Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107380 | XP_013466815.1 | 65.502 | 229 | 21 | 3 | 5 | 175 | 142 | 370 | 1.64e-89 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107380 | sp|P93324|CHOMT_MEDSA | 36.323 | 223 | 82 | 7 | 11 | 175 | 152 | 372 | 3.36e-33 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107380 | A0A072VH10 | 65.502 | 229 | 21 | 3 | 5 | 175 | 142 | 370 | 7.83e-90 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107360 | Msa0107380 | 0.846461 | 2.140916e-59 | -8.615850e-47 |
| Msa0107380 | Msa0153830 | 0.842244 | 2.910916e-58 | -8.615850e-47 |
| Msa0107380 | Msa0431690 | 0.806615 | 7.549045e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107380 | MtrunA17_Chr1g0163601 | 65.502 | 229 | 21 | 3 | 5 | 175 | 142 | 370 | 1.51e-93 | 276 |
| Msa0107380 | MtrunA17_Chr1g0163611 | 62.445 | 229 | 28 | 3 | 5 | 175 | 142 | 370 | 1.43e-89 | 266 |
| Msa0107380 | MtrunA17_Chr1g0163621 | 48.444 | 225 | 58 | 3 | 9 | 175 | 160 | 384 | 7.65e-62 | 196 |
| Msa0107380 | MtrunA17_Chr7g0218271 | 38.222 | 225 | 79 | 4 | 9 | 175 | 153 | 375 | 1.40e-44 | 150 |
| Msa0107380 | MtrunA17_Chr7g0218301 | 37.778 | 225 | 80 | 4 | 9 | 175 | 153 | 375 | 6.96e-43 | 146 |
| Msa0107380 | MtrunA17_Chr7g0218261 | 36.323 | 223 | 82 | 4 | 11 | 175 | 148 | 368 | 3.14e-38 | 134 |
| Msa0107380 | MtrunA17_Chr3g0085211 | 39.048 | 210 | 70 | 5 | 23 | 175 | 162 | 370 | 3.51e-38 | 134 |
| Msa0107380 | MtrunA17_Chr7g0218211 | 36.323 | 223 | 82 | 6 | 11 | 175 | 149 | 369 | 1.25e-37 | 132 |
| Msa0107380 | MtrunA17_Chr3g0085201 | 37.441 | 211 | 72 | 5 | 23 | 175 | 149 | 357 | 1.17e-36 | 129 |
| Msa0107380 | MtrunA17_Chr1g0200491 | 35.874 | 223 | 83 | 7 | 11 | 175 | 152 | 372 | 8.62e-34 | 122 |
| Msa0107380 | MtrunA17_Chr7g0218181 | 34.529 | 223 | 86 | 6 | 11 | 175 | 147 | 367 | 3.86e-32 | 118 |
| Msa0107380 | MtrunA17_Chr2g0307521 | 33.632 | 223 | 88 | 5 | 11 | 175 | 143 | 363 | 2.67e-31 | 115 |
| Msa0107380 | MtrunA17_Chr7g0218131 | 54.082 | 98 | 44 | 1 | 11 | 108 | 150 | 246 | 3.33e-30 | 113 |
| Msa0107380 | MtrunA17_Chr1g0170941 | 63.636 | 77 | 27 | 1 | 57 | 132 | 1 | 77 | 7.18e-29 | 102 |
| Msa0107380 | MtrunA17_Chr3g0128011 | 43.363 | 113 | 62 | 1 | 2 | 114 | 189 | 299 | 2.07e-26 | 103 |
| Msa0107380 | MtrunA17_Chr8g0345851 | 32.093 | 215 | 81 | 5 | 22 | 175 | 80 | 290 | 5.47e-26 | 100 |
| Msa0107380 | MtrunA17_Chr7g0276411 | 42.478 | 113 | 63 | 1 | 2 | 114 | 134 | 244 | 1.99e-24 | 97.4 |
| Msa0107380 | MtrunA17_Chr7g0276401 | 46.739 | 92 | 49 | 0 | 23 | 114 | 166 | 257 | 2.57e-24 | 97.4 |
| Msa0107380 | MtrunA17_Chr8g0367441 | 44.086 | 93 | 52 | 0 | 22 | 114 | 167 | 259 | 2.59e-24 | 97.4 |
| Msa0107380 | MtrunA17_Chr8g0367451 | 40.708 | 113 | 65 | 1 | 2 | 114 | 148 | 258 | 6.90e-24 | 96.3 |
| Msa0107380 | MtrunA17_Chr8g0367381 | 43.011 | 93 | 53 | 0 | 22 | 114 | 148 | 240 | 1.64e-23 | 94.7 |
| Msa0107380 | MtrunA17_Chr8g0367491 | 41.935 | 93 | 54 | 0 | 22 | 114 | 166 | 258 | 1.85e-22 | 92.4 |
| Msa0107380 | MtrunA17_Chr8g0367401 | 43.023 | 86 | 49 | 0 | 26 | 111 | 2 | 87 | 1.89e-22 | 87.8 |
| Msa0107380 | MtrunA17_Chr5g0448091 | 40.860 | 93 | 55 | 0 | 22 | 114 | 153 | 245 | 2.64e-22 | 91.7 |
| Msa0107380 | MtrunA17_Chr8g0367501 | 34.884 | 129 | 84 | 0 | 22 | 150 | 153 | 281 | 6.19e-22 | 91.3 |
| Msa0107380 | MtrunA17_Chr2g0314271 | 37.410 | 139 | 83 | 4 | 12 | 148 | 133 | 269 | 2.81e-20 | 86.3 |
| Msa0107380 | MtrunA17_Chr6g0482291 | 31.461 | 178 | 69 | 4 | 49 | 175 | 1 | 176 | 3.33e-20 | 82.8 |
| Msa0107380 | MtrunA17_Chr3g0130011 | 33.824 | 136 | 88 | 2 | 12 | 146 | 137 | 271 | 2.55e-19 | 83.6 |
| Msa0107380 | MtrunA17_Chr1g0170951 | 73.913 | 46 | 12 | 0 | 112 | 157 | 44 | 89 | 4.32e-19 | 77.8 |
| Msa0107380 | MtrunA17_Chr8g0367471 | 45.312 | 64 | 35 | 0 | 49 | 112 | 1 | 64 | 1.66e-15 | 68.6 |
| Msa0107380 | MtrunA17_Chr3g0121301 | 36.458 | 96 | 59 | 2 | 21 | 114 | 146 | 241 | 4.28e-15 | 71.6 |
| Msa0107380 | MtrunA17_Chr3g0130061 | 30.986 | 142 | 92 | 3 | 12 | 152 | 137 | 273 | 6.32e-15 | 71.2 |
| Msa0107380 | MtrunA17_Chr8g0367421 | 38.889 | 72 | 44 | 0 | 26 | 97 | 2 | 73 | 8.98e-15 | 67.4 |
| Msa0107380 | MtrunA17_Chr4g0022021 | 36.667 | 90 | 56 | 1 | 23 | 111 | 158 | 247 | 8.67e-14 | 68.2 |
| Msa0107380 | MtrunA17_Chr4g0021981 | 37.079 | 89 | 55 | 1 | 23 | 110 | 158 | 246 | 1.60e-13 | 67.4 |
| Msa0107380 | MtrunA17_Chr5g0432251 | 35.870 | 92 | 58 | 1 | 15 | 105 | 138 | 229 | 4.58e-12 | 63.2 |
| Msa0107380 | MtrunA17_Chr1g0188391 | 31.313 | 99 | 67 | 1 | 12 | 110 | 140 | 237 | 3.45e-11 | 60.5 |
| Msa0107380 | MtrunA17_Chr4g0040621 | 33.636 | 110 | 56 | 2 | 13 | 105 | 131 | 240 | 3.89e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107380 | AT5G54160.1 | 50.000 | 104 | 50 | 1 | 11 | 114 | 142 | 243 | 1.75e-30 | 114 |
| Msa0107380 | AT1G77520.1 | 41.667 | 108 | 61 | 1 | 11 | 118 | 161 | 266 | 3.18e-23 | 94.7 |
| Msa0107380 | AT1G51990.2 | 31.250 | 192 | 72 | 3 | 23 | 154 | 152 | 343 | 6.73e-23 | 94.0 |
| Msa0107380 | AT1G51990.1 | 31.250 | 192 | 72 | 3 | 23 | 154 | 152 | 343 | 6.94e-23 | 93.6 |
| Msa0107380 | AT5G37170.2 | 46.512 | 86 | 44 | 2 | 37 | 120 | 37 | 122 | 6.42e-19 | 80.9 |
| Msa0107380 | AT5G37170.1 | 46.512 | 86 | 44 | 2 | 37 | 120 | 137 | 222 | 5.58e-18 | 80.1 |
| Msa0107380 | AT3G53140.1 | 33.094 | 139 | 91 | 2 | 13 | 150 | 139 | 276 | 6.28e-18 | 80.1 |
| Msa0107380 | AT1G77530.2 | 40.541 | 111 | 64 | 1 | 2 | 112 | 152 | 260 | 7.49e-18 | 79.0 |
| Msa0107380 | AT1G77530.1 | 40.171 | 117 | 68 | 1 | 2 | 118 | 152 | 266 | 1.59e-17 | 79.0 |
| Msa0107380 | AT1G63140.3 | 43.434 | 99 | 54 | 1 | 11 | 109 | 181 | 277 | 1.81e-17 | 78.2 |
| Msa0107380 | AT1G63140.1 | 43.434 | 99 | 54 | 1 | 11 | 109 | 181 | 277 | 2.01e-17 | 78.2 |
| Msa0107380 | AT1G63140.2 | 43.434 | 99 | 54 | 1 | 11 | 109 | 161 | 257 | 3.09e-17 | 78.2 |
| Msa0107380 | AT1G63140.4 | 43.434 | 99 | 54 | 1 | 11 | 109 | 181 | 277 | 3.50e-17 | 78.2 |
| Msa0107380 | AT5G37170.3 | 50.000 | 74 | 35 | 2 | 49 | 120 | 1 | 74 | 4.65e-17 | 75.1 |
| Msa0107380 | AT5G53810.1 | 44.211 | 95 | 53 | 0 | 20 | 114 | 165 | 259 | 1.48e-16 | 76.3 |
| Msa0107380 | AT1G33030.1 | 26.872 | 227 | 102 | 6 | 9 | 175 | 128 | 350 | 1.62e-14 | 70.5 |
| Msa0107380 | AT1G62900.1 | 40.909 | 88 | 52 | 0 | 31 | 118 | 3 | 90 | 2.41e-14 | 68.2 |
| Msa0107380 | AT4G35150.1 | 36.957 | 92 | 57 | 1 | 26 | 116 | 109 | 200 | 3.83e-14 | 69.3 |
| Msa0107380 | AT1G33030.2 | 33.645 | 107 | 68 | 2 | 9 | 114 | 128 | 232 | 1.73e-12 | 63.9 |
| Msa0107380 | AT1G33030.3 | 33.645 | 107 | 68 | 2 | 9 | 114 | 128 | 232 | 1.90e-12 | 63.9 |
| Msa0107380 | AT4G35160.1 | 39.773 | 88 | 52 | 1 | 22 | 108 | 162 | 249 | 8.76e-12 | 62.8 |
Find 30 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCAATATCCTTCAATTA+AGG | 0.132120 | 1_3:-17659270 | Msa0107380:CDS |
| TGATGCAAAGGATGCAATTT+TGG | 0.144469 | 1_3:-17659510 | Msa0107380:CDS |
| ACTGCAAGCCACATGAAATT+TGG | 0.238630 | 1_3:+17657929 | None:intergenic |
| CTGGCCCACTAGAAATTAAA+AGG | 0.295011 | 1_3:-17659379 | Msa0107380:CDS |
| TAGACATATTGCTAGGGTTT+GGG | 0.337888 | 1_3:+17658051 | None:intergenic |
| CAAATCCTTTATAAAATTGA+AGG | 0.338328 | 1_3:+17659354 | None:intergenic |
| ATTCAATTCTTTGTTTGTCT+TGG | 0.352712 | 1_3:+17659430 | None:intergenic |
| TCTCAATATCCTTCAATTAA+GGG | 0.372954 | 1_3:-17659269 | Msa0107380:CDS |
| AACAAAGCAATGGCTCATTC+TGG | 0.385790 | 1_3:-17659398 | Msa0107380:CDS |
| GTGATGTCCCATTGATACTT+TGG | 0.394783 | 1_3:+17659465 | None:intergenic |
| AAATTAATTCCCTTAATTGA+AGG | 0.411591 | 1_3:+17659260 | None:intergenic |
| AATCCTTTCCAAAGTATCAA+TGG | 0.413947 | 1_3:-17659473 | Msa0107380:CDS |
| TTAGACATATTGCTAGGGTT+TGG | 0.423715 | 1_3:+17658050 | None:intergenic |
| AGTGATGCCTCAGCCTTGTC+TGG | 0.429790 | 1_3:-17657909 | Msa0107380:CDS |
| ATCCTTTCCAAAGTATCAAT+GGG | 0.475230 | 1_3:-17659472 | Msa0107380:CDS |
| GTCTCAACGTTGGTTGATGT+TGG | 0.478000 | 1_3:-17659326 | Msa0107380:CDS |
| GCATGCTTAGACATATTGCT+AGG | 0.482902 | 1_3:+17658044 | None:intergenic |
| GTTGATGTTGGAGGTGGAGT+AGG | 0.491159 | 1_3:-17659314 | Msa0107380:CDS |
| CAAAATGCACCTTCTCATCC+AGG | 0.503022 | 1_3:-17659218 | Msa0107380:intron |
| CTCAGCCTTGTCTGGAGTGA+TGG | 0.508490 | 1_3:-17657901 | Msa0107380:CDS |
| GAGAACTTATGTAAGAGAGC+TGG | 0.513125 | 1_3:-17657957 | Msa0107380:CDS |
| CATGCTTAGACATATTGCTA+GGG | 0.550831 | 1_3:+17658045 | None:intergenic |
| ACGTTGGTTGATGTTGGAGG+TGG | 0.561128 | 1_3:-17659320 | Msa0107380:CDS |
| CTCTTGCAGGGGTGATGCAA+AGG | 0.569383 | 1_3:-17659522 | Msa0107380:CDS |
| TCAACGTTGGTTGATGTTGG+AGG | 0.571903 | 1_3:-17659323 | Msa0107380:CDS |
| GTCCCATTGATACTTTGGAA+AGG | 0.579169 | 1_3:+17659470 | None:intergenic |
| TGATACTTGTAACAAAGCAA+TGG | 0.601012 | 1_3:-17659408 | Msa0107380:CDS |
| AAATTCCATCACTCCAGACA+AGG | 0.633094 | 1_3:+17657896 | None:intergenic |
| CATCACTCCAGACAAGGCTG+AGG | 0.653766 | 1_3:+17657902 | None:intergenic |
| ATTTGAAGGAGTCTCAACGT+TGG | 0.664672 | 1_3:-17659336 | Msa0107380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATT+TGG | - | chr1_3:17658327-17658346 | Msa0107380:intron | 0.0% |
| !! | TATATATATATATATATATT+TGG | - | chr1_3:17658327-17658346 | Msa0107380:intron | 0.0% |
| !!! | CATAATTTAAAATATAGTAA+AGG | + | chr1_3:17658354-17658373 | None:intergenic | 10.0% |
| !!! | TACTTTTTTATTTTTATTTG+TGG | + | chr1_3:17658459-17658478 | None:intergenic | 10.0% |
| !!! | AAAAAAGTATGAAATTTTTA+AGG | - | chr1_3:17658470-17658489 | Msa0107380:intron | 10.0% |
| !!! | ATAAAAGTATGAAATTTTTA+AGG | - | chr1_3:17658541-17658560 | Msa0107380:intron | 10.0% |
| !!! | AAAAAAGTATGAAATTTTTA+AGG | - | chr1_3:17658470-17658489 | Msa0107380:intron | 10.0% |
| !! | AAAGAAAAATAAAATGATTA+GGG | + | chr1_3:17659225-17659244 | None:intergenic | 10.0% |
| !! | TAAAGAAAAATAAAATGATT+AGG | + | chr1_3:17659226-17659245 | None:intergenic | 10.0% |
| !!! | CATAATTTAAAATATAGTAA+AGG | + | chr1_3:17658354-17658373 | None:intergenic | 10.0% |
| !!! | TACTTTTTTATTTTTATTTG+TGG | + | chr1_3:17658459-17658478 | None:intergenic | 10.0% |
| !!! | AAAAAAGTATGAAATTTTTA+AGG | - | chr1_3:17658470-17658489 | Msa0107380:intron | 10.0% |
| !!! | ATAAAAGTATGAAATTTTTA+AGG | - | chr1_3:17658541-17658560 | Msa0107380:intron | 10.0% |
| !!! | AAAAAAGTATGAAATTTTTA+AGG | - | chr1_3:17658470-17658489 | Msa0107380:intron | 10.0% |
| !! | AAAGAAAAATAAAATGATTA+GGG | + | chr1_3:17659225-17659244 | None:intergenic | 10.0% |
| !! | TAAAGAAAAATAAAATGATT+AGG | + | chr1_3:17659226-17659245 | None:intergenic | 10.0% |
| !! | TCTCGTTATTATTATAATAT+TGG | + | chr1_3:17658262-17658281 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTTTATTTGTGG+TGG | + | chr1_3:17658456-17658475 | None:intergenic | 15.0% |
| !!! | CTAACAATAATTATTGTTTT+TGG | + | chr1_3:17658932-17658951 | None:intergenic | 15.0% |
| !! | TAACAATGTATTTATAAATG+AGG | - | chr1_3:17658976-17658995 | Msa0107380:intron | 15.0% |
| !! | TCTCGTTATTATTATAATAT+TGG | + | chr1_3:17658262-17658281 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTTTATTTGTGG+TGG | + | chr1_3:17658456-17658475 | None:intergenic | 15.0% |
| !!! | CTAACAATAATTATTGTTTT+TGG | + | chr1_3:17658932-17658951 | None:intergenic | 15.0% |
| !! | TAACAATGTATTTATAAATG+AGG | - | chr1_3:17658976-17658995 | Msa0107380:intron | 15.0% |
| !! | CAAATCCTTTATAAAATTGA+AGG | + | chr1_3:17658069-17658088 | None:intergenic | 20.0% |
| !!! | CAATTTTATAAAGGATTTGA+AGG | - | chr1_3:17658070-17658089 | Msa0107380:intron | 20.0% |
| !! | AAATTAATTCCCTTAATTGA+AGG | + | chr1_3:17658163-17658182 | None:intergenic | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_3:17658496-17658515 | None:intergenic | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_3:17658496-17658515 | None:intergenic | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_3:17658496-17658515 | None:intergenic | 20.0% |
| !!! | ACTTGTTTACTATTTTTCAA+AGG | - | chr1_3:17658684-17658703 | Msa0107380:intron | 20.0% |
| !! | AAATATTCCATTTATTCCTT+AGG | + | chr1_3:17658901-17658920 | None:intergenic | 20.0% |
| !!! | AATGATTAGGGATTTTTTTT+AGG | + | chr1_3:17659213-17659232 | None:intergenic | 20.0% |
| !! | CAAATCCTTTATAAAATTGA+AGG | + | chr1_3:17658069-17658088 | None:intergenic | 20.0% |
| !!! | CAATTTTATAAAGGATTTGA+AGG | - | chr1_3:17658070-17658089 | Msa0107380:intron | 20.0% |
| !! | AAATTAATTCCCTTAATTGA+AGG | + | chr1_3:17658163-17658182 | None:intergenic | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_3:17658496-17658515 | None:intergenic | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_3:17658496-17658515 | None:intergenic | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_3:17658496-17658515 | None:intergenic | 20.0% |
| !!! | ACTTGTTTACTATTTTTCAA+AGG | - | chr1_3:17658684-17658703 | Msa0107380:intron | 20.0% |
| !! | AAATATTCCATTTATTCCTT+AGG | + | chr1_3:17658901-17658920 | None:intergenic | 20.0% |
| !!! | AATGATTAGGGATTTTTTTT+AGG | + | chr1_3:17659213-17659232 | None:intergenic | 20.0% |
| !! | ATTCAATTCTTTGTTTGTCT+TGG | + | chr1_3:17657993-17658012 | None:intergenic | 25.0% |
| !! | AGGATCCTTCAATTTTATAA+AGG | - | chr1_3:17658061-17658080 | Msa0107380:intron | 25.0% |
| !! | TTGAGAGATAATGAGTTTTA+GGG | + | chr1_3:17658137-17658156 | None:intergenic | 25.0% |
| !! | ATTGAGAGATAATGAGTTTT+AGG | + | chr1_3:17658138-17658157 | None:intergenic | 25.0% |
| ! | TCTCAATATCCTTCAATTAA+GGG | - | chr1_3:17658151-17658170 | Msa0107380:intron | 25.0% |
| !! | AGAGATTGATATATTTTACC+TGG | + | chr1_3:17658223-17658242 | None:intergenic | 25.0% |
| ! | TACAATGCATAAAATATGCA+AGG | - | chr1_3:17658411-17658430 | Msa0107380:intron | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_3:17658497-17658516 | None:intergenic | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_3:17658497-17658516 | None:intergenic | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_3:17658497-17658516 | None:intergenic | 25.0% |
| ! | ACAAACACAACAAAAGTTTA+TGG | + | chr1_3:17659071-17659090 | None:intergenic | 25.0% |
| !!! | TAAACTTTTGTTGTGTTTGT+AGG | - | chr1_3:17659071-17659090 | Msa0107380:intron | 25.0% |
| !!! | AAACTTTTGTTGTGTTTGTA+GGG | - | chr1_3:17659072-17659091 | Msa0107380:intron | 25.0% |
| ! | TTTGGATTATATAATTCCAG+AGG | - | chr1_3:17659345-17659364 | Msa0107380:CDS | 25.0% |
| !! | ATTCAATTCTTTGTTTGTCT+TGG | + | chr1_3:17657993-17658012 | None:intergenic | 25.0% |
| !! | AGGATCCTTCAATTTTATAA+AGG | - | chr1_3:17658061-17658080 | Msa0107380:intron | 25.0% |
| !! | TTGAGAGATAATGAGTTTTA+GGG | + | chr1_3:17658137-17658156 | None:intergenic | 25.0% |
| !! | ATTGAGAGATAATGAGTTTT+AGG | + | chr1_3:17658138-17658157 | None:intergenic | 25.0% |
| ! | TCTCAATATCCTTCAATTAA+GGG | - | chr1_3:17658151-17658170 | Msa0107380:intron | 25.0% |
| !! | AGAGATTGATATATTTTACC+TGG | + | chr1_3:17658223-17658242 | None:intergenic | 25.0% |
| ! | TACAATGCATAAAATATGCA+AGG | - | chr1_3:17658411-17658430 | Msa0107380:intron | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_3:17658497-17658516 | None:intergenic | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_3:17658497-17658516 | None:intergenic | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_3:17658497-17658516 | None:intergenic | 25.0% |
| ! | ACAAACACAACAAAAGTTTA+TGG | + | chr1_3:17659071-17659090 | None:intergenic | 25.0% |
| !!! | TAAACTTTTGTTGTGTTTGT+AGG | - | chr1_3:17659071-17659090 | Msa0107380:intron | 25.0% |
| !!! | AAACTTTTGTTGTGTTTGTA+GGG | - | chr1_3:17659072-17659091 | Msa0107380:intron | 25.0% |
| ! | TTTGGATTATATAATTCCAG+AGG | - | chr1_3:17659345-17659364 | Msa0107380:CDS | 25.0% |
| ! | AATCCTTTCCAAAGTATCAA+TGG | - | chr1_3:17657947-17657966 | Msa0107380:CDS | 30.0% |
| ! | ATCCTTTCCAAAGTATCAAT+GGG | - | chr1_3:17657948-17657967 | Msa0107380:CDS | 30.0% |
| TGATACTTGTAACAAAGCAA+TGG | - | chr1_3:17658012-17658031 | Msa0107380:CDS | 30.0% | |
| !!! | GGATCCTTTTAATTTCTAGT+GGG | + | chr1_3:17658048-17658067 | None:intergenic | 30.0% |
| !!! | AGGATCCTTTTAATTTCTAG+TGG | + | chr1_3:17658049-17658068 | None:intergenic | 30.0% |
| CTCTCAATATCCTTCAATTA+AGG | - | chr1_3:17658150-17658169 | Msa0107380:intron | 30.0% | |
| ! | TATATTTTACCTGGATGAGA+AGG | + | chr1_3:17658214-17658233 | None:intergenic | 30.0% |
| !! | TATTTTTATTTGTGGTGGCT+GGG | + | chr1_3:17658451-17658470 | None:intergenic | 30.0% |
| !!! | TTATTTTTATTTGTGGTGGC+TGG | + | chr1_3:17658452-17658471 | None:intergenic | 30.0% |
| AAATAAACCAACAATGCCTA+AGG | - | chr1_3:17658882-17658901 | Msa0107380:intron | 30.0% | |
| ! | ATTTATTCCTTAGGCATTGT+TGG | + | chr1_3:17658892-17658911 | None:intergenic | 30.0% |
| AACAATGCCTAAGGAATAAA+TGG | - | chr1_3:17658891-17658910 | Msa0107380:intron | 30.0% | |
| CTAAAAAACCTACTTGTGAT+CGG | + | chr1_3:17659012-17659031 | None:intergenic | 30.0% | |
| TAGACCAACCTTTAGTAAAA+TGG | + | chr1_3:17659147-17659166 | None:intergenic | 30.0% | |
| !!! | CTCATGTTTTTAGTAACAAC+TGG | - | chr1_3:17659415-17659434 | Msa0107380:CDS | 30.0% |
| !!! | GTTTTTAGTAACAACTGGAA+AGG | - | chr1_3:17659420-17659439 | Msa0107380:CDS | 30.0% |
| ! | TGGATTTTCCAAATTTCATG+TGG | - | chr1_3:17659483-17659502 | Msa0107380:CDS | 30.0% |
| ! | AATCCTTTCCAAAGTATCAA+TGG | - | chr1_3:17657947-17657966 | Msa0107380:CDS | 30.0% |
| ! | ATCCTTTCCAAAGTATCAAT+GGG | - | chr1_3:17657948-17657967 | Msa0107380:CDS | 30.0% |
| TGATACTTGTAACAAAGCAA+TGG | - | chr1_3:17658012-17658031 | Msa0107380:CDS | 30.0% | |
| !!! | GGATCCTTTTAATTTCTAGT+GGG | + | chr1_3:17658048-17658067 | None:intergenic | 30.0% |
| !!! | AGGATCCTTTTAATTTCTAG+TGG | + | chr1_3:17658049-17658068 | None:intergenic | 30.0% |
| CTCTCAATATCCTTCAATTA+AGG | - | chr1_3:17658150-17658169 | Msa0107380:intron | 30.0% | |
| ! | TATATTTTACCTGGATGAGA+AGG | + | chr1_3:17658214-17658233 | None:intergenic | 30.0% |
| !! | TATTTTTATTTGTGGTGGCT+GGG | + | chr1_3:17658451-17658470 | None:intergenic | 30.0% |
| !!! | TTATTTTTATTTGTGGTGGC+TGG | + | chr1_3:17658452-17658471 | None:intergenic | 30.0% |
| AAATAAACCAACAATGCCTA+AGG | - | chr1_3:17658882-17658901 | Msa0107380:intron | 30.0% | |
| ! | ATTTATTCCTTAGGCATTGT+TGG | + | chr1_3:17658892-17658911 | None:intergenic | 30.0% |
| AACAATGCCTAAGGAATAAA+TGG | - | chr1_3:17658891-17658910 | Msa0107380:intron | 30.0% | |
| CTAAAAAACCTACTTGTGAT+CGG | + | chr1_3:17659012-17659031 | None:intergenic | 30.0% | |
| TAGACCAACCTTTAGTAAAA+TGG | + | chr1_3:17659147-17659166 | None:intergenic | 30.0% | |
| !!! | CTCATGTTTTTAGTAACAAC+TGG | - | chr1_3:17659415-17659434 | Msa0107380:CDS | 30.0% |
| !!! | GTTTTTAGTAACAACTGGAA+AGG | - | chr1_3:17659420-17659439 | Msa0107380:CDS | 30.0% |
| ! | TGGATTTTCCAAATTTCATG+TGG | - | chr1_3:17659483-17659502 | Msa0107380:CDS | 30.0% |
| ! | TGATGCAAAGGATGCAATTT+TGG | - | chr1_3:17657910-17657929 | Msa0107380:CDS | 35.0% |
| ! | GATGCAAAGGATGCAATTTT+GGG | - | chr1_3:17657911-17657930 | Msa0107380:CDS | 35.0% |
| ! | TGGAAAGGATTTTTGACATC+AGG | + | chr1_3:17657938-17657957 | None:intergenic | 35.0% |
| TGCATAAAATATGCAAGGTC+CGG | - | chr1_3:17658416-17658435 | Msa0107380:intron | 35.0% | |
| !! | ATTTTTATTTGTGGTGGCTG+GGG | + | chr1_3:17658450-17658469 | None:intergenic | 35.0% |
| AATTCTACGAAATCGTGGTT+GGG | + | chr1_3:17659047-17659066 | None:intergenic | 35.0% | |
| TAATTCTACGAAATCGTGGT+TGG | + | chr1_3:17659048-17659067 | None:intergenic | 35.0% | |
| ATGGTAATTCTACGAAATCG+TGG | + | chr1_3:17659052-17659071 | None:intergenic | 35.0% | |
| !! | ATGTTTGAAAGTGTTCCAAC+TGG | - | chr1_3:17659116-17659135 | Msa0107380:intron | 35.0% |
| !!! | TGGTGATGCCATTTTACTAA+AGG | - | chr1_3:17659136-17659155 | Msa0107380:intron | 35.0% |
| !!! | GATGCCATTTTACTAAAGGT+TGG | - | chr1_3:17659140-17659159 | Msa0107380:intron | 35.0% |
| TTCAGCTTGTATGTCATAAC+TGG | - | chr1_3:17659251-17659270 | Msa0107380:CDS | 35.0% | |
| TCAGCTTGTATGTCATAACT+GGG | - | chr1_3:17659252-17659271 | Msa0107380:CDS | 35.0% | |
| CACAAAGCTTTACCAAAACA+TGG | - | chr1_3:17659310-17659329 | Msa0107380:CDS | 35.0% | |
| AGCTTTACCAAAACATGGAA+AGG | - | chr1_3:17659315-17659334 | Msa0107380:CDS | 35.0% | |
| ! | ACAATCACCTTTCCATGTTT+TGG | + | chr1_3:17659325-17659344 | None:intergenic | 35.0% |
| ! | ACATGGAAAGGTGATTGTTT+TGG | - | chr1_3:17659327-17659346 | Msa0107380:CDS | 35.0% |
| TAGACATATTGCTAGGGTTT+GGG | + | chr1_3:17659372-17659391 | None:intergenic | 35.0% | |
| TTAGACATATTGCTAGGGTT+TGG | + | chr1_3:17659373-17659392 | None:intergenic | 35.0% | |
| CATGCTTAGACATATTGCTA+GGG | + | chr1_3:17659378-17659397 | None:intergenic | 35.0% | |
| ! | TGATGCAAAGGATGCAATTT+TGG | - | chr1_3:17657910-17657929 | Msa0107380:CDS | 35.0% |
| ! | GATGCAAAGGATGCAATTTT+GGG | - | chr1_3:17657911-17657930 | Msa0107380:CDS | 35.0% |
| ! | TGGAAAGGATTTTTGACATC+AGG | + | chr1_3:17657938-17657957 | None:intergenic | 35.0% |
| TGCATAAAATATGCAAGGTC+CGG | - | chr1_3:17658416-17658435 | Msa0107380:intron | 35.0% | |
| !! | ATTTTTATTTGTGGTGGCTG+GGG | + | chr1_3:17658450-17658469 | None:intergenic | 35.0% |
| AATTCTACGAAATCGTGGTT+GGG | + | chr1_3:17659047-17659066 | None:intergenic | 35.0% | |
| TAATTCTACGAAATCGTGGT+TGG | + | chr1_3:17659048-17659067 | None:intergenic | 35.0% | |
| ATGGTAATTCTACGAAATCG+TGG | + | chr1_3:17659052-17659071 | None:intergenic | 35.0% | |
| !! | ATGTTTGAAAGTGTTCCAAC+TGG | - | chr1_3:17659116-17659135 | Msa0107380:intron | 35.0% |
| !!! | TGGTGATGCCATTTTACTAA+AGG | - | chr1_3:17659136-17659155 | Msa0107380:intron | 35.0% |
| !!! | GATGCCATTTTACTAAAGGT+TGG | - | chr1_3:17659140-17659159 | Msa0107380:intron | 35.0% |
| TTCAGCTTGTATGTCATAAC+TGG | - | chr1_3:17659251-17659270 | Msa0107380:CDS | 35.0% | |
| TCAGCTTGTATGTCATAACT+GGG | - | chr1_3:17659252-17659271 | Msa0107380:CDS | 35.0% | |
| CACAAAGCTTTACCAAAACA+TGG | - | chr1_3:17659310-17659329 | Msa0107380:CDS | 35.0% | |
| AGCTTTACCAAAACATGGAA+AGG | - | chr1_3:17659315-17659334 | Msa0107380:CDS | 35.0% | |
| ! | ACAATCACCTTTCCATGTTT+TGG | + | chr1_3:17659325-17659344 | None:intergenic | 35.0% |
| ! | ACATGGAAAGGTGATTGTTT+TGG | - | chr1_3:17659327-17659346 | Msa0107380:CDS | 35.0% |
| TAGACATATTGCTAGGGTTT+GGG | + | chr1_3:17659372-17659391 | None:intergenic | 35.0% | |
| TTAGACATATTGCTAGGGTT+TGG | + | chr1_3:17659373-17659392 | None:intergenic | 35.0% | |
| CATGCTTAGACATATTGCTA+GGG | + | chr1_3:17659378-17659397 | None:intergenic | 35.0% | |
| ! | ATGATTTTGTGCTCTTGCAG+GGG | - | chr1_3:17657887-17657906 | Msa0107380:CDS | 40.0% |
| ! | GTCCCATTGATACTTTGGAA+AGG | + | chr1_3:17657953-17657972 | None:intergenic | 40.0% |
| GTGATGTCCCATTGATACTT+TGG | + | chr1_3:17657958-17657977 | None:intergenic | 40.0% | |
| AACAAAGCAATGGCTCATTC+TGG | - | chr1_3:17658022-17658041 | Msa0107380:CDS | 40.0% | |
| CTGGCCCACTAGAAATTAAA+AGG | - | chr1_3:17658041-17658060 | Msa0107380:CDS | 40.0% | |
| ATTTGAAGGAGTCTCAACGT+TGG | - | chr1_3:17658084-17658103 | Msa0107380:intron | 40.0% | |
| ! | GGTGCATTTTGAACAACTTG+TGG | + | chr1_3:17658193-17658212 | None:intergenic | 40.0% |
| GCATAAAATATGCAAGGTCC+GGG | - | chr1_3:17658417-17658436 | Msa0107380:intron | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr1_3:17658418-17658437 | Msa0107380:intron | 40.0% | |
| AATCTTCACCGATCACAAGT+AGG | - | chr1_3:17659001-17659020 | Msa0107380:intron | 40.0% | |
| !! | TTTTGTTGTGTTTGTAGGGC+TGG | - | chr1_3:17659076-17659095 | Msa0107380:intron | 40.0% |
| AGTAAAATGGCATCACCAGT+TGG | + | chr1_3:17659134-17659153 | None:intergenic | 40.0% | |
| GCATGCTTAGACATATTGCT+AGG | + | chr1_3:17659379-17659398 | None:intergenic | 40.0% | |
| GAGAACTTATGTAAGAGAGC+TGG | - | chr1_3:17659463-17659482 | Msa0107380:CDS | 40.0% | |
| ACTGCAAGCCACATGAAATT+TGG | + | chr1_3:17659494-17659513 | None:intergenic | 40.0% | |
| AAATTCCATCACTCCAGACA+AGG | + | chr1_3:17659527-17659546 | None:intergenic | 40.0% | |
| ! | ATGATTTTGTGCTCTTGCAG+GGG | - | chr1_3:17657887-17657906 | Msa0107380:CDS | 40.0% |
| ! | GTCCCATTGATACTTTGGAA+AGG | + | chr1_3:17657953-17657972 | None:intergenic | 40.0% |
| GTGATGTCCCATTGATACTT+TGG | + | chr1_3:17657958-17657977 | None:intergenic | 40.0% | |
| AACAAAGCAATGGCTCATTC+TGG | - | chr1_3:17658022-17658041 | Msa0107380:CDS | 40.0% | |
| CTGGCCCACTAGAAATTAAA+AGG | - | chr1_3:17658041-17658060 | Msa0107380:CDS | 40.0% | |
| ATTTGAAGGAGTCTCAACGT+TGG | - | chr1_3:17658084-17658103 | Msa0107380:intron | 40.0% | |
| ! | GGTGCATTTTGAACAACTTG+TGG | + | chr1_3:17658193-17658212 | None:intergenic | 40.0% |
| GCATAAAATATGCAAGGTCC+GGG | - | chr1_3:17658417-17658436 | Msa0107380:intron | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr1_3:17658418-17658437 | Msa0107380:intron | 40.0% | |
| AATCTTCACCGATCACAAGT+AGG | - | chr1_3:17659001-17659020 | Msa0107380:intron | 40.0% | |
| !! | TTTTGTTGTGTTTGTAGGGC+TGG | - | chr1_3:17659076-17659095 | Msa0107380:intron | 40.0% |
| AGTAAAATGGCATCACCAGT+TGG | + | chr1_3:17659134-17659153 | None:intergenic | 40.0% | |
| GCATGCTTAGACATATTGCT+AGG | + | chr1_3:17659379-17659398 | None:intergenic | 40.0% | |
| GAGAACTTATGTAAGAGAGC+TGG | - | chr1_3:17659463-17659482 | Msa0107380:CDS | 40.0% | |
| ACTGCAAGCCACATGAAATT+TGG | + | chr1_3:17659494-17659513 | None:intergenic | 40.0% | |
| AAATTCCATCACTCCAGACA+AGG | + | chr1_3:17659527-17659546 | None:intergenic | 40.0% | |
| ! | GTCTCAACGTTGGTTGATGT+TGG | - | chr1_3:17658094-17658113 | Msa0107380:intron | 45.0% |
| ! | TCAACGTTGGTTGATGTTGG+AGG | - | chr1_3:17658097-17658116 | Msa0107380:intron | 45.0% |
| CAAAATGCACCTTCTCATCC+AGG | - | chr1_3:17658202-17658221 | Msa0107380:intron | 45.0% | |
| ! | GTCTCAACGTTGGTTGATGT+TGG | - | chr1_3:17658094-17658113 | Msa0107380:intron | 45.0% |
| ! | TCAACGTTGGTTGATGTTGG+AGG | - | chr1_3:17658097-17658116 | Msa0107380:intron | 45.0% |
| CAAAATGCACCTTCTCATCC+AGG | - | chr1_3:17658202-17658221 | Msa0107380:intron | 45.0% | |
| !!! | ATAATTTAAAATATAGTAAA+GGG | + | chr1_3:17658353-17658372 | None:intergenic | 5.0% |
| !! | AATAAATAATTTAAACAATT+TGG | - | chr1_3:17659182-17659201 | Msa0107380:intron | 5.0% |
| !!! | ATAATTTAAAATATAGTAAA+GGG | + | chr1_3:17658353-17658372 | None:intergenic | 5.0% |
| !! | AATAAATAATTTAAACAATT+TGG | - | chr1_3:17659182-17659201 | Msa0107380:intron | 5.0% |
| ! | ACGTTGGTTGATGTTGGAGG+TGG | - | chr1_3:17658100-17658119 | Msa0107380:intron | 50.0% |
| GTTGATGTTGGAGGTGGAGT+AGG | - | chr1_3:17658106-17658125 | Msa0107380:intron | 50.0% | |
| CATCGTGAGCTTAGCTCAGT+TGG | - | chr1_3:17658384-17658403 | Msa0107380:intron | 50.0% | |
| TTTGTAGGGCTGGAGCATGT+TGG | - | chr1_3:17659086-17659105 | Msa0107380:intron | 50.0% | |
| ! | ACGTTGGTTGATGTTGGAGG+TGG | - | chr1_3:17658100-17658119 | Msa0107380:intron | 50.0% |
| GTTGATGTTGGAGGTGGAGT+AGG | - | chr1_3:17658106-17658125 | Msa0107380:intron | 50.0% | |
| CATCGTGAGCTTAGCTCAGT+TGG | - | chr1_3:17658384-17658403 | Msa0107380:intron | 50.0% | |
| TTTGTAGGGCTGGAGCATGT+TGG | - | chr1_3:17659086-17659105 | Msa0107380:intron | 50.0% | |
| CTCTTGCAGGGGTGATGCAA+AGG | - | chr1_3:17657898-17657917 | Msa0107380:CDS | 55.0% | |
| ! | TTGCTAGGGTTTGGGACCTC+TGG | + | chr1_3:17659364-17659383 | None:intergenic | 55.0% |
| ! | AGTGATGCCTCAGCCTTGTC+TGG | - | chr1_3:17659511-17659530 | Msa0107380:CDS | 55.0% |
| CATCACTCCAGACAAGGCTG+AGG | + | chr1_3:17659521-17659540 | None:intergenic | 55.0% | |
| ! | CTCAGCCTTGTCTGGAGTGA+TGG | - | chr1_3:17659519-17659538 | Msa0107380:CDS | 55.0% |
| CTCTTGCAGGGGTGATGCAA+AGG | - | chr1_3:17657898-17657917 | Msa0107380:CDS | 55.0% | |
| ! | TTGCTAGGGTTTGGGACCTC+TGG | + | chr1_3:17659364-17659383 | None:intergenic | 55.0% |
| ! | AGTGATGCCTCAGCCTTGTC+TGG | - | chr1_3:17659511-17659530 | Msa0107380:CDS | 55.0% |
| CATCACTCCAGACAAGGCTG+AGG | + | chr1_3:17659521-17659540 | None:intergenic | 55.0% | |
| ! | CTCAGCCTTGTCTGGAGTGA+TGG | - | chr1_3:17659519-17659538 | Msa0107380:CDS | 55.0% |
| GTAGGGCTGGAGCATGTTGG+AGG | - | chr1_3:17659089-17659108 | Msa0107380:intron | 60.0% | |
| GTAGGGCTGGAGCATGTTGG+AGG | - | chr1_3:17659089-17659108 | Msa0107380:intron | 60.0% | |
| GGTGGCTGGGGTTTGAACCC+CGG | + | chr1_3:17658438-17658457 | None:intergenic | 65.0% | |
| GGTGGCTGGGGTTTGAACCC+CGG | + | chr1_3:17658438-17658457 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17657887 | 17659555 | 17657887 | ID=Msa0107380;Name=Msa0107380 |
| chr1_3 | mRNA | 17657887 | 17659555 | 17657887 | ID=Msa0107380-mRNA-1;Parent=Msa0107380;Name=Msa0107380-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|175 |
| chr1_3 | exon | 17659219 | 17659555 | 17659219 | ID=Msa0107380-mRNA-1:exon:6643;Parent=Msa0107380-mRNA-1 |
| chr1_3 | exon | 17657887 | 17658077 | 17657887 | ID=Msa0107380-mRNA-1:exon:6642;Parent=Msa0107380-mRNA-1 |
| chr1_3 | CDS | 17659219 | 17659555 | 17659219 | ID=Msa0107380-mRNA-1:cds;Parent=Msa0107380-mRNA-1 |
| chr1_3 | CDS | 17657887 | 17658077 | 17657887 | ID=Msa0107380-mRNA-1:cds;Parent=Msa0107380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
