG+TGG | + | chr1_3:17797163-17797182 | Msa0107440:intron | 50.0% |
| ! | CAGATTGGCGCTTGATTCGT+GGG | - | chr1_3:17797682-17797701 | None:intergenic | 50.0% |
| ! | TCAGATTGGCGCTTGATTCG+TGG | - | chr1_3:17797683-17797702 | None:intergenic | 50.0% |
| CATTGACCGGACGAAGGTTA+GGG | - | chr1_3:17797894-17797913 | None:intergenic | 50.0% | |
| ACATTGACCGGACGAAGGTT+AGG | - | chr1_3:17797895-17797914 | None:intergenic | 50.0% | |
| CTACCCACCACGACATACAA+TGG | - | chr1_3:17798870-17798889 | None:intergenic | 50.0% | |
| TTCGGAACCAACAAGAGAGC+AGG | + | chr1_3:17798911-17798930 | Msa0107440:CDS | 50.0% | |
| ATATGGAGGTTGGGTCACCT+GGG | - | chr1_3:17799524-17799543 | None:intergenic | 50.0% | |
| AATATGGAGGTTGGGTCACC+TGG | - | chr1_3:17799525-17799544 | None:intergenic | 50.0% | |
| GAACGACACAAGACTCAAGC+TGG | + | chr1_3:17799620-17799639 | Msa0107440:CDS | 50.0% | |
| AGTGTTTCGCGGTTTCCACC+AGG | - | chr1_3:17793117-17793136 | None:intergenic | 55.0% | |
| TCGCCTAGTGAACTCTACCC+CGG | - | chr1_3:17793624-17793643 | None:intergenic | 55.0% | |
| GCAGCTGCTCATGTACTTGC+AGG | + | chr1_3:17793653-17793672 | Msa0107440:intron | 55.0% | |
| GTTCCTCCTAGTGGTAGAGG+GGG | + | chr1_3:17795107-17795126 | Msa0107440:intron | 55.0% | |
| TCGGACTCCATGGTGGTTGA+TGG | - | chr1_3:17796200-17796219 | None:intergenic | 55.0% | |
| AATCTCGTCGGACTCCATGG+TGG | - | chr1_3:17796207-17796226 | None:intergenic | 55.0% | |
| GATCGTCATGAAAGGGCGGA+AGG | - | chr1_3:17796258-17796277 | None:intergenic | 55.0% | |
| ACCACAACCTCTTAAGCCCC+TGG | + | chr1_3:17796325-17796344 | Msa0107440:intron | 55.0% | |
| TCCAGGGGCTTAAGAGGTTG+TGG | - | chr1_3:17796329-17796348 | None:intergenic | 55.0% | |
| TCCGTCCCACCATAAGACTC+TGG | - | chr1_3:17796816-17796835 | None:intergenic | 55.0% | |
| GTGGGACGGAGAGCTATGTT+AGG | + | chr1_3:17796826-17796845 | Msa0107440:intron | 55.0% | |
| CCTTCCTCTCACCTTCTAGG+CGG | + | chr1_3:17797106-17797125 | Msa0107440:intron | 55.0% | |
| TAGTCCGCCTAGAAGGTGAG+AGG | - | chr1_3:17797113-17797132 | None:intergenic | 55.0% | |
| GTCAAGCCCTAACCTTCGTC+CGG | + | chr1_3:17797885-17797904 | Msa0107440:intron | 55.0% | |
| !! | CGTGGTGGGTAGACCAATTC+AGG | + | chr1_3:17798878-17798897 | Msa0107440:CDS | 55.0% |
| CGCTTTGGTACTAGGTGGCG+TGG | + | chr1_3:17794968-17794987 | Msa0107440:intron | 60.0% | |
| TTGGTACTAGGTGGCGTGGC+TGG | + | chr1_3:17794972-17794991 | Msa0107440:intron | 60.0% | |
| ATCGCACCCCCTCTACCACT+AGG | - | chr1_3:17795116-17795135 | None:intergenic | 60.0% | |
| ! | GTGGTAGAGGGGGTGCGATT+AGG | + | chr1_3:17795117-17795136 | Msa0107440:intron | 60.0% |
| AAAGGGCGGAAGGCTTCCCA+TGG | - | chr1_3:17796248-17796267 | None:intergenic | 60.0% | |
| CCGCCTAGAAGGTGAGAGGA+AGG | - | chr1_3:17797109-17797128 | None:intergenic | 60.0% | |
| AGTGGGGACCACTGAGGCAA+AGG | + | chr1_3:17798520-17798539 | Msa0107440:intron | 60.0% | |
| GCACCCCCTCTACCACTAGG+AGG | - | chr1_3:17795113-17795132 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17791468 | 17799705 | 17791468 | ID=Msa0107440;Name=Msa0107440 |
| chr1_3 | mRNA | 17791468 | 17799705 | 17791468 | ID=Msa0107440-mRNA-1;Parent=Msa0107440;Name=Msa0107440-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.37|0.33|1|1|1|9|32|308 |
| chr1_3 | exon | 17791468 | 17791598 | 17791468 | ID=Msa0107440-mRNA-1:exon:6667;Parent=Msa0107440-mRNA-1 |
| chr1_3 | exon | 17791709 | 17791783 | 17791709 | ID=Msa0107440-mRNA-1:exon:6668;Parent=Msa0107440-mRNA-1 |
| chr1_3 | exon | 17791901 | 17791986 | 17791901 | ID=Msa0107440-mRNA-1:exon:6669;Parent=Msa0107440-mRNA-1 |
| chr1_3 | exon | 17792824 | 17792927 | 17792824 | ID=Msa0107440-mRNA-1:exon:6670;Parent=Msa0107440-mRNA-1 |
| chr1_3 | exon | 17793003 | 17793158 | 17793003 | ID=Msa0107440-mRNA-1:exon:6671;Parent=Msa0107440-mRNA-1 |
| chr1_3 | exon | 17794537 | 17794623 | 17794537 | ID=Msa0107440-mRNA-1:exon:6672;Parent=Msa0107440-mRNA-1 |
| chr1_3 | exon | 17797452 | 17797549 | 17797452 | ID=Msa0107440-mRNA-1:exon:6673;Parent=Msa0107440-mRNA-1 |
| chr1_3 | exon | 17798845 | 17798932 | 17798845 | ID=Msa0107440-mRNA-1:exon:6674;Parent=Msa0107440-mRNA-1 |
| chr1_3 | exon | 17799572 | 17799705 | 17799572 | ID=Msa0107440-mRNA-1:exon:6675;Parent=Msa0107440-mRNA-1 |
| chr1_3 | CDS | 17791468 | 17791598 | 17791468 | ID=Msa0107440-mRNA-1:cds;Parent=Msa0107440-mRNA-1 |
| chr1_3 | CDS | 17791709 | 17791783 | 17791709 | ID=Msa0107440-mRNA-1:cds;Parent=Msa0107440-mRNA-1 |
| chr1_3 | CDS | 17791901 | 17791986 | 17791901 | ID=Msa0107440-mRNA-1:cds;Parent=Msa0107440-mRNA-1 |
| chr1_3 | CDS | 17792824 | 17792927 | 17792824 | ID=Msa0107440-mRNA-1:cds;Parent=Msa0107440-mRNA-1 |
| chr1_3 | CDS | 17793003 | 17793158 | 17793003 | ID=Msa0107440-mRNA-1:cds;Parent=Msa0107440-mRNA-1 |
| chr1_3 | CDS | 17794537 | 17794623 | 17794537 | ID=Msa0107440-mRNA-1:cds;Parent=Msa0107440-mRNA-1 |
| chr1_3 | CDS | 17797452 | 17797549 | 17797452 | ID=Msa0107440-mRNA-1:cds;Parent=Msa0107440-mRNA-1 |
| chr1_3 | CDS | 17798845 | 17798932 | 17798845 | ID=Msa0107440-mRNA-1:cds;Parent=Msa0107440-mRNA-1 |
| chr1_3 | CDS | 17799572 | 17799673 | 17799572 | ID=Msa0107440-mRNA-1:cds;Parent=Msa0107440-mRNA-1 |
| chr1_3 | three_prime_UTR | 17799674 | 17799705 | 17799674 | ID=Msa0107440-mRNA-1:three_prime_utr;Parent=Msa0107440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
