Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107360 | XP_013466815.1 | 98.378 | 370 | 6 | 0 | 1 | 370 | 1 | 370 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107360 | sp|P93324|CHOMT_MEDSA | 52.703 | 370 | 167 | 6 | 5 | 370 | 7 | 372 | 6.06e-134 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107360 | A0A072VH10 | 98.378 | 370 | 6 | 0 | 1 | 370 | 1 | 370 | 0.0 | 757 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107360 | Msa0107380 | 0.846461 | 2.140916e-59 | -8.615850e-47 |
| Msa0107360 | Msa1348600 | 0.802021 | 6.834481e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107360 | MtrunA17_Chr1g0163601 | 98.378 | 370 | 6 | 0 | 1 | 370 | 1 | 370 | 0.0 | 757 |
| Msa0107360 | MtrunA17_Chr1g0163611 | 88.378 | 370 | 43 | 0 | 1 | 370 | 1 | 370 | 0.0 | 694 |
| Msa0107360 | MtrunA17_Chr1g0163621 | 79.730 | 370 | 74 | 1 | 1 | 370 | 16 | 384 | 0.0 | 594 |
| Msa0107360 | MtrunA17_Chr7g0218131 | 52.561 | 371 | 168 | 6 | 3 | 370 | 5 | 370 | 8.29e-136 | 392 |
| Msa0107360 | MtrunA17_Chr1g0200491 | 52.162 | 370 | 169 | 6 | 5 | 370 | 7 | 372 | 5.79e-134 | 387 |
| Msa0107360 | MtrunA17_Chr7g0218181 | 50.134 | 373 | 173 | 6 | 2 | 370 | 4 | 367 | 2.87e-129 | 375 |
| Msa0107360 | MtrunA17_Chr7g0218261 | 50.270 | 370 | 177 | 5 | 3 | 370 | 4 | 368 | 9.13e-129 | 374 |
| Msa0107360 | MtrunA17_Chr7g0218211 | 48.787 | 371 | 182 | 5 | 3 | 370 | 4 | 369 | 6.78e-127 | 369 |
| Msa0107360 | MtrunA17_Chr2g0307521 | 51.143 | 350 | 163 | 5 | 23 | 370 | 20 | 363 | 4.69e-126 | 367 |
| Msa0107360 | MtrunA17_Chr7g0218271 | 49.598 | 373 | 181 | 6 | 3 | 370 | 5 | 375 | 5.04e-125 | 364 |
| Msa0107360 | MtrunA17_Chr7g0218301 | 49.462 | 372 | 181 | 6 | 4 | 370 | 6 | 375 | 1.04e-123 | 361 |
| Msa0107360 | MtrunA17_Chr3g0085211 | 51.253 | 359 | 167 | 6 | 14 | 370 | 18 | 370 | 7.06e-123 | 359 |
| Msa0107360 | MtrunA17_Chr3g0085201 | 48.626 | 364 | 177 | 7 | 10 | 370 | 1 | 357 | 8.03e-115 | 338 |
| Msa0107360 | MtrunA17_Chr3g0128011 | 43.785 | 354 | 190 | 5 | 19 | 370 | 71 | 417 | 7.12e-103 | 310 |
| Msa0107360 | MtrunA17_Chr7g0276401 | 43.700 | 373 | 195 | 8 | 3 | 370 | 13 | 375 | 1.20e-97 | 295 |
| Msa0107360 | MtrunA17_Chr8g0367441 | 41.292 | 356 | 198 | 6 | 19 | 370 | 29 | 377 | 1.07e-91 | 280 |
| Msa0107360 | MtrunA17_Chr5g0448091 | 39.891 | 366 | 208 | 7 | 10 | 370 | 5 | 363 | 1.42e-91 | 279 |
| Msa0107360 | MtrunA17_Chr8g0367451 | 41.011 | 356 | 199 | 6 | 19 | 370 | 28 | 376 | 9.56e-90 | 275 |
| Msa0107360 | MtrunA17_Chr7g0276411 | 41.011 | 356 | 199 | 6 | 19 | 370 | 14 | 362 | 3.52e-89 | 273 |
| Msa0107360 | MtrunA17_Chr8g0367491 | 39.496 | 357 | 199 | 7 | 21 | 370 | 30 | 376 | 8.88e-89 | 272 |
| Msa0107360 | MtrunA17_Chr8g0367501 | 38.482 | 369 | 215 | 7 | 8 | 370 | 3 | 365 | 9.86e-86 | 266 |
| Msa0107360 | MtrunA17_Chr8g0367381 | 39.564 | 321 | 168 | 5 | 19 | 336 | 29 | 326 | 1.43e-77 | 241 |
| Msa0107360 | MtrunA17_Chr8g0345851 | 44.014 | 284 | 147 | 6 | 93 | 370 | 13 | 290 | 4.27e-77 | 239 |
| Msa0107360 | MtrunA17_Chr1g0170931 | 85.246 | 122 | 18 | 0 | 22 | 143 | 5 | 126 | 5.09e-69 | 213 |
| Msa0107360 | MtrunA17_Chr2g0314271 | 35.616 | 365 | 220 | 7 | 10 | 370 | 1 | 354 | 1.31e-61 | 201 |
| Msa0107360 | MtrunA17_Chr3g0130011 | 35.180 | 361 | 218 | 9 | 15 | 370 | 9 | 358 | 1.21e-59 | 196 |
| Msa0107360 | MtrunA17_Chr3g0130061 | 35.359 | 362 | 216 | 11 | 15 | 370 | 9 | 358 | 1.24e-55 | 186 |
| Msa0107360 | MtrunA17_Chr4g0022021 | 35.168 | 327 | 186 | 12 | 38 | 354 | 44 | 354 | 2.82e-51 | 175 |
| Msa0107360 | MtrunA17_Chr6g0482291 | 44.624 | 186 | 92 | 3 | 186 | 370 | 1 | 176 | 2.77e-50 | 166 |
| Msa0107360 | MtrunA17_Chr4g0021981 | 33.642 | 324 | 195 | 11 | 38 | 354 | 44 | 354 | 9.58e-48 | 166 |
| Msa0107360 | MtrunA17_Chr3g0121301 | 40.196 | 204 | 118 | 3 | 160 | 359 | 149 | 352 | 2.28e-47 | 164 |
| Msa0107360 | MtrunA17_Chr1g0188391 | 31.193 | 327 | 203 | 9 | 38 | 354 | 33 | 347 | 6.12e-43 | 152 |
| Msa0107360 | MtrunA17_Chr4g0046361 | 32.381 | 315 | 194 | 8 | 65 | 369 | 55 | 360 | 6.69e-42 | 150 |
| Msa0107360 | MtrunA17_Chr5g0432251 | 36.323 | 223 | 135 | 4 | 152 | 369 | 138 | 358 | 7.82e-41 | 147 |
| Msa0107360 | MtrunA17_Chr7g0219161 | 32.069 | 290 | 186 | 6 | 70 | 355 | 62 | 344 | 8.42e-41 | 147 |
| Msa0107360 | MtrunA17_Chr4g0046531 | 29.969 | 327 | 208 | 6 | 35 | 354 | 30 | 342 | 2.99e-40 | 151 |
| Msa0107360 | MtrunA17_Chr4g0046531 | 29.394 | 330 | 220 | 4 | 28 | 354 | 385 | 704 | 9.99e-40 | 149 |
| Msa0107360 | MtrunA17_Chr4g0040621 | 31.579 | 285 | 186 | 3 | 75 | 355 | 77 | 356 | 2.11e-39 | 144 |
| Msa0107360 | MtrunA17_Chr7g0219141 | 29.762 | 336 | 220 | 8 | 38 | 369 | 33 | 356 | 2.27e-39 | 143 |
| Msa0107360 | MtrunA17_Chr1g0170941 | 78.947 | 76 | 16 | 0 | 194 | 269 | 1 | 76 | 2.36e-39 | 134 |
| Msa0107360 | MtrunA17_Chr1g0188371 | 29.179 | 329 | 210 | 8 | 30 | 348 | 25 | 340 | 2.83e-39 | 143 |
| Msa0107360 | MtrunA17_Chr4g0014561 | 30.931 | 333 | 216 | 7 | 30 | 355 | 25 | 350 | 5.05e-39 | 142 |
| Msa0107360 | MtrunA17_Chr5g0432301 | 36.279 | 215 | 130 | 4 | 160 | 369 | 147 | 359 | 2.41e-38 | 140 |
| Msa0107360 | MtrunA17_Chr4g0014681 | 30.631 | 333 | 217 | 7 | 30 | 355 | 25 | 350 | 5.09e-38 | 140 |
| Msa0107360 | MtrunA17_Chr4g0014641 | 31.077 | 325 | 210 | 8 | 38 | 355 | 33 | 350 | 5.82e-38 | 139 |
| Msa0107360 | MtrunA17_Chr5g0432211 | 37.441 | 211 | 127 | 3 | 150 | 355 | 122 | 332 | 7.33e-38 | 139 |
| Msa0107360 | MtrunA17_Chr7g0223231 | 28.286 | 350 | 211 | 8 | 18 | 354 | 14 | 336 | 2.82e-37 | 137 |
| Msa0107360 | MtrunA17_Chr7g0223241 | 30.240 | 334 | 203 | 8 | 30 | 354 | 24 | 336 | 3.69e-37 | 137 |
| Msa0107360 | MtrunA17_Chr5g0432241 | 34.978 | 223 | 138 | 4 | 152 | 369 | 139 | 359 | 3.83e-37 | 137 |
| Msa0107360 | MtrunA17_Chr5g0432261 | 40.237 | 169 | 96 | 2 | 204 | 369 | 160 | 326 | 1.23e-36 | 135 |
| Msa0107360 | MtrunA17_Chr4g0046341 | 32.588 | 313 | 199 | 7 | 65 | 369 | 55 | 363 | 4.21e-36 | 134 |
| Msa0107360 | MtrunA17_Chr1g0170951 | 78.082 | 73 | 16 | 0 | 280 | 352 | 17 | 89 | 8.77e-36 | 126 |
| Msa0107360 | MtrunA17_Chr8g0367401 | 49.091 | 110 | 56 | 0 | 163 | 272 | 2 | 111 | 1.53e-34 | 124 |
| Msa0107360 | MtrunA17_Chr4g0014661 | 30.120 | 332 | 214 | 7 | 30 | 355 | 25 | 344 | 3.92e-29 | 115 |
| Msa0107360 | MtrunA17_Chr4g0014591 | 29.963 | 267 | 172 | 6 | 29 | 292 | 24 | 278 | 2.04e-25 | 105 |
| Msa0107360 | MtrunA17_Chr8g0367461 | 42.105 | 114 | 63 | 2 | 258 | 370 | 1 | 112 | 1.55e-24 | 96.7 |
| Msa0107360 | MtrunA17_Chr7g0219171 | 38.060 | 134 | 77 | 3 | 239 | 369 | 117 | 247 | 4.34e-24 | 99.8 |
| Msa0107360 | MtrunA17_Chr8g0367421 | 39.091 | 110 | 50 | 1 | 163 | 272 | 2 | 94 | 3.90e-21 | 88.2 |
| Msa0107360 | MtrunA17_Chr4g0014601 | 29.435 | 248 | 159 | 7 | 30 | 274 | 25 | 259 | 8.97e-20 | 87.8 |
| Msa0107360 | MtrunA17_Chr8g0367391 | 43.564 | 101 | 54 | 2 | 271 | 370 | 36 | 134 | 1.03e-18 | 81.6 |
| Msa0107360 | MtrunA17_Chr8g0367411 | 32.540 | 126 | 80 | 2 | 14 | 137 | 3 | 125 | 1.40e-17 | 79.0 |
| Msa0107360 | MtrunA17_Chr8g0367481 | 36.134 | 119 | 71 | 2 | 19 | 135 | 29 | 144 | 1.56e-16 | 76.3 |
| Msa0107360 | MtrunA17_Chr8g0367471 | 44.118 | 68 | 38 | 0 | 186 | 253 | 1 | 68 | 6.01e-16 | 72.8 |
| Msa0107360 | MtrunA17_Chr6g0476581 | 46.154 | 91 | 41 | 2 | 3 | 90 | 5 | 90 | 5.35e-14 | 67.8 |
| Msa0107360 | MtrunA17_Chr6g0482281 | 36.364 | 121 | 70 | 3 | 19 | 135 | 33 | 150 | 2.27e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107360 | AT5G54160.1 | 46.471 | 340 | 173 | 4 | 19 | 356 | 17 | 349 | 5.11e-104 | 311 |
| Msa0107360 | AT1G77520.1 | 40.701 | 371 | 201 | 10 | 12 | 370 | 18 | 381 | 1.17e-88 | 272 |
| Msa0107360 | AT1G51990.2 | 38.872 | 337 | 194 | 6 | 19 | 349 | 13 | 343 | 5.65e-79 | 247 |
| Msa0107360 | AT1G51990.1 | 38.872 | 337 | 194 | 6 | 19 | 349 | 13 | 343 | 1.27e-78 | 246 |
| Msa0107360 | AT1G33030.1 | 38.571 | 350 | 202 | 9 | 25 | 370 | 10 | 350 | 1.20e-75 | 238 |
| Msa0107360 | AT1G63140.2 | 39.835 | 364 | 198 | 10 | 19 | 370 | 27 | 381 | 1.66e-75 | 238 |
| Msa0107360 | AT1G63140.4 | 39.835 | 364 | 198 | 10 | 19 | 370 | 47 | 401 | 2.47e-75 | 239 |
| Msa0107360 | AT1G77530.1 | 40.162 | 371 | 203 | 9 | 12 | 370 | 18 | 381 | 4.01e-73 | 232 |
| Msa0107360 | AT5G53810.1 | 39.017 | 346 | 195 | 9 | 35 | 370 | 39 | 378 | 4.56e-64 | 209 |
| Msa0107360 | AT1G21130.1 | 39.617 | 366 | 198 | 11 | 1 | 356 | 9 | 361 | 7.34e-64 | 208 |
| Msa0107360 | AT1G21100.1 | 40.407 | 344 | 186 | 10 | 23 | 356 | 27 | 361 | 8.39e-63 | 205 |
| Msa0107360 | AT1G76790.1 | 40.634 | 347 | 185 | 11 | 23 | 357 | 17 | 354 | 1.10e-62 | 205 |
| Msa0107360 | AT3G53140.1 | 36.676 | 349 | 199 | 9 | 16 | 353 | 7 | 344 | 2.21e-61 | 201 |
| Msa0107360 | AT1G21110.1 | 39.535 | 344 | 189 | 10 | 23 | 356 | 27 | 361 | 1.05e-60 | 200 |
| Msa0107360 | AT1G21120.1 | 39.826 | 344 | 188 | 10 | 23 | 356 | 27 | 361 | 5.46e-60 | 198 |
| Msa0107360 | AT1G21120.2 | 39.826 | 344 | 188 | 10 | 23 | 356 | 75 | 409 | 4.70e-59 | 197 |
| Msa0107360 | AT5G37170.1 | 37.736 | 318 | 156 | 10 | 62 | 370 | 50 | 334 | 9.54e-57 | 188 |
| Msa0107360 | AT1G62900.1 | 42.647 | 204 | 113 | 3 | 169 | 370 | 4 | 205 | 6.13e-51 | 169 |
| Msa0107360 | AT5G37170.2 | 44.500 | 200 | 106 | 4 | 174 | 370 | 37 | 234 | 7.05e-51 | 170 |
| Msa0107360 | AT5G37170.3 | 45.745 | 188 | 97 | 4 | 186 | 370 | 1 | 186 | 2.09e-49 | 165 |
| Msa0107360 | AT1G63140.1 | 40.152 | 264 | 141 | 7 | 19 | 272 | 47 | 303 | 3.25e-49 | 168 |
| Msa0107360 | AT1G33030.3 | 37.549 | 253 | 148 | 7 | 25 | 274 | 10 | 255 | 8.57e-48 | 163 |
| Msa0107360 | AT1G33030.2 | 37.450 | 251 | 147 | 7 | 25 | 272 | 10 | 253 | 6.59e-47 | 160 |
| Msa0107360 | AT4G35150.1 | 36.058 | 208 | 123 | 4 | 157 | 354 | 103 | 310 | 4.49e-42 | 150 |
| Msa0107360 | AT1G21130.2 | 38.571 | 280 | 151 | 9 | 1 | 272 | 9 | 275 | 1.07e-38 | 140 |
| Msa0107360 | AT4G35160.1 | 37.561 | 205 | 118 | 4 | 160 | 354 | 163 | 367 | 9.19e-38 | 140 |
| Msa0107360 | AT1G63140.3 | 38.430 | 242 | 132 | 7 | 19 | 250 | 47 | 281 | 1.43e-37 | 137 |
| Msa0107360 | AT1G77530.2 | 38.554 | 249 | 138 | 7 | 12 | 250 | 18 | 261 | 1.74e-35 | 131 |
Find 63 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCAATATCCTTCAATTA+AGG | 0.132120 | 1_3:-17584905 | Msa0107360:CDS |
| TGATGCAAAGGATGCAATTT+TGG | 0.209173 | 1_3:-17585145 | Msa0107360:CDS |
| TTCAGCTTGTATGTCATAAC+TGG | 0.238308 | 1_3:-17584466 | Msa0107360:intron |
| ACTGCAAGCCACATGAAATT+TGG | 0.238630 | 1_3:+17584226 | None:intergenic |
| TCAAGCCTCTCAGCCAATTC+AGG | 0.269845 | 1_3:+17586826 | None:intergenic |
| ACAATCACTTTCCCATGTTT+TGG | 0.276979 | 1_3:+17584395 | None:intergenic |
| GCCAATTCAGGGTGTTGATT+TGG | 0.300679 | 1_3:+17586838 | None:intergenic |
| ACATGGGAAAGTGATTGTTT+TGG | 0.324846 | 1_3:-17584390 | Msa0107360:CDS |
| TTCTTTCTTACCATCTTCAT+TGG | 0.332460 | 1_3:+17586750 | None:intergenic |
| AAACGCTGTTACACCCTCTA+TGG | 0.338465 | 1_3:+17586644 | None:intergenic |
| CAAATCCTTTGTAAAATTGA+AGG | 0.338738 | 1_3:+17584989 | None:intergenic |
| CTGGTCCACTAGAAATTAAA+AGG | 0.360373 | 1_3:-17585014 | Msa0107360:CDS |
| TTGCTAGGGTTTGGCACCTC+TGG | 0.367599 | 1_3:+17584356 | None:intergenic |
| ACAGCAGCATTTAGTATTGC+AGG | 0.368682 | 1_3:+17586949 | None:intergenic |
| TCTCAATATCCTTCAATTAA+GGG | 0.372954 | 1_3:-17584904 | Msa0107360:CDS |
| TAATTTCATAGCAAAGAATA+AGG | 0.385825 | 1_3:-17584084 | Msa0107360:three_prime_UTR |
| TCCAAATCAACACCCTGAAT+TGG | 0.385842 | 1_3:-17586839 | Msa0107360:CDS |
| AACAAAGCAATGGCTCATTC+TGG | 0.386461 | 1_3:-17585033 | Msa0107360:CDS |
| GTTTATGCTCTTTCTCCAAT+TGG | 0.400779 | 1_3:-17586724 | Msa0107360:CDS |
| AAATTAATTCCCTTAATTGA+AGG | 0.411591 | 1_3:+17584895 | None:intergenic |
| AACTTACATCTTACAAAGCT+TGG | 0.415651 | 1_3:+17584051 | None:intergenic |
| ACAAGTGAGAAGAGAGTAAC+TGG | 0.420394 | 1_3:+17586783 | None:intergenic |
| TTAGACATATTGCTAGGGTT+TGG | 0.425493 | 1_3:+17584347 | None:intergenic |
| AGTGATGCCTCAGCCTTGTC+TGG | 0.429790 | 1_3:-17584206 | Msa0107360:CDS |
| CATGCAAAGTATTGACCAAT+TGG | 0.436185 | 1_3:+17586709 | None:intergenic |
| ATAGAGGGTGTAACAGCGTT+TGG | 0.472633 | 1_3:-17586642 | Msa0107360:intron |
| GTCTCAACGTTGGTTGATGT+TGG | 0.478000 | 1_3:-17584961 | Msa0107360:CDS |
| GCATGCTTAGACATATTGCT+AGG | 0.482902 | 1_3:+17584341 | None:intergenic |
| AAAGTTACTTACTAGTAACT+TGG | 0.485082 | 1_3:-17584159 | Msa0107360:three_prime_UTR |
| TCCATTCGTACCAATGAAGA+TGG | 0.486141 | 1_3:-17586760 | Msa0107360:CDS |
| ACCATCTTCATTGGTACGAA+TGG | 0.499723 | 1_3:+17586759 | None:intergenic |
| CACAAAGCTTTACCAAAACA+TGG | 0.501741 | 1_3:-17584407 | Msa0107360:CDS |
| CAAAATGCACCTTCTCATCC+AGG | 0.503022 | 1_3:-17584853 | Msa0107360:intron |
| CTCAGCCTTGTCTGGAGTGA+TGG | 0.508490 | 1_3:-17584198 | Msa0107360:CDS |
| GTTGATGTTGGAGGTGGAGT+AGG | 0.512057 | 1_3:-17584949 | Msa0107360:CDS |
| GAGAACTTATGTAAGAGAGC+TGG | 0.513125 | 1_3:-17584254 | Msa0107360:CDS |
| TGATAGTGATGGAGGCTCAT+TGG | 0.521138 | 1_3:-17586686 | Msa0107360:CDS |
| CTCTCAACATTAATCCATAG+AGG | 0.522712 | 1_3:-17586658 | Msa0107360:CDS |
| CAAGCCTCTCAGCCAATTCA+GGG | 0.537180 | 1_3:+17586827 | None:intergenic |
| GTAGGGCTGGAGCATGTTGG+AGG | 0.549331 | 1_3:-17584629 | Msa0107360:intron |
| CATGCTTAGACATATTGCTA+GGG | 0.550831 | 1_3:+17584342 | None:intergenic |
| TTTGTAGGGCTGGAGCATGT+TGG | 0.554565 | 1_3:-17584632 | Msa0107360:intron |
| ATGTTTGAAAGTGTTCCAAC+TGG | 0.556069 | 1_3:-17584602 | Msa0107360:CDS |
| ACGTTGGTTGATGTTGGAGG+TGG | 0.561128 | 1_3:-17584955 | Msa0107360:CDS |
| AAATAATCTTGCTACTAATG+AGG | 0.564642 | 1_3:-17587031 | Msa0107360:CDS |
| CTCTTGCAGGGGTGATGCAA+AGG | 0.569383 | 1_3:-17585157 | Msa0107360:intron |
| TGGTGATGCCATTGTACTAA+AGG | 0.569713 | 1_3:-17584582 | Msa0107360:intron |
| TCAACGTTGGTTGATGTTGG+AGG | 0.571903 | 1_3:-17584958 | Msa0107360:CDS |
| CTATGGATTAATGTTGAGAG+TGG | 0.594140 | 1_3:+17586661 | None:intergenic |
| TGAACGTATGTTGACTGTGT+TGG | 0.597359 | 1_3:-17586806 | Msa0107360:CDS |
| TGATACTTGTAACAAAGCAA+TGG | 0.601012 | 1_3:-17585043 | Msa0107360:CDS |
| AGTACAATGGCATCACCAGT+TGG | 0.602472 | 1_3:+17584587 | None:intergenic |
| TAGACCAACCTTTAGTACAA+TGG | 0.611062 | 1_3:+17584574 | None:intergenic |
| TACTTTGCATGTGATAGTGA+TGG | 0.613904 | 1_3:-17586697 | Msa0107360:CDS |
| TCAGCTTGTATGTCATAACT+GGG | 0.621256 | 1_3:-17584465 | Msa0107360:intron |
| AACACCCTGAATTGGCTGAG+AGG | 0.629156 | 1_3:-17586831 | Msa0107360:CDS |
| TTTGGATTATATAATTCCAG+AGG | 0.632094 | 1_3:-17584372 | Msa0107360:CDS |
| AAATTCCATCACTCCAGACA+AGG | 0.633094 | 1_3:+17584193 | None:intergenic |
| TCTCAACATTAATCCATAGA+GGG | 0.635757 | 1_3:-17586657 | Msa0107360:CDS |
| CATCACTCCAGACAAGGCTG+AGG | 0.653766 | 1_3:+17584199 | None:intergenic |
| ACAAAGCTTTACCAAAACAT+GGG | 0.663342 | 1_3:-17584406 | Msa0107360:CDS |
| ATTTGAAGGAGTCTCAACGT+TGG | 0.664672 | 1_3:-17584971 | Msa0107360:CDS |
| TTTGCATGTGATAGTGATGG+AGG | 0.694243 | 1_3:-17586694 | Msa0107360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr1_3:17585768-17585787 | Msa0107360:intron | 0.0% |
| !!! | ATTAACTAAAATTTTATTGA+AGG | + | chr1_3:17584692-17584711 | None:intergenic | 10.0% |
| !!! | AAAATTTCTCAAATAAATTT+TGG | + | chr1_3:17585015-17585034 | None:intergenic | 10.0% |
| !!! | AAAATTTATTTGAGAAATTT+TGG | - | chr1_3:17585014-17585033 | Msa0107360:CDS | 10.0% |
| !!! | AAATTTATTTGAGAAATTTT+GGG | - | chr1_3:17585015-17585034 | Msa0107360:CDS | 10.0% |
| !!! | AGTATTTCTTTTATATATTT+TGG | - | chr1_3:17585710-17585729 | Msa0107360:intron | 10.0% |
| !! | AATAGATAATTTAAACAATT+TGG | - | chr1_3:17586465-17586484 | Msa0107360:intron | 10.0% |
| !! | AAAGAAAAATAAAATGATTA+AGG | + | chr1_3:17586509-17586528 | None:intergenic | 10.0% |
| !!! | ATTGTTATTATGTTTTAGTA+GGG | - | chr1_3:17584024-17584043 | Msa0107360:three_prime_UTR | 15.0% |
| !!! | ACATACTTTTTTTTATAGTT+TGG | + | chr1_3:17584482-17584501 | None:intergenic | 15.0% |
| !!! | ATATTTATCTTCTTTTTAGA+GGG | - | chr1_3:17584530-17584549 | Msa0107360:intron | 15.0% |
| !!! | TAAAAAGGAAATTTTATCTT+AGG | - | chr1_3:17585049-17585068 | Msa0107360:CDS | 15.0% |
| !! | TTTATATTTGAATCTTTAAC+TGG | - | chr1_3:17585138-17585157 | Msa0107360:CDS | 15.0% |
| !!! | TTTTTGGACAAAAATAAATA+GGG | + | chr1_3:17585190-17585209 | None:intergenic | 15.0% |
| !!! | TTTTTTGGACAAAAATAAAT+AGG | + | chr1_3:17585191-17585210 | None:intergenic | 15.0% |
| !!! | ACAAATTGAAAGATATTTTT+TGG | + | chr1_3:17585206-17585225 | None:intergenic | 15.0% |
| !!! | AATTTGTATTTTCAAAACTA+TGG | - | chr1_3:17585219-17585238 | Msa0107360:intron | 15.0% |
| !! | TTAACTTTCTCTTTATAAAT+GGG | + | chr1_3:17585420-17585439 | None:intergenic | 15.0% |
| !!! | TTTAACTTTCTCTTTATAAA+TGG | + | chr1_3:17585421-17585440 | None:intergenic | 15.0% |
| !!! | AATATTTTTCAAAGTATCAA+TGG | - | chr1_3:17585893-17585912 | Msa0107360:intron | 15.0% |
| !!! | ATATTTTTCAAAGTATCAAT+GGG | - | chr1_3:17585894-17585913 | Msa0107360:intron | 15.0% |
| !! | AACGAGAATATAAAAAAAAA+TGG | - | chr1_3:17586221-17586240 | Msa0107360:intron | 15.0% |
| !!! | AAGATTATTTTGCTTAGTAT+TGG | + | chr1_3:17583960-17583979 | None:intergenic | 20.0% |
| !!! | CATTGTTATTATGTTTTAGT+AGG | - | chr1_3:17584023-17584042 | Msa0107360:three_prime_UTR | 20.0% |
| !!! | CCTTGAATTTAATTTTTTGT+TGG | + | chr1_3:17584445-17584464 | None:intergenic | 20.0% |
| !! | CCAACAAAAAATTAAATTCA+AGG | - | chr1_3:17584442-17584461 | Msa0107360:CDS | 20.0% |
| !!! | CATATTTATCTTCTTTTTAG+AGG | - | chr1_3:17584529-17584548 | Msa0107360:intron | 20.0% |
| !! | CTACTATCTATAATTTCATA+GGG | + | chr1_3:17584607-17584626 | None:intergenic | 20.0% |
| !! | ACTACTATCTATAATTTCAT+AGG | + | chr1_3:17584608-17584627 | None:intergenic | 20.0% |
| !! | ATTTAGACATTGAAAAATAG+TGG | + | chr1_3:17584763-17584782 | None:intergenic | 20.0% |
| !! | TTCAATGTCTAAATAAAAGA+TGG | - | chr1_3:17584769-17584788 | Msa0107360:intron | 20.0% |
| !!! | TTTCTCAAATAAATTTTGGA+CGG | + | chr1_3:17585011-17585030 | None:intergenic | 20.0% |
| !! | CTAAATTACTTGACAAAAAA+AGG | + | chr1_3:17585287-17585306 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCAAGTAATTTAG+TGG | - | chr1_3:17585287-17585306 | Msa0107360:intron | 20.0% |
| !! | AAAATATTGTATTATGTGTC+CGG | + | chr1_3:17585364-17585383 | None:intergenic | 20.0% |
| !! | CTATTGAAATTCAACAAATT+GGG | - | chr1_3:17585515-17585534 | Msa0107360:intron | 20.0% |
| !! | TTTGGACCATTAATTAAATT+TGG | + | chr1_3:17585553-17585572 | None:intergenic | 20.0% |
| !! | TAATTAATGGTCCAAATATT+CGG | - | chr1_3:17585557-17585576 | Msa0107360:intron | 20.0% |
| !!! | ACATTTGTTTTTGTTTATGA+TGG | + | chr1_3:17585591-17585610 | None:intergenic | 20.0% |
| !!! | TTTGTCCTAAATTTTTGTTT+TGG | + | chr1_3:17585738-17585757 | None:intergenic | 20.0% |
| !!! | TGAAAAATATTTTTGACATC+AGG | + | chr1_3:17585884-17585903 | None:intergenic | 20.0% |
| !! | AAATTAATTCCCTTAATTGA+AGG | + | chr1_3:17586109-17586128 | None:intergenic | 20.0% |
| !! | TCTCGTTATTATTATAGTAT+TGG | + | chr1_3:17586208-17586227 | None:intergenic | 20.0% |
| !! | TGACAATATGTTTATATAAG+AGG | - | chr1_3:17586257-17586276 | Msa0107360:intron | 20.0% |
| !! | ACAAACACAATAAAAGTTTA+TGG | + | chr1_3:17586354-17586373 | None:intergenic | 20.0% |
| !!! | TAAACTTTTATTGTGTTTGT+AGG | - | chr1_3:17586354-17586373 | Msa0107360:intron | 20.0% |
| !!! | AAACTTTTATTGTGTTTGTA+GGG | - | chr1_3:17586355-17586374 | Msa0107360:intron | 20.0% |
| !! | TAATTTCATAGCAAAGAATA+AGG | - | chr1_3:17586917-17586936 | Msa0107360:CDS | 20.0% |
| ! | AAATAATCTTGCTACTAATG+AGG | - | chr1_3:17583970-17583989 | Msa0107360:three_prime_UTR | 25.0% |
| ! | AATAAAATTCTCCGAAATAG+TGG | + | chr1_3:17584951-17584970 | None:intergenic | 25.0% |
| ! | AAATATTGTATTATGTGTCC+GGG | + | chr1_3:17585363-17585382 | None:intergenic | 25.0% |
| !!! | CCAATTTGTTGAATTTCAAT+AGG | + | chr1_3:17585517-17585536 | None:intergenic | 25.0% |
| ! | CCTATTGAAATTCAACAAAT+TGG | - | chr1_3:17585514-17585533 | Msa0107360:intron | 25.0% |
| ! | GGGAATCCAAATTTAATTAA+TGG | - | chr1_3:17585544-17585563 | Msa0107360:intron | 25.0% |
| ! | AATTAATGGTCCAAATATTC+GGG | - | chr1_3:17585558-17585577 | Msa0107360:intron | 25.0% |
| ! | TGGAACCAAAACAAAAATTT+AGG | - | chr1_3:17585730-17585749 | Msa0107360:intron | 25.0% |
| ! | CAAATCCTTTGTAAAATTGA+AGG | + | chr1_3:17586015-17586034 | None:intergenic | 25.0% |
| !! | CAATTTTACAAAGGATTTGA+AGG | - | chr1_3:17586016-17586035 | Msa0107360:intron | 25.0% |
| !! | TTGAGAGATAATGAGTTTTA+GGG | + | chr1_3:17586083-17586102 | None:intergenic | 25.0% |
| !! | ATTGAGAGATAATGAGTTTT+AGG | + | chr1_3:17586084-17586103 | None:intergenic | 25.0% |
| ! | TCTCAATATCCTTCAATTAA+GGG | - | chr1_3:17586097-17586116 | Msa0107360:intron | 25.0% |
| !! | AGAGATTGATATATTTTACC+TGG | + | chr1_3:17586169-17586188 | None:intergenic | 25.0% |
| ! | TTTGGATTATATAATTCCAG+AGG | - | chr1_3:17586629-17586648 | Msa0107360:intron | 25.0% |
| ! | AAAGTTACTTACTAGTAACT+TGG | - | chr1_3:17586842-17586861 | Msa0107360:CDS | 25.0% |
| ! | CATTTTTGCTAGGTTCTTTA+TGG | + | chr1_3:17583933-17583952 | None:intergenic | 30.0% |
| !! | TATTGGAACTCATTTTTGCT+AGG | + | chr1_3:17583943-17583962 | None:intergenic | 30.0% |
| TTCTTTCTTACCATCTTCAT+TGG | + | chr1_3:17584254-17584273 | None:intergenic | 30.0% | |
| TCTCAACATTAATCCATAGA+GGG | - | chr1_3:17584344-17584363 | Msa0107360:CDS | 30.0% | |
| TAGGGTCGATTATTGTTAAA+AGG | + | chr1_3:17584589-17584608 | None:intergenic | 30.0% | |
| TGGATGTATTCAGAAATACA+TGG | + | chr1_3:17584847-17584866 | None:intergenic | 30.0% | |
| ACAGTCTACAAAAAAAGTAG+TGG | + | chr1_3:17584886-17584905 | None:intergenic | 30.0% | |
| TTTATCAAGCGAGCTAAAAT+CGG | - | chr1_3:17585382-17585401 | Msa0107360:intron | 30.0% | |
| ! | TAAGTATTTTTCGTGAGAGT+TGG | - | chr1_3:17585480-17585499 | Msa0107360:intron | 30.0% |
| TCTAAACATCTTTCCATGTT+TGG | - | chr1_3:17585610-17585629 | Msa0107360:intron | 30.0% | |
| ! | ATATGATTTTGTTCTCTTGC+AGG | - | chr1_3:17585831-17585850 | Msa0107360:intron | 30.0% |
| ! | TATGATTTTGTTCTCTTGCA+GGG | - | chr1_3:17585832-17585851 | Msa0107360:intron | 30.0% |
| TGATACTTGTAACAAAGCAA+TGG | - | chr1_3:17585958-17585977 | Msa0107360:intron | 30.0% | |
| !!! | AGGATCCTTTTAATTTCTAG+TGG | + | chr1_3:17585995-17586014 | None:intergenic | 30.0% |
| ! | AGGATCCTTCAATTTTACAA+AGG | - | chr1_3:17586007-17586026 | Msa0107360:intron | 30.0% |
| CTCTCAATATCCTTCAATTA+AGG | - | chr1_3:17586096-17586115 | Msa0107360:intron | 30.0% | |
| ! | TATATTTTACCTGGATGAGA+AGG | + | chr1_3:17586160-17586179 | None:intergenic | 30.0% |
| TAGTTCCAAGAAAGAAATTG+TGG | + | chr1_3:17586331-17586350 | None:intergenic | 30.0% | |
| ACAAAGCTTTACCAAAACAT+GGG | - | chr1_3:17586595-17586614 | Msa0107360:intron | 30.0% | |
| !!! | CTCATGTTTTTAGTAACAAC+TGG | - | chr1_3:17586699-17586718 | Msa0107360:CDS | 30.0% |
| !!! | GTTTTTAGTAACAACTGGAA+AGG | - | chr1_3:17586704-17586723 | Msa0107360:CDS | 30.0% |
| ! | TGGATTTTCCAAATTTCATG+TGG | - | chr1_3:17586767-17586786 | Msa0107360:CDS | 30.0% |
| AACTTACATCTTACAAAGCT+TGG | + | chr1_3:17586953-17586972 | None:intergenic | 30.0% | |
| GTTTATGCTCTTTCTCCAAT+TGG | - | chr1_3:17584277-17584296 | Msa0107360:CDS | 35.0% | |
| !! | CATGCAAAGTATTGACCAAT+TGG | + | chr1_3:17584295-17584314 | None:intergenic | 35.0% |
| ! | TACTTTGCATGTGATAGTGA+TGG | - | chr1_3:17584304-17584323 | Msa0107360:CDS | 35.0% |
| ! | CTATGGATTAATGTTGAGAG+TGG | + | chr1_3:17584343-17584362 | None:intergenic | 35.0% |
| CTCTCAACATTAATCCATAG+AGG | - | chr1_3:17584343-17584362 | Msa0107360:CDS | 35.0% | |
| !! | ATAGTGGATACTAGAGTATC+TGG | + | chr1_3:17584747-17584766 | None:intergenic | 35.0% |
| ! | GTGGATATTAGAGCATCATT+TGG | + | chr1_3:17584867-17584886 | None:intergenic | 35.0% |
| GGCATTAAGCAACAAAATAG+TGG | + | chr1_3:17584909-17584928 | None:intergenic | 35.0% | |
| ! | TTGTTGACTGTCCACTATTT+CGG | - | chr1_3:17584937-17584956 | Msa0107360:CDS | 35.0% |
| TCAGTCCAAATCAGTCATAA+AGG | - | chr1_3:17584971-17584990 | Msa0107360:CDS | 35.0% | |
| TGGGCACTAGAAGTTTAAAA+AGG | - | chr1_3:17585034-17585053 | Msa0107360:CDS | 35.0% | |
| CTTGTTAACCAATGCTCTTA+GGG | + | chr1_3:17585166-17585185 | None:intergenic | 35.0% | |
| TCTTGTTAACCAATGCTCTT+AGG | + | chr1_3:17585167-17585186 | None:intergenic | 35.0% | |
| AGAGAGAATAACAAATGACG+AGG | - | chr1_3:17585254-17585273 | Msa0107360:intron | 35.0% | |
| GGCTAAAATTTCACCTCTTA+AGG | - | chr1_3:17585308-17585327 | Msa0107360:intron | 35.0% | |
| ACCTCTTAAGGTGAATAAGT+TGG | - | chr1_3:17585320-17585339 | Msa0107360:intron | 35.0% | |
| TCCAACTTATTCACCTTAAG+AGG | + | chr1_3:17585324-17585343 | None:intergenic | 35.0% | |
| TTATCAAGCGAGCTAAAATC+GGG | - | chr1_3:17585383-17585402 | Msa0107360:intron | 35.0% | |
| !! | TATTTTTCGTGAGAGTTGGT+AGG | - | chr1_3:17585484-17585503 | Msa0107360:intron | 35.0% |
| !!! | ATTTTTCGTGAGAGTTGGTA+GGG | - | chr1_3:17585485-17585504 | Msa0107360:intron | 35.0% |
| TGGTTATAGTCCCGAATATT+TGG | + | chr1_3:17585571-17585590 | None:intergenic | 35.0% | |
| ! | ATGATTTTGTTCTCTTGCAG+GGG | - | chr1_3:17585833-17585852 | Msa0107360:intron | 35.0% |
| ! | TGATGCAAAGGATGCAATTT+TGG | - | chr1_3:17585856-17585875 | Msa0107360:intron | 35.0% |
| CTGGTCCACTAGAAATTAAA+AGG | - | chr1_3:17585987-17586006 | Msa0107360:intron | 35.0% | |
| CACAACCACAATTTCTTTCT+TGG | - | chr1_3:17586323-17586342 | Msa0107360:intron | 35.0% | |
| ! | TTTTATTGTGTTTGTAGGGC+TGG | - | chr1_3:17586359-17586378 | Msa0107360:intron | 35.0% |
| !! | ATGTTTGAAAGTGTTCCAAC+TGG | - | chr1_3:17586399-17586418 | Msa0107360:intron | 35.0% |
| TAGACCAACCTTTAGTACAA+TGG | + | chr1_3:17586430-17586449 | None:intergenic | 35.0% | |
| TTCAGCTTGTATGTCATAAC+TGG | - | chr1_3:17586535-17586554 | Msa0107360:intron | 35.0% | |
| TCAGCTTGTATGTCATAACT+GGG | - | chr1_3:17586536-17586555 | Msa0107360:intron | 35.0% | |
| !!! | CATGTTTTGGTAAAGCTTTG+TGG | + | chr1_3:17586596-17586615 | None:intergenic | 35.0% |
| CACAAAGCTTTACCAAAACA+TGG | - | chr1_3:17586594-17586613 | Msa0107360:intron | 35.0% | |
| ! | ACAATCACTTTCCCATGTTT+TGG | + | chr1_3:17586609-17586628 | None:intergenic | 35.0% |
| ! | ACATGGGAAAGTGATTGTTT+TGG | - | chr1_3:17586611-17586630 | Msa0107360:intron | 35.0% |
| TTAGACATATTGCTAGGGTT+TGG | + | chr1_3:17586657-17586676 | None:intergenic | 35.0% | |
| CATGCTTAGACATATTGCTA+GGG | + | chr1_3:17586662-17586681 | None:intergenic | 35.0% | |
| ACAGCAGCATTTAGTATTGC+AGG | + | chr1_3:17584055-17584074 | None:intergenic | 40.0% | |
| TCCAAATCAACACCCTGAAT+TGG | - | chr1_3:17584162-17584181 | Msa0107360:three_prime_UTR | 40.0% | |
| ! | TGAACGTATGTTGACTGTGT+TGG | - | chr1_3:17584195-17584214 | Msa0107360:CDS | 40.0% |
| ACAAGTGAGAAGAGAGTAAC+TGG | + | chr1_3:17584221-17584240 | None:intergenic | 40.0% | |
| TCCATTCGTACCAATGAAGA+TGG | - | chr1_3:17584241-17584260 | Msa0107360:CDS | 40.0% | |
| ACCATCTTCATTGGTACGAA+TGG | + | chr1_3:17584245-17584264 | None:intergenic | 40.0% | |
| ! | TTTGCATGTGATAGTGATGG+AGG | - | chr1_3:17584307-17584326 | Msa0107360:CDS | 40.0% |
| GTCCAAATCAGTCATAAAGG+AGG | - | chr1_3:17584974-17584993 | Msa0107360:CDS | 40.0% | |
| GACCTCCTTTATGACTGATT+TGG | + | chr1_3:17584979-17584998 | None:intergenic | 40.0% | |
| TATCAAGCGAGCTAAAATCG+GGG | - | chr1_3:17585384-17585403 | Msa0107360:intron | 40.0% | |
| ATTCAACAAATTGGGTCAGC+AGG | - | chr1_3:17585523-17585542 | Msa0107360:intron | 40.0% | |
| TTCAACAAATTGGGTCAGCA+GGG | - | chr1_3:17585524-17585543 | Msa0107360:intron | 40.0% | |
| TGTCTGTGTATAGCCAAACA+TGG | + | chr1_3:17585626-17585645 | None:intergenic | 40.0% | |
| AACAAAGCAATGGCTCATTC+TGG | - | chr1_3:17585968-17585987 | Msa0107360:intron | 40.0% | |
| ATTTGAAGGAGTCTCAACGT+TGG | - | chr1_3:17586030-17586049 | Msa0107360:intron | 40.0% | |
| ! | GGTGCATTTTGAACAACTTG+TGG | + | chr1_3:17586139-17586158 | None:intergenic | 40.0% |
| !!! | CACCTCACAAACTGCTTTTT+TGG | - | chr1_3:17586288-17586307 | Msa0107360:intron | 40.0% |
| CTCCAAAAAAGCAGTTTGTG+AGG | + | chr1_3:17586293-17586312 | None:intergenic | 40.0% | |
| ! | TGGTGATGCCATTGTACTAA+AGG | - | chr1_3:17586419-17586438 | Msa0107360:intron | 40.0% |
| GATGCCATTGTACTAAAGGT+TGG | - | chr1_3:17586423-17586442 | Msa0107360:intron | 40.0% | |
| GCATGCTTAGACATATTGCT+AGG | + | chr1_3:17586663-17586682 | None:intergenic | 40.0% | |
| GAGAACTTATGTAAGAGAGC+TGG | - | chr1_3:17586747-17586766 | Msa0107360:CDS | 40.0% | |
| ACTGCAAGCCACATGAAATT+TGG | + | chr1_3:17586778-17586797 | None:intergenic | 40.0% | |
| AAATTCCATCACTCCAGACA+AGG | + | chr1_3:17586811-17586830 | None:intergenic | 40.0% | |
| !! | GCCAATTCAGGGTGTTGATT+TGG | + | chr1_3:17584166-17584185 | None:intergenic | 45.0% |
| ! | TGATAGTGATGGAGGCTCAT+TGG | - | chr1_3:17584315-17584334 | Msa0107360:CDS | 45.0% |
| AAACGCTGTTACACCCTCTA+TGG | + | chr1_3:17584360-17584379 | None:intergenic | 45.0% | |
| ! | ATAGAGGGTGTAACAGCGTT+TGG | - | chr1_3:17584359-17584378 | Msa0107360:CDS | 45.0% |
| GGACAGTCAACAAGCAACAA+AGG | + | chr1_3:17584930-17584949 | None:intergenic | 45.0% | |
| GATGTTCGAATTTCGACTCC+CGG | - | chr1_3:17585342-17585361 | Msa0107360:intron | 45.0% | |
| ! | GTCTCAACGTTGGTTGATGT+TGG | - | chr1_3:17586040-17586059 | Msa0107360:intron | 45.0% |
| ! | TCAACGTTGGTTGATGTTGG+AGG | - | chr1_3:17586043-17586062 | Msa0107360:intron | 45.0% |
| CAAAATGCACCTTCTCATCC+AGG | - | chr1_3:17586148-17586167 | Msa0107360:intron | 45.0% | |
| AGTACAATGGCATCACCAGT+TGG | + | chr1_3:17586417-17586436 | None:intergenic | 45.0% | |
| AACACCCTGAATTGGCTGAG+AGG | - | chr1_3:17584170-17584189 | Msa0107360:exon | 50.0% | |
| CAAGCCTCTCAGCCAATTCA+GGG | + | chr1_3:17584177-17584196 | None:intergenic | 50.0% | |
| TCAAGCCTCTCAGCCAATTC+AGG | + | chr1_3:17584178-17584197 | None:intergenic | 50.0% | |
| ! | AACTGGTGCCCTAAGAGCAT+TGG | - | chr1_3:17585155-17585174 | Msa0107360:intron | 50.0% |
| ! | ACGTTGGTTGATGTTGGAGG+TGG | - | chr1_3:17586046-17586065 | Msa0107360:intron | 50.0% |
| GTTGATGTTGGAGGTGGAGT+AGG | - | chr1_3:17586052-17586071 | Msa0107360:intron | 50.0% | |
| TTTGTAGGGCTGGAGCATGT+TGG | - | chr1_3:17586369-17586388 | Msa0107360:intron | 50.0% | |
| CTCTTGCAGGGGTGATGCAA+AGG | - | chr1_3:17585844-17585863 | Msa0107360:intron | 55.0% | |
| TTGCTAGGGTTTGGCACCTC+TGG | + | chr1_3:17586648-17586667 | None:intergenic | 55.0% | |
| ! | AGTGATGCCTCAGCCTTGTC+TGG | - | chr1_3:17586795-17586814 | Msa0107360:CDS | 55.0% |
| CATCACTCCAGACAAGGCTG+AGG | + | chr1_3:17586805-17586824 | None:intergenic | 55.0% | |
| ! | CTCAGCCTTGTCTGGAGTGA+TGG | - | chr1_3:17586803-17586822 | Msa0107360:CDS | 55.0% |
| GTAGGGCTGGAGCATGTTGG+AGG | - | chr1_3:17586372-17586391 | Msa0107360:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17583930 | 17587093 | 17583930 | ID=Msa0107360;Name=Msa0107360 |
| chr1_3 | mRNA | 17583930 | 17587093 | 17583930 | ID=Msa0107360-mRNA-1;Parent=Msa0107360;Name=Msa0107360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=20|1|1|1|0.75|0.6|5|234|370 |
| chr1_3 | exon | 17583930 | 17584124 | 17583930 | ID=Msa0107360-mRNA-1:exon:6605;Parent=Msa0107360-mRNA-1 |
| chr1_3 | exon | 17584145 | 17584483 | 17584145 | ID=Msa0107360-mRNA-1:exon:6604;Parent=Msa0107360-mRNA-1 |
| chr1_3 | exon | 17584583 | 17584647 | 17584583 | ID=Msa0107360-mRNA-1:exon:6603;Parent=Msa0107360-mRNA-1 |
| chr1_3 | exon | 17584854 | 17585170 | 17584854 | ID=Msa0107360-mRNA-1:exon:6602;Parent=Msa0107360-mRNA-1 |
| chr1_3 | exon | 17586643 | 17587093 | 17586643 | ID=Msa0107360-mRNA-1:exon:6601;Parent=Msa0107360-mRNA-1 |
| chr1_3 | five_prime_UTR | 17587074 | 17587093 | 17587074 | ID=Msa0107360-mRNA-1:five_prime_utr;Parent=Msa0107360-mRNA-1 |
| chr1_3 | CDS | 17586643 | 17587073 | 17586643 | ID=Msa0107360-mRNA-1:cds;Parent=Msa0107360-mRNA-1 |
| chr1_3 | CDS | 17584854 | 17585170 | 17584854 | ID=Msa0107360-mRNA-1:cds;Parent=Msa0107360-mRNA-1 |
| chr1_3 | CDS | 17584583 | 17584647 | 17584583 | ID=Msa0107360-mRNA-1:cds;Parent=Msa0107360-mRNA-1 |
| chr1_3 | CDS | 17584184 | 17584483 | 17584184 | ID=Msa0107360-mRNA-1:cds;Parent=Msa0107360-mRNA-1 |
| chr1_3 | three_prime_UTR | 17584145 | 17584183 | 17584145 | ID=Msa0107360-mRNA-1:three_prime_utr;Parent=Msa0107360-mRNA-1 |
| chr1_3 | three_prime_UTR | 17583930 | 17584124 | 17583930 | ID=Msa0107360-mRNA-1:three_prime_utr;Parent=Msa0107360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
