Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108820 | sp|P47927|AP2_ARATH | 76.136 | 88 | 21 | 0 | 79 | 166 | 158 | 245 | 5.59e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108820 | A0A396IVJ2 | 89.610 | 77 | 8 | 0 | 90 | 166 | 47 | 123 | 2.93e-41 | 146 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108820 | Msa0662450 | 0.803225 | 3.858737e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108820 | MtrunA17_Chr3g0126151 | 89.610 | 77 | 8 | 0 | 90 | 166 | 47 | 123 | 5.64e-45 | 146 |
| Msa0108820 | MtrunA17_Chr4g0030191 | 86.364 | 88 | 12 | 0 | 79 | 166 | 158 | 245 | 1.04e-37 | 136 |
| Msa0108820 | MtrunA17_Chr7g0263581 | 73.864 | 88 | 23 | 0 | 79 | 166 | 166 | 253 | 8.05e-30 | 114 |
| Msa0108820 | MtrunA17_Chr4g0053181 | 73.864 | 88 | 23 | 0 | 79 | 166 | 203 | 290 | 1.64e-29 | 114 |
| Msa0108820 | MtrunA17_Chr5g0401891 | 73.864 | 88 | 23 | 0 | 79 | 166 | 179 | 266 | 2.37e-29 | 114 |
| Msa0108820 | MtrunA17_Chr2g0325911 | 72.727 | 88 | 24 | 0 | 79 | 166 | 161 | 248 | 2.30e-28 | 110 |
| Msa0108820 | MtrunA17_Chr6g0452911 | 45.161 | 93 | 50 | 1 | 74 | 165 | 103 | 195 | 2.45e-19 | 85.1 |
| Msa0108820 | MtrunA17_Chr7g0216601 | 45.455 | 88 | 47 | 1 | 79 | 165 | 105 | 192 | 1.25e-18 | 83.2 |
| Msa0108820 | MtrunA17_Chr8g0367311 | 41.509 | 106 | 55 | 3 | 67 | 165 | 4 | 109 | 3.92e-18 | 80.1 |
| Msa0108820 | MtrunA17_Chr4g0054351 | 45.455 | 88 | 47 | 1 | 79 | 165 | 350 | 437 | 6.07e-18 | 81.6 |
| Msa0108820 | MtrunA17_Chr3g0135161 | 44.944 | 89 | 48 | 1 | 78 | 165 | 346 | 434 | 1.09e-17 | 80.9 |
| Msa0108820 | MtrunA17_Chr8g0343851 | 43.820 | 89 | 49 | 1 | 78 | 165 | 284 | 372 | 1.10e-17 | 80.9 |
| Msa0108820 | MtrunA17_Chr7g0269621 | 90.244 | 41 | 4 | 0 | 166 | 206 | 39 | 79 | 3.17e-17 | 77.0 |
| Msa0108820 | MtrunA17_Chr5g0412151 | 44.318 | 88 | 48 | 1 | 79 | 165 | 264 | 351 | 6.39e-17 | 78.6 |
| Msa0108820 | MtrunA17_Chr5g0400871 | 44.318 | 88 | 48 | 1 | 79 | 165 | 289 | 376 | 8.30e-17 | 78.2 |
| Msa0108820 | MtrunA17_Chr1g0195141 | 90.244 | 41 | 4 | 0 | 166 | 206 | 39 | 79 | 8.71e-17 | 75.9 |
| Msa0108820 | MtrunA17_Chr4g0072291 | 42.045 | 88 | 50 | 1 | 79 | 165 | 199 | 286 | 1.59e-16 | 77.4 |
| Msa0108820 | MtrunA17_Chr1g0152161 | 42.697 | 89 | 50 | 1 | 78 | 165 | 348 | 436 | 1.67e-16 | 77.4 |
| Msa0108820 | MtrunA17_Chr8g0355191 | 44.944 | 89 | 48 | 1 | 78 | 165 | 91 | 179 | 1.97e-16 | 77.0 |
| Msa0108820 | MtrunA17_Chr4g0073521 | 42.697 | 89 | 50 | 1 | 78 | 165 | 83 | 171 | 5.16e-16 | 75.5 |
| Msa0108820 | MtrunA17_Chr7g0249621 | 40.909 | 88 | 51 | 1 | 79 | 165 | 299 | 386 | 1.99e-15 | 74.3 |
| Msa0108820 | MtrunA17_Chr4g0032631 | 38.636 | 88 | 53 | 1 | 79 | 165 | 203 | 290 | 3.12e-15 | 73.6 |
| Msa0108820 | MtrunA17_Chr2g0328971 | 39.326 | 89 | 53 | 1 | 78 | 165 | 203 | 291 | 3.47e-15 | 73.6 |
| Msa0108820 | MtrunA17_Chr8g0362541 | 44.944 | 89 | 48 | 1 | 78 | 165 | 105 | 193 | 2.04e-12 | 65.5 |
| Msa0108820 | MtrunA17_Chr8g0355181 | 43.820 | 89 | 49 | 1 | 78 | 165 | 92 | 180 | 2.37e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108820 | AT4G36920.1 | 76.136 | 88 | 21 | 0 | 79 | 166 | 158 | 245 | 5.69e-31 | 117 |
| Msa0108820 | AT4G36920.2 | 76.136 | 88 | 21 | 0 | 79 | 166 | 158 | 245 | 5.69e-31 | 117 |
| Msa0108820 | AT2G28550.5 | 75.000 | 88 | 22 | 0 | 79 | 166 | 14 | 101 | 7.55e-31 | 114 |
| Msa0108820 | AT2G28550.2 | 75.000 | 88 | 22 | 0 | 79 | 166 | 180 | 267 | 1.15e-30 | 114 |
| Msa0108820 | AT2G28550.6 | 75.000 | 88 | 22 | 0 | 79 | 166 | 180 | 267 | 1.15e-30 | 114 |
| Msa0108820 | AT2G28550.4 | 75.000 | 88 | 22 | 0 | 79 | 166 | 180 | 267 | 3.28e-30 | 114 |
| Msa0108820 | AT2G28550.1 | 75.000 | 88 | 22 | 0 | 79 | 166 | 180 | 267 | 1.31e-29 | 114 |
| Msa0108820 | AT2G28550.3 | 75.000 | 88 | 22 | 0 | 79 | 166 | 180 | 267 | 1.46e-29 | 114 |
| Msa0108820 | AT5G67180.4 | 70.455 | 88 | 26 | 0 | 79 | 166 | 123 | 210 | 7.46e-28 | 106 |
| Msa0108820 | AT5G67180.3 | 70.455 | 88 | 26 | 0 | 79 | 166 | 123 | 210 | 1.22e-27 | 106 |
| Msa0108820 | AT5G67180.2 | 70.455 | 88 | 26 | 0 | 79 | 166 | 123 | 210 | 1.66e-27 | 106 |
| Msa0108820 | AT5G67180.1 | 72.093 | 86 | 24 | 0 | 79 | 164 | 123 | 208 | 2.24e-27 | 107 |
| Msa0108820 | AT5G60120.6 | 60.920 | 87 | 34 | 0 | 79 | 165 | 187 | 273 | 7.97e-20 | 87.4 |
| Msa0108820 | AT5G60120.1 | 60.920 | 87 | 34 | 0 | 79 | 165 | 187 | 273 | 8.93e-20 | 87.0 |
| Msa0108820 | AT5G60120.2 | 60.920 | 87 | 34 | 0 | 79 | 165 | 187 | 273 | 1.00e-19 | 87.0 |
| Msa0108820 | AT5G60120.4 | 60.920 | 87 | 34 | 0 | 79 | 165 | 187 | 273 | 1.31e-19 | 86.3 |
| Msa0108820 | AT5G60120.3 | 60.920 | 87 | 34 | 0 | 79 | 165 | 187 | 273 | 1.31e-19 | 86.3 |
| Msa0108820 | AT5G60120.5 | 60.920 | 87 | 34 | 0 | 79 | 165 | 187 | 273 | 1.31e-19 | 86.3 |
| Msa0108820 | AT2G39250.2 | 55.714 | 70 | 31 | 0 | 79 | 148 | 135 | 204 | 6.55e-19 | 82.0 |
| Msa0108820 | AT2G39250.1 | 57.353 | 68 | 29 | 0 | 79 | 146 | 135 | 202 | 1.37e-18 | 82.8 |
| Msa0108820 | AT1G72570.1 | 42.045 | 88 | 50 | 1 | 79 | 165 | 260 | 347 | 1.07e-16 | 78.2 |
| Msa0108820 | AT1G51190.1 | 40.909 | 88 | 51 | 1 | 79 | 165 | 227 | 314 | 1.15e-16 | 78.2 |
| Msa0108820 | AT5G57390.2 | 42.045 | 88 | 50 | 1 | 79 | 165 | 122 | 209 | 1.24e-16 | 78.2 |
| Msa0108820 | AT5G57390.1 | 42.045 | 88 | 50 | 1 | 79 | 165 | 240 | 327 | 1.48e-16 | 78.2 |
| Msa0108820 | AT5G17430.2 | 42.045 | 88 | 50 | 1 | 79 | 165 | 185 | 272 | 1.79e-16 | 77.8 |
| Msa0108820 | AT5G17430.1 | 42.045 | 88 | 50 | 1 | 79 | 165 | 247 | 334 | 1.89e-16 | 77.8 |
| Msa0108820 | AT5G10510.3 | 41.053 | 95 | 55 | 1 | 72 | 165 | 318 | 412 | 3.52e-16 | 77.0 |
| Msa0108820 | AT4G37750.1 | 42.045 | 88 | 50 | 1 | 79 | 165 | 320 | 407 | 4.06e-16 | 76.6 |
| Msa0108820 | AT5G10510.2 | 41.573 | 89 | 51 | 1 | 78 | 165 | 263 | 351 | 5.84e-16 | 76.3 |
| Msa0108820 | AT5G65510.3 | 43.182 | 88 | 49 | 1 | 79 | 165 | 210 | 297 | 6.94e-16 | 75.1 |
| Msa0108820 | AT5G65510.2 | 43.182 | 88 | 49 | 1 | 79 | 165 | 268 | 355 | 8.29e-16 | 75.9 |
| Msa0108820 | AT5G65510.1 | 43.182 | 88 | 49 | 1 | 79 | 165 | 268 | 355 | 8.29e-16 | 75.9 |
| Msa0108820 | AT5G10510.7 | 42.045 | 88 | 50 | 1 | 79 | 165 | 267 | 354 | 8.56e-16 | 75.9 |
| Msa0108820 | AT5G10510.5 | 42.045 | 88 | 50 | 1 | 79 | 165 | 267 | 354 | 8.56e-16 | 75.9 |
| Msa0108820 | AT5G65510.4 | 43.182 | 88 | 49 | 1 | 79 | 165 | 210 | 297 | 8.70e-16 | 75.5 |
| Msa0108820 | AT5G10510.6 | 42.045 | 88 | 50 | 1 | 79 | 165 | 305 | 392 | 1.00e-15 | 75.5 |
| Msa0108820 | AT5G10510.4 | 42.045 | 88 | 50 | 1 | 79 | 165 | 305 | 392 | 1.00e-15 | 75.5 |
| Msa0108820 | AT5G10510.1 | 42.045 | 88 | 50 | 1 | 79 | 165 | 290 | 377 | 1.07e-15 | 75.5 |
| Msa0108820 | AT3G54320.3 | 42.045 | 88 | 50 | 1 | 79 | 165 | 102 | 189 | 1.92e-15 | 74.7 |
| Msa0108820 | AT3G54320.1 | 42.045 | 88 | 50 | 1 | 79 | 165 | 102 | 189 | 2.15e-15 | 74.3 |
| Msa0108820 | AT3G54320.4 | 42.045 | 88 | 50 | 1 | 79 | 165 | 36 | 123 | 3.34e-15 | 73.6 |
| Msa0108820 | AT3G54320.5 | 42.045 | 88 | 50 | 1 | 79 | 165 | 36 | 123 | 3.34e-15 | 73.6 |
| Msa0108820 | AT3G20840.1 | 38.636 | 88 | 53 | 1 | 79 | 165 | 218 | 305 | 5.41e-15 | 73.6 |
| Msa0108820 | AT3G54990.2 | 55.056 | 89 | 40 | 0 | 79 | 167 | 149 | 237 | 1.24e-14 | 70.9 |
| Msa0108820 | AT3G16780.1 | 82.927 | 41 | 7 | 0 | 166 | 206 | 39 | 79 | 2.88e-14 | 69.3 |
| Msa0108820 | AT3G54990.1 | 61.333 | 75 | 29 | 0 | 79 | 153 | 149 | 223 | 4.35e-14 | 70.5 |
| Msa0108820 | AT1G02780.1 | 82.927 | 41 | 7 | 0 | 166 | 206 | 39 | 79 | 1.09e-13 | 67.8 |
| Msa0108820 | AT4G02230.1 | 80.488 | 41 | 8 | 0 | 166 | 206 | 39 | 79 | 2.72e-13 | 66.6 |
| Msa0108820 | AT1G79700.4 | 46.591 | 88 | 46 | 1 | 79 | 165 | 7 | 94 | 2.88e-12 | 63.9 |
| Msa0108820 | AT1G79700.3 | 46.591 | 88 | 46 | 1 | 79 | 165 | 13 | 100 | 2.94e-12 | 64.3 |
| Msa0108820 | AT1G79700.2 | 46.591 | 88 | 46 | 1 | 79 | 165 | 89 | 176 | 4.42e-12 | 64.3 |
| Msa0108820 | AT1G79700.1 | 45.455 | 88 | 47 | 1 | 79 | 165 | 89 | 176 | 2.49e-11 | 62.0 |
| Msa0108820 | AT1G16060.3 | 44.286 | 70 | 38 | 1 | 97 | 165 | 43 | 112 | 4.72e-11 | 61.2 |
| Msa0108820 | AT1G16060.1 | 44.286 | 70 | 38 | 1 | 97 | 165 | 113 | 182 | 4.96e-11 | 61.6 |
Find 53 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCCTTGGAGGGGTATTT+TGG | 0.190404 | 1_3:+20469132 | Msa0108820:CDS |
| AAACATCAGGAAGTTGTTTA+AGG | 0.196812 | 1_3:+20470760 | Msa0108820:CDS |
| TAAACAACTTCCTGATGTTT+TGG | 0.257525 | 1_3:-20470757 | None:intergenic |
| TTAAGGATGGCTTCATTATC+AGG | 0.321072 | 1_3:+20470777 | Msa0108820:CDS |
| ATCGAGCTGCGATTAAATTC+AGG | 0.379752 | 1_3:+20470090 | Msa0108820:CDS |
| TTATGATGATGATCTTAAAC+AGG | 0.440099 | 1_3:+20470148 | Msa0108820:CDS |
| TTTAATCGCAGCTCGATCAT+AGG | 0.441826 | 1_3:-20470084 | None:intergenic |
| GATAGGGAGTGAATCTTAGT+TGG | 0.449443 | 1_3:-20470803 | None:intergenic |
| AAGAAGAAAACGGTGGAGAT+TGG | 0.453039 | 1_3:-20469335 | None:intergenic |
| AAGGGACGTCATTCTAGATA+TGG | 0.453943 | 1_3:+20470857 | Msa0108820:CDS |
| CTCCTTCATGCGCCTAGCAC+AGG | 0.460882 | 1_3:-20470825 | None:intergenic |
| TCAATTCATTAAAACTATCA+AGG | 0.462269 | 1_3:-20470882 | None:intergenic |
| TCTTTGTAGGCCAAAACATC+AGG | 0.468870 | 1_3:+20470747 | Msa0108820:intron |
| TGGCAGTTGGGAAGCTCGAA+TGG | 0.485503 | 1_3:+20470356 | Msa0108820:CDS |
| CATGAAGGAGGCCAAGAGGA+AGG | 0.493620 | 1_3:+20470838 | Msa0108820:CDS |
| ATCAGGAAGTTGTTTAAGGA+TGG | 0.495341 | 1_3:+20470764 | Msa0108820:CDS |
| GCGATTAAATTCAGGGGAGT+TGG | 0.497882 | 1_3:+20470098 | Msa0108820:CDS |
| CACTGCACAAATGTGGCAGT+TGG | 0.508097 | 1_3:+20470343 | Msa0108820:CDS |
| GCTCGAATGGGTCAATTCCT+TGG | 0.510521 | 1_3:+20470369 | Msa0108820:CDS |
| ACTGCACAAATGTGGCAGTT+GGG | 0.511914 | 1_3:+20470344 | Msa0108820:CDS |
| CCGTGTGAGGAGAAGAGAAC+CGG | 0.514670 | 1_3:-20469235 | None:intergenic |
| GGCGAGGTCGACGGAGGAGA+CGG | 0.516043 | 1_3:-20469302 | None:intergenic |
| CATGCGCCTAGCACAGGATA+GGG | 0.528401 | 1_3:-20470819 | None:intergenic |
| GTGTTCAACGGCGAGGTCGA+CGG | 0.530961 | 1_3:-20469311 | None:intergenic |
| AGAATGACGTCCCTTCCTCT+TGG | 0.531849 | 1_3:-20470849 | None:intergenic |
| CGGAGGAGACGGCAAGGTGG+CGG | 0.535976 | 1_3:-20469291 | None:intergenic |
| TCATGCGCCTAGCACAGGAT+AGG | 0.536282 | 1_3:-20470820 | None:intergenic |
| TCGAGCTGCGATTAAATTCA+GGG | 0.538997 | 1_3:+20470091 | Msa0108820:CDS |
| GACGGCAAGGTGGCGGTGTG+AGG | 0.539935 | 1_3:-20469284 | None:intergenic |
| ACACAGCTCATGTTGCTGCT+AGG | 0.553358 | 1_3:+20469979 | Msa0108820:CDS |
| ATGAAGGAGGCCAAGAGGAA+GGG | 0.559525 | 1_3:+20470839 | Msa0108820:CDS |
| CACACTGAGAAAGAAGAAAA+CGG | 0.564005 | 1_3:-20469345 | None:intergenic |
| CCGGTTCTCTTCTCCTCACA+CGG | 0.565646 | 1_3:+20469235 | Msa0108820:CDS |
| TGATAGAGACAAATGGAAGA+AGG | 0.570053 | 1_3:-20469389 | None:intergenic |
| GGCAGTTGGGAAGCTCGAAT+GGG | 0.571868 | 1_3:+20470357 | Msa0108820:CDS |
| TTGTCTCTATCATCAATCAA+AGG | 0.583253 | 1_3:+20469400 | Msa0108820:CDS |
| TGATTGATGATAGAGACAAA+TGG | 0.584709 | 1_3:-20469396 | None:intergenic |
| GTGGAGATTGGTGTGTTCAA+CGG | 0.591351 | 1_3:-20469323 | None:intergenic |
| TTCACTCCCTATCCTGTGCT+AGG | 0.595814 | 1_3:+20470813 | Msa0108820:CDS |
| ATCCTGTGCTAGGCGCATGA+AGG | 0.598410 | 1_3:+20470823 | Msa0108820:CDS |
| GGGCAAAATTGTCAAACGTA+CGG | 0.599358 | 1_3:-20469115 | None:intergenic |
| CTGTGCTAGGCGCATGAAGG+AGG | 0.602422 | 1_3:+20470826 | Msa0108820:CDS |
| TTTACCAAAATACCCCTCCA+AGG | 0.614532 | 1_3:-20469136 | None:intergenic |
| GGTCGACGGAGGAGACGGCA+AGG | 0.637294 | 1_3:-20469297 | None:intergenic |
| GGAGTAACACTGCACAAATG+TGG | 0.639362 | 1_3:+20470336 | Msa0108820:CDS |
| GATTGGTGTGTTCAACGGCG+AGG | 0.643453 | 1_3:-20469318 | None:intergenic |
| TTACCAAAATACCCCTCCAA+GGG | 0.648317 | 1_3:-20469135 | None:intergenic |
| TTCAACGGCGAGGTCGACGG+AGG | 0.650561 | 1_3:-20469308 | None:intergenic |
| GGCGCATGAAGGAGGCCAAG+AGG | 0.655314 | 1_3:+20470834 | Msa0108820:CDS |
| AGAGGGAGTTCGAAGTACAG+AGG | 0.669918 | 1_3:+20470315 | Msa0108820:CDS |
| CGACGGAGGAGACGGCAAGG+TGG | 0.673937 | 1_3:-20469294 | None:intergenic |
| CGAGCTGCGATTAAATTCAG+GGG | 0.681626 | 1_3:+20470092 | Msa0108820:CDS |
| ACTGAGAAAGAAGAAAACGG+TGG | 0.729219 | 1_3:-20469342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATATATATATATATATG+AGG | - | chr1_3:20469180-20469199 | None:intergenic | 10.0% |
| !! | ATATATATATATATATGTTG+TGG | + | chr1_3:20469183-20469202 | Msa0108820:intron | 10.0% |
| !!! | ATTATATGATTTACTATTTT+AGG | + | chr1_3:20469915-20469934 | Msa0108820:intron | 10.0% |
| !!! | TTGTGTAATTAATTTTTTTA+TGG | + | chr1_3:20470030-20470049 | Msa0108820:intron | 10.0% |
| !! | CATATATATATATATATATG+AGG | - | chr1_3:20469180-20469199 | None:intergenic | 10.0% |
| !! | ATATATATATATATATGTTG+TGG | + | chr1_3:20469183-20469202 | Msa0108820:intron | 10.0% |
| !!! | ATTATATGATTTACTATTTT+AGG | + | chr1_3:20469915-20469934 | Msa0108820:intron | 10.0% |
| !!! | TTGTGTAATTAATTTTTTTA+TGG | + | chr1_3:20470030-20470049 | Msa0108820:intron | 10.0% |
| !!! | TTTAATCGATTTAGATTTTT+TGG | + | chr1_3:20469506-20469525 | Msa0108820:intron | 15.0% |
| !!! | TTTATTTTTCAGTTCATTTT+AGG | + | chr1_3:20469659-20469678 | Msa0108820:intron | 15.0% |
| !!! | CTATTTTTTTTCTTTGATTT+TGG | + | chr1_3:20469879-20469898 | Msa0108820:intron | 15.0% |
| !! | ACTTCAGTTAAATTAAAAAT+AGG | - | chr1_3:20470408-20470427 | None:intergenic | 15.0% |
| !! | TAATTTAACTGAAGTTATTT+AGG | + | chr1_3:20470413-20470432 | Msa0108820:intron | 15.0% |
| !! | CTTTGTTCAATTTATTTAAA+TGG | + | chr1_3:20470711-20470730 | Msa0108820:intron | 15.0% |
| !! | TTCAATTTATTTAAATGGTT+TGG | + | chr1_3:20470716-20470735 | Msa0108820:intron | 15.0% |
| !!! | TTTAATCGATTTAGATTTTT+TGG | + | chr1_3:20469506-20469525 | Msa0108820:intron | 15.0% |
| !!! | TTTATTTTTCAGTTCATTTT+AGG | + | chr1_3:20469659-20469678 | Msa0108820:intron | 15.0% |
| !!! | CTATTTTTTTTCTTTGATTT+TGG | + | chr1_3:20469879-20469898 | Msa0108820:intron | 15.0% |
| !! | ACTTCAGTTAAATTAAAAAT+AGG | - | chr1_3:20470408-20470427 | None:intergenic | 15.0% |
| !! | TAATTTAACTGAAGTTATTT+AGG | + | chr1_3:20470413-20470432 | Msa0108820:intron | 15.0% |
| !! | CTTTGTTCAATTTATTTAAA+TGG | + | chr1_3:20470711-20470730 | Msa0108820:intron | 15.0% |
| !! | TTCAATTTATTTAAATGGTT+TGG | + | chr1_3:20470716-20470735 | Msa0108820:intron | 15.0% |
| !!! | TATTTTGGTAAATTGGTAAA+TGG | + | chr1_3:20469147-20469166 | Msa0108820:intron | 20.0% |
| !!! | AAATGGTATTTTCAAATTCA+AGG | - | chr1_3:20469567-20469586 | None:intergenic | 20.0% |
| !! | TTGAATTTGAAAATACCATT+TGG | + | chr1_3:20469566-20469585 | Msa0108820:intron | 20.0% |
| !! | AAATAAAAACTTGGAAAGAT+AGG | - | chr1_3:20469646-20469665 | None:intergenic | 20.0% |
| !! | TGAACTGAAAAATAAAAACT+TGG | - | chr1_3:20469655-20469674 | None:intergenic | 20.0% |
| !!! | GTTTTGTATTTGATTTTTGT+AGG | + | chr1_3:20469948-20469967 | Msa0108820:intron | 20.0% |
| !!! | TAGTGTAACATTTTAAATTG+TGG | + | chr1_3:20470527-20470546 | Msa0108820:intron | 20.0% |
| !!! | AATTTATTTAAATGGTTTGG+TGG | + | chr1_3:20470719-20470738 | Msa0108820:intron | 20.0% |
| !! | TCAATTCATTAAAACTATCA+AGG | - | chr1_3:20470885-20470904 | None:intergenic | 20.0% |
| !!! | TATTTTGGTAAATTGGTAAA+TGG | + | chr1_3:20469147-20469166 | Msa0108820:intron | 20.0% |
| !!! | AAATGGTATTTTCAAATTCA+AGG | - | chr1_3:20469567-20469586 | None:intergenic | 20.0% |
| !! | TTGAATTTGAAAATACCATT+TGG | + | chr1_3:20469566-20469585 | Msa0108820:intron | 20.0% |
| !! | AAATAAAAACTTGGAAAGAT+AGG | - | chr1_3:20469646-20469665 | None:intergenic | 20.0% |
| !! | TGAACTGAAAAATAAAAACT+TGG | - | chr1_3:20469655-20469674 | None:intergenic | 20.0% |
| !!! | GTTTTGTATTTGATTTTTGT+AGG | + | chr1_3:20469948-20469967 | Msa0108820:intron | 20.0% |
| !!! | TAGTGTAACATTTTAAATTG+TGG | + | chr1_3:20470527-20470546 | Msa0108820:intron | 20.0% |
| !!! | AATTTATTTAAATGGTTTGG+TGG | + | chr1_3:20470719-20470738 | Msa0108820:intron | 20.0% |
| !! | TCAATTCATTAAAACTATCA+AGG | - | chr1_3:20470885-20470904 | None:intergenic | 20.0% |
| ! | ATATATATATATGAGGGAGA+TGG | - | chr1_3:20469173-20469192 | None:intergenic | 25.0% |
| ! | TTTGTTCATCTAATTGATTG+AGG | + | chr1_3:20469472-20469491 | Msa0108820:intron | 25.0% |
| !!! | TAGATTTTTTGGTATGTCTT+TGG | + | chr1_3:20469517-20469536 | Msa0108820:intron | 25.0% |
| ! | ATATGGGTAAGTTTCAATTT+GGG | + | chr1_3:20469599-20469618 | Msa0108820:intron | 25.0% |
| !!! | TTGTATTTGATTTTTGTAGG+TGG | + | chr1_3:20469951-20469970 | Msa0108820:intron | 25.0% |
| !! | TTATGATGATGATCTTAAAC+AGG | + | chr1_3:20470148-20470167 | Msa0108820:CDS | 25.0% |
| !! | AAATCAATGTTTTCTCAAGA+GGG | + | chr1_3:20470298-20470317 | Msa0108820:CDS | 25.0% |
| ! | ATATTGAAACATCATGTATC+TGG | + | chr1_3:20470498-20470517 | Msa0108820:intron | 25.0% |
| ! | AAAGAAAATGAATAGAAAGG+AGG | - | chr1_3:20470629-20470648 | None:intergenic | 25.0% |
| ! | AGGAAAGAAAATGAATAGAA+AGG | - | chr1_3:20470632-20470651 | None:intergenic | 25.0% |
| !! | TTTCTATTCATTTTCTTTCC+TGG | + | chr1_3:20470631-20470650 | Msa0108820:intron | 25.0% |
| ! | TTGAACAAAGTTATTGTATC+AGG | - | chr1_3:20470701-20470720 | None:intergenic | 25.0% |
| ! | ATATATATATATGAGGGAGA+TGG | - | chr1_3:20469173-20469192 | None:intergenic | 25.0% |
| ! | TTTGTTCATCTAATTGATTG+AGG | + | chr1_3:20469472-20469491 | Msa0108820:intron | 25.0% |
| !!! | TAGATTTTTTGGTATGTCTT+TGG | + | chr1_3:20469517-20469536 | Msa0108820:intron | 25.0% |
| ! | ATATGGGTAAGTTTCAATTT+GGG | + | chr1_3:20469599-20469618 | Msa0108820:intron | 25.0% |
| !!! | TTGTATTTGATTTTTGTAGG+TGG | + | chr1_3:20469951-20469970 | Msa0108820:intron | 25.0% |
| !! | TTATGATGATGATCTTAAAC+AGG | + | chr1_3:20470148-20470167 | Msa0108820:CDS | 25.0% |
| !! | AAATCAATGTTTTCTCAAGA+GGG | + | chr1_3:20470298-20470317 | Msa0108820:CDS | 25.0% |
| ! | ATATTGAAACATCATGTATC+TGG | + | chr1_3:20470498-20470517 | Msa0108820:intron | 25.0% |
| ! | AAAGAAAATGAATAGAAAGG+AGG | - | chr1_3:20470629-20470648 | None:intergenic | 25.0% |
| ! | AGGAAAGAAAATGAATAGAA+AGG | - | chr1_3:20470632-20470651 | None:intergenic | 25.0% |
| !! | TTTCTATTCATTTTCTTTCC+TGG | + | chr1_3:20470631-20470650 | Msa0108820:intron | 25.0% |
| ! | TTGAACAAAGTTATTGTATC+AGG | - | chr1_3:20470701-20470720 | None:intergenic | 25.0% |
| TCACACGGTAAACAAAAAAA+CGG | + | chr1_3:20469250-20469269 | Msa0108820:CDS | 30.0% | |
| ! | TGATTGATGATAGAGACAAA+TGG | - | chr1_3:20469399-20469418 | None:intergenic | 30.0% |
| TTGTCTCTATCATCAATCAA+AGG | + | chr1_3:20469400-20469419 | Msa0108820:CDS | 30.0% | |
| ACAAAATCGCACCAAAAAAT+GGG | - | chr1_3:20469457-20469476 | None:intergenic | 30.0% | |
| AACAAAATCGCACCAAAAAA+TGG | - | chr1_3:20469458-20469477 | None:intergenic | 30.0% | |
| TTTGAAAATACCATTTGGCA+TGG | + | chr1_3:20469571-20469590 | Msa0108820:intron | 30.0% | |
| GATATGGGTAAGTTTCAATT+TGG | + | chr1_3:20469598-20469617 | Msa0108820:intron | 30.0% | |
| CAGCAATAGAGAAAATCAAA+AGG | - | chr1_3:20469760-20469779 | None:intergenic | 30.0% | |
| ! | AGGCTCTGATATTCAAAATT+TGG | - | chr1_3:20470067-20470086 | None:intergenic | 30.0% |
| TTGATGAATGTGAAACTAGA+TGG | + | chr1_3:20470192-20470211 | Msa0108820:intron | 30.0% | |
| ! | CAAATCAATGTTTTCTCAAG+AGG | + | chr1_3:20470297-20470316 | Msa0108820:CDS | 30.0% |
| AGCAATTCTCTGTTATATCA+CGG | - | chr1_3:20470565-20470584 | None:intergenic | 30.0% | |
| AAAAGTTAATGTATCAGAGC+TGG | - | chr1_3:20470677-20470696 | None:intergenic | 30.0% | |
| ! | TAAACAACTTCCTGATGTTT+TGG | - | chr1_3:20470760-20470779 | None:intergenic | 30.0% |
| AAACATCAGGAAGTTGTTTA+AGG | + | chr1_3:20470760-20470779 | Msa0108820:CDS | 30.0% | |
| TCACACGGTAAACAAAAAAA+CGG | + | chr1_3:20469250-20469269 | Msa0108820:CDS | 30.0% | |
| ! | TGATTGATGATAGAGACAAA+TGG | - | chr1_3:20469399-20469418 | None:intergenic | 30.0% |
| TTGTCTCTATCATCAATCAA+AGG | + | chr1_3:20469400-20469419 | Msa0108820:CDS | 30.0% | |
| ACAAAATCGCACCAAAAAAT+GGG | - | chr1_3:20469457-20469476 | None:intergenic | 30.0% | |
| AACAAAATCGCACCAAAAAA+TGG | - | chr1_3:20469458-20469477 | None:intergenic | 30.0% | |
| TTTGAAAATACCATTTGGCA+TGG | + | chr1_3:20469571-20469590 | Msa0108820:intron | 30.0% | |
| GATATGGGTAAGTTTCAATT+TGG | + | chr1_3:20469598-20469617 | Msa0108820:intron | 30.0% | |
| CAGCAATAGAGAAAATCAAA+AGG | - | chr1_3:20469760-20469779 | None:intergenic | 30.0% | |
| ! | AGGCTCTGATATTCAAAATT+TGG | - | chr1_3:20470067-20470086 | None:intergenic | 30.0% |
| TTGATGAATGTGAAACTAGA+TGG | + | chr1_3:20470192-20470211 | Msa0108820:intron | 30.0% | |
| ! | CAAATCAATGTTTTCTCAAG+AGG | + | chr1_3:20470297-20470316 | Msa0108820:CDS | 30.0% |
| AGCAATTCTCTGTTATATCA+CGG | - | chr1_3:20470565-20470584 | None:intergenic | 30.0% | |
| AAAAGTTAATGTATCAGAGC+TGG | - | chr1_3:20470677-20470696 | None:intergenic | 30.0% | |
| ! | TAAACAACTTCCTGATGTTT+TGG | - | chr1_3:20470760-20470779 | None:intergenic | 30.0% |
| AAACATCAGGAAGTTGTTTA+AGG | + | chr1_3:20470760-20470779 | Msa0108820:CDS | 30.0% | |
| !!! | GTTTTTTTGTTTACCGTGTG+AGG | - | chr1_3:20469251-20469270 | None:intergenic | 35.0% |
| CACACGGTAAACAAAAAAAC+GGG | + | chr1_3:20469251-20469270 | Msa0108820:CDS | 35.0% | |
| CACACTGAGAAAGAAGAAAA+CGG | - | chr1_3:20469348-20469367 | None:intergenic | 35.0% | |
| TGATAGAGACAAATGGAAGA+AGG | - | chr1_3:20469392-20469411 | None:intergenic | 35.0% | |
| CTCTATCATCAATCAAAGGT+TGG | + | chr1_3:20469404-20469423 | Msa0108820:intron | 35.0% | |
| ATTTGGCATGGATCAGATAT+GGG | + | chr1_3:20469583-20469602 | Msa0108820:intron | 35.0% | |
| ! | GTTTCAATTTGGGATGTTAC+TGG | + | chr1_3:20469609-20469628 | Msa0108820:intron | 35.0% |
| CAAAAGTCCTACAGATCATT+AGG | + | chr1_3:20469823-20469842 | Msa0108820:intron | 35.0% | |
| AGATGATCCTAATGATCTGT+AGG | - | chr1_3:20469833-20469852 | None:intergenic | 35.0% | |
| AGATCATTAGGATCATCTCA+GGG | + | chr1_3:20469835-20469854 | Msa0108820:intron | 35.0% | |
| !!! | TAGGTTCTCACTTTTTACCA+AGG | - | chr1_3:20470389-20470408 | None:intergenic | 35.0% |
| CTTACCAACAAAATTGTGCA+CGG | + | chr1_3:20470441-20470460 | Msa0108820:intron | 35.0% | |
| ! | TAAACCGTGCACAATTTTGT+TGG | - | chr1_3:20470448-20470467 | None:intergenic | 35.0% |
| ! | GTGCACGGTTTAGTTTATAT+TGG | + | chr1_3:20470456-20470475 | Msa0108820:intron | 35.0% |
| ! | CTATTCATTTTCTTTCCTGG+AGG | + | chr1_3:20470634-20470653 | Msa0108820:intron | 35.0% |
| ATCAGGAAGTTGTTTAAGGA+TGG | + | chr1_3:20470764-20470783 | Msa0108820:CDS | 35.0% | |
| TTAAGGATGGCTTCATTATC+AGG | + | chr1_3:20470777-20470796 | Msa0108820:CDS | 35.0% | |
| !!! | GTTTTTTTGTTTACCGTGTG+AGG | - | chr1_3:20469251-20469270 | None:intergenic | 35.0% |
| CACACGGTAAACAAAAAAAC+GGG | + | chr1_3:20469251-20469270 | Msa0108820:CDS | 35.0% | |
| CACACTGAGAAAGAAGAAAA+CGG | - | chr1_3:20469348-20469367 | None:intergenic | 35.0% | |
| TGATAGAGACAAATGGAAGA+AGG | - | chr1_3:20469392-20469411 | None:intergenic | 35.0% | |
| CTCTATCATCAATCAAAGGT+TGG | + | chr1_3:20469404-20469423 | Msa0108820:intron | 35.0% | |
| ATTTGGCATGGATCAGATAT+GGG | + | chr1_3:20469583-20469602 | Msa0108820:intron | 35.0% | |
| ! | GTTTCAATTTGGGATGTTAC+TGG | + | chr1_3:20469609-20469628 | Msa0108820:intron | 35.0% |
| CAAAAGTCCTACAGATCATT+AGG | + | chr1_3:20469823-20469842 | Msa0108820:intron | 35.0% | |
| AGATGATCCTAATGATCTGT+AGG | - | chr1_3:20469833-20469852 | None:intergenic | 35.0% | |
| AGATCATTAGGATCATCTCA+GGG | + | chr1_3:20469835-20469854 | Msa0108820:intron | 35.0% | |
| !!! | TAGGTTCTCACTTTTTACCA+AGG | - | chr1_3:20470389-20470408 | None:intergenic | 35.0% |
| CTTACCAACAAAATTGTGCA+CGG | + | chr1_3:20470441-20470460 | Msa0108820:intron | 35.0% | |
| ! | TAAACCGTGCACAATTTTGT+TGG | - | chr1_3:20470448-20470467 | None:intergenic | 35.0% |
| ! | GTGCACGGTTTAGTTTATAT+TGG | + | chr1_3:20470456-20470475 | Msa0108820:intron | 35.0% |
| ! | CTATTCATTTTCTTTCCTGG+AGG | + | chr1_3:20470634-20470653 | Msa0108820:intron | 35.0% |
| ATCAGGAAGTTGTTTAAGGA+TGG | + | chr1_3:20470764-20470783 | Msa0108820:CDS | 35.0% | |
| TTAAGGATGGCTTCATTATC+AGG | + | chr1_3:20470777-20470796 | Msa0108820:CDS | 35.0% | |
| GGGCAAAATTGTCAAACGTA+CGG | - | chr1_3:20469118-20469137 | None:intergenic | 40.0% | |
| ! | ACGTTTGACAATTTTGCCCT+TGG | + | chr1_3:20469119-20469138 | Msa0108820:CDS | 40.0% |
| ! | TTTGACAATTTTGCCCTTGG+AGG | + | chr1_3:20469122-20469141 | Msa0108820:CDS | 40.0% |
| ! | TTGACAATTTTGCCCTTGGA+GGG | + | chr1_3:20469123-20469142 | Msa0108820:CDS | 40.0% |
| TTACCAAAATACCCCTCCAA+GGG | - | chr1_3:20469138-20469157 | None:intergenic | 40.0% | |
| TTTACCAAAATACCCCTCCA+AGG | - | chr1_3:20469139-20469158 | None:intergenic | 40.0% | |
| !!! | GGAGGGGTATTTTGGTAAAT+TGG | + | chr1_3:20469140-20469159 | Msa0108820:intron | 40.0% |
| TTCTTCCTTCTTCTTCAGTC+CGG | + | chr1_3:20469216-20469235 | Msa0108820:intron | 40.0% | |
| AAGAAGAAAACGGTGGAGAT+TGG | - | chr1_3:20469338-20469357 | None:intergenic | 40.0% | |
| ACTGAGAAAGAAGAAAACGG+TGG | - | chr1_3:20469345-20469364 | None:intergenic | 40.0% | |
| !!! | TGCTTGCATGTCCCATTTTT+TGG | + | chr1_3:20469443-20469462 | Msa0108820:intron | 40.0% |
| CATATCTGATCCATGCCAAA+TGG | - | chr1_3:20469584-20469603 | None:intergenic | 40.0% | |
| CATTTGGCATGGATCAGATA+TGG | + | chr1_3:20469582-20469601 | Msa0108820:intron | 40.0% | |
| CAGATCATTAGGATCATCTC+AGG | + | chr1_3:20469834-20469853 | Msa0108820:intron | 40.0% | |
| GATCATTAGGATCATCTCAG+GGG | + | chr1_3:20469836-20469855 | Msa0108820:intron | 40.0% | |
| TTTAATCGCAGCTCGATCAT+AGG | - | chr1_3:20470087-20470106 | None:intergenic | 40.0% | |
| ATCGAGCTGCGATTAAATTC+AGG | + | chr1_3:20470090-20470109 | Msa0108820:CDS | 40.0% | |
| TCGAGCTGCGATTAAATTCA+GGG | + | chr1_3:20470091-20470110 | Msa0108820:CDS | 40.0% | |
| TGACGCAATCTACAAGATGA+TGG | + | chr1_3:20470593-20470612 | Msa0108820:intron | 40.0% | |
| ! | TTTTCTTTCCTGGAGGATGA+TGG | + | chr1_3:20470641-20470660 | Msa0108820:intron | 40.0% |
| AATGTATCAGAGCTGGAACA+GGG | - | chr1_3:20470670-20470689 | None:intergenic | 40.0% | |
| TAATGTATCAGAGCTGGAAC+AGG | - | chr1_3:20470671-20470690 | None:intergenic | 40.0% | |
| TCTTTGTAGGCCAAAACATC+AGG | + | chr1_3:20470747-20470766 | Msa0108820:intron | 40.0% | |
| GATAGGGAGTGAATCTTAGT+TGG | - | chr1_3:20470806-20470825 | None:intergenic | 40.0% | |
| AAGGGACGTCATTCTAGATA+TGG | + | chr1_3:20470857-20470876 | Msa0108820:CDS | 40.0% | |
| GGGCAAAATTGTCAAACGTA+CGG | - | chr1_3:20469118-20469137 | None:intergenic | 40.0% | |
| ! | ACGTTTGACAATTTTGCCCT+TGG | + | chr1_3:20469119-20469138 | Msa0108820:CDS | 40.0% |
| ! | TTTGACAATTTTGCCCTTGG+AGG | + | chr1_3:20469122-20469141 | Msa0108820:CDS | 40.0% |
| ! | TTGACAATTTTGCCCTTGGA+GGG | + | chr1_3:20469123-20469142 | Msa0108820:CDS | 40.0% |
| TTACCAAAATACCCCTCCAA+GGG | - | chr1_3:20469138-20469157 | None:intergenic | 40.0% | |
| TTTACCAAAATACCCCTCCA+AGG | - | chr1_3:20469139-20469158 | None:intergenic | 40.0% | |
| !!! | GGAGGGGTATTTTGGTAAAT+TGG | + | chr1_3:20469140-20469159 | Msa0108820:intron | 40.0% |
| TTCTTCCTTCTTCTTCAGTC+CGG | + | chr1_3:20469216-20469235 | Msa0108820:intron | 40.0% | |
| AAGAAGAAAACGGTGGAGAT+TGG | - | chr1_3:20469338-20469357 | None:intergenic | 40.0% | |
| ACTGAGAAAGAAGAAAACGG+TGG | - | chr1_3:20469345-20469364 | None:intergenic | 40.0% | |
| !!! | TGCTTGCATGTCCCATTTTT+TGG | + | chr1_3:20469443-20469462 | Msa0108820:intron | 40.0% |
| CATATCTGATCCATGCCAAA+TGG | - | chr1_3:20469584-20469603 | None:intergenic | 40.0% | |
| CATTTGGCATGGATCAGATA+TGG | + | chr1_3:20469582-20469601 | Msa0108820:intron | 40.0% | |
| CAGATCATTAGGATCATCTC+AGG | + | chr1_3:20469834-20469853 | Msa0108820:intron | 40.0% | |
| GATCATTAGGATCATCTCAG+GGG | + | chr1_3:20469836-20469855 | Msa0108820:intron | 40.0% | |
| TTTAATCGCAGCTCGATCAT+AGG | - | chr1_3:20470087-20470106 | None:intergenic | 40.0% | |
| ATCGAGCTGCGATTAAATTC+AGG | + | chr1_3:20470090-20470109 | Msa0108820:CDS | 40.0% | |
| TCGAGCTGCGATTAAATTCA+GGG | + | chr1_3:20470091-20470110 | Msa0108820:CDS | 40.0% | |
| TGACGCAATCTACAAGATGA+TGG | + | chr1_3:20470593-20470612 | Msa0108820:intron | 40.0% | |
| ! | TTTTCTTTCCTGGAGGATGA+TGG | + | chr1_3:20470641-20470660 | Msa0108820:intron | 40.0% |
| AATGTATCAGAGCTGGAACA+GGG | - | chr1_3:20470670-20470689 | None:intergenic | 40.0% | |
| TAATGTATCAGAGCTGGAAC+AGG | - | chr1_3:20470671-20470690 | None:intergenic | 40.0% | |
| TCTTTGTAGGCCAAAACATC+AGG | + | chr1_3:20470747-20470766 | Msa0108820:intron | 40.0% | |
| GATAGGGAGTGAATCTTAGT+TGG | - | chr1_3:20470806-20470825 | None:intergenic | 40.0% | |
| AAGGGACGTCATTCTAGATA+TGG | + | chr1_3:20470857-20470876 | Msa0108820:CDS | 40.0% | |
| ! | TGACAATTTTGCCCTTGGAG+GGG | + | chr1_3:20469124-20469143 | Msa0108820:CDS | 45.0% |
| GTGGAGATTGGTGTGTTCAA+CGG | - | chr1_3:20469326-20469345 | None:intergenic | 45.0% | |
| CGAGCTGCGATTAAATTCAG+GGG | + | chr1_3:20470092-20470111 | Msa0108820:CDS | 45.0% | |
| GCGATTAAATTCAGGGGAGT+TGG | + | chr1_3:20470098-20470117 | Msa0108820:CDS | 45.0% | |
| GGAGTAACACTGCACAAATG+TGG | + | chr1_3:20470336-20470355 | Msa0108820:CDS | 45.0% | |
| ACTGCACAAATGTGGCAGTT+GGG | + | chr1_3:20470344-20470363 | Msa0108820:CDS | 45.0% | |
| CTCTGTTATATCACGGACCA+TGG | - | chr1_3:20470558-20470577 | None:intergenic | 45.0% | |
| ! | TTTGGTGGCTCTCTCTTTGT+AGG | + | chr1_3:20470734-20470753 | Msa0108820:intron | 45.0% |
| ! | TGACAATTTTGCCCTTGGAG+GGG | + | chr1_3:20469124-20469143 | Msa0108820:CDS | 45.0% |
| GTGGAGATTGGTGTGTTCAA+CGG | - | chr1_3:20469326-20469345 | None:intergenic | 45.0% | |
| CGAGCTGCGATTAAATTCAG+GGG | + | chr1_3:20470092-20470111 | Msa0108820:CDS | 45.0% | |
| GCGATTAAATTCAGGGGAGT+TGG | + | chr1_3:20470098-20470117 | Msa0108820:CDS | 45.0% | |
| GGAGTAACACTGCACAAATG+TGG | + | chr1_3:20470336-20470355 | Msa0108820:CDS | 45.0% | |
| ACTGCACAAATGTGGCAGTT+GGG | + | chr1_3:20470344-20470363 | Msa0108820:CDS | 45.0% | |
| CTCTGTTATATCACGGACCA+TGG | - | chr1_3:20470558-20470577 | None:intergenic | 45.0% | |
| ! | TTTGGTGGCTCTCTCTTTGT+AGG | + | chr1_3:20470734-20470753 | Msa0108820:intron | 45.0% |
| !! | ATATATATATATATATATGA+GGG | - | chr1_3:20469179-20469198 | None:intergenic | 5.0% |
| !! | ATATATATATATATATATGA+GGG | - | chr1_3:20469179-20469198 | None:intergenic | 5.0% |
| !!! | TTGCCCTTGGAGGGGTATTT+TGG | + | chr1_3:20469132-20469151 | Msa0108820:CDS | 50.0% |
| GAGAACCGGACTGAAGAAGA+AGG | - | chr1_3:20469224-20469243 | None:intergenic | 50.0% | |
| CATTAGGATCATCTCAGGGG+TGG | + | chr1_3:20469839-20469858 | Msa0108820:intron | 50.0% | |
| ACACAGCTCATGTTGCTGCT+AGG | + | chr1_3:20469979-20469998 | Msa0108820:CDS | 50.0% | |
| AGAGGGAGTTCGAAGTACAG+AGG | + | chr1_3:20470315-20470334 | Msa0108820:CDS | 50.0% | |
| CACTGCACAAATGTGGCAGT+TGG | + | chr1_3:20470343-20470362 | Msa0108820:CDS | 50.0% | |
| GCTCGAATGGGTCAATTCCT+TGG | + | chr1_3:20470369-20470388 | Msa0108820:CDS | 50.0% | |
| TTTAAATTGTGGCCGCGCCA+TGG | + | chr1_3:20470538-20470557 | Msa0108820:intron | 50.0% | |
| TTATATCACGGACCATGGCG+CGG | - | chr1_3:20470553-20470572 | None:intergenic | 50.0% | |
| TTCACTCCCTATCCTGTGCT+AGG | + | chr1_3:20470813-20470832 | Msa0108820:CDS | 50.0% | |
| ATGAAGGAGGCCAAGAGGAA+GGG | + | chr1_3:20470839-20470858 | Msa0108820:CDS | 50.0% | |
| AGAATGACGTCCCTTCCTCT+TGG | - | chr1_3:20470852-20470871 | None:intergenic | 50.0% | |
| !!! | TTGCCCTTGGAGGGGTATTT+TGG | + | chr1_3:20469132-20469151 | Msa0108820:CDS | 50.0% |
| GAGAACCGGACTGAAGAAGA+AGG | - | chr1_3:20469224-20469243 | None:intergenic | 50.0% | |
| CATTAGGATCATCTCAGGGG+TGG | + | chr1_3:20469839-20469858 | Msa0108820:intron | 50.0% | |
| ACACAGCTCATGTTGCTGCT+AGG | + | chr1_3:20469979-20469998 | Msa0108820:CDS | 50.0% | |
| AGAGGGAGTTCGAAGTACAG+AGG | + | chr1_3:20470315-20470334 | Msa0108820:CDS | 50.0% | |
| CACTGCACAAATGTGGCAGT+TGG | + | chr1_3:20470343-20470362 | Msa0108820:CDS | 50.0% | |
| GCTCGAATGGGTCAATTCCT+TGG | + | chr1_3:20470369-20470388 | Msa0108820:CDS | 50.0% | |
| TTTAAATTGTGGCCGCGCCA+TGG | + | chr1_3:20470538-20470557 | Msa0108820:intron | 50.0% | |
| TTATATCACGGACCATGGCG+CGG | - | chr1_3:20470553-20470572 | None:intergenic | 50.0% | |
| TTCACTCCCTATCCTGTGCT+AGG | + | chr1_3:20470813-20470832 | Msa0108820:CDS | 50.0% | |
| ATGAAGGAGGCCAAGAGGAA+GGG | + | chr1_3:20470839-20470858 | Msa0108820:CDS | 50.0% | |
| AGAATGACGTCCCTTCCTCT+TGG | - | chr1_3:20470852-20470871 | None:intergenic | 50.0% | |
| CCGTGTGAGGAGAAGAGAAC+CGG | - | chr1_3:20469238-20469257 | None:intergenic | 55.0% | |
| CCGGTTCTCTTCTCCTCACA+CGG | + | chr1_3:20469235-20469254 | Msa0108820:CDS | 55.0% | |
| GATTGGTGTGTTCAACGGCG+AGG | - | chr1_3:20469321-20469340 | None:intergenic | 55.0% | |
| AGGATCATCTCAGGGGTGGA+CGG | + | chr1_3:20469843-20469862 | Msa0108820:intron | 55.0% | |
| TGGCAGTTGGGAAGCTCGAA+TGG | + | chr1_3:20470356-20470375 | Msa0108820:CDS | 55.0% | |
| GGCAGTTGGGAAGCTCGAAT+GGG | + | chr1_3:20470357-20470376 | Msa0108820:CDS | 55.0% | |
| CAGGGTAACCATCATCCTCC+AGG | - | chr1_3:20470652-20470671 | None:intergenic | 55.0% | |
| CATGCGCCTAGCACAGGATA+GGG | - | chr1_3:20470822-20470841 | None:intergenic | 55.0% | |
| TCATGCGCCTAGCACAGGAT+AGG | - | chr1_3:20470823-20470842 | None:intergenic | 55.0% | |
| ATCCTGTGCTAGGCGCATGA+AGG | + | chr1_3:20470823-20470842 | Msa0108820:CDS | 55.0% | |
| CATGAAGGAGGCCAAGAGGA+AGG | + | chr1_3:20470838-20470857 | Msa0108820:CDS | 55.0% | |
| CCGTGTGAGGAGAAGAGAAC+CGG | - | chr1_3:20469238-20469257 | None:intergenic | 55.0% | |
| CCGGTTCTCTTCTCCTCACA+CGG | + | chr1_3:20469235-20469254 | Msa0108820:CDS | 55.0% | |
| GATTGGTGTGTTCAACGGCG+AGG | - | chr1_3:20469321-20469340 | None:intergenic | 55.0% | |
| AGGATCATCTCAGGGGTGGA+CGG | + | chr1_3:20469843-20469862 | Msa0108820:intron | 55.0% | |
| TGGCAGTTGGGAAGCTCGAA+TGG | + | chr1_3:20470356-20470375 | Msa0108820:CDS | 55.0% | |
| GGCAGTTGGGAAGCTCGAAT+GGG | + | chr1_3:20470357-20470376 | Msa0108820:CDS | 55.0% | |
| CAGGGTAACCATCATCCTCC+AGG | - | chr1_3:20470652-20470671 | None:intergenic | 55.0% | |
| CATGCGCCTAGCACAGGATA+GGG | - | chr1_3:20470822-20470841 | None:intergenic | 55.0% | |
| TCATGCGCCTAGCACAGGAT+AGG | - | chr1_3:20470823-20470842 | None:intergenic | 55.0% | |
| ATCCTGTGCTAGGCGCATGA+AGG | + | chr1_3:20470823-20470842 | Msa0108820:CDS | 55.0% | |
| CATGAAGGAGGCCAAGAGGA+AGG | + | chr1_3:20470838-20470857 | Msa0108820:CDS | 55.0% | |
| GTGTTCAACGGCGAGGTCGA+CGG | - | chr1_3:20469314-20469333 | None:intergenic | 60.0% | |
| CTCCTTCATGCGCCTAGCAC+AGG | - | chr1_3:20470828-20470847 | None:intergenic | 60.0% | |
| CTGTGCTAGGCGCATGAAGG+AGG | + | chr1_3:20470826-20470845 | Msa0108820:CDS | 60.0% | |
| GTGTTCAACGGCGAGGTCGA+CGG | - | chr1_3:20469314-20469333 | None:intergenic | 60.0% | |
| CTCCTTCATGCGCCTAGCAC+AGG | - | chr1_3:20470828-20470847 | None:intergenic | 60.0% | |
| CTGTGCTAGGCGCATGAAGG+AGG | + | chr1_3:20470826-20470845 | Msa0108820:CDS | 60.0% | |
| TTCAACGGCGAGGTCGACGG+AGG | - | chr1_3:20469311-20469330 | None:intergenic | 65.0% | |
| GGCGCATGAAGGAGGCCAAG+AGG | + | chr1_3:20470834-20470853 | Msa0108820:CDS | 65.0% | |
| TTCAACGGCGAGGTCGACGG+AGG | - | chr1_3:20469311-20469330 | None:intergenic | 65.0% | |
| GGCGCATGAAGGAGGCCAAG+AGG | + | chr1_3:20470834-20470853 | Msa0108820:CDS | 65.0% | |
| ! | GACGGCAAGGTGGCGGTGTG+AGG | - | chr1_3:20469287-20469306 | None:intergenic | 70.0% |
| CGGAGGAGACGGCAAGGTGG+CGG | - | chr1_3:20469294-20469313 | None:intergenic | 70.0% | |
| CGACGGAGGAGACGGCAAGG+TGG | - | chr1_3:20469297-20469316 | None:intergenic | 70.0% | |
| GGTCGACGGAGGAGACGGCA+AGG | - | chr1_3:20469300-20469319 | None:intergenic | 70.0% | |
| GGCGAGGTCGACGGAGGAGA+CGG | - | chr1_3:20469305-20469324 | None:intergenic | 70.0% | |
| ! | GACGGCAAGGTGGCGGTGTG+AGG | - | chr1_3:20469287-20469306 | None:intergenic | 70.0% |
| CGGAGGAGACGGCAAGGTGG+CGG | - | chr1_3:20469294-20469313 | None:intergenic | 70.0% | |
| CGACGGAGGAGACGGCAAGG+TGG | - | chr1_3:20469297-20469316 | None:intergenic | 70.0% | |
| GGTCGACGGAGGAGACGGCA+AGG | - | chr1_3:20469300-20469319 | None:intergenic | 70.0% | |
| GGCGAGGTCGACGGAGGAGA+CGG | - | chr1_3:20469305-20469324 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 20469107 | 20470904 | 20469107 | ID=Msa0108820;Name=Msa0108820 |
| chr1_3 | mRNA | 20469107 | 20470904 | 20469107 | ID=Msa0108820-mRNA-1;Parent=Msa0108820;Name=Msa0108820-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.4|0.33|0.83|1|1|6|0|213 |
| chr1_3 | exon | 20469107 | 20469153 | 20469107 | ID=Msa0108820-mRNA-1:exon:7384;Parent=Msa0108820-mRNA-1 |
| chr1_3 | exon | 20469234 | 20469421 | 20469234 | ID=Msa0108820-mRNA-1:exon:7385;Parent=Msa0108820-mRNA-1 |
| chr1_3 | exon | 20469970 | 20470000 | 20469970 | ID=Msa0108820-mRNA-1:exon:7386;Parent=Msa0108820-mRNA-1 |
| chr1_3 | exon | 20470082 | 20470169 | 20470082 | ID=Msa0108820-mRNA-1:exon:7387;Parent=Msa0108820-mRNA-1 |
| chr1_3 | exon | 20470252 | 20470390 | 20470252 | ID=Msa0108820-mRNA-1:exon:7388;Parent=Msa0108820-mRNA-1 |
| chr1_3 | exon | 20470756 | 20470904 | 20470756 | ID=Msa0108820-mRNA-1:exon:7389;Parent=Msa0108820-mRNA-1 |
| chr1_3 | CDS | 20469107 | 20469153 | 20469107 | ID=Msa0108820-mRNA-1:cds;Parent=Msa0108820-mRNA-1 |
| chr1_3 | CDS | 20469234 | 20469421 | 20469234 | ID=Msa0108820-mRNA-1:cds;Parent=Msa0108820-mRNA-1 |
| chr1_3 | CDS | 20469970 | 20470000 | 20469970 | ID=Msa0108820-mRNA-1:cds;Parent=Msa0108820-mRNA-1 |
| chr1_3 | CDS | 20470082 | 20470169 | 20470082 | ID=Msa0108820-mRNA-1:cds;Parent=Msa0108820-mRNA-1 |
| chr1_3 | CDS | 20470252 | 20470390 | 20470252 | ID=Msa0108820-mRNA-1:cds;Parent=Msa0108820-mRNA-1 |
| chr1_3 | CDS | 20470756 | 20470904 | 20470756 | ID=Msa0108820-mRNA-1:cds;Parent=Msa0108820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
