Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107990 | sp|Q9FMX7|NIC2_ARATH | 65.464 | 194 | 65 | 1 | 4 | 195 | 2 | 195 | 3.51e-92 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107990 | G7IBE1 | 93.651 | 189 | 12 | 0 | 8 | 196 | 13 | 201 | 1.73e-131 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107990 | Msa0170320 | 0.807581 | 4.714262e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107990 | MtrunA17_Chr1g0164691 | 93.651 | 189 | 12 | 0 | 8 | 196 | 13 | 201 | 3.34e-135 | 376 |
| Msa0107990 | MtrunA17_Chr1g0164681 | 93.651 | 189 | 12 | 0 | 8 | 196 | 13 | 201 | 2.16e-133 | 372 |
| Msa0107990 | MtrunA17_Chr1g0164701 | 67.368 | 95 | 24 | 1 | 101 | 195 | 26 | 113 | 8.65e-39 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107990 | AT5G23230.1 | 65.464 | 194 | 65 | 1 | 4 | 195 | 2 | 195 | 3.57e-93 | 270 |
| Msa0107990 | AT5G23220.1 | 61.856 | 194 | 72 | 1 | 4 | 195 | 2 | 195 | 9.68e-87 | 254 |
Find 55 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCAAATGTTTGAGGATT+TGG | 0.210862 | 1_3:+19195445 | None:intergenic |
| GGCCTTTATTAGAGGCTTTA+GGG | 0.250422 | 1_3:-19191859 | Msa0107990:CDS |
| AGGCCTTTATTAGAGGCTTT+AGG | 0.288057 | 1_3:-19191860 | Msa0107990:CDS |
| GCGAGTGAGGCCTTTATTAG+AGG | 0.335050 | 1_3:-19191867 | Msa0107990:CDS |
| GTGCAAATGTTTGAGGATTT+GGG | 0.337485 | 1_3:+19195446 | None:intergenic |
| CGCATTTAGGAACACGGGTT+TGG | 0.362583 | 1_3:-19191967 | Msa0107990:CDS |
| GGCTGAGCTCATGACGGCTT+TGG | 0.364929 | 1_3:-19195227 | Msa0107990:CDS |
| TATAATCATAAACTAGAAAC+TGG | 0.375976 | 1_3:+19191612 | None:intergenic |
| ATGCTTGAGGAGTGGTGGTT+TGG | 0.379113 | 1_3:-19195277 | Msa0107990:CDS |
| CACCCTAAAGCCTCTAATAA+AGG | 0.383650 | 1_3:+19191857 | None:intergenic |
| TCCTCAAACATTTGCACTGT+TGG | 0.405263 | 1_3:-19195440 | Msa0107990:CDS |
| GTGTTGAGATTGGCAAGAAT+TGG | 0.414803 | 1_3:+19195379 | None:intergenic |
| TGTTGAGATTGGCAAGAATT+GGG | 0.417112 | 1_3:+19195380 | None:intergenic |
| CTTACTTTCTTGATTGTCAC+AGG | 0.424196 | 1_3:-19191755 | Msa0107990:CDS |
| AGAGTACATACAGCGCATTT+AGG | 0.427990 | 1_3:-19191980 | Msa0107990:CDS |
| ACCAACAGTGCAAATGTTTG+AGG | 0.430016 | 1_3:+19195439 | None:intergenic |
| CACAAGTCTCCTTCCGATCA+TGG | 0.447872 | 1_3:-19195301 | Msa0107990:CDS |
| TGCACCAACCTTAAAATACT+TGG | 0.474115 | 1_3:+19196307 | None:intergenic |
| CGTCATGAGCTCAGCCTCTA+CGG | 0.481871 | 1_3:+19195234 | None:intergenic |
| GAAGAGAAGCTGAAAGAGAT+GGG | 0.482671 | 1_3:-19191945 | Msa0107990:CDS |
| GGAAGAGAAGCTGAAAGAGA+TGG | 0.493039 | 1_3:-19191946 | Msa0107990:CDS |
| CGGAAGGAGACTTGTGGCAG+TGG | 0.494044 | 1_3:+19195308 | None:intergenic |
| GGCAAGAATTGGGGCTGCCA+TGG | 0.521882 | 1_3:+19195390 | None:intergenic |
| AGTGATAGTGGTGTTGAGAT+TGG | 0.525927 | 1_3:+19195369 | None:intergenic |
| GCAGAATTACTTCTCTTCCA+TGG | 0.527773 | 1_3:-19195407 | Msa0107990:CDS |
| CTCCTCAAGCATACCATGAT+CGG | 0.529208 | 1_3:+19195288 | None:intergenic |
| GAAAGAGATGGGTGTGGACG+AGG | 0.534995 | 1_3:-19191934 | Msa0107990:CDS |
| ATATGCAGAAGTACGAGGTA+AGG | 0.546647 | 1_3:-19195477 | Msa0107990:intron |
| ACGTCTACAAAGAGTGATAG+TGG | 0.552529 | 1_3:+19195357 | None:intergenic |
| GTGGACGAGGTTATAGTGAC+GGG | 0.562263 | 1_3:-19191921 | Msa0107990:CDS |
| TTTGGAGACCTCATCATGGA+TGG | 0.573530 | 1_3:-19195259 | Msa0107990:CDS |
| GAAGCTGAAAGAGATGGGTG+TGG | 0.582581 | 1_3:-19191940 | Msa0107990:CDS |
| TTCCGATCATGGTATGCTTG+AGG | 0.582788 | 1_3:-19195290 | Msa0107990:CDS |
| TGTGGACGAGGTTATAGTGA+CGG | 0.588936 | 1_3:-19191922 | Msa0107990:CDS |
| ATGGTATGCTTGAGGAGTGG+TGG | 0.593682 | 1_3:-19195282 | Msa0107990:CDS |
| AGTGTGAAATCAACACTGCT+CGG | 0.595512 | 1_3:-19191673 | Msa0107990:three_prime_UTR |
| GTTGAGATTGGCAAGAATTG+GGG | 0.610636 | 1_3:+19195381 | None:intergenic |
| TACAGCGCATTTAGGAACAC+GGG | 0.610971 | 1_3:-19191972 | Msa0107990:CDS |
| GTGGTTTGGAGACCTCATCA+TGG | 0.622020 | 1_3:-19195263 | Msa0107990:CDS |
| TTGTGAGACAACGGCGAGTG+AGG | 0.622963 | 1_3:-19191880 | Msa0107990:CDS |
| ATGACGGCTTTGGACCGCAA+CGG | 0.635890 | 1_3:-19195217 | Msa0107990:intron |
| GCGTGTGAATATGACGAGGA+TGG | 0.642154 | 1_3:+19195330 | None:intergenic |
| CGTAGAGGCTGAGCTCATGA+CGG | 0.643168 | 1_3:-19195233 | Msa0107990:CDS |
| TCAAGCATACCATGATCGGA+AGG | 0.643341 | 1_3:+19195292 | None:intergenic |
| ATACAGCGCATTTAGGAACA+CGG | 0.644088 | 1_3:-19191973 | Msa0107990:CDS |
| CATCATGGATGGCTCCGTAG+AGG | 0.646504 | 1_3:-19195248 | Msa0107990:CDS |
| CTACGGAGCCATCCATGATG+AGG | 0.647631 | 1_3:+19195251 | None:intergenic |
| GTGTATGTTAGGTGAGGACA+TGG | 0.661242 | 1_3:-19192012 | Msa0107990:intron |
| TCACACTCGAATTTATAACA+AGG | 0.676462 | 1_3:+19191689 | None:intergenic |
| TATGTTAGGTGAGGACATGG+TGG | 0.677198 | 1_3:-19192009 | Msa0107990:intron |
| CATGATCGGAAGGAGACTTG+TGG | 0.678620 | 1_3:+19195302 | None:intergenic |
| TCATCATATGCAGAAGTACG+AGG | 0.688932 | 1_3:-19195482 | Msa0107990:intron |
| ATCATGGTATGCTTGAGGAG+TGG | 0.699844 | 1_3:-19195285 | Msa0107990:CDS |
| TAACTTGTGTTGTGAGACAA+CGG | 0.702864 | 1_3:-19191889 | Msa0107990:CDS |
| AGTGGCGTGTGAATATGACG+AGG | 0.836844 | 1_3:+19195326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTTATTATAAATTGAAT+TGG | - | chr1_3:19191695-19191714 | Msa0107990:three_prime_UTR | 10.0% |
| !! | TTATAAAAACTTATTAGTTA+TGG | - | chr1_3:19191768-19191787 | Msa0107990:CDS | 10.0% |
| !!! | ACAAAATTTTGTTTTATTTT+TGG | + | chr1_3:19193189-19193208 | None:intergenic | 10.0% |
| !! | TCAATTTATAATAAATCAAG+AGG | + | chr1_3:19191693-19191712 | None:intergenic | 15.0% |
| !! | AGACTAATTAATAATGTTTA+CGG | + | chr1_3:19192823-19192842 | None:intergenic | 15.0% |
| !!! | TAAACATTATTAATTAGTCT+TGG | - | chr1_3:19192823-19192842 | Msa0107990:intron | 15.0% |
| !!! | CAAACTTTGTTATATTTATA+AGG | + | chr1_3:19192926-19192945 | None:intergenic | 15.0% |
| !! | AACAAAATAAAAAATTTGTG+AGG | + | chr1_3:19192986-19193005 | None:intergenic | 15.0% |
| !!! | ACATAAAAGTGTTATAATAT+GGG | + | chr1_3:19193046-19193065 | None:intergenic | 15.0% |
| !!! | AACATAAAAGTGTTATAATA+TGG | + | chr1_3:19193047-19193066 | None:intergenic | 15.0% |
| !!! | AAATAAAACAAAATTTTGTG+AGG | - | chr1_3:19193190-19193209 | Msa0107990:intron | 15.0% |
| !!! | CATGATATAAATTTTCTTAT+GGG | + | chr1_3:19193295-19193314 | None:intergenic | 15.0% |
| !!! | TTACTTTACCTTTTTTTTTT+TGG | + | chr1_3:19193444-19193463 | None:intergenic | 15.0% |
| !! | GTCAAAATAATAATAATTGA+TGG | - | chr1_3:19193857-19193876 | Msa0107990:intron | 15.0% |
| !!! | AAAATTTTAATGTATGAATG+AGG | - | chr1_3:19193936-19193955 | Msa0107990:intron | 15.0% |
| !! | TTTATTGAATTAAAATACTG+CGG | - | chr1_3:19193976-19193995 | Msa0107990:intron | 15.0% |
| !!! | ATTGTTTTAATACAAATACT+TGG | + | chr1_3:19194161-19194180 | None:intergenic | 15.0% |
| !! | TAACATAAATAATCAAGAAA+TGG | + | chr1_3:19194342-19194361 | None:intergenic | 15.0% |
| !!! | AGTTGTAGTTATTTTATATA+AGG | - | chr1_3:19194897-19194916 | Msa0107990:intron | 15.0% |
| !! | AAAATTAAAAAAGTTACTGT+TGG | + | chr1_3:19195045-19195064 | None:intergenic | 15.0% |
| !! | AAAGGTAAAGTTTAATTATT+AGG | + | chr1_3:19195534-19195553 | None:intergenic | 15.0% |
| !! | TTAAATACGTAAAAAAACAA+GGG | + | chr1_3:19195696-19195715 | None:intergenic | 15.0% |
| !! | ATTAAATACGTAAAAAAACA+AGG | + | chr1_3:19195697-19195716 | None:intergenic | 15.0% |
| !!! | TTTTTACGTATTTAATTTCA+AGG | - | chr1_3:19195701-19195720 | Msa0107990:intron | 15.0% |
| !!! | TTTTCAAAATCATTTCTATA+TGG | - | chr1_3:19195840-19195859 | Msa0107990:intron | 15.0% |
| !! | TATTTGTAGTGAAATTTGTA+AGG | + | chr1_3:19192698-19192717 | None:intergenic | 20.0% |
| !! | CTAAAAAAACGAACATAATA+GGG | + | chr1_3:19193081-19193100 | None:intergenic | 20.0% |
| !! | ACTAAAAAAACGAACATAAT+AGG | + | chr1_3:19193082-19193101 | None:intergenic | 20.0% |
| !! | ATGTCAAAATTATATCCATT+AGG | - | chr1_3:19193161-19193180 | Msa0107990:intron | 20.0% |
| !! | TGTCAAAATTATATCCATTA+GGG | - | chr1_3:19193162-19193181 | Msa0107990:intron | 20.0% |
| !!! | GCATGATATAAATTTTCTTA+TGG | + | chr1_3:19193296-19193315 | None:intergenic | 20.0% |
| !! | TTCTTGTACCAAAAAAAAAA+AGG | - | chr1_3:19193433-19193452 | Msa0107990:intron | 20.0% |
| !! | GTTTCAAAATCATTTCTATA+TGG | - | chr1_3:19193624-19193643 | Msa0107990:intron | 20.0% |
| !! | TAAGCAATGATTTAAATGTT+AGG | - | chr1_3:19193811-19193830 | Msa0107990:intron | 20.0% |
| !! | AAGCAATGATTTAAATGTTA+GGG | - | chr1_3:19193812-19193831 | Msa0107990:intron | 20.0% |
| !!! | TCAGTGTATATTTTCTTTAA+TGG | + | chr1_3:19194056-19194075 | None:intergenic | 20.0% |
| !! | TTCAAAATTGTATCTGTAAA+GGG | + | chr1_3:19194299-19194318 | None:intergenic | 20.0% |
| !! | CGTATCAAAATTAAAATGAA+AGG | + | chr1_3:19195142-19195161 | None:intergenic | 20.0% |
| !!! | GAAAGACAAATAATTTTCAT+TGG | + | chr1_3:19195339-19195358 | None:intergenic | 20.0% |
| !! | AAGTCAATAATAGAGATATA+TGG | + | chr1_3:19195439-19195458 | None:intergenic | 20.0% |
| !!! | GAGGATAAAATACTTTTTTT+AGG | - | chr1_3:19195563-19195582 | Msa0107990:intron | 20.0% |
| !!! | ATTTTTTTCGTTTTACTTAG+GGG | + | chr1_3:19196161-19196180 | None:intergenic | 20.0% |
| !!! | CATTTTTTTCGTTTTACTTA+GGG | + | chr1_3:19196162-19196181 | None:intergenic | 20.0% |
| !!! | TCATTTTTTTCGTTTTACTT+AGG | + | chr1_3:19196163-19196182 | None:intergenic | 20.0% |
| !! | TATAATCATAAACTAGAAAC+TGG | + | chr1_3:19196265-19196284 | None:intergenic | 20.0% |
| !! | AAAAGCTACCAAGTATTTTA+AGG | - | chr1_3:19191559-19191578 | Msa0107990:three_prime_UTR | 25.0% |
| ! | TGAATTTATCACACCATTAA+AGG | - | chr1_3:19192034-19192053 | Msa0107990:intron | 25.0% |
| ! | AAAGTGATGATAACCTTTAA+TGG | + | chr1_3:19192050-19192069 | None:intergenic | 25.0% |
| ! | ATGGAGTTTAATTCATACAT+GGG | + | chr1_3:19192076-19192095 | None:intergenic | 25.0% |
| ! | GTTCTATTAATGTGTATTGA+TGG | + | chr1_3:19192095-19192114 | None:intergenic | 25.0% |
| !!! | GCTTCATTTTTGTTATCAAT+TGG | - | chr1_3:19192286-19192305 | Msa0107990:intron | 25.0% |
| !!! | ATTGATTTTCAGTGTATTTG+CGG | + | chr1_3:19192344-19192363 | None:intergenic | 25.0% |
| ! | TCAATTATCAAACTTGAGTA+AGG | - | chr1_3:19192775-19192794 | Msa0107990:intron | 25.0% |
| !!! | ACACTCAGCTTAATTTTTTA+GGG | + | chr1_3:19192957-19192976 | None:intergenic | 25.0% |
| !!! | AACACTCAGCTTAATTTTTT+AGG | + | chr1_3:19192958-19192977 | None:intergenic | 25.0% |
| !!! | GAAGGATATTTTAAAACTGT+GGG | + | chr1_3:19193387-19193406 | None:intergenic | 25.0% |
| ! | TTAAAATATCCTTCCAAAAG+TGG | - | chr1_3:19193393-19193412 | Msa0107990:intron | 25.0% |
| ! | ATTTCTATATGGTGTATGTT+AGG | - | chr1_3:19193635-19193654 | Msa0107990:intron | 25.0% |
| ! | GTTCAAAATTGTATCTGTAA+AGG | + | chr1_3:19194300-19194319 | None:intergenic | 25.0% |
| ! | AATATACATGTTTGCACAAT+TGG | - | chr1_3:19194506-19194525 | Msa0107990:intron | 25.0% |
| ! | GGAATAAAAATGAGTTTGAT+TGG | - | chr1_3:19194623-19194642 | Msa0107990:intron | 25.0% |
| !! | TAAGTCTGTGTTTTATGAAA+TGG | + | chr1_3:19194850-19194869 | None:intergenic | 25.0% |
| ! | TAGAATCATTAATTTCACCA+TGG | + | chr1_3:19194957-19194976 | None:intergenic | 25.0% |
| ! | ATGATTCTATTGTGTATAGA+AGG | - | chr1_3:19194968-19194987 | Msa0107990:intron | 25.0% |
| ! | AAAATGAAAGGATATCATGT+GGG | + | chr1_3:19195130-19195149 | None:intergenic | 25.0% |
| ! | TAAAATGAAAGGATATCATG+TGG | + | chr1_3:19195131-19195150 | None:intergenic | 25.0% |
| ! | AGTTGTTATGTTTGTTTACA+AGG | - | chr1_3:19195178-19195197 | Msa0107990:intron | 25.0% |
| ! | TTTATCCTCAATTAAGCAAA+AGG | + | chr1_3:19195552-19195571 | None:intergenic | 25.0% |
| ! | TGTGAACTTATTGAAAATCA+GGG | + | chr1_3:19195668-19195687 | None:intergenic | 25.0% |
| ! | TTGTGAACTTATTGAAAATC+AGG | + | chr1_3:19195669-19195688 | None:intergenic | 25.0% |
| ! | ATTTCTATATGGTGTATGTT+AGG | - | chr1_3:19193635-19193654 | Msa0107990:intron | 25.0% |
| GATGGAGTTTAATTCATACA+TGG | + | chr1_3:19192077-19192096 | None:intergenic | 30.0% | |
| TAGAACATTGTGTATAAGTG+AGG | - | chr1_3:19192109-19192128 | Msa0107990:intron | 30.0% | |
| TGAACATAAAGTGGTCATTA+AGG | + | chr1_3:19193015-19193034 | None:intergenic | 30.0% | |
| !!! | GTTTTATTTTTGGTCCCTAA+TGG | + | chr1_3:19193179-19193198 | None:intergenic | 30.0% |
| !!! | ATATTTTAAAACTGTGGGTG+TGG | + | chr1_3:19193382-19193401 | None:intergenic | 30.0% |
| !!! | GGAAGGATATTTTAAAACTG+TGG | + | chr1_3:19193388-19193407 | None:intergenic | 30.0% |
| ! | GACATGATCTTCATGTTTTT+AGG | + | chr1_3:19194186-19194205 | None:intergenic | 30.0% |
| ! | ATTTAGTGTGCACATGATTT+TGG | + | chr1_3:19194235-19194254 | None:intergenic | 30.0% |
| CACTAAATACTTATCGTGTA+TGG | - | chr1_3:19194247-19194266 | Msa0107990:intron | 30.0% | |
| CTTGATTATTTATGTTACCG+TGG | - | chr1_3:19194345-19194364 | Msa0107990:intron | 30.0% | |
| ATACTACGTCTAATTAACCA+CGG | + | chr1_3:19194365-19194384 | None:intergenic | 30.0% | |
| GTTAATTAGACGTAGTATCA+AGG | - | chr1_3:19194367-19194386 | Msa0107990:intron | 30.0% | |
| ! | TGCAAAAGTTGTAGAGTTTT+AGG | - | chr1_3:19194602-19194621 | Msa0107990:intron | 30.0% |
| TTCTGAACACAAAATTGATG+AGG | - | chr1_3:19194720-19194739 | Msa0107990:intron | 30.0% | |
| ACTTACGATATATAGTTGAC+AGG | + | chr1_3:19194760-19194779 | None:intergenic | 30.0% | |
| AGAATCTAACTAGTTCAACA+AGG | + | chr1_3:19194927-19194946 | None:intergenic | 30.0% | |
| GAACTAGTTAGATTCTTTCA+TGG | - | chr1_3:19194931-19194950 | Msa0107990:intron | 30.0% | |
| AAATGAAAGGATATCATGTG+GGG | + | chr1_3:19195129-19195148 | None:intergenic | 30.0% | |
| TAACTGGATTTGCAAAATGA+AGG | + | chr1_3:19195244-19195263 | None:intergenic | 30.0% | |
| ACAACTAACATTAGAGTTCA+AGG | + | chr1_3:19195473-19195492 | None:intergenic | 30.0% | |
| TGTTAGTTGTAACGTTACAT+TGG | - | chr1_3:19195483-19195502 | Msa0107990:intron | 30.0% | |
| ! | CTTTACCTTTTGCTTAATTG+AGG | - | chr1_3:19195544-19195563 | Msa0107990:intron | 30.0% |
| TGAAGCTACATTGAAAAACA+TGG | - | chr1_3:19196084-19196103 | Msa0107990:intron | 30.0% | |
| ACATTGAAAAACATGGCTTA+TGG | - | chr1_3:19196091-19196110 | Msa0107990:intron | 30.0% | |
| TCACACTCGAATTTATAACA+AGG | + | chr1_3:19196188-19196207 | None:intergenic | 30.0% | |
| !!! | GCTACCAAGTATTTTAAGGT+TGG | - | chr1_3:19191563-19191582 | Msa0107990:three_prime_UTR | 35.0% |
| TGCACCAACCTTAAAATACT+TGG | + | chr1_3:19191570-19191589 | None:intergenic | 35.0% | |
| ! | AAAATGTTGATGAGTGTCCA+AGG | + | chr1_3:19191808-19191827 | None:intergenic | 35.0% |
| AGTGAGGATTAACTTCAACA+TGG | - | chr1_3:19192125-19192144 | Msa0107990:intron | 35.0% | |
| GTGAGGATTAACTTCAACAT+GGG | - | chr1_3:19192126-19192145 | Msa0107990:intron | 35.0% | |
| TGTATTCAAAGCAAAGTGCA+GGG | + | chr1_3:19192166-19192185 | None:intergenic | 35.0% | |
| ATGTATTCAAAGCAAAGTGC+AGG | + | chr1_3:19192167-19192186 | None:intergenic | 35.0% | |
| GTGCAAATGTTTGAGGATTT+GGG | + | chr1_3:19192431-19192450 | None:intergenic | 35.0% | |
| AGTGCAAATGTTTGAGGATT+TGG | + | chr1_3:19192432-19192451 | None:intergenic | 35.0% | |
| TGTTGAGATTGGCAAGAATT+GGG | + | chr1_3:19192497-19192516 | None:intergenic | 35.0% | |
| !!! | TTAATTTTGACTCACCGTTG+CGG | + | chr1_3:19192674-19192693 | None:intergenic | 35.0% |
| AACTTGAGTAAGGTGTGATT+TGG | - | chr1_3:19192785-19192804 | Msa0107990:intron | 35.0% | |
| ! | TAGTCTTGGTTTGAGTTTCT+TGG | - | chr1_3:19192837-19192856 | Msa0107990:intron | 35.0% |
| ! | TCTTTTAACAGTTGTCAACG+AGG | + | chr1_3:19192875-19192894 | None:intergenic | 35.0% |
| GCATTCACATGAACATAAAG+TGG | + | chr1_3:19193024-19193043 | None:intergenic | 35.0% | |
| ! | TACTTTACCTAGTCCACTTT+TGG | + | chr1_3:19193409-19193428 | None:intergenic | 35.0% |
| TATATGGTGTATGTTAGGTG+AGG | - | chr1_3:19193640-19193659 | Msa0107990:intron | 35.0% | |
| AAATACTTGGAGTCCCAAAT+CGG | + | chr1_3:19194148-19194167 | None:intergenic | 35.0% | |
| TCATGTCTTAACATCGTCTA+TGG | - | chr1_3:19194199-19194218 | Msa0107990:intron | 35.0% | |
| ATCTTGTATTCATAAACCGC+CGG | + | chr1_3:19194418-19194437 | None:intergenic | 35.0% | |
| TGCACAATTGGCAGTTTAAA+AGG | - | chr1_3:19194518-19194537 | Msa0107990:intron | 35.0% | |
| TAGTGAGTCGAAAGATATGA+AGG | + | chr1_3:19194818-19194837 | None:intergenic | 35.0% | |
| CTTTCGACTCACTAAAACTT+TGG | - | chr1_3:19194824-19194843 | Msa0107990:intron | 35.0% | |
| ACTGTTGCATCAGAATTTAG+AGG | + | chr1_3:19195100-19195119 | None:intergenic | 35.0% | |
| !!! | TGTTTACAAGGTTTTTAGCC+CGG | - | chr1_3:19195190-19195209 | Msa0107990:intron | 35.0% |
| TGGATTTGCAAAATGAAGGA+CGG | + | chr1_3:19195240-19195259 | None:intergenic | 35.0% | |
| TCCAAGGTAAATAAGAGGAA+GGG | + | chr1_3:19195295-19195314 | None:intergenic | 35.0% | |
| !! | ATGTTATTTCTCTCAGTCCA+AGG | + | chr1_3:19195311-19195330 | None:intergenic | 35.0% |
| TGATGATAATCTTCGTCAAC+TGG | - | chr1_3:19195590-19195609 | Msa0107990:intron | 35.0% | |
| TATATGGTGTATGTTAGGTG+AGG | - | chr1_3:19193640-19193659 | Msa0107990:intron | 35.0% | |
| ! | TAACTTGTGTTGTGAGACAA+CGG | - | chr1_3:19195985-19196004 | Msa0107990:intron | 35.0% |
| CTTACTTTCTTGATTGTCAC+AGG | - | chr1_3:19196119-19196138 | Msa0107990:intron | 35.0% | |
| ! | TTCGTTTTACTTAGGGGTAA+GGG | + | chr1_3:19196155-19196174 | None:intergenic | 35.0% |
| ! | TTTCGTTTTACTTAGGGGTA+AGG | + | chr1_3:19196156-19196175 | None:intergenic | 35.0% |
| GTGGCTATATATAGGCAAAG+TGG | + | chr1_3:19192197-19192216 | None:intergenic | 40.0% | |
| GAGGCAAAGTGGCTATATAT+AGG | + | chr1_3:19192205-19192224 | None:intergenic | 40.0% | |
| ! | ATCGTTAACTTGGCATCTGA+AGG | + | chr1_3:19192229-19192248 | None:intergenic | 40.0% |
| AGATGCCAAGTTAACGATGT+GGG | - | chr1_3:19192231-19192250 | Msa0107990:intron | 40.0% | |
| AAAGACCCACATCGTTAACT+TGG | + | chr1_3:19192239-19192258 | None:intergenic | 40.0% | |
| ATCGTGTCAACATCAGAATG+TGG | - | chr1_3:19192262-19192281 | Msa0107990:intron | 40.0% | |
| TCGTGTCAACATCAGAATGT+GGG | - | chr1_3:19192263-19192282 | Msa0107990:intron | 40.0% | |
| ! | TCATCATATGCAGAAGTACG+AGG | - | chr1_3:19192392-19192411 | Msa0107990:intron | 40.0% |
| ! | ATATGCAGAAGTACGAGGTA+AGG | - | chr1_3:19192397-19192416 | Msa0107990:intron | 40.0% |
| TCCTCAAACATTTGCACTGT+TGG | - | chr1_3:19192434-19192453 | Msa0107990:intron | 40.0% | |
| ACCAACAGTGCAAATGTTTG+AGG | + | chr1_3:19192438-19192457 | None:intergenic | 40.0% | |
| GCAGAATTACTTCTCTTCCA+TGG | - | chr1_3:19192467-19192486 | Msa0107990:intron | 40.0% | |
| GTTGAGATTGGCAAGAATTG+GGG | + | chr1_3:19192496-19192515 | None:intergenic | 40.0% | |
| GTGTTGAGATTGGCAAGAAT+TGG | + | chr1_3:19192498-19192517 | None:intergenic | 40.0% | |
| !! | AGTGATAGTGGTGTTGAGAT+TGG | + | chr1_3:19192508-19192527 | None:intergenic | 40.0% |
| ACGTCTACAAAGAGTGATAG+TGG | + | chr1_3:19192520-19192539 | None:intergenic | 40.0% | |
| ACAATGAAATGGTGGTTTCG+CGG | + | chr1_3:19193358-19193377 | None:intergenic | 40.0% | |
| ! | TATCCTTCCAAAAGTGGACT+AGG | - | chr1_3:19193399-19193418 | Msa0107990:intron | 40.0% |
| !! | TTACCTAGTCCACTTTTGGA+AGG | + | chr1_3:19193405-19193424 | None:intergenic | 40.0% |
| GAAGTACATACAGCGCATTT+AGG | - | chr1_3:19193676-19193695 | Msa0107990:intron | 40.0% | |
| GGAAGAGAAAGTGAAAGAGA+TGG | - | chr1_3:19193710-19193729 | Msa0107990:intron | 40.0% | |
| GAAAGTGAAAGAGATGGATG+TGG | - | chr1_3:19193716-19193735 | Msa0107990:intron | 40.0% | |
| GTATCTGTAAAGGGTGATGT+TGG | + | chr1_3:19194290-19194309 | None:intergenic | 40.0% | |
| TCTTGTATTCATAAACCGCC+GGG | + | chr1_3:19194417-19194436 | None:intergenic | 40.0% | |
| CTTTGTTAGCTGAAATGTGC+TGG | - | chr1_3:19194660-19194679 | Msa0107990:intron | 40.0% | |
| GTTAGATTCTTTCATGGCCA+TGG | - | chr1_3:19194937-19194956 | Msa0107990:intron | 40.0% | |
| ATTTCCTTCAGCACCAAACA+AGG | - | chr1_3:19194993-19195012 | Msa0107990:intron | 40.0% | |
| TTGGATCGTATAGCCTAAAG+GGG | + | chr1_3:19195026-19195045 | None:intergenic | 40.0% | |
| GTTGGATCGTATAGCCTAAA+GGG | + | chr1_3:19195027-19195046 | None:intergenic | 40.0% | |
| TGTTGGATCGTATAGCCTAA+AGG | + | chr1_3:19195028-19195047 | None:intergenic | 40.0% | |
| AGTTTATAGCTGGAGATTCC+GGG | + | chr1_3:19195211-19195230 | None:intergenic | 40.0% | |
| GAGTTTATAGCTGGAGATTC+CGG | + | chr1_3:19195212-19195231 | None:intergenic | 40.0% | |
| ACGGTAAAGGAGTTTATAGC+TGG | + | chr1_3:19195221-19195240 | None:intergenic | 40.0% | |
| TGCAAAATGAAGGACGGTAA+AGG | + | chr1_3:19195234-19195253 | None:intergenic | 40.0% | |
| GTCCAAGGTAAATAAGAGGA+AGG | + | chr1_3:19195296-19195315 | None:intergenic | 40.0% | |
| CTCAGTCCAAGGTAAATAAG+AGG | + | chr1_3:19195300-19195319 | None:intergenic | 40.0% | |
| AGAGTACATACAGCGCATTT+AGG | - | chr1_3:19195894-19195913 | Msa0107990:intron | 40.0% | |
| ATACAGCGCATTTAGGAACA+CGG | - | chr1_3:19195901-19195920 | Msa0107990:intron | 40.0% | |
| GAAGAGAAGCTGAAAGAGAT+GGG | - | chr1_3:19195929-19195948 | Msa0107990:intron | 40.0% | |
| AGGCCTTTATTAGAGGCTTT+AGG | - | chr1_3:19196014-19196033 | Msa0107990:intron | 40.0% | |
| GGCCTTTATTAGAGGCTTTA+GGG | - | chr1_3:19196015-19196034 | Msa0107990:intron | 40.0% | |
| CACCCTAAAGCCTCTAATAA+AGG | + | chr1_3:19196020-19196039 | None:intergenic | 40.0% | |
| AGTGTGAAATCAACACTGCT+CGG | - | chr1_3:19196201-19196220 | Msa0107990:intron | 40.0% | |
| !! | TGGTGCTTAAAGAGTGTCCT+TGG | - | chr1_3:19191788-19191807 | Msa0107990:CDS | 45.0% |
| TAACTTGGCATCTGAAGGAG+AGG | + | chr1_3:19192224-19192243 | None:intergenic | 45.0% | |
| CAGATGCCAAGTTAACGATG+TGG | - | chr1_3:19192230-19192249 | Msa0107990:intron | 45.0% | |
| CGTGTCAACATCAGAATGTG+GGG | - | chr1_3:19192264-19192283 | Msa0107990:intron | 45.0% | |
| TCAAGCATACCATGATCGGA+AGG | + | chr1_3:19192585-19192604 | None:intergenic | 45.0% | |
| TTCCGATCATGGTATGCTTG+AGG | - | chr1_3:19192584-19192603 | Msa0107990:intron | 45.0% | |
| CTCCTCAAGCATACCATGAT+CGG | + | chr1_3:19192589-19192608 | None:intergenic | 45.0% | |
| ATCATGGTATGCTTGAGGAG+TGG | - | chr1_3:19192589-19192608 | Msa0107990:intron | 45.0% | |
| TTTGGAGACCTCATCATGGA+TGG | - | chr1_3:19192615-19192634 | Msa0107990:intron | 45.0% | |
| GTGGTTTCGCGGTGTAAAAT+TGG | + | chr1_3:19193347-19193366 | None:intergenic | 45.0% | |
| GTGTATGTTAGGTGAGGACA+TGG | - | chr1_3:19193646-19193665 | Msa0107990:intron | 45.0% | |
| TATGTTAGGTGAGGACATGG+TGG | - | chr1_3:19193649-19193668 | Msa0107990:intron | 45.0% | |
| GAAAGAGATGGATGTGGATG+AGG | - | chr1_3:19193722-19193741 | Msa0107990:intron | 45.0% | |
| CAAGCAAAGGAGAGTCAAAG+TGG | + | chr1_3:19194117-19194136 | None:intergenic | 45.0% | |
| ATCGGAACTTTGGCAAGCAA+AGG | + | chr1_3:19194130-19194149 | None:intergenic | 45.0% | |
| TGCTTGCCAAAGTTCCGATT+TGG | - | chr1_3:19194131-19194150 | Msa0107990:intron | 45.0% | |
| GCTTGCCAAAGTTCCGATTT+GGG | - | chr1_3:19194132-19194151 | Msa0107990:intron | 45.0% | |
| TGTAAAGGGTGATGTTGGTG+TGG | + | chr1_3:19194285-19194304 | None:intergenic | 45.0% | |
| ! | GTATAGCCTAAAGGGGTATG+TGG | + | chr1_3:19195019-19195038 | None:intergenic | 45.0% |
| AACTCGGTTGGCGAAATAAC+TGG | + | chr1_3:19195260-19195279 | None:intergenic | 45.0% | |
| ATTTCGCCAACCGAGTTGTT+TGG | - | chr1_3:19195263-19195282 | Msa0107990:CDS | 45.0% | |
| TTTCGCCAACCGAGTTGTTT+GGG | - | chr1_3:19195264-19195283 | Msa0107990:CDS | 45.0% | |
| ! | GCCCTTCCTCTTATTTACCT+TGG | - | chr1_3:19195291-19195310 | Msa0107990:CDS | 45.0% |
| GTGTATGTTAGGTGAGGACA+TGG | - | chr1_3:19193646-19193665 | Msa0107990:intron | 45.0% | |
| TATGTTAGGTGAGGACATGG+TGG | - | chr1_3:19193649-19193668 | Msa0107990:intron | 45.0% | |
| TACAGCGCATTTAGGAACAC+GGG | - | chr1_3:19195902-19195921 | Msa0107990:intron | 45.0% | |
| GGAAGAGAAGCTGAAAGAGA+TGG | - | chr1_3:19195928-19195947 | Msa0107990:intron | 45.0% | |
| TGTGGACGAGGTTATAGTGA+CGG | - | chr1_3:19195952-19195971 | Msa0107990:intron | 45.0% | |
| CATCTGAAGGAGAGGCAAAG+TGG | + | chr1_3:19192216-19192235 | None:intergenic | 50.0% | |
| GCGTGTGAATATGACGAGGA+TGG | + | chr1_3:19192547-19192566 | None:intergenic | 50.0% | |
| AGTGGCGTGTGAATATGACG+AGG | + | chr1_3:19192551-19192570 | None:intergenic | 50.0% | |
| CATGATCGGAAGGAGACTTG+TGG | + | chr1_3:19192575-19192594 | None:intergenic | 50.0% | |
| CACAAGTCTCCTTCCGATCA+TGG | - | chr1_3:19192573-19192592 | Msa0107990:intron | 50.0% | |
| ATGGTATGCTTGAGGAGTGG+TGG | - | chr1_3:19192592-19192611 | Msa0107990:intron | 50.0% | |
| ATGCTTGAGGAGTGGTGGTT+TGG | - | chr1_3:19192597-19192616 | Msa0107990:intron | 50.0% | |
| ! | GTGGTTTGGAGACCTCATCA+TGG | - | chr1_3:19192611-19192630 | Msa0107990:intron | 50.0% |
| GGTGTGGCACAATGAAATGG+TGG | + | chr1_3:19193366-19193385 | None:intergenic | 50.0% | |
| GTGGGTGTGGCACAATGAAA+TGG | + | chr1_3:19193369-19193388 | None:intergenic | 50.0% | |
| TACAGCGCATTTAGGAACGC+AGG | - | chr1_3:19193684-19193703 | Msa0107990:intron | 50.0% | |
| CGCATTTAGGAACGCAGGTT+TGG | - | chr1_3:19193689-19193708 | Msa0107990:intron | 50.0% | |
| GGAGTCCCAAATCGGAACTT+TGG | + | chr1_3:19194140-19194159 | None:intergenic | 50.0% | |
| GGTGATGTTGGTGTGGAGAT+TGG | + | chr1_3:19194278-19194297 | None:intergenic | 50.0% | |
| GTGAAACCTTAACTGCGACC+CGG | - | chr1_3:19194396-19194415 | Msa0107990:intron | 50.0% | |
| !! | GTGCTGGTTCAGAGAGTAAG+CGG | - | chr1_3:19194676-19194695 | Msa0107990:intron | 50.0% |
| GTTCAGAGAGTAAGCGGCAA+AGG | - | chr1_3:19194682-19194701 | Msa0107990:intron | 50.0% | |
| !! | AAGGGGTATGTGGCCTTGTT+TGG | + | chr1_3:19195009-19195028 | None:intergenic | 50.0% |
| ACAAGGCCACATACCCCTTT+AGG | - | chr1_3:19195010-19195029 | Msa0107990:intron | 50.0% | |
| TTCGCCAACCGAGTTGTTTG+GGG | - | chr1_3:19195265-19195284 | Msa0107990:CDS | 50.0% | |
| CGCATTTAGGAACACGGGTT+TGG | - | chr1_3:19195907-19195926 | Msa0107990:intron | 50.0% | |
| GAAGCTGAAAGAGATGGGTG+TGG | - | chr1_3:19195934-19195953 | Msa0107990:intron | 50.0% | |
| GTGGACGAGGTTATAGTGAC+GGG | - | chr1_3:19195953-19195972 | Msa0107990:intron | 50.0% | |
| GCGAGTGAGGCCTTTATTAG+AGG | - | chr1_3:19196007-19196026 | Msa0107990:intron | 50.0% | |
| CTACGGAGCCATCCATGATG+AGG | + | chr1_3:19192626-19192645 | None:intergenic | 55.0% | |
| CATCATGGATGGCTCCGTAG+AGG | - | chr1_3:19192626-19192645 | Msa0107990:intron | 55.0% | |
| CGTCATGAGCTCAGCCTCTA+CGG | + | chr1_3:19192643-19192662 | None:intergenic | 55.0% | |
| CGTAGAGGCTGAGCTCATGA+CGG | - | chr1_3:19192641-19192660 | Msa0107990:intron | 55.0% | |
| !! | ATGACGGCTTTGGACCGCAA+CGG | - | chr1_3:19192657-19192676 | Msa0107990:intron | 55.0% |
| AAACCTTAACTGCGACCCGG+CGG | - | chr1_3:19194399-19194418 | Msa0107990:intron | 55.0% | |
| !! | GTGGCCTTGTTTGGTGCTGA+AGG | + | chr1_3:19195000-19195019 | None:intergenic | 55.0% |
| CATGCCCCAAACAACTCGGT+TGG | + | chr1_3:19195272-19195291 | None:intergenic | 55.0% | |
| AGGGCATGCCCCAAACAACT+CGG | + | chr1_3:19195276-19195295 | None:intergenic | 55.0% | |
| GAAAGAGATGGGTGTGGACG+AGG | - | chr1_3:19195940-19195959 | Msa0107990:intron | 55.0% | |
| TTGTGAGACAACGGCGAGTG+AGG | - | chr1_3:19195994-19196013 | Msa0107990:intron | 55.0% | |
| GGCAAGAATTGGGGCTGCCA+TGG | + | chr1_3:19192487-19192506 | None:intergenic | 60.0% | |
| CGGAAGGAGACTTGTGGCAG+TGG | + | chr1_3:19192569-19192588 | None:intergenic | 60.0% | |
| GGCTGAGCTCATGACGGCTT+TGG | - | chr1_3:19192647-19192666 | Msa0107990:intron | 60.0% | |
| AAACCGCCGGGTCGCAGTTA+AGG | + | chr1_3:19194405-19194424 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 19191554 | 19196342 | 19191554 | ID=Msa0107990;Name=Msa0107990 |
| chr1_3 | mRNA | 19191554 | 19196342 | 19191554 | ID=Msa0107990-mRNA-1;Parent=Msa0107990;Name=Msa0107990-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0.33|0.66|1|1|3|174|198 |
| chr1_3 | exon | 19191554 | 19192023 | 19191554 | ID=Msa0107990-mRNA-1:exon:6974;Parent=Msa0107990-mRNA-1 |
| chr1_3 | exon | 19195218 | 19195491 | 19195218 | ID=Msa0107990-mRNA-1:exon:6973;Parent=Msa0107990-mRNA-1 |
| chr1_3 | exon | 19196316 | 19196342 | 19196316 | ID=Msa0107990-mRNA-1:exon:6972;Parent=Msa0107990-mRNA-1 |
| chr1_3 | CDS | 19196316 | 19196342 | 19196316 | ID=Msa0107990-mRNA-1:cds;Parent=Msa0107990-mRNA-1 |
| chr1_3 | CDS | 19195218 | 19195491 | 19195218 | ID=Msa0107990-mRNA-1:cds;Parent=Msa0107990-mRNA-1 |
| chr1_3 | CDS | 19191728 | 19192023 | 19191728 | ID=Msa0107990-mRNA-1:cds;Parent=Msa0107990-mRNA-1 |
| chr1_3 | three_prime_UTR | 19191554 | 19191727 | 19191554 | ID=Msa0107990-mRNA-1:three_prime_utr;Parent=Msa0107990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
