Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170320 | sp|Q9LJU7|PPA18_ARATH | 68.943 | 454 | 124 | 1 | 34 | 487 | 1 | 437 | 0.0 | 677 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170320 | G7K8G7 | 93.612 | 454 | 14 | 1 | 34 | 487 | 1 | 439 | 0.0 | 888 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077760 | Msa0170320 | 0.886771 | 2.558597e-72 | -8.615850e-47 |
| Msa0096450 | Msa0170320 | 0.828544 | 8.475107e-55 | -8.615850e-47 |
| Msa0107990 | Msa0170320 | 0.807581 | 4.714262e-50 | -8.615850e-47 |
| Msa0170320 | Msa0195770 | 0.800120 | 1.672499e-48 | -8.615850e-47 |
| Msa0170320 | Msa0197130 | 0.848473 | 5.992109e-60 | -8.615850e-47 |
| Msa0170320 | Msa0204210 | 0.812048 | 5.158100e-51 | -8.615850e-47 |
| Msa0170320 | Msa0260910 | 0.801316 | 9.537699e-49 | -8.615850e-47 |
| Msa0170320 | Msa0276770 | 0.822621 | 2.148240e-53 | -8.615850e-47 |
| Msa0170320 | Msa0315290 | 0.808764 | 2.638251e-50 | -8.615850e-47 |
| Msa0170320 | Msa0356880 | 0.815610 | 8.462428e-52 | -8.615850e-47 |
| Msa0170320 | Msa0431690 | 0.805461 | 1.320140e-49 | -8.615850e-47 |
| Msa0170320 | Msa0470560 | 0.809978 | 1.448315e-50 | -8.615850e-47 |
| Msa0170320 | Msa0510380 | 0.803144 | 4.009843e-49 | -8.615850e-47 |
| Msa0170320 | Msa0528970 | 0.817931 | 2.552128e-52 | -8.615850e-47 |
| Msa0170320 | Msa0540070 | 0.819161 | 1.343116e-52 | -8.615850e-47 |
| Msa0170320 | Msa0543900 | 0.811596 | 6.468482e-51 | -8.615850e-47 |
| Msa0170320 | Msa0554740 | 0.808716 | 2.701131e-50 | -8.615850e-47 |
| Msa0170320 | Msa0564510 | 0.821384 | 4.155131e-53 | -8.615850e-47 |
| Msa0170320 | Msa0599770 | 0.821969 | 3.043778e-53 | -8.615850e-47 |
| Msa0170320 | Msa0599890 | 0.807490 | 4.927809e-50 | -8.615850e-47 |
| Msa0170320 | Msa0620970 | 0.806537 | 7.838373e-50 | -8.615850e-47 |
| Msa0170320 | Msa0626820 | 0.812056 | 5.135985e-51 | -8.615850e-47 |
| Msa0170320 | Msa0640380 | 0.807627 | 4.608198e-50 | -8.615850e-47 |
| Msa0170320 | Msa0678820 | 0.818810 | 1.614110e-52 | -8.615850e-47 |
| Msa0170320 | Msa0679990 | 0.809634 | 1.717439e-50 | -8.615850e-47 |
| Msa0170320 | Msa0684450 | 0.801263 | 9.779589e-49 | -8.615850e-47 |
| Msa0170320 | Msa0688550 | 0.807488 | 4.932097e-50 | -8.615850e-47 |
| Msa0170320 | Msa0695430 | 0.805708 | 1.171632e-49 | -8.615850e-47 |
| Msa0170320 | Msa0798860 | 0.816718 | 4.787409e-52 | -8.615850e-47 |
| Msa0170320 | Msa0839330 | 0.813985 | 1.940072e-51 | -8.615850e-47 |
| Msa0170320 | Msa0864480 | -0.803590 | 3.242244e-49 | -8.615850e-47 |
| Msa0170320 | Msa0876850 | -0.815049 | 1.128199e-51 | -8.615850e-47 |
| Msa0170320 | Msa0885280 | 0.801651 | 8.141501e-49 | -8.615850e-47 |
| Msa0170320 | Msa0942080 | -0.807327 | 5.336054e-50 | -8.615850e-47 |
| Msa0170320 | Msa0991670 | 0.807711 | 4.423875e-50 | -8.615850e-47 |
| Msa0170320 | Msa1019840 | -0.818859 | 1.573445e-52 | -8.615850e-47 |
| Msa0170320 | Msa1075220 | -0.815275 | 1.004691e-51 | -8.615850e-47 |
| Msa0170320 | Msa1078580 | -0.818207 | 2.210497e-52 | -8.615850e-47 |
| Msa0170320 | Msa1078750 | -0.819055 | 1.419667e-52 | -8.615850e-47 |
| Msa0170320 | Msa1131940 | -0.811005 | 8.692734e-51 | -8.615850e-47 |
| Msa0170320 | Msa1143270 | 0.816360 | 5.757250e-52 | -8.615850e-47 |
| Msa0170320 | Msa1186550 | 0.808988 | 2.362437e-50 | -8.615850e-47 |
| Msa0170320 | Msa1205130 | 0.823506 | 1.335417e-53 | -8.615850e-47 |
| Msa0170320 | Msa1252070 | 0.853448 | 2.374049e-61 | -8.615850e-47 |
| Msa0170320 | Msa1265340 | -0.811799 | 5.842374e-51 | -8.615850e-47 |
| Msa0170320 | Msa1271280 | 0.803191 | 3.921662e-49 | -8.615850e-47 |
| Msa0170320 | Msa1321350 | 0.811122 | 8.199246e-51 | -8.615850e-47 |
| Msa0170320 | Msa1345380 | 0.801916 | 7.182709e-49 | -8.615850e-47 |
| Msa0170320 | Msa1382160 | 0.836116 | 1.130057e-56 | -8.615850e-47 |
| Msa0170320 | Msa1438270 | 0.803336 | 3.660152e-49 | -8.615850e-47 |
| Msa0170320 | Msa1444060 | -0.811915 | 5.512652e-51 | -8.615850e-47 |
| Msa0170320 | Msa1452660 | 0.801938 | 7.111164e-49 | -8.615850e-47 |
| Msa0170320 | Msa1459950 | 0.810624 | 1.050653e-50 | -8.615850e-47 |
| Msa0170320 | Msa1464940 | 0.819998 | 8.651369e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170320 | MtrunA17_Chr5g0443881 | 93.612 | 454 | 14 | 1 | 34 | 487 | 1 | 439 | 0.0 | 888 |
| Msa0170320 | MtrunA17_Chr3g0098721 | 76.339 | 448 | 89 | 2 | 40 | 487 | 3 | 433 | 0.0 | 728 |
| Msa0170320 | MtrunA17_Chr1g0178831 | 64.879 | 373 | 130 | 1 | 99 | 470 | 48 | 420 | 0.0 | 523 |
| Msa0170320 | MtrunA17_Chr7g0266131 | 63.514 | 370 | 134 | 1 | 99 | 467 | 56 | 425 | 0.0 | 513 |
| Msa0170320 | MtrunA17_Chr7g0266151 | 55.023 | 438 | 168 | 6 | 36 | 470 | 11 | 422 | 9.23e-167 | 477 |
| Msa0170320 | MtrunA17_Chr4g0064541 | 40.580 | 414 | 217 | 8 | 99 | 486 | 57 | 467 | 3.14e-95 | 296 |
| Msa0170320 | MtrunA17_Chr4g0019091 | 42.239 | 393 | 199 | 8 | 99 | 464 | 57 | 448 | 1.33e-93 | 291 |
| Msa0170320 | MtrunA17_Chr6g0453731 | 36.226 | 530 | 234 | 14 | 31 | 464 | 5 | 526 | 2.14e-93 | 295 |
| Msa0170320 | MtrunA17_Chr1g0211041 | 42.132 | 394 | 199 | 9 | 99 | 464 | 58 | 450 | 7.40e-91 | 285 |
| Msa0170320 | MtrunA17_Chr3g0121411 | 39.035 | 456 | 185 | 10 | 99 | 464 | 73 | 525 | 3.89e-89 | 282 |
| Msa0170320 | MtrunA17_Chr3g0121431 | 38.293 | 457 | 189 | 10 | 99 | 465 | 128 | 581 | 8.38e-87 | 278 |
| Msa0170320 | MtrunA17_Chr7g0236041 | 37.665 | 454 | 194 | 9 | 99 | 464 | 72 | 524 | 9.59e-87 | 276 |
| Msa0170320 | MtrunA17_Chr4g0019071 | 44.079 | 304 | 151 | 5 | 194 | 478 | 36 | 339 | 1.08e-78 | 249 |
| Msa0170320 | MtrunA17_Chr4g0022251 | 30.341 | 323 | 181 | 9 | 110 | 392 | 231 | 549 | 2.50e-33 | 133 |
| Msa0170320 | MtrunA17_Chr1g0173511 | 29.254 | 335 | 181 | 11 | 110 | 392 | 94 | 424 | 3.69e-31 | 125 |
| Msa0170320 | MtrunA17_Chr4g0043001 | 27.211 | 441 | 240 | 14 | 75 | 436 | 117 | 555 | 1.15e-27 | 116 |
| Msa0170320 | MtrunA17_Chr4g0043021 | 28.345 | 441 | 234 | 17 | 75 | 436 | 118 | 555 | 1.91e-26 | 113 |
| Msa0170320 | MtrunA17_Chr5g0419621 | 25.641 | 390 | 225 | 14 | 117 | 455 | 215 | 590 | 2.37e-21 | 97.4 |
| Msa0170320 | MtrunA17_Chr3g0116051 | 23.391 | 466 | 267 | 17 | 89 | 472 | 159 | 616 | 2.38e-20 | 94.4 |
| Msa0170320 | MtrunA17_Chr8g0364481 | 26.420 | 352 | 204 | 13 | 153 | 455 | 238 | 583 | 6.13e-20 | 93.2 |
| Msa0170320 | MtrunA17_Chr4g0057551 | 25.000 | 412 | 228 | 17 | 110 | 453 | 198 | 596 | 1.68e-19 | 91.7 |
| Msa0170320 | MtrunA17_Chr3g0116091 | 23.095 | 420 | 226 | 14 | 110 | 473 | 35 | 413 | 3.69e-18 | 86.7 |
| Msa0170320 | MtrunA17_Chr4g0019081 | 33.945 | 109 | 63 | 4 | 99 | 199 | 63 | 170 | 7.45e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170320 | AT3G20500.1 | 68.943 | 454 | 124 | 1 | 34 | 487 | 1 | 437 | 0.0 | 677 |
| Msa0170320 | AT3G52820.1 | 64.054 | 370 | 132 | 1 | 99 | 467 | 49 | 418 | 1.81e-179 | 510 |
| Msa0170320 | AT3G52810.1 | 54.889 | 450 | 180 | 4 | 35 | 479 | 3 | 434 | 8.94e-171 | 488 |
| Msa0170320 | AT3G52780.1 | 54.955 | 444 | 173 | 9 | 36 | 472 | 2 | 425 | 2.07e-168 | 482 |
| Msa0170320 | AT3G52780.2 | 54.366 | 355 | 136 | 8 | 36 | 384 | 2 | 336 | 7.10e-128 | 376 |
| Msa0170320 | AT5G34850.1 | 40.241 | 415 | 218 | 8 | 99 | 484 | 56 | 469 | 6.61e-96 | 298 |
| Msa0170320 | AT4G36350.1 | 43.678 | 348 | 173 | 6 | 140 | 464 | 101 | 448 | 1.18e-90 | 284 |
| Msa0170320 | AT1G56360.1 | 41.206 | 398 | 201 | 10 | 99 | 464 | 52 | 448 | 1.22e-90 | 284 |
| Msa0170320 | AT3G07130.1 | 40.821 | 414 | 172 | 7 | 123 | 464 | 103 | 515 | 9.85e-88 | 279 |
| Msa0170320 | AT2G16430.2 | 38.190 | 453 | 240 | 13 | 39 | 464 | 13 | 452 | 1.96e-84 | 268 |
| Msa0170320 | AT2G27190.1 | 39.286 | 392 | 212 | 8 | 99 | 464 | 62 | 453 | 3.79e-83 | 265 |
| Msa0170320 | AT2G18130.1 | 40.103 | 389 | 195 | 8 | 99 | 464 | 56 | 429 | 4.91e-83 | 264 |
| Msa0170320 | AT3G07130.2 | 37.808 | 447 | 172 | 8 | 123 | 464 | 103 | 548 | 4.75e-81 | 262 |
| Msa0170320 | AT4G13700.1 | 38.747 | 431 | 203 | 12 | 36 | 410 | 4 | 429 | 3.10e-78 | 252 |
| Msa0170320 | AT2G16430.1 | 42.638 | 326 | 163 | 7 | 163 | 464 | 7 | 332 | 3.46e-76 | 243 |
| Msa0170320 | AT2G32770.3 | 36.524 | 397 | 178 | 6 | 142 | 464 | 138 | 534 | 1.69e-67 | 226 |
| Msa0170320 | AT4G13700.2 | 35.821 | 402 | 197 | 12 | 36 | 381 | 4 | 400 | 2.79e-60 | 203 |
| Msa0170320 | AT2G32770.2 | 35.580 | 371 | 165 | 6 | 142 | 438 | 57 | 427 | 2.89e-59 | 201 |
| Msa0170320 | AT3G46120.1 | 34.550 | 411 | 158 | 13 | 99 | 481 | 56 | 383 | 2.74e-57 | 195 |
| Msa0170320 | AT2G32770.1 | 32.242 | 397 | 166 | 7 | 142 | 464 | 138 | 505 | 7.36e-51 | 181 |
| Msa0170320 | AT1G52940.1 | 40.088 | 227 | 116 | 11 | 99 | 307 | 17 | 241 | 7.99e-33 | 125 |
| Msa0170320 | AT2G03450.1 | 26.269 | 453 | 255 | 14 | 99 | 477 | 145 | 592 | 1.61e-28 | 119 |
| Msa0170320 | AT1G13900.1 | 31.507 | 292 | 158 | 8 | 224 | 477 | 305 | 592 | 1.79e-27 | 116 |
| Msa0170320 | AT5G50400.2 | 26.923 | 260 | 160 | 8 | 218 | 453 | 255 | 508 | 8.28e-20 | 92.8 |
| Msa0170320 | AT5G50400.1 | 26.923 | 260 | 160 | 8 | 218 | 453 | 327 | 580 | 9.92e-20 | 92.8 |
| Msa0170320 | AT4G24890.1 | 27.381 | 252 | 149 | 9 | 218 | 444 | 331 | 573 | 2.77e-18 | 88.2 |
| Msa0170320 | AT1G13750.1 | 25.833 | 360 | 192 | 13 | 153 | 453 | 239 | 582 | 7.47e-18 | 87.0 |
Find 125 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCTTCATTTGTAGAATA+TGG | 0.176309 | 1_4:+54259610 | Msa0170320:CDS |
| ACTTTGGAATTGTTTGTAAA+TGG | 0.235980 | 1_4:+54261471 | Msa0170320:three_prime_UTR |
| CACCATCACCAATAGTTATA+TGG | 0.252632 | 1_4:-54260956 | None:intergenic |
| AAGATACACCATACTATAAT+TGG | 0.253086 | 1_4:+54259709 | Msa0170320:CDS |
| AGTAAAGCTAGTAATTTCTT+TGG | 0.259237 | 1_4:+54261501 | Msa0170320:three_prime_UTR |
| AGACATGACAGGAATCTATT+AGG | 0.271670 | 1_4:-54261357 | None:intergenic |
| CTGATTGTATGCAACATCTT+TGG | 0.275554 | 1_4:+54259935 | Msa0170320:CDS |
| CAGCTCACCATGACCAAAAC+TGG | 0.283751 | 1_4:-54261183 | None:intergenic |
| ATATGATGTTTACCTTCTTC+CGG | 0.295930 | 1_4:+54259897 | Msa0170320:CDS |
| CCAGCCACAGCAAAAGTAAT+TGG | 0.296149 | 1_4:-54259817 | None:intergenic |
| CAATTAAGGCCGATGATATC+TGG | 0.304317 | 1_4:+54261264 | Msa0170320:CDS |
| TAAACTCAACTCATGCCTTC+TGG | 0.320354 | 1_4:+54261213 | Msa0170320:CDS |
| GCCTATGAGCTAAGCCTTCT+CGG | 0.323237 | 1_4:-54260983 | None:intergenic |
| CCATACTATAATTGGACCTT+TGG | 0.333458 | 1_4:+54259717 | Msa0170320:CDS |
| TTTGCTGTGGCTGGAGATCT+TGG | 0.347787 | 1_4:+54259826 | Msa0170320:CDS |
| TATGATGTTTACCTTCTTCC+GGG | 0.355153 | 1_4:+54259898 | Msa0170320:CDS |
| GAATTCCGTGAAGCCAGTTT+TGG | 0.358064 | 1_4:+54261170 | Msa0170320:CDS |
| AAAGTAATTGGAAATTTAGA+TGG | 0.363207 | 1_4:-54259805 | None:intergenic |
| TTGTATCGTATAATTCTAGA+TGG | 0.365272 | 1_4:+54260061 | Msa0170320:CDS |
| AAGAATATGATGACATCATT+AGG | 0.369279 | 1_4:+54258459 | Msa0170320:five_prime_UTR |
| TGATAATGACGAGTCAATTA+AGG | 0.376333 | 1_4:+54261250 | Msa0170320:CDS |
| TGACAGAAACGCGTGTATAA+TGG | 0.379695 | 1_4:+54260909 | Msa0170320:intron |
| TGATATCTGGATAACCTCTT+TGG | 0.380204 | 1_4:+54261277 | Msa0170320:CDS |
| CCAAAGGTCCAATTATAGTA+TGG | 0.380796 | 1_4:-54259717 | None:intergenic |
| TATATATACTCTAAGGACTT+TGG | 0.385347 | 1_4:+54261455 | Msa0170320:three_prime_UTR |
| TGATTGTATGCAACATCTTT+GGG | 0.398477 | 1_4:+54259936 | Msa0170320:CDS |
| AGCGTTGATTTAGTTCTTGC+TGG | 0.416104 | 1_4:+54260777 | Msa0170320:CDS |
| CATGGTGATGTTGTCAAAGT+TGG | 0.417007 | 1_4:-54258561 | None:intergenic |
| CAACATCTTTGGGACTCGTT+TGG | 0.426824 | 1_4:+54259946 | Msa0170320:CDS |
| AATTCTGACCACTTTGGTTG+TGG | 0.430371 | 1_4:-54261152 | None:intergenic |
| GGTGTTCATGTTATCATGCT+AGG | 0.430528 | 1_4:+54260144 | Msa0170320:CDS |
| ATCCCAACCTTACCCTCAAC+AGG | 0.435642 | 1_4:+54258712 | Msa0170320:CDS |
| GCTGGAGATCTTGGTCAAAC+TGG | 0.435733 | 1_4:+54259835 | Msa0170320:CDS |
| GACATGACAGGAATCTATTA+GGG | 0.436711 | 1_4:-54261356 | None:intergenic |
| AGAATGGTTGTCTTGGTTTG+AGG | 0.438797 | 1_4:+54259500 | Msa0170320:intron |
| AGTTTGACCTGTTGAGGGTA+AGG | 0.448971 | 1_4:-54258719 | None:intergenic |
| CATGACCAAAACTGGCTTCA+CGG | 0.449213 | 1_4:-54261175 | None:intergenic |
| TGTCAAAGGTGGACAGGAAA+AGG | 0.453174 | 1_4:+54260643 | Msa0170320:CDS |
| ATGTTTGTCATCAGTTATCC+AGG | 0.471536 | 1_4:-54259587 | None:intergenic |
| GGCACCGTCCATATAACTAT+TGG | 0.473838 | 1_4:+54260948 | Msa0170320:CDS |
| AACAAGGCTCACCAAGGCGC+AGG | 0.474464 | 1_4:+54260711 | Msa0170320:CDS |
| GACCTGTTGAGGGTAAGGTT+GGG | 0.475250 | 1_4:-54258714 | None:intergenic |
| TGACCTGTTGAGGGTAAGGT+TGG | 0.482503 | 1_4:-54258715 | None:intergenic |
| ACCGAGAAGGCTTAGCTCAT+AGG | 0.485264 | 1_4:+54260982 | Msa0170320:CDS |
| ACGCGTGTATAATGGAAGAT+TGG | 0.486289 | 1_4:+54260917 | Msa0170320:CDS |
| AAAGAGAGTTTGACCTGTTG+AGG | 0.487017 | 1_4:-54258725 | None:intergenic |
| CAACTCATGCCTTCTGGAGT+TGG | 0.487313 | 1_4:+54261219 | Msa0170320:CDS |
| AAGAATGAATTTGAGTTCCA+TGG | 0.488430 | 1_4:-54258579 | None:intergenic |
| TCTAAGCAGAATGGTTGTCT+TGG | 0.489919 | 1_4:+54259493 | Msa0170320:intron |
| GTTGATCCACTTTCCTCAAA+CGG | 0.490751 | 1_4:-54260090 | None:intergenic |
| ACTTAAACATTCCATGGCCA+TGG | 0.491149 | 1_4:+54258681 | Msa0170320:CDS |
| TGTTCATGCTTATGAACGTT+CGG | 0.494726 | 1_4:+54260803 | Msa0170320:CDS |
| TAGATGGAAAATGCCGTTTG+AGG | 0.495189 | 1_4:+54260077 | Msa0170320:CDS |
| ATATAAAATATAATTATAAG+AGG | 0.502258 | 1_4:-54259677 | None:intergenic |
| GTTCCATATTCTACAAATGA+AGG | 0.509529 | 1_4:-54259613 | None:intergenic |
| TCATATCATCCCCTGCGCCT+TGG | 0.511346 | 1_4:-54260722 | None:intergenic |
| AAGAGAGTTTGACCTGTTGA+GGG | 0.512663 | 1_4:-54258724 | None:intergenic |
| ATTCCTGTCATGTCTGCTAC+AGG | 0.517606 | 1_4:+54261365 | Msa0170320:three_prime_UTR |
| AAGATCTGTCAAAGGTGGAC+AGG | 0.518140 | 1_4:+54260637 | Msa0170320:CDS |
| ATGAAAGATCACCCGGAAGA+AGG | 0.520658 | 1_4:-54259909 | None:intergenic |
| GGACTCGTTTGGTAGGCTTG+TGG | 0.525474 | 1_4:+54259957 | Msa0170320:CDS |
| CAGGTACATATATCTCTGGC+AGG | 0.528508 | 1_4:+54259544 | Msa0170320:CDS |
| CACGGCCTTGCACTAGCAAA+CGG | 0.529732 | 1_4:-54259982 | None:intergenic |
| TTTCCTTCTGTTACCATCCA+CGG | 0.529767 | 1_4:-54260000 | None:intergenic |
| ATGGTGATGTTGTCAAAGTT+GGG | 0.531195 | 1_4:-54258560 | None:intergenic |
| ATGCCTTCTGGAGTTGGCAT+AGG | 0.534697 | 1_4:+54261225 | Msa0170320:CDS |
| GAGATCTTGGTCAAACTGGT+TGG | 0.534730 | 1_4:+54259839 | Msa0170320:CDS |
| TCACGGAATTCTGACCACTT+TGG | 0.536302 | 1_4:-54261158 | None:intergenic |
| ATAAGAACAAACATGAGCTC+AGG | 0.537422 | 1_4:+54261318 | Msa0170320:CDS |
| GTAATTGGAAATTTAGATGG+AGG | 0.539372 | 1_4:-54259802 | None:intergenic |
| GTGTTCATGTTATCATGCTA+GGG | 0.541956 | 1_4:+54260145 | Msa0170320:CDS |
| CTTAAACATTCCATGGCCAT+GGG | 0.543217 | 1_4:+54258682 | Msa0170320:CDS |
| CATATAACTATTGGTGATGG+TGG | 0.543864 | 1_4:+54260957 | Msa0170320:CDS |
| ATAACCTCTTTGGTAAGCTC+AGG | 0.544896 | 1_4:+54261287 | Msa0170320:CDS |
| TGCTAGTGCAAGGCCGTGGA+TGG | 0.546368 | 1_4:+54259987 | Msa0170320:CDS |
| TGGAGCCGTTTGCTAGTGCA+AGG | 0.547738 | 1_4:+54259977 | Msa0170320:CDS |
| TGAAATAACACAAGCAGCCA+AGG | 0.549945 | 1_4:-54260669 | None:intergenic |
| GATTTAGAATCCCATGGCCA+TGG | 0.551935 | 1_4:-54258692 | None:intergenic |
| TACAGTAACTAGTGGAAGGA+AGG | 0.556578 | 1_4:-54258534 | None:intergenic |
| ATTATACGATACAAATTCAT+CGG | 0.559189 | 1_4:-54260052 | None:intergenic |
| AGAGCAATACAGATGGCTAA+AGG | 0.563220 | 1_4:+54260194 | Msa0170320:CDS |
| ACAAGGCTCACCAAGGCGCA+GGG | 0.565155 | 1_4:+54260712 | Msa0170320:CDS |
| TAAAATATAATTATAAGAGG+TGG | 0.567180 | 1_4:-54259674 | None:intergenic |
| ATAAAACATAAGATCAGAAG+TGG | 0.571378 | 1_4:+54258488 | Msa0170320:CDS |
| CGTTTGCTAGTGCAAGGCCG+TGG | 0.571538 | 1_4:+54259983 | Msa0170320:CDS |
| ATCTTTGGGACTCGTTTGGT+AGG | 0.580248 | 1_4:+54259950 | Msa0170320:CDS |
| ATGCCTGTAGCAGACATGAC+AGG | 0.581998 | 1_4:-54261368 | None:intergenic |
| AAAATGCCGTTTGAGGAAAG+TGG | 0.584130 | 1_4:+54260084 | Msa0170320:CDS |
| AACATATTGATCAGCAGTGA+CGG | 0.585626 | 1_4:-54258639 | None:intergenic |
| AACTAGTGGAAGGAAGGAAG+AGG | 0.597308 | 1_4:-54258528 | None:intergenic |
| GGTTGGGATTTAGAATCCCA+TGG | 0.602227 | 1_4:-54258698 | None:intergenic |
| GTCCATATAACTATTGGTGA+TGG | 0.602339 | 1_4:+54260954 | Msa0170320:CDS |
| GTAGAATATGGAACATTACC+TGG | 0.603088 | 1_4:+54259622 | Msa0170320:CDS |
| GGATGATATGATGACAGTCA+TGG | 0.603599 | 1_4:+54260734 | Msa0170320:CDS |
| TTGGGTATTACAGTAACTAG+TGG | 0.604113 | 1_4:-54258542 | None:intergenic |
| TACATGGTATTATATTCCAA+AGG | 0.607049 | 1_4:-54259733 | None:intergenic |
| ATTCCTATGCCAACTCCAGA+AGG | 0.608575 | 1_4:-54261228 | None:intergenic |
| GCATCCTGAGCTTACCAAAG+AGG | 0.609678 | 1_4:-54261291 | None:intergenic |
| GGTGATGGTGGAAACCGAGA+AGG | 0.616947 | 1_4:+54260969 | Msa0170320:CDS |
| AGATATGATTCAATATCTGA+AGG | 0.617637 | 1_4:+54259646 | Msa0170320:CDS |
| AGAGGTTATCCAGATATCAT+CGG | 0.619399 | 1_4:-54261273 | None:intergenic |
| TCAGCATATGAAAGATCACC+CGG | 0.620769 | 1_4:-54259916 | None:intergenic |
| AACAGAAGGAAATCATGAAG+AGG | 0.625469 | 1_4:+54260011 | Msa0170320:CDS |
| TGGACAGGAAAAGGACACCT+TGG | 0.626483 | 1_4:+54260652 | Msa0170320:CDS |
| ACGCTGGCAGCATAAAGCAA+TGG | 0.627780 | 1_4:-54260759 | None:intergenic |
| ACAAATTCATCGGTTAACAA+TGG | 0.636241 | 1_4:-54260042 | None:intergenic |
| TCTACAGGAAGATCTGTCAA+AGG | 0.636721 | 1_4:+54260629 | Msa0170320:intron |
| ACAGACACATGAGAATAACC+TGG | 0.637151 | 1_4:+54259569 | Msa0170320:CDS |
| ACAGGAAGATCTGTCAAAGG+TGG | 0.639546 | 1_4:+54260632 | Msa0170320:intron |
| AGCAAGAACTAAATCAACGC+TGG | 0.641446 | 1_4:-54260775 | None:intergenic |
| TTGTGTTATTTCATGTGCCG+TGG | 0.647579 | 1_4:+54260679 | Msa0170320:CDS |
| TGGTTGGACTAAATCAACAT+TGG | 0.647792 | 1_4:+54259855 | Msa0170320:CDS |
| ATCACCAATAGTTATATGGA+CGG | 0.650019 | 1_4:-54260952 | None:intergenic |
| AATGGAAGATTGGATCCTTG+TGG | 0.651657 | 1_4:+54260927 | Msa0170320:CDS |
| AGGCCGTGGATGGTAACAGA+AGG | 0.651742 | 1_4:+54259997 | Msa0170320:CDS |
| GATATTGAATCATATCTACC+AGG | 0.651988 | 1_4:-54259640 | None:intergenic |
| ACATATATCCACAACCAAAG+TGG | 0.656207 | 1_4:+54261144 | Msa0170320:CDS |
| CAAGGCTCACCAAGGCGCAG+GGG | 0.658372 | 1_4:+54260713 | Msa0170320:CDS |
| GTTATATGGACGGTGCCACA+AGG | 0.660432 | 1_4:-54260942 | None:intergenic |
| GTATTACAGTAACTAGTGGA+AGG | 0.664352 | 1_4:-54258538 | None:intergenic |
| CAACTTTGACAACATCACCA+TGG | 0.667387 | 1_4:+54258562 | Msa0170320:CDS |
| AGTACTCAGAGCAATACAGA+TGG | 0.679754 | 1_4:+54260187 | Msa0170320:CDS |
| AATAGTAACAAGGCTCACCA+AGG | 0.684934 | 1_4:+54260705 | Msa0170320:CDS |
| GCCTTGTTACTATTATACCA+CGG | 0.702987 | 1_4:-54260696 | None:intergenic |
| GCCGTGGTATAATAGTAACA+AGG | 0.710352 | 1_4:+54260695 | Msa0170320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTTTTTTTTTGATTC+TGG | + | chr1_4:54258805-54258824 | Msa0170320:intron | 10.0% |
| !!! | AAAAAATCTCATATTTTTTT+TGG | - | chr1_4:54259041-54259060 | None:intergenic | 10.0% |
| !! | TTATGTATGTTTATTTATTT+AGG | + | chr1_4:54259166-54259185 | Msa0170320:intron | 10.0% |
| !! | TATGTATGTTTATTTATTTA+GGG | + | chr1_4:54259167-54259186 | Msa0170320:intron | 10.0% |
| !! | TTTAATTGCTTGTATTATTA+GGG | + | chr1_4:54258870-54258889 | Msa0170320:intron | 15.0% |
| !! | TAAAATATAATTATAAGAGG+TGG | - | chr1_4:54259677-54259696 | None:intergenic | 15.0% |
| !!! | AATTATATTTTATATAGCTC+AGG | + | chr1_4:54259685-54259704 | Msa0170320:CDS | 15.0% |
| !!! | TAAAAATTTGTTATCTGAAT+TGG | + | chr1_4:54261032-54261051 | Msa0170320:intron | 15.0% |
| !! | GTTTAATTGCTTGTATTATT+AGG | + | chr1_4:54258869-54258888 | Msa0170320:intron | 20.0% |
| !! | TTAATTGCTTGTATTATTAG+GGG | + | chr1_4:54258871-54258890 | Msa0170320:intron | 20.0% |
| !!! | CTAAGAATCTGAAATTTAAT+AGG | - | chr1_4:54259219-54259238 | None:intergenic | 20.0% |
| !!! | GAAATTCATATAACTACTTT+TGG | - | chr1_4:54259293-54259312 | None:intergenic | 20.0% |
| !! | AAAGTAATTGGAAATTTAGA+TGG | - | chr1_4:54259808-54259827 | None:intergenic | 20.0% |
| !! | ATTATACGATACAAATTCAT+CGG | - | chr1_4:54260055-54260074 | None:intergenic | 20.0% |
| !! | ATTACACTTATGGAAATATA+CGG | - | chr1_4:54260231-54260250 | None:intergenic | 20.0% |
| !! | TATATTTCCATAAGTGTAAT+GGG | + | chr1_4:54260231-54260250 | Msa0170320:intron | 20.0% |
| !! | AACTTATATGAAAAACAGTT+TGG | - | chr1_4:54260382-54260401 | None:intergenic | 20.0% |
| !!! | TTGTAAATGTTTCTAAAGAA+CGG | - | chr1_4:54260592-54260611 | None:intergenic | 20.0% |
| !! | AATAAAGGCTAAACTATAAA+AGG | - | chr1_4:54260833-54260852 | None:intergenic | 20.0% |
| !! | GTGCTTAGAAATTAAAATAA+AGG | - | chr1_4:54260848-54260867 | None:intergenic | 20.0% |
| !!! | AAATTTTTATAATGTGTCTC+TGG | - | chr1_4:54261021-54261040 | None:intergenic | 20.0% |
| !! | AAACAACCTTAATAGTTATA+TGG | - | chr1_4:54261076-54261095 | None:intergenic | 20.0% |
| !! | TAACTATTAAGGTTGTTTAT+TGG | + | chr1_4:54261078-54261097 | Msa0170320:intron | 20.0% |
| !!! | CTTTTTGTATATATACTCTA+AGG | + | chr1_4:54261448-54261467 | Msa0170320:three_prime_UTR | 20.0% |
| ! | AAGAATATGATGACATCATT+AGG | + | chr1_4:54258459-54258478 | Msa0170320:five_prime_UTR | 25.0% |
| ! | ATAAAACATAAGATCAGAAG+TGG | + | chr1_4:54258488-54258507 | Msa0170320:CDS | 25.0% |
| !!! | TTAAGTTTTTTCTTGGCAAA+GGG | - | chr1_4:54258667-54258686 | None:intergenic | 25.0% |
| !!! | TTTAAGTTTTTTCTTGGCAA+AGG | - | chr1_4:54258668-54258687 | None:intergenic | 25.0% |
| !!! | GGAATGTTTAAGTTTTTTCT+TGG | - | chr1_4:54258674-54258693 | None:intergenic | 25.0% |
| ! | GAAAAAACTTAAACATTCCA+TGG | + | chr1_4:54258675-54258694 | Msa0170320:CDS | 25.0% |
| !!! | AGAGTAGTTCTATTTCTATA+GGG | - | chr1_4:54258848-54258867 | None:intergenic | 25.0% |
| !!! | AAGAGTAGTTCTATTTCTAT+AGG | - | chr1_4:54258849-54258868 | None:intergenic | 25.0% |
| ! | ACCTATTAAATTTCAGATTC+TGG | + | chr1_4:54259191-54259210 | Msa0170320:intron | 25.0% |
| !! | ACCAGAATCTGAAATTTAAT+AGG | - | chr1_4:54259195-54259214 | None:intergenic | 25.0% |
| ! | AGATATGATTCAATATCTGA+AGG | + | chr1_4:54259646-54259665 | Msa0170320:CDS | 25.0% |
| ! | AAGATACACCATACTATAAT+TGG | + | chr1_4:54259709-54259728 | Msa0170320:CDS | 25.0% |
| ! | TACATGGTATTATATTCCAA+AGG | - | chr1_4:54259736-54259755 | None:intergenic | 25.0% |
| !!! | ACCATGTATTTTTATCAATG+TGG | + | chr1_4:54259748-54259767 | Msa0170320:CDS | 25.0% |
| !!! | ATGTATTTTTATCAATGTGG+CGG | + | chr1_4:54259751-54259770 | Msa0170320:CDS | 25.0% |
| ! | TTGTATCGTATAATTCTAGA+TGG | + | chr1_4:54260061-54260080 | Msa0170320:CDS | 25.0% |
| !!! | TATTATTCTTTTGAAGTTGC+AGG | + | chr1_4:54260123-54260142 | Msa0170320:CDS | 25.0% |
| ! | GTATATTTCCATAAGTGTAA+TGG | + | chr1_4:54260230-54260249 | Msa0170320:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1_4:54260293-54260312 | None:intergenic | 25.0% |
| ! | ATCTGTCCATATAACTATTA+AGG | + | chr1_4:54261067-54261086 | Msa0170320:intron | 25.0% |
| !! | TATATATACTCTAAGGACTT+TGG | + | chr1_4:54261455-54261474 | Msa0170320:three_prime_UTR | 25.0% |
| !!! | ACTTTGGAATTGTTTGTAAA+TGG | + | chr1_4:54261471-54261490 | Msa0170320:three_prime_UTR | 25.0% |
| ! | AGTAAAGCTAGTAATTTCTT+TGG | + | chr1_4:54261501-54261520 | Msa0170320:three_prime_UTR | 25.0% |
| ! | AAGAATGAATTTGAGTTCCA+TGG | - | chr1_4:54258582-54258601 | None:intergenic | 30.0% |
| TTAGACTACAAAATTCTGAG+TGG | + | chr1_4:54259235-54259254 | Msa0170320:intron | 30.0% | |
| TGAAATGCTGGAATTATGTT+TGG | - | chr1_4:54259410-54259429 | None:intergenic | 30.0% | |
| ! | AGTGTCTATATTTGAAATGC+TGG | - | chr1_4:54259422-54259441 | None:intergenic | 30.0% |
| TTCTATACATCTAAGCAGAA+TGG | + | chr1_4:54259484-54259503 | Msa0170320:intron | 30.0% | |
| !!! | TGACAGAGTTTTGATTTTTC+AGG | + | chr1_4:54259525-54259544 | Msa0170320:CDS | 30.0% |
| !!! | TTTTCAGGTACATATATCTC+TGG | + | chr1_4:54259540-54259559 | Msa0170320:CDS | 30.0% |
| TCACCTTCATTTGTAGAATA+TGG | + | chr1_4:54259610-54259629 | Msa0170320:CDS | 30.0% | |
| GTTCCATATTCTACAAATGA+AGG | - | chr1_4:54259616-54259635 | None:intergenic | 30.0% | |
| GATATTGAATCATATCTACC+AGG | - | chr1_4:54259643-54259662 | None:intergenic | 30.0% | |
| GCCACATTGATAAAAATACA+TGG | - | chr1_4:54259752-54259771 | None:intergenic | 30.0% | |
| GTAATTGGAAATTTAGATGG+AGG | - | chr1_4:54259805-54259824 | None:intergenic | 30.0% | |
| !! | ATTTCCAATTACTTTTGCTG+TGG | + | chr1_4:54259813-54259832 | Msa0170320:CDS | 30.0% |
| ATATGATGTTTACCTTCTTC+CGG | + | chr1_4:54259897-54259916 | Msa0170320:CDS | 30.0% | |
| TGATTGTATGCAACATCTTT+GGG | + | chr1_4:54259936-54259955 | Msa0170320:CDS | 30.0% | |
| ! | ACAAATTCATCGGTTAACAA+TGG | - | chr1_4:54260045-54260064 | None:intergenic | 30.0% |
| TCATATAAGTGCTTATGTGT+GGG | + | chr1_4:54260334-54260353 | Msa0170320:intron | 30.0% | |
| TTGTTATCAAATGCCTGTTT+GGG | - | chr1_4:54260546-54260565 | None:intergenic | 30.0% | |
| ! | TTTGTTATCAAATGCCTGTT+TGG | - | chr1_4:54260547-54260566 | None:intergenic | 30.0% |
| TTTCTTCATTTCTCATCTAC+AGG | + | chr1_4:54260614-54260633 | Msa0170320:intron | 30.0% | |
| AATTTCTAAGCACGATTCAA+TGG | + | chr1_4:54260855-54260874 | Msa0170320:intron | 30.0% | |
| !! | AATGGAAATTTGGTCTTAAG+TGG | + | chr1_4:54260873-54260892 | Msa0170320:intron | 30.0% |
| ATCACCAATAGTTATATGGA+CGG | - | chr1_4:54260955-54260974 | None:intergenic | 30.0% | |
| CAACAATGATGTAAGAATAC+AGG | - | chr1_4:54261115-54261134 | None:intergenic | 30.0% | |
| !! | CTTACATCATTGTTGTTTAC+AGG | + | chr1_4:54261120-54261139 | Msa0170320:intron | 30.0% |
| ! | TGATAATGACGAGTCAATTA+AGG | + | chr1_4:54261250-54261269 | Msa0170320:CDS | 30.0% |
| GTATTACAGTAACTAGTGGA+AGG | - | chr1_4:54258541-54258560 | None:intergenic | 35.0% | |
| TTGGGTATTACAGTAACTAG+TGG | - | chr1_4:54258545-54258564 | None:intergenic | 35.0% | |
| ! | ATGGTGATGTTGTCAAAGTT+GGG | - | chr1_4:54258563-54258582 | None:intergenic | 35.0% |
| AACATATTGATCAGCAGTGA+CGG | - | chr1_4:54258642-54258661 | None:intergenic | 35.0% | |
| CATTAAAATGCGTGTTAGCT+GGG | - | chr1_4:54258995-54259014 | None:intergenic | 35.0% | |
| TCATTAAAATGCGTGTTAGC+TGG | - | chr1_4:54258996-54259015 | None:intergenic | 35.0% | |
| AAATCCAAACACGAACAGAT+AGG | + | chr1_4:54259447-54259466 | Msa0170320:intron | 35.0% | |
| ATGTTTGTCATCAGTTATCC+AGG | - | chr1_4:54259590-54259609 | None:intergenic | 35.0% | |
| GTAGAATATGGAACATTACC+TGG | + | chr1_4:54259622-54259641 | Msa0170320:CDS | 35.0% | |
| CCAAAGGTCCAATTATAGTA+TGG | - | chr1_4:54259720-54259739 | None:intergenic | 35.0% | |
| CCATACTATAATTGGACCTT+TGG | + | chr1_4:54259717-54259736 | Msa0170320:CDS | 35.0% | |
| TGGTTGGACTAAATCAACAT+TGG | + | chr1_4:54259855-54259874 | Msa0170320:CDS | 35.0% | |
| TATGATGTTTACCTTCTTCC+GGG | + | chr1_4:54259898-54259917 | Msa0170320:CDS | 35.0% | |
| CTGATTGTATGCAACATCTT+TGG | + | chr1_4:54259935-54259954 | Msa0170320:CDS | 35.0% | |
| AACAGAAGGAAATCATGAAG+AGG | + | chr1_4:54260011-54260030 | Msa0170320:CDS | 35.0% | |
| GTGTTCATGTTATCATGCTA+GGG | + | chr1_4:54260145-54260164 | Msa0170320:CDS | 35.0% | |
| ATCCATCATACATGTGCTAA+AGG | + | chr1_4:54260254-54260273 | Msa0170320:intron | 35.0% | |
| AACCTTTAGCACATGTATGA+TGG | - | chr1_4:54260259-54260278 | None:intergenic | 35.0% | |
| ATGTGCTAAAGGTTTAGACT+AGG | + | chr1_4:54260265-54260284 | Msa0170320:intron | 35.0% | |
| TGTGCTAAAGGTTTAGACTA+GGG | + | chr1_4:54260266-54260285 | Msa0170320:intron | 35.0% | |
| CACATAAGCACTTATATGAC+AGG | - | chr1_4:54260333-54260352 | None:intergenic | 35.0% | |
| GTCATATAAGTGCTTATGTG+TGG | + | chr1_4:54260333-54260352 | Msa0170320:intron | 35.0% | |
| AAGCTAACTTGAAGAGCTTA+TGG | + | chr1_4:54260417-54260436 | Msa0170320:intron | 35.0% | |
| AGACTGTTTGGTAGAGTTTA+TGG | - | chr1_4:54260483-54260502 | None:intergenic | 35.0% | |
| TAAACACTAGTGAGACTGTT+TGG | - | chr1_4:54260495-54260514 | None:intergenic | 35.0% | |
| TCAAATAAGTCAACCCAAAC+AGG | + | chr1_4:54260530-54260549 | Msa0170320:intron | 35.0% | |
| ! | CAGGCATTTGATAACAAACA+TGG | + | chr1_4:54260549-54260568 | Msa0170320:intron | 35.0% |
| ! | GCCTTGTTACTATTATACCA+CGG | - | chr1_4:54260699-54260718 | None:intergenic | 35.0% |
| TGTTCATGCTTATGAACGTT+CGG | + | chr1_4:54260803-54260822 | Msa0170320:CDS | 35.0% | |
| AGCACGATTCAATGGAAATT+TGG | + | chr1_4:54260863-54260882 | Msa0170320:intron | 35.0% | |
| GTCCATATAACTATTGGTGA+TGG | + | chr1_4:54260954-54260973 | Msa0170320:CDS | 35.0% | |
| CACCATCACCAATAGTTATA+TGG | - | chr1_4:54260959-54260978 | None:intergenic | 35.0% | |
| !! | CATATAACTATTGGTGATGG+TGG | + | chr1_4:54260957-54260976 | Msa0170320:CDS | 35.0% |
| ACATATATCCACAACCAAAG+TGG | + | chr1_4:54261144-54261163 | Msa0170320:CDS | 35.0% | |
| AGAGGTTATCCAGATATCAT+CGG | - | chr1_4:54261276-54261295 | None:intergenic | 35.0% | |
| TGATATCTGGATAACCTCTT+TGG | + | chr1_4:54261277-54261296 | Msa0170320:CDS | 35.0% | |
| ATAAGAACAAACATGAGCTC+AGG | + | chr1_4:54261318-54261337 | Msa0170320:CDS | 35.0% | |
| GACATGACAGGAATCTATTA+GGG | - | chr1_4:54261359-54261378 | None:intergenic | 35.0% | |
| AGACATGACAGGAATCTATT+AGG | - | chr1_4:54261360-54261379 | None:intergenic | 35.0% | |
| TACAGTAACTAGTGGAAGGA+AGG | - | chr1_4:54258537-54258556 | None:intergenic | 40.0% | |
| ! | CATGGTGATGTTGTCAAAGT+TGG | - | chr1_4:54258564-54258583 | None:intergenic | 40.0% |
| CAACTTTGACAACATCACCA+TGG | + | chr1_4:54258562-54258581 | Msa0170320:CDS | 40.0% | |
| ACTTAAACATTCCATGGCCA+TGG | + | chr1_4:54258681-54258700 | Msa0170320:CDS | 40.0% | |
| CTTAAACATTCCATGGCCAT+GGG | + | chr1_4:54258682-54258701 | Msa0170320:CDS | 40.0% | |
| AAGAGAGTTTGACCTGTTGA+GGG | - | chr1_4:54258727-54258746 | None:intergenic | 40.0% | |
| AAAGAGAGTTTGACCTGTTG+AGG | - | chr1_4:54258728-54258747 | None:intergenic | 40.0% | |
| AATGCCTATCTGTTCGTGTT+TGG | - | chr1_4:54259454-54259473 | None:intergenic | 40.0% | |
| ACACGAACAGATAGGCATTA+TGG | + | chr1_4:54259455-54259474 | Msa0170320:intron | 40.0% | |
| CACGAACAGATAGGCATTAT+GGG | + | chr1_4:54259456-54259475 | Msa0170320:intron | 40.0% | |
| TCTAAGCAGAATGGTTGTCT+TGG | + | chr1_4:54259493-54259512 | Msa0170320:intron | 40.0% | |
| ! | AGAATGGTTGTCTTGGTTTG+AGG | + | chr1_4:54259500-54259519 | Msa0170320:intron | 40.0% |
| ACAGACACATGAGAATAACC+TGG | + | chr1_4:54259569-54259588 | Msa0170320:CDS | 40.0% | |
| !!! | TTTTATCAATGTGGCGGACA+AGG | + | chr1_4:54259757-54259776 | Msa0170320:CDS | 40.0% |
| !!! | AGGAGTTTTGAGCTTGAACT+CGG | - | chr1_4:54259785-54259804 | None:intergenic | 40.0% |
| TCAGCATATGAAAGATCACC+CGG | - | chr1_4:54259919-54259938 | None:intergenic | 40.0% | |
| TTTCCTTCTGTTACCATCCA+CGG | - | chr1_4:54260003-54260022 | None:intergenic | 40.0% | |
| ! | TAGATGGAAAATGCCGTTTG+AGG | + | chr1_4:54260077-54260096 | Msa0170320:CDS | 40.0% |
| ! | AAAATGCCGTTTGAGGAAAG+TGG | + | chr1_4:54260084-54260103 | Msa0170320:CDS | 40.0% |
| GTTGATCCACTTTCCTCAAA+CGG | - | chr1_4:54260093-54260112 | None:intergenic | 40.0% | |
| GGTGTTCATGTTATCATGCT+AGG | + | chr1_4:54260144-54260163 | Msa0170320:CDS | 40.0% | |
| AGTACTCAGAGCAATACAGA+TGG | + | chr1_4:54260187-54260206 | Msa0170320:CDS | 40.0% | |
| AGAGCAATACAGATGGCTAA+AGG | + | chr1_4:54260194-54260213 | Msa0170320:CDS | 40.0% | |
| GATGGATCCCATTACACTTA+TGG | - | chr1_4:54260241-54260260 | None:intergenic | 40.0% | |
| TCTACAGGAAGATCTGTCAA+AGG | + | chr1_4:54260629-54260648 | Msa0170320:intron | 40.0% | |
| TGAAATAACACAAGCAGCCA+AGG | - | chr1_4:54260672-54260691 | None:intergenic | 40.0% | |
| !! | TTGTGTTATTTCATGTGCCG+TGG | + | chr1_4:54260679-54260698 | Msa0170320:CDS | 40.0% |
| GCCGTGGTATAATAGTAACA+AGG | + | chr1_4:54260695-54260714 | Msa0170320:CDS | 40.0% | |
| AATAGTAACAAGGCTCACCA+AGG | + | chr1_4:54260705-54260724 | Msa0170320:CDS | 40.0% | |
| GGATGATATGATGACAGTCA+TGG | + | chr1_4:54260734-54260753 | Msa0170320:CDS | 40.0% | |
| AGCAAGAACTAAATCAACGC+TGG | - | chr1_4:54260778-54260797 | None:intergenic | 40.0% | |
| !! | AGCGTTGATTTAGTTCTTGC+TGG | + | chr1_4:54260777-54260796 | Msa0170320:CDS | 40.0% |
| TGACAGAAACGCGTGTATAA+TGG | + | chr1_4:54260909-54260928 | Msa0170320:intron | 40.0% | |
| ! | ACGCGTGTATAATGGAAGAT+TGG | + | chr1_4:54260917-54260936 | Msa0170320:CDS | 40.0% |
| AATGGAAGATTGGATCCTTG+TGG | + | chr1_4:54260927-54260946 | Msa0170320:CDS | 40.0% | |
| AATTCTGACCACTTTGGTTG+TGG | - | chr1_4:54261155-54261174 | None:intergenic | 40.0% | |
| TAAACTCAACTCATGCCTTC+TGG | + | chr1_4:54261213-54261232 | Msa0170320:CDS | 40.0% | |
| CAATTAAGGCCGATGATATC+TGG | + | chr1_4:54261264-54261283 | Msa0170320:CDS | 40.0% | |
| ATAACCTCTTTGGTAAGCTC+AGG | + | chr1_4:54261287-54261306 | Msa0170320:CDS | 40.0% | |
| AACTAGTGGAAGGAAGGAAG+AGG | - | chr1_4:54258531-54258550 | None:intergenic | 45.0% | |
| ! | GATTTAGAATCCCATGGCCA+TGG | - | chr1_4:54258695-54258714 | None:intergenic | 45.0% |
| ! | GGTTGGGATTTAGAATCCCA+TGG | - | chr1_4:54258701-54258720 | None:intergenic | 45.0% |
| AGTTTGACCTGTTGAGGGTA+AGG | - | chr1_4:54258722-54258741 | None:intergenic | 45.0% | |
| CAGGTACATATATCTCTGGC+AGG | + | chr1_4:54259544-54259563 | Msa0170320:CDS | 45.0% | |
| !!! | GGAGTTTTGAGCTTGAACTC+GGG | - | chr1_4:54259784-54259803 | None:intergenic | 45.0% |
| CCAGCCACAGCAAAAGTAAT+TGG | - | chr1_4:54259820-54259839 | None:intergenic | 45.0% | |
| !! | CCAATTACTTTTGCTGTGGC+TGG | + | chr1_4:54259817-54259836 | Msa0170320:CDS | 45.0% |
| GAGATCTTGGTCAAACTGGT+TGG | + | chr1_4:54259839-54259858 | Msa0170320:CDS | 45.0% | |
| ATGAAAGATCACCCGGAAGA+AGG | - | chr1_4:54259912-54259931 | None:intergenic | 45.0% | |
| !! | CAACATCTTTGGGACTCGTT+TGG | + | chr1_4:54259946-54259965 | Msa0170320:CDS | 45.0% |
| !! | ATCTTTGGGACTCGTTTGGT+AGG | + | chr1_4:54259950-54259969 | Msa0170320:CDS | 45.0% |
| GTTTAGACTAGGGTCCTGTT+TGG | + | chr1_4:54260276-54260295 | Msa0170320:intron | 45.0% | |
| ACAGGAAGATCTGTCAAAGG+TGG | + | chr1_4:54260632-54260651 | Msa0170320:intron | 45.0% | |
| AAGATCTGTCAAAGGTGGAC+AGG | + | chr1_4:54260637-54260656 | Msa0170320:CDS | 45.0% | |
| TGTCAAAGGTGGACAGGAAA+AGG | + | chr1_4:54260643-54260662 | Msa0170320:CDS | 45.0% | |
| GGCACCGTCCATATAACTAT+TGG | + | chr1_4:54260948-54260967 | Msa0170320:CDS | 45.0% | |
| TCACGGAATTCTGACCACTT+TGG | - | chr1_4:54261161-54261180 | None:intergenic | 45.0% | |
| ! | GAATTCCGTGAAGCCAGTTT+TGG | + | chr1_4:54261170-54261189 | Msa0170320:CDS | 45.0% |
| ! | CATGACCAAAACTGGCTTCA+CGG | - | chr1_4:54261178-54261197 | None:intergenic | 45.0% |
| ATTCCTATGCCAACTCCAGA+AGG | - | chr1_4:54261231-54261250 | None:intergenic | 45.0% | |
| ATTCCTGTCATGTCTGCTAC+AGG | + | chr1_4:54261365-54261384 | Msa0170320:three_prime_UTR | 45.0% | |
| !!! | TTAAAAAAGTAATTTTTTTA+AGG | - | chr1_4:54258966-54258985 | None:intergenic | 5.0% |
| !! | TTTATTATTTATCTTATTAT+AGG | - | chr1_4:54259083-54259102 | None:intergenic | 5.0% |
| !! | ATATAAAATATAATTATAAG+AGG | - | chr1_4:54259680-54259699 | None:intergenic | 5.0% |
| ATCCCAACCTTACCCTCAAC+AGG | + | chr1_4:54258712-54258731 | Msa0170320:CDS | 50.0% | |
| GACCTGTTGAGGGTAAGGTT+GGG | - | chr1_4:54258717-54258736 | None:intergenic | 50.0% | |
| TGACCTGTTGAGGGTAAGGT+TGG | - | chr1_4:54258718-54258737 | None:intergenic | 50.0% | |
| ! | TTTGCTGTGGCTGGAGATCT+TGG | + | chr1_4:54259826-54259845 | Msa0170320:CDS | 50.0% |
| GCTGGAGATCTTGGTCAAAC+TGG | + | chr1_4:54259835-54259854 | Msa0170320:CDS | 50.0% | |
| TGGACAGGAAAAGGACACCT+TGG | + | chr1_4:54260652-54260671 | Msa0170320:CDS | 50.0% | |
| ACGCTGGCAGCATAAAGCAA+TGG | - | chr1_4:54260762-54260781 | None:intergenic | 50.0% | |
| !! | GTTATATGGACGGTGCCACA+AGG | - | chr1_4:54260945-54260964 | None:intergenic | 50.0% |
| ACCGAGAAGGCTTAGCTCAT+AGG | + | chr1_4:54260982-54261001 | Msa0170320:CDS | 50.0% | |
| GCCTATGAGCTAAGCCTTCT+CGG | - | chr1_4:54260986-54261005 | None:intergenic | 50.0% | |
| !! | CGTGAAGCCAGTTTTGGTCA+TGG | + | chr1_4:54261176-54261195 | Msa0170320:CDS | 50.0% |
| CAGCTCACCATGACCAAAAC+TGG | - | chr1_4:54261186-54261205 | None:intergenic | 50.0% | |
| !! | CAACTCATGCCTTCTGGAGT+TGG | + | chr1_4:54261219-54261238 | Msa0170320:CDS | 50.0% |
| !! | ATGCCTTCTGGAGTTGGCAT+AGG | + | chr1_4:54261225-54261244 | Msa0170320:CDS | 50.0% |
| GCATCCTGAGCTTACCAAAG+AGG | - | chr1_4:54261294-54261313 | None:intergenic | 50.0% | |
| ATGCCTGTAGCAGACATGAC+AGG | - | chr1_4:54261371-54261390 | None:intergenic | 50.0% | |
| GGACTCGTTTGGTAGGCTTG+TGG | + | chr1_4:54259957-54259976 | Msa0170320:CDS | 55.0% | |
| ! | TGGAGCCGTTTGCTAGTGCA+AGG | + | chr1_4:54259977-54259996 | Msa0170320:CDS | 55.0% |
| CACGGCCTTGCACTAGCAAA+CGG | - | chr1_4:54259985-54260004 | None:intergenic | 55.0% | |
| AGGCCGTGGATGGTAACAGA+AGG | + | chr1_4:54259997-54260016 | Msa0170320:CDS | 55.0% | |
| TCATATCATCCCCTGCGCCT+TGG | - | chr1_4:54260725-54260744 | None:intergenic | 55.0% | |
| !! | GGTGATGGTGGAAACCGAGA+AGG | + | chr1_4:54260969-54260988 | Msa0170320:CDS | 55.0% |
| ! | CGTTTGCTAGTGCAAGGCCG+TGG | + | chr1_4:54259983-54260002 | Msa0170320:CDS | 60.0% |
| TGCTAGTGCAAGGCCGTGGA+TGG | + | chr1_4:54259987-54260006 | Msa0170320:CDS | 60.0% | |
| AACAAGGCTCACCAAGGCGC+AGG | + | chr1_4:54260711-54260730 | Msa0170320:CDS | 60.0% | |
| ACAAGGCTCACCAAGGCGCA+GGG | + | chr1_4:54260712-54260731 | Msa0170320:CDS | 60.0% | |
| CAAGGCTCACCAAGGCGCAG+GGG | + | chr1_4:54260713-54260732 | Msa0170320:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 54258459 | 54261570 | 54258459 | ID=Msa0170320;Name=Msa0170320 |
| chr1_4 | mRNA | 54258459 | 54261570 | 54258459 | ID=Msa0170320-mRNA-1;Parent=Msa0170320;Name=Msa0170320-mRNA-1;_AED=0.08;_eAED=0.08;_QI=23|0.75|0.8|1|1|1|5|209|487 |
| chr1_4 | exon | 54258459 | 54258733 | 54258459 | ID=Msa0170320-mRNA-1:exon:16170;Parent=Msa0170320-mRNA-1 |
| chr1_4 | exon | 54259502 | 54260215 | 54259502 | ID=Msa0170320-mRNA-1:exon:16171;Parent=Msa0170320-mRNA-1 |
| chr1_4 | exon | 54260636 | 54260824 | 54260636 | ID=Msa0170320-mRNA-1:exon:16172;Parent=Msa0170320-mRNA-1 |
| chr1_4 | exon | 54260915 | 54261003 | 54260915 | ID=Msa0170320-mRNA-1:exon:16173;Parent=Msa0170320-mRNA-1 |
| chr1_4 | exon | 54261142 | 54261570 | 54261142 | ID=Msa0170320-mRNA-1:exon:16174;Parent=Msa0170320-mRNA-1 |
| chr1_4 | five_prime_UTR | 54258459 | 54258481 | 54258459 | ID=Msa0170320-mRNA-1:five_prime_utr;Parent=Msa0170320-mRNA-1 |
| chr1_4 | CDS | 54258482 | 54258733 | 54258482 | ID=Msa0170320-mRNA-1:cds;Parent=Msa0170320-mRNA-1 |
| chr1_4 | CDS | 54259502 | 54260215 | 54259502 | ID=Msa0170320-mRNA-1:cds;Parent=Msa0170320-mRNA-1 |
| chr1_4 | CDS | 54260636 | 54260824 | 54260636 | ID=Msa0170320-mRNA-1:cds;Parent=Msa0170320-mRNA-1 |
| chr1_4 | CDS | 54260915 | 54261003 | 54260915 | ID=Msa0170320-mRNA-1:cds;Parent=Msa0170320-mRNA-1 |
| chr1_4 | CDS | 54261142 | 54261361 | 54261142 | ID=Msa0170320-mRNA-1:cds;Parent=Msa0170320-mRNA-1 |
| chr1_4 | three_prime_UTR | 54261362 | 54261570 | 54261362 | ID=Msa0170320-mRNA-1:three_prime_utr;Parent=Msa0170320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
