AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0662450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662450 MtrunA17_Chr3g0126151 89.610 77 8 0 76 152 47 123 9.74e-44 147
Msa0662450 MtrunA17_Chr4g0030191 86.364 88 12 0 65 152 158 245 1.37e-36 137
Msa0662450 MtrunA17_Chr7g0263581 73.864 88 23 0 65 152 166 253 6.40e-29 115
Msa0662450 MtrunA17_Chr4g0053181 73.864 88 23 0 65 152 203 290 1.39e-28 115
Msa0662450 MtrunA17_Chr5g0401891 73.864 88 23 0 65 152 179 266 2.09e-28 114
Msa0662450 MtrunA17_Chr2g0325911 72.727 88 24 0 65 152 161 248 1.10e-27 112
Msa0662450 MtrunA17_Chr4g0054351 45.455 88 47 1 65 151 350 437 1.71e-18 86.3
Msa0662450 MtrunA17_Chr6g0452911 45.161 93 50 1 60 151 103 195 2.20e-18 85.1
Msa0662450 MtrunA17_Chr3g0135161 44.944 89 48 1 64 151 346 434 2.67e-18 85.5
Msa0662450 MtrunA17_Chr8g0367311 39.091 110 65 2 43 151 1 109 7.53e-18 81.6
Msa0662450 MtrunA17_Chr7g0216601 45.455 88 47 1 65 151 105 192 1.09e-17 83.2
Msa0662450 MtrunA17_Chr1g0152161 39.423 104 60 2 64 166 348 449 5.55e-17 81.6
Msa0662450 MtrunA17_Chr8g0343851 43.820 89 49 1 64 151 284 372 5.72e-17 81.6
Msa0662450 MtrunA17_Chr4g0072291 32.667 150 86 4 65 206 199 341 1.98e-16 79.7
Msa0662450 MtrunA17_Chr3g0116461 88.889 45 5 0 194 238 263 307 2.26e-16 78.6
Msa0662450 MtrunA17_Chr5g0400871 44.318 88 48 1 65 151 289 376 4.40e-16 79.0
Msa0662450 MtrunA17_Chr5g0412151 44.318 88 48 1 65 151 264 351 4.77e-16 78.6
Msa0662450 MtrunA17_Chr8g0355191 44.944 89 48 1 64 151 91 179 1.13e-15 77.4
Msa0662450 MtrunA17_Chr4g0073521 42.697 89 50 1 64 151 83 171 1.72e-15 76.3
Msa0662450 MtrunA17_Chr7g0249621 31.902 163 84 5 65 209 299 452 2.02e-15 77.0
Msa0662450 MtrunA17_Chr7g0269621 87.500 40 5 0 152 191 39 78 5.34e-15 72.8
Msa0662450 MtrunA17_Chr1g0195141 87.500 40 5 0 152 191 39 78 1.16e-14 72.0
Msa0662450 MtrunA17_Chr4g0032631 38.636 88 53 1 65 151 203 290 1.98e-14 73.9
Msa0662450 MtrunA17_Chr2g0328971 39.326 89 53 1 64 151 203 291 2.23e-14 73.6
Msa0662450 MtrunA17_Chr5g0402211 82.500 40 7 0 284 323 398 437 7.57e-13 69.3
Msa0662450 MtrunA17_Chr8g0355181 43.820 89 49 1 64 151 92 180 5.94e-12 65.9
Msa0662450 MtrunA17_Chr8g0362541 44.944 89 48 1 64 151 105 193 6.65e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662450 AT4G36920.1 76.136 88 21 0 65 152 158 245 5.95e-30 118
Msa0662450 AT4G36920.2 76.136 88 21 0 65 152 158 245 5.95e-30 118
Msa0662450 AT2G28550.5 75.000 88 22 0 65 152 14 101 6.96e-30 115
Msa0662450 AT2G28550.2 75.000 88 22 0 65 152 180 267 8.05e-30 115
Msa0662450 AT2G28550.6 75.000 88 22 0 65 152 180 267 8.05e-30 115
Msa0662450 AT2G28550.4 75.000 88 22 0 65 152 180 267 2.45e-29 115
Msa0662450 AT2G28550.1 75.000 88 22 0 65 152 180 267 1.06e-28 115
Msa0662450 AT2G28550.3 75.000 88 22 0 65 152 180 267 1.21e-28 115
Msa0662450 AT5G67180.4 70.455 88 26 0 65 152 123 210 5.52e-27 107
Msa0662450 AT5G67180.3 70.455 88 26 0 65 152 123 210 8.79e-27 107
Msa0662450 AT5G67180.2 70.455 88 26 0 65 152 123 210 1.07e-26 107
Msa0662450 AT5G67180.1 70.455 88 26 0 65 152 123 210 1.47e-26 107
Msa0662450 AT5G60120.6 60.920 87 34 0 65 151 187 273 5.81e-19 87.8
Msa0662450 AT5G60120.1 60.920 87 34 0 65 151 187 273 6.71e-19 87.4
Msa0662450 AT5G60120.2 60.920 87 34 0 65 151 187 273 8.58e-19 87.4
Msa0662450 AT5G60120.4 60.920 87 34 0 65 151 187 273 1.08e-18 86.7
Msa0662450 AT5G60120.3 60.920 87 34 0 65 151 187 273 1.08e-18 86.7
Msa0662450 AT5G60120.5 60.920 87 34 0 65 151 187 273 1.08e-18 86.7
Msa0662450 AT2G39250.2 54.167 72 33 0 65 136 135 206 7.52e-18 81.6
Msa0662450 AT2G39250.1 54.167 72 33 0 65 136 135 206 1.57e-17 82.4
Msa0662450 AT5G57390.2 33.333 150 85 4 65 206 122 264 2.98e-16 79.3
Msa0662450 AT5G57390.1 33.333 150 85 4 65 206 240 382 3.01e-16 79.7
Msa0662450 AT1G72570.1 42.045 88 50 1 65 151 260 347 4.67e-16 79.0
Msa0662450 AT1G51190.1 40.909 88 51 1 65 151 227 314 1.24e-15 77.8
Msa0662450 AT5G17430.1 42.045 88 50 1 65 151 247 334 1.29e-15 77.8
Msa0662450 AT5G17430.2 42.045 88 50 1 65 151 185 272 1.36e-15 77.8
Msa0662450 AT4G37750.1 42.045 88 50 1 65 151 320 407 2.24e-15 77.0
Msa0662450 AT5G10510.3 41.053 95 55 1 58 151 318 412 2.58e-15 77.0
Msa0662450 AT5G65510.3 43.182 88 49 1 65 151 210 297 4.33e-15 75.1
Msa0662450 AT5G10510.2 41.573 89 51 1 64 151 263 351 4.64e-15 76.3
Msa0662450 AT5G65510.2 43.182 88 49 1 65 151 268 355 5.51e-15 75.9
Msa0662450 AT5G65510.1 43.182 88 49 1 65 151 268 355 5.51e-15 75.9
Msa0662450 AT5G65510.4 43.182 88 49 1 65 151 210 297 6.40e-15 75.5
Msa0662450 AT5G10510.7 42.045 88 50 1 65 151 267 354 7.30e-15 75.5
Msa0662450 AT5G10510.5 42.045 88 50 1 65 151 267 354 7.30e-15 75.5
Msa0662450 AT5G10510.6 42.045 88 50 1 65 151 305 392 7.35e-15 75.5
Msa0662450 AT5G10510.4 42.045 88 50 1 65 151 305 392 7.35e-15 75.5
Msa0662450 AT5G10510.1 42.045 88 50 1 65 151 290 377 8.30e-15 75.5
Msa0662450 AT3G54320.3 42.045 88 50 1 65 151 102 189 1.09e-14 74.7
Msa0662450 AT3G54320.1 42.045 88 50 1 65 151 102 189 1.24e-14 74.7
Msa0662450 AT3G54320.4 42.045 88 50 1 65 151 36 123 1.80e-14 73.9
Msa0662450 AT3G54320.5 42.045 88 50 1 65 151 36 123 1.80e-14 73.9
Msa0662450 AT3G20840.1 38.636 88 53 1 65 151 218 305 3.59e-14 73.6
Msa0662450 AT3G54990.2 55.056 89 40 0 65 153 149 237 4.73e-14 71.2
Msa0662450 AT3G54990.1 55.056 89 40 0 65 153 149 237 1.56e-13 70.9
Msa0662450 AT3G48420.1 82.222 45 8 0 194 238 259 303 3.81e-13 69.3
Msa0662450 AT3G16780.1 82.500 40 7 0 152 191 39 78 4.01e-13 67.8
Msa0662450 AT1G02780.1 82.500 40 7 0 152 191 39 78 3.27e-12 65.5
Msa0662450 AT4G02230.1 80.000 40 8 0 152 191 39 78 4.18e-12 65.1
Msa0662450 AT1G79700.4 46.591 88 46 1 65 151 7 94 4.89e-12 65.1
Msa0662450 AT1G79700.3 46.591 88 46 1 65 151 13 100 5.44e-12 65.1
Msa0662450 AT1G79700.2 46.591 88 46 1 65 151 89 176 1.01e-11 65.1
Msa0662450 AT1G79700.1 45.977 87 46 1 65 150 89 175 5.12e-11 63.2
Msa0662450 AT1G16060.3 36.036 111 58 3 54 151 2 112 7.89e-11 62.4
Msa0662450 AT1G16060.1 44.286 70 38 1 83 151 113 182 9.92e-11 62.4

Find 133 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACGAGTTACTATTGTTTA+TGG 0.127348 4_4:-140521 Msa0662450:CDS
AAACATCAGGAAGTTGTTTA+AGG 0.196812 4_4:-142784 Msa0662450:CDS
ACTTTACATGGGAGGATTAA+AGG 0.234605 4_4:-140045 Msa0662450:intron
TGCAATATGGGAAGAGAAAA+AGG 0.243934 4_4:-140312 Msa0662450:three_prime_UTR
TAAACAACTTCCTGATGTTT+TGG 0.257525 4_4:+142787 None:intergenic
ATGTAGTTAGATAAGTTTCT+AGG 0.272462 4_4:-140186 Msa0662450:three_prime_UTR
GCTAACTACGAGGATTATTC+AGG 0.301139 4_4:-140481 Msa0662450:exon
GTTTCAGAACTTACCTCTTA+AGG 0.317681 4_4:+140760 None:intergenic
AGAGAGAGCATTGTGCAATA+TGG 0.318597 4_4:-140325 Msa0662450:three_prime_UTR
TTAAGGATGGCTTCATTATC+AGG 0.321072 4_4:-142767 Msa0662450:CDS
ACCTGATTGGTTAGAGTTGA+AGG 0.346244 4_4:-140151 Msa0662450:three_prime_UTR
GAACGATTATATACCTTTGT+AGG 0.358428 4_4:+140926 None:intergenic
CAGTATTTGCCGGTAGAATC+AGG 0.358742 4_4:+139495 None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 4_4:+139889 None:intergenic
TTTCAGAACTTACCTCTTAA+GGG 0.361709 4_4:+140761 None:intergenic
ATTGCACTTGCAGTTCATAT+TGG 0.363079 4_4:-140832 Msa0662450:intron
GTGGTCGAGGACAGCGTTAT+AGG 0.371251 4_4:-142214 Msa0662450:intron
ATCGAGCTGCGATTAAATTC+AGG 0.379752 4_4:-143449 Msa0662450:CDS
AAATGCATTATGCAGGTATA+CGG 0.385701 4_4:-141937 Msa0662450:intron
CTCTTCCTTCTTCTTCAGTC+CGG 0.389151 4_4:-144324 None:intergenic
GATTTAAGCTTTCACCTGAT+TGG 0.395893 4_4:-140164 Msa0662450:three_prime_UTR
CTGACTAAGATGAACATGTT+TGG 0.399933 4_4:-139338 Msa0662450:three_prime_UTR
GCATTGATTCTTCCCTTAAG+AGG 0.406835 4_4:-140773 Msa0662450:intron
GATAGACTTGCAGTATTTGC+CGG 0.410071 4_4:+139485 None:intergenic
GACGTTGTATTTGACTTCAT+TGG 0.414112 4_4:-141891 Msa0662450:CDS
TTAGATGGACAATGAATTTG+AGG 0.417084 4_4:-141459 Msa0662450:intron
ATTTGAGGAGAAGCAAATAA+AGG 0.421213 4_4:-140217 Msa0662450:three_prime_UTR
TTGGTGAGTATTGTGAAATA+AGG 0.427114 4_4:+138429 None:intergenic
GCAAAATCAGGCTCTACTAT+TGG 0.434597 4_4:-140795 Msa0662450:CDS
AGCAATAATGCCAACAGGAT+TGG 0.436526 4_4:-138559 Msa0662450:three_prime_UTR
TTATGATGATGATCTTAAAC+AGG 0.440099 4_4:-143391 Msa0662450:intron
GAGAGAGCATTGTGCAATAT+GGG 0.440525 4_4:-140324 Msa0662450:three_prime_UTR
TTTAATCGCAGCTCGATCAT+AGG 0.441826 4_4:+143455 None:intergenic
AACCAACTGTTGCAGATATT+AGG 0.442398 4_4:+138721 None:intergenic
AAGGGACGTCATTCTAGATA+TGG 0.444919 4_4:-142687 Msa0662450:intron
GATAGGGAGTGAATCTTAGT+TGG 0.449443 4_4:+142741 None:intergenic
AAGAAGAAAACGGTGGAGAT+TGG 0.453039 4_4:+144205 None:intergenic
CTAGCAGCCGCTAAAGTAGC+TGG 0.453585 4_4:-142190 Msa0662450:CDS
TCTTTGCAGGCCAAAACATC+AGG 0.454379 4_4:-142797 Msa0662450:intron
TTATGCAGGTATACGGCAAA+TGG 0.455407 4_4:-141930 Msa0662450:intron
TGGCAGCAAAGTGCAAAATC+AGG 0.459814 4_4:-140807 Msa0662450:CDS
TCTTGATACATCCAACCAAC+TGG 0.462684 4_4:+140345 None:intergenic
TGTTCAAAGGTATTTAGAAA+AGG 0.464068 4_4:-138486 Msa0662450:three_prime_UTR
GTCTATCACAAAATCAAAGA+AGG 0.465270 4_4:-139469 Msa0662450:three_prime_UTR
GCCTTCAACTCTAACCAATC+AGG 0.470343 4_4:+140150 None:intergenic
TTCGTATAAATATAGAGCAT+TGG 0.477418 4_4:-140244 Msa0662450:three_prime_UTR
GTTTCAGCAATAATGCCAAC+AGG 0.481394 4_4:-138564 Msa0662450:three_prime_UTR
TAAGGTTAGTTAAACAATAG+AGG 0.481505 4_4:+138447 None:intergenic
CTCCTTCATGTTCCTAGCAC+AGG 0.484436 4_4:+142719 None:intergenic
TGAACTAATGTTATGTTCAA+AGG 0.485312 4_4:-138499 Msa0662450:three_prime_UTR
TGGCAGTTGGGAAGCTCGAA+TGG 0.485503 4_4:-143183 Msa0662450:CDS
ATCAGGAAGTTGTTTAAGGA+TGG 0.495341 4_4:-142780 Msa0662450:CDS
AGTCAATGGAAAGGAGTCAT+TGG 0.496054 4_4:+138410 None:intergenic
GCTAACTACATAACTTTACA+TGG 0.496572 4_4:-140057 Msa0662450:three_prime_UTR
GCGATTAAATTCAGGGGAGT+TGG 0.497882 4_4:-143441 Msa0662450:CDS
TATATTTATACGAAAATGAA+AGG 0.501735 4_4:+140253 None:intergenic
AGTTACTATTGTTTATGGAA+TGG 0.503180 4_4:-140516 Msa0662450:CDS
CTTCATCCCAGCTACTTTAG+CGG 0.503426 4_4:+142183 None:intergenic
TCATGTTCCTAGCACAGGAT+AGG 0.503720 4_4:+142724 None:intergenic
GCCAAATCAAACCTCTCCTC+AGG 0.506138 4_4:+141861 None:intergenic
TCAAAACAAAGTATAGTCAA+TGG 0.507968 4_4:+138396 None:intergenic
CACTGCACAAATGTGGCAGT+TGG 0.508097 4_4:-143196 Msa0662450:CDS
GCTCGAATGGGTCAATTCCT+TGG 0.510521 4_4:-143170 Msa0662450:intron
CATGTTCCTAGCACAGGATA+GGG 0.511611 4_4:+142725 None:intergenic
ACTGCACAAATGTGGCAGTT+GGG 0.511914 4_4:-143195 Msa0662450:CDS
CCGTGTGAGGAGAAGAGAAC+CGG 0.514670 4_4:+144305 None:intergenic
AGATACTTGCCTGATTCTAC+CGG 0.514786 4_4:-139504 Msa0662450:three_prime_UTR
AACGATTATATACCTTTGTA+GGG 0.515993 4_4:+140927 None:intergenic
GGCGAGGTCGACGGAGGAGA+CGG 0.516043 4_4:+144238 None:intergenic
ACAAGCAACTTCTGATATGA+TGG 0.520935 4_4:-141432 Msa0662450:CDS
CATGAAGGAGGCCAAGAGGA+AGG 0.522866 4_4:-142706 Msa0662450:CDS
AGTTATGTAGTTAGCCTCCA+TGG 0.526706 4_4:+140065 None:intergenic
GTGTTCAACGGCGAGGTCGA+CGG 0.530961 4_4:+144229 None:intergenic
AGAATGACGTCCCTTCCTCT+TGG 0.531849 4_4:+142695 None:intergenic
GCACATGGCGTTCGAGAGCA+TGG 0.532295 4_4:-139295 Msa0662450:intron
CGGAGGAGACGGCAAGGTGG+CGG 0.535976 4_4:+144249 None:intergenic
CTATTGTTTATGGAATGGCT+AGG 0.538463 4_4:-140511 Msa0662450:CDS
TCGAGCTGCGATTAAATTCA+GGG 0.538997 4_4:-143448 Msa0662450:CDS
GACGGCAAGGTGGCGGTGTG+AGG 0.539935 4_4:+144256 None:intergenic
TCGAGTATAAACCAGTTGGT+TGG 0.543459 4_4:-140356 Msa0662450:three_prime_UTR
ATACATCAGATGCATGAGCC+TGG 0.543661 4_4:-139907 Msa0662450:intron
TCCTGCTTTCAGCTATGAGA+GGG 0.547312 4_4:-140552 Msa0662450:intron
TTCCTGCTTTCAGCTATGAG+AGG 0.550089 4_4:-140553 Msa0662450:intron
GTCTGTCGCTACTACTCTTG+AGG 0.550215 4_4:-139864 Msa0662450:intron
ATTGGTTAGAGTTGAAGGCT+TGG 0.550527 4_4:-140146 Msa0662450:three_prime_UTR
TTGGTGATCCTCCTGAGGAG+AGG 0.552332 4_4:-141872 Msa0662450:intron
ACACAGCTCATGTTGCTGCT+AGG 0.553358 4_4:-143560 Msa0662450:intron
TATTAGAGCTTTGTTAACCA+TGG 0.554431 4_4:-140082 Msa0662450:three_prime_UTR
GGCCTAATATCTGCAACAGT+TGG 0.557391 4_4:-138723 Msa0662450:three_prime_UTR
TAAACAATAGAGGACATCAA+TGG 0.561945 4_4:+138457 None:intergenic
CACACTGAGAAAGAAGAAAA+CGG 0.564005 4_4:+144195 None:intergenic
ATATTTATACGAAAATGAAA+GGG 0.564014 4_4:+140254 None:intergenic
AAACCACGCATGTGTATTGG+TGG 0.565338 4_4:-138688 Msa0662450:three_prime_UTR
CCGGTTCTCTTCTCCTCACA+CGG 0.565646 4_4:-144305 Msa0662450:CDS
CTAACTACGAGGATTATTCA+GGG 0.568404 4_4:-140480 Msa0662450:exon
ATGGACAATGAATTTGAGGA+TGG 0.570269 4_4:-141455 Msa0662450:CDS
GGCAGTTGGGAAGCTCGAAT+GGG 0.571868 4_4:-143182 Msa0662450:CDS
AGTGTATAGTAACAAAGAGC+GGG 0.580787 4_4:-142162 Msa0662450:intron
TTGTCTCTATCATCAATCAA+AGG 0.583253 4_4:-144140 Msa0662450:intron
ATGAAGGAGGCCAAGAGGAA+GGG 0.583542 4_4:-142705 Msa0662450:CDS
GCGACAGACGAAACTCTAGC+AGG 0.588210 4_4:+139878 None:intergenic
ACAAAGTATAGTCAATGGAA+AGG 0.588594 4_4:+138401 None:intergenic
GTGGAGATTGGTGTGTTCAA+CGG 0.591351 4_4:+144217 None:intergenic
TCTATCACAAAATCAAAGAA+GGG 0.593364 4_4:-139468 Msa0662450:intron
TGTTGCAAAATGCCCTACAA+AGG 0.603887 4_4:-140939 Msa0662450:intron
AAATCAAACCTCTCCTCAGG+AGG 0.609598 4_4:+141864 None:intergenic
TTCACTCCCTATCCTGTGCT+AGG 0.612705 4_4:-142731 Msa0662450:CDS
ACTTGCAGTTCATATTGGCA+TGG 0.614305 4_4:-140827 Msa0662450:intron
TAGCAGCCGCTAAAGTAGCT+GGG 0.615799 4_4:-142189 Msa0662450:CDS
TGATTGATGATAGAGACAAA+CGG 0.617251 4_4:+144144 None:intergenic
TAGAGCTTTGTTAACCATGG+AGG 0.620374 4_4:-140079 Msa0662450:three_prime_UTR
CTTCATTGGTGATCCTCCTG+AGG 0.623430 4_4:-141877 Msa0662450:CDS
ACTACATAACTTTACATGGG+AGG 0.625525 4_4:-140053 Msa0662450:three_prime_UTR
AAGTGTATAGTAACAAAGAG+CGG 0.628437 4_4:-142163 Msa0662450:CDS
AATGATTGTGCCAATCCTGT+TGG 0.632692 4_4:+138549 None:intergenic
GGTCGACGGAGGAGACGGCA+AGG 0.637294 4_4:+144243 None:intergenic
GGAGTAACACTGCACAAATG+TGG 0.639362 4_4:-143203 Msa0662450:CDS
GATTGGTGTGTTCAACGGCG+AGG 0.643453 4_4:+144222 None:intergenic
TTCAACGGCGAGGTCGACGG+AGG 0.650561 4_4:+144232 None:intergenic
GGAACATGAAGGAGGCCAAG+AGG 0.653749 4_4:-142710 Msa0662450:CDS
ATATTCGAGTATAAACCAGT+TGG 0.658609 4_4:-140360 Msa0662450:three_prime_UTR
AGAGGGAGTTCGAAGTACAG+AGG 0.669918 4_4:-143224 Msa0662450:CDS
CTAACTACATAACTTTACAT+GGG 0.671104 4_4:-140056 Msa0662450:three_prime_UTR
CGACGGAGGAGACGGCAAGG+TGG 0.673937 4_4:+144246 None:intergenic
CTGTGCTAGGAACATGAAGG+AGG 0.680742 4_4:-142718 Msa0662450:CDS
CGAGCTGCGATTAAATTCAG+GGG 0.681626 4_4:-143447 Msa0662450:CDS
AAATGTTTCTGCAAGCTGTG+CGG 0.691119 4_4:+140964 None:intergenic
ATCCTGTGCTAGGAACATGA+AGG 0.696190 4_4:-142721 Msa0662450:CDS
TAACTACGAGGATTATTCAG+GGG 0.696814 4_4:-140479 Msa0662450:three_prime_UTR
CAGGGGATAAGAATTATCAG+AGG 0.706903 4_4:-140462 Msa0662450:three_prime_UTR
CATCCACCAATACACATGCG+TGG 0.710635 4_4:+138685 None:intergenic
ACTGAGAAAGAAGAAAACGG+TGG 0.729219 4_4:+144198 None:intergenic
AGGTTGTGCAGCTAACTACG+AGG 0.761300 4_4:-140491 Msa0662450:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATGATTTACTATTTT+AGG - chr4_4:139070-139089 Msa0662450:intron 10.0%
!!! TTGTGTAATTAATTTTTTTA+TGG - chr4_4:139185-139204 Msa0662450:intron 10.0%
!!! ATAATCTTTTTTATTGTAAT+AGG - chr4_4:141508-141527 Msa0662450:intron 10.0%
!! ATATTTAATATTATTGATCA+TGG - chr4_4:143298-143317 Msa0662450:intron 10.0%
!!! TTTAATCGATTTAGATTTTT+TGG - chr4_4:138660-138679 Msa0662450:three_prime_UTR 15.0%
!!! TTTATTTTTCACTTCATTTT+AGG - chr4_4:138814-138833 Msa0662450:intron 15.0%
!!! CTATTTTTTTTCTTTGATTT+TGG - chr4_4:139034-139053 Msa0662450:intron 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG + chr4_4:139558-139577 None:intergenic 15.0%
!! TAATTTAACTGAAGTTATTT+AGG - chr4_4:139563-139582 Msa0662450:intron 15.0%
!! CTTTGTTCAATTTATTTAAA+TGG - chr4_4:139861-139880 Msa0662450:intron 15.0%
!! TTCAATTTATTTAAATGGTT+TGG - chr4_4:139866-139885 Msa0662450:three_prime_UTR 15.0%
!!! GATTATTTTGTTTTTTTAGA+TGG - chr4_4:141220-141239 Msa0662450:intron 15.0%
!! TCAACTATTTAACATATAAA+TGG + chr4_4:141559-141578 None:intergenic 15.0%
!! TCATATATTAATTTCCAAAT+TGG - chr4_4:142061-142080 Msa0662450:intron 15.0%
!! ATATTTATACGAAAATGAAA+GGG + chr4_4:142443-142462 None:intergenic 15.0%
!! TATATTTATACGAAAATGAA+AGG + chr4_4:142444-142463 None:intergenic 15.0%
!! TGATATTATTTACATGAATA+AGG + chr4_4:143532-143551 None:intergenic 15.0%
!!! TGAAATGCATATTATTATTT+TGG - chr4_4:143881-143900 Msa0662450:intron 15.0%
!!! AAATGGTATTTTCAAATTCA+AGG + chr4_4:138721-138740 None:intergenic 20.0%
!! TTGAATTTGAAAATACCATT+TGG - chr4_4:138720-138739 Msa0662450:three_prime_UTR 20.0%
!! AAATAAAAACTTGGAAAGAT+AGG + chr4_4:138801-138820 None:intergenic 20.0%
!! TGAAGTGAAAAATAAAAACT+TGG + chr4_4:138810-138829 None:intergenic 20.0%
!!! GTTTTGTATTTGATTTTTGT+AGG - chr4_4:139103-139122 Msa0662450:intron 20.0%
!!! TAGTGTAACTTTTTAAATTG+TGG - chr4_4:139677-139696 Msa0662450:intron 20.0%
!!! AATTTATTTAAATGGTTTGG+TGG - chr4_4:139869-139888 Msa0662450:three_prime_UTR 20.0%
!! TCAATTCATTAAAACTATCA+AGG + chr4_4:140050-140069 None:intergenic 20.0%
!!! TGATAGTTTTAATGAATTGA+AGG - chr4_4:140050-140069 Msa0662450:three_prime_UTR 20.0%
!!! AATAAGTTGCTCTAAAATTT+TGG + chr4_4:140284-140303 None:intergenic 20.0%
!!! GTATATTTCTATTTACTGAA+TGG - chr4_4:140554-140573 Msa0662450:intron 20.0%
!!! GCAACTTTATGTTTTTTTAT+AGG - chr4_4:140580-140599 Msa0662450:intron 20.0%
!! GAAAAGATCAATGTTTATAT+TGG - chr4_4:141006-141025 Msa0662450:intron 20.0%
!!! TTAATGTTGTTGGATTATTT+TGG - chr4_4:141156-141175 Msa0662450:intron 20.0%
!!! TAATGTTGTTGGATTATTTT+GGG - chr4_4:141157-141176 Msa0662450:intron 20.0%
!! TTGTAGTTTATCTAAATTAG+AGG - chr4_4:141453-141472 Msa0662450:CDS 20.0%
!! CAGGAAGAATTATAATAAAA+TGG + chr4_4:141619-141638 None:intergenic 20.0%
!!! CATTTTATTATAATTCTTCC+TGG - chr4_4:141617-141636 Msa0662450:intron 20.0%
!! AATTTCCAAATTGGTTAATT+TGG - chr4_4:142070-142089 Msa0662450:intron 20.0%
!! TATAACCAAATTAACCAATT+TGG + chr4_4:142078-142097 None:intergenic 20.0%
!! TAGGTCAAATTTGAAAAATT+AGG + chr4_4:142894-142913 None:intergenic 20.0%
!!! ATGGTCTTTTTTATATTTTC+AGG - chr4_4:143317-143336 Msa0662450:intron 20.0%
!!! TTTTATATATTGCCTTCATA+TGG - chr4_4:143561-143580 Msa0662450:CDS 20.0%
!!! GATTTTGTTAAACTAAGAAT+GGG + chr4_4:143599-143618 None:intergenic 20.0%
!!! AGATTTTGTTAAACTAAGAA+TGG + chr4_4:143600-143619 None:intergenic 20.0%
!! TTAGTTTAACAAAATCTAAC+TGG - chr4_4:143603-143622 Msa0662450:intron 20.0%
! TTTGTTCTTCTAATTGATTG+AGG - chr4_4:138626-138645 Msa0662450:three_prime_UTR 25.0%
!!! TAGATTTTTTGGTATGTCTT+TGG - chr4_4:138671-138690 Msa0662450:three_prime_UTR 25.0%
! ATATGGGTAAGTTTCAATTT+GGG - chr4_4:138753-138772 Msa0662450:intron 25.0%
!!! TTGTATTTGATTTTTGTAGG+TGG - chr4_4:139106-139125 Msa0662450:intron 25.0%
!! TTATGATGATGATCTTAAAC+AGG - chr4_4:139303-139322 Msa0662450:three_prime_UTR 25.0%
!! AAATCAATGTTTTCTCAAGA+GGG - chr4_4:139453-139472 Msa0662450:intron 25.0%
!! AAAAATAGGACTTTTTACCA+AGG + chr4_4:139544-139563 None:intergenic 25.0%
! ATATTGAAACATCATGTATC+TGG - chr4_4:139648-139667 Msa0662450:intron 25.0%
! AAAGAAAATGAATAGAAAGG+AGG + chr4_4:139779-139798 None:intergenic 25.0%
! AGGAAAGAAAATGAATAGAA+AGG + chr4_4:139782-139801 None:intergenic 25.0%
! TTGAACAAAGTTATTGTATC+AGG + chr4_4:139851-139870 None:intergenic 25.0%
! GAATTGAAGGATATAGATTA+TGG - chr4_4:140063-140082 Msa0662450:three_prime_UTR 25.0%
!!! AAAATCTCTGTTAGTTTGTA+AGG - chr4_4:140086-140105 Msa0662450:three_prime_UTR 25.0%
! AACCTATCTGATACTTTATT+TGG - chr4_4:140350-140369 Msa0662450:three_prime_UTR 25.0%
!! ATCCAAATAAAGTATCAGAT+AGG + chr4_4:140355-140374 None:intergenic 25.0%
!!! AATTTTGTTTTTGAACTGCA+TGG - chr4_4:140404-140423 Msa0662450:three_prime_UTR 25.0%
!!! TTTTCATCATTGGCTTAATA+GGG + chr4_4:140991-141010 None:intergenic 25.0%
!! AACATTGATCTTTTCATCAT+TGG + chr4_4:141001-141020 None:intergenic 25.0%
! TTGATGCTAATTAATGTTGT+TGG - chr4_4:141146-141165 Msa0662450:intron 25.0%
! AATTTAACAGTTGCTTATTC+TGG - chr4_4:141304-141323 Msa0662450:intron 25.0%
! ATTTAACAGTTGCTTATTCT+GGG - chr4_4:141305-141324 Msa0662450:intron 25.0%
!!! GTTGACTTTTGTATTTTATC+AGG - chr4_4:141687-141706 Msa0662450:intron 25.0%
! AACGATTATATACCTTTGTA+GGG + chr4_4:141770-141789 None:intergenic 25.0%
! AGTCTTCTTAAATATCTCAA+TGG - chr4_4:141962-141981 Msa0662450:intron 25.0%
! TGGATCATTGTTTCATAATT+TGG - chr4_4:142017-142036 Msa0662450:intron 25.0%
! TTACGAGTTACTATTGTTTA+TGG - chr4_4:142173-142192 Msa0662450:CDS 25.0%
! AGTTACTATTGTTTATGGAA+TGG - chr4_4:142178-142197 Msa0662450:CDS 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG - chr4_4:142393-142412 Msa0662450:intron 25.0%
! TTCGTATAAATATAGAGCAT+TGG - chr4_4:142450-142469 Msa0662450:intron 25.0%
! ATGTAGTTAGATAAGTTTCT+AGG - chr4_4:142508-142527 Msa0662450:intron 25.0%
! CTAACTACATAACTTTACAT+GGG - chr4_4:142638-142657 Msa0662450:intron 25.0%
! AGTATCAATGCTACATATAT+AGG + chr4_4:142913-142932 None:intergenic 25.0%
! TCTATCACAAAATCAAAGAA+GGG - chr4_4:143226-143245 Msa0662450:CDS 25.0%
! CTTTGATATATTTCAAGACA+TGG - chr4_4:143639-143658 Msa0662450:intron 25.0%
! AGATTTATGCATCCATTATA+AGG + chr4_4:143694-143713 None:intergenic 25.0%
! ACAAGATGAAAAAATTAACG+CGG + chr4_4:143935-143954 None:intergenic 25.0%
! TGAACTAATGTTATGTTCAA+AGG - chr4_4:144195-144214 Msa0662450:CDS 25.0%
!!! TGTTCAAAGGTATTTAGAAA+AGG - chr4_4:144208-144227 Msa0662450:CDS 25.0%
!! TAAGGTTAGTTAAACAATAG+AGG + chr4_4:144250-144269 None:intergenic 25.0%
! TCAAAACAAAGTATAGTCAA+TGG + chr4_4:144301-144320 None:intergenic 25.0%
TCACACGGTAAACAAAAAAA+CGG - chr4_4:138404-138423 Msa0662450:three_prime_UTR 30.0%
! TGATTGATGATAGAGACAAA+CGG + chr4_4:138553-138572 None:intergenic 30.0%
TTGTCTCTATCATCAATCAA+AGG - chr4_4:138554-138573 Msa0662450:three_prime_UTR 30.0%
ACAAAATCGCACCAAAAAAT+GGG + chr4_4:138611-138630 None:intergenic 30.0%
AACAAAATCGCACCAAAAAA+TGG + chr4_4:138612-138631 None:intergenic 30.0%
TTTGAAAATACCATTTGGCA+TGG - chr4_4:138725-138744 Msa0662450:three_prime_UTR 30.0%
GATATGGGTAAGTTTCAATT+TGG - chr4_4:138752-138771 Msa0662450:intron 30.0%
CAGCAATAGAGAAAATCAAA+AGG + chr4_4:138915-138934 None:intergenic 30.0%
! AGGCTCTGATATTCAAAATT+TGG + chr4_4:139222-139241 None:intergenic 30.0%
TTGATGAATGTGAAACTAGA+TGG - chr4_4:139347-139366 Msa0662450:three_prime_UTR 30.0%
! CAAATCAATGTTTTCTCAAG+AGG - chr4_4:139452-139471 Msa0662450:intron 30.0%
CTTACCAACAAAATTGTTCA+CGG - chr4_4:139591-139610 Msa0662450:intron 30.0%
! TAAACCGTGAACAATTTTGT+TGG + chr4_4:139598-139617 None:intergenic 30.0%
! GTTCACGGTTTAGTTTATAT+TGG - chr4_4:139606-139625 Msa0662450:intron 30.0%
AGCAATTCTCTGTTATATCA+CGG + chr4_4:139715-139734 None:intergenic 30.0%
! CTATTCATTTTCTTTCCTAG+AGG - chr4_4:139784-139803 Msa0662450:intron 30.0%
AAAAGTTAATGTATCAGAGC+TGG + chr4_4:139827-139846 None:intergenic 30.0%
! TAAACAACTTCCTGATGTTT+TGG + chr4_4:139910-139929 None:intergenic 30.0%
AAACATCAGGAAGTTGTTTA+AGG - chr4_4:139910-139929 Msa0662450:intron 30.0%
! AAATTCTACTGTTGGTGAAT+AGG + chr4_4:140244-140263 None:intergenic 30.0%
! TCACCAACAGTAGAATTTTA+TGG - chr4_4:140246-140265 Msa0662450:three_prime_UTR 30.0%
ATGCCATAAAATTCTACTGT+TGG + chr4_4:140252-140271 None:intergenic 30.0%
AAGTGTATAGTAACAAAGAG+CGG - chr4_4:140531-140550 Msa0662450:CDS 30.0%
! AGTAAGTTATGTTAGTTTCC+CGG - chr4_4:140611-140630 Msa0662450:intron 30.0%
TAATCTCAAATGCATTATGC+AGG - chr4_4:140750-140769 Msa0662450:intron 30.0%
AAATGCATTATGCAGGTATA+CGG - chr4_4:140757-140776 Msa0662450:intron 30.0%
! TGACATATTGCTTCTAAAGA+AGG + chr4_4:140871-140890 None:intergenic 30.0%
!!! CTTTTCATCATTGGCTTAAT+AGG + chr4_4:140992-141011 None:intergenic 30.0%
! TGATTTTCTGATTCTGATTC+TGG - chr4_4:141193-141212 Msa0662450:intron 30.0%
! GATTTTCTGATTCTGATTCT+GGG - chr4_4:141194-141213 Msa0662450:intron 30.0%
TTAGATGGACAATGAATTTG+AGG - chr4_4:141235-141254 Msa0662450:intron 30.0%
TTTACTATGAGAGAGAGAAA+TGG - chr4_4:141374-141393 Msa0662450:intron 30.0%
GAACGATTATATACCTTTGT+AGG + chr4_4:141771-141790 None:intergenic 30.0%
TTTCAGAACTTACCTCTTAA+GGG + chr4_4:141936-141955 None:intergenic 30.0%
TGATAGCTTATGAAAGTTAC+TGG + chr4_4:142044-142063 None:intergenic 30.0%
TTGCTTCTACAGACAAAAAT+GGG + chr4_4:142260-142279 None:intergenic 30.0%
ATTGCTTCTACAGACAAAAA+TGG + chr4_4:142261-142280 None:intergenic 30.0%
ATATTCGAGTATAAACCAGT+TGG - chr4_4:142334-142353 Msa0662450:intron 30.0%
!! TAGAGCATTGGAAAAATTTG+AGG - chr4_4:142462-142481 Msa0662450:intron 30.0%
ATTTGAGGAGAAGCAAATAA+AGG - chr4_4:142477-142496 Msa0662450:intron 30.0%
!! TATTAGAGCTTTGTTAACCA+TGG - chr4_4:142612-142631 Msa0662450:intron 30.0%
GCTAACTACATAACTTTACA+TGG - chr4_4:142637-142656 Msa0662450:intron 30.0%
CACGTGTTAGTAAATACAAT+TGG - chr4_4:143098-143117 Msa0662450:intron 30.0%
GTCTATCACAAAATCAAAGA+AGG - chr4_4:143225-143244 Msa0662450:CDS 30.0%
ATGTTCTTGATACCATATGA+AGG + chr4_4:143576-143595 None:intergenic 30.0%
AATTCTACTTATAAGGCCTT+AGG + chr4_4:143742-143761 None:intergenic 30.0%
GCTGCATAATTCTACTTATA+AGG + chr4_4:143749-143768 None:intergenic 30.0%
CTATATGCTCATGCTATATA+AGG + chr4_4:143836-143855 None:intergenic 30.0%
AATGATACATGATCGAACTA+TGG + chr4_4:143908-143927 None:intergenic 30.0%
!!! TCATCTTGTTTTGTAGATGA+TGG - chr4_4:143946-143965 Msa0662450:intron 30.0%
!! TACACCTGTGTTTTTAATGT+TGG - chr4_4:144063-144082 Msa0662450:intron 30.0%
GATACCAACATTAAAAACAC+AGG + chr4_4:144070-144089 None:intergenic 30.0%
TAAACAATAGAGGACATCAA+TGG + chr4_4:144240-144259 None:intergenic 30.0%
! TTGGTGAGTATTGTGAAATA+AGG + chr4_4:144268-144287 None:intergenic 30.0%
ACAAAGTATAGTCAATGGAA+AGG + chr4_4:144296-144315 None:intergenic 30.0%
!!! GTTTTTTTGTTTACCGTGTG+AGG + chr4_4:138405-138424 None:intergenic 35.0%
CACACGGTAAACAAAAAAAC+GGG - chr4_4:138405-138424 Msa0662450:three_prime_UTR 35.0%
CACACTGAGAAAGAAGAAAA+CGG + chr4_4:138502-138521 None:intergenic 35.0%
CTCTATCATCAATCAAAGGT+TGG - chr4_4:138558-138577 Msa0662450:three_prime_UTR 35.0%
ATTTGGCATGGATCAGATAT+GGG - chr4_4:138737-138756 Msa0662450:intron 35.0%
! GTTTCAATTTGGGATGTTAC+TGG - chr4_4:138763-138782 Msa0662450:intron 35.0%
CAAAAGTCCTACAGATCATT+AGG - chr4_4:138978-138997 Msa0662450:intron 35.0%
AGATGATCCTAATGATCTGT+AGG + chr4_4:138988-139007 None:intergenic 35.0%
AGATCATTAGGATCATCTCA+GGG - chr4_4:138990-139009 Msa0662450:intron 35.0%
CATTACATGATGCAATCTAC+AGG - chr4_4:139736-139755 Msa0662450:intron 35.0%
! TTTTCTTTCCTAGAGGATGA+TGG - chr4_4:139791-139810 Msa0662450:intron 35.0%
ATCAGGAAGTTGTTTAAGGA+TGG - chr4_4:139914-139933 Msa0662450:intron 35.0%
TTAAGGATGGCTTCATTATC+AGG - chr4_4:139927-139946 Msa0662450:intron 35.0%
!! ATCTCTGTTAGTTTGTAAGG+TGG - chr4_4:140089-140108 Msa0662450:three_prime_UTR 35.0%
TTAGTTGTGCTGAGTATTCT+AGG - chr4_4:140192-140211 Msa0662450:three_prime_UTR 35.0%
! TCAACCCTATTTGAAGTGTA+TGG - chr4_4:140305-140324 Msa0662450:three_prime_UTR 35.0%
CACTCCATACACTTCAAATA+GGG + chr4_4:140312-140331 None:intergenic 35.0%
! TCTTATTTACAGATGTGTCG+TGG - chr4_4:140461-140480 Msa0662450:three_prime_UTR 35.0%
AGTGTATAGTAACAAAGAGC+GGG - chr4_4:140532-140551 Msa0662450:CDS 35.0%
! GAGTTTAAAGTCAGAGATCT+CGG + chr4_4:140644-140663 None:intergenic 35.0%
! GACGTTGTATTTGACTTCAT+TGG - chr4_4:140803-140822 Msa0662450:CDS 35.0%
!!! AGGTTTGATTTGGCATTTTG+TGG - chr4_4:140842-140861 Msa0662450:intron 35.0%
!! AGCACTGATAGAAATAGTGA+AGG + chr4_4:140942-140961 None:intergenic 35.0%
GGTAAGAGTGAAAAGAAATG+AGG + chr4_4:140970-140989 None:intergenic 35.0%
ATGGACAATGAATTTGAGGA+TGG - chr4_4:141239-141258 Msa0662450:intron 35.0%
ACAAGCAACTTCTGATATGA+TGG - chr4_4:141262-141281 Msa0662450:intron 35.0%
TGTGATTTCAGTCCTTTATC+TGG - chr4_4:141345-141364 Msa0662450:intron 35.0%
ATTTCAGTCCTTTATCTGGA+AGG - chr4_4:141349-141368 Msa0662450:intron 35.0%
AGTAAACACCTTCCAGATAA+AGG + chr4_4:141360-141379 None:intergenic 35.0%
AATGGAAGGACAATAGAAAG+TGG - chr4_4:141392-141411 Msa0662450:intron 35.0%
! AGTGGTTCAATTGATTCACA+TGG - chr4_4:141410-141429 Msa0662450:intron 35.0%
TCTTCCTGGATCTTCATTTA+TGG - chr4_4:141631-141650 Msa0662450:intron 35.0%
! CTTGTCATTTGTCCAATGAT+CGG - chr4_4:141800-141819 Msa0662450:intron 35.0%
ATTTGTCCAATGATCGGAAA+TGG - chr4_4:141806-141825 Msa0662450:intron 35.0%
GATATTCCATTTCCGATCAT+TGG + chr4_4:141815-141834 None:intergenic 35.0%
ATTGCACTTGCAGTTCATAT+TGG - chr4_4:141862-141881 Msa0662450:intron 35.0%
GTTTCAGAACTTACCTCTTA+AGG + chr4_4:141937-141956 None:intergenic 35.0%
ACAATGATCCATCAGTAAGT+AGG + chr4_4:142008-142027 None:intergenic 35.0%
CTATTGTTTATGGAATGGCT+AGG - chr4_4:142183-142202 Msa0662450:CDS 35.0%
CTAACTACGAGGATTATTCA+GGG - chr4_4:142214-142233 Msa0662450:intron 35.0%
TAACTACGAGGATTATTCAG+GGG - chr4_4:142215-142234 Msa0662450:intron 35.0%
TGCTTCTACAGACAAAAATG+GGG + chr4_4:142259-142278 None:intergenic 35.0%
TGCAATATGGGAAGAGAAAA+AGG - chr4_4:142382-142401 Msa0662450:intron 35.0%
GATTTAAGCTTTCACCTGAT+TGG - chr4_4:142530-142549 Msa0662450:intron 35.0%
ACTACATAACTTTACATGGG+AGG - chr4_4:142641-142660 Msa0662450:intron 35.0%
ACTTTACATGGGAGGATTAA+AGG - chr4_4:142649-142668 Msa0662450:intron 35.0%
!! AGAAGAATCAAGTTGACTGT+TGG - chr4_4:142710-142729 Msa0662450:CDS 35.0%
GGATGCAGTTATAACAACAA+TGG - chr4_4:142731-142750 Msa0662450:CDS 35.0%
!! TGGTATTCAGTTGATGATGT+TGG - chr4_4:142751-142770 Msa0662450:CDS 35.0%
!! AGTTGATGATGTTGGTTCTT+TGG - chr4_4:142759-142778 Msa0662450:CDS 35.0%
GAACAGATTAAACTGTCAGA+AGG - chr4_4:143159-143178 Msa0662450:intron 35.0%
CTGACTAAGATGAACATGTT+TGG - chr4_4:143356-143375 Msa0662450:intron 35.0%
TTCACCTTTGCTTAGTTTCA+AGG - chr4_4:143453-143472 Msa0662450:CDS 35.0%
GAAATGCATAACAGAAACTG+TGG - chr4_4:143661-143680 Msa0662450:intron 35.0%
!!! CTTGTTTTGTAGATGATGGT+AGG - chr4_4:143950-143969 Msa0662450:intron 35.0%
AACCAACTGTTGCAGATATT+AGG + chr4_4:143976-143995 None:intergenic 35.0%
AAAAAACCACGCATGTGTAT+TGG - chr4_4:144003-144022 Msa0662450:intron 35.0%
AAGAAGAAAACGGTGGAGAT+TGG + chr4_4:138492-138511 None:intergenic 40.0%
ACTGAGAAAGAAGAAAACGG+TGG + chr4_4:138499-138518 None:intergenic 40.0%
!!! TGCTTGCATGTCCCATTTTT+TGG - chr4_4:138597-138616 Msa0662450:three_prime_UTR 40.0%
CATATCTGATCCATGCCAAA+TGG + chr4_4:138738-138757 None:intergenic 40.0%
CATTTGGCATGGATCAGATA+TGG - chr4_4:138736-138755 Msa0662450:intron 40.0%
CAGATCATTAGGATCATCTC+AGG - chr4_4:138989-139008 Msa0662450:intron 40.0%
GATCATTAGGATCATCTCAG+GGG - chr4_4:138991-139010 Msa0662450:intron 40.0%
TTTAATCGCAGCTCGATCAT+AGG + chr4_4:139242-139261 None:intergenic 40.0%
ATCGAGCTGCGATTAAATTC+AGG - chr4_4:139245-139264 Msa0662450:intron 40.0%
TCGAGCTGCGATTAAATTCA+GGG - chr4_4:139246-139265 Msa0662450:intron 40.0%
TGATGCAATCTACAGGATGA+TGG - chr4_4:139743-139762 Msa0662450:intron 40.0%
AATGTATCAGAGCTGGAACA+GGG + chr4_4:139820-139839 None:intergenic 40.0%
TAATGTATCAGAGCTGGAAC+AGG + chr4_4:139821-139840 None:intergenic 40.0%
GATAGGGAGTGAATCTTAGT+TGG + chr4_4:139956-139975 None:intergenic 40.0%
AAGGGACGTCATTCTAGATA+TGG - chr4_4:140007-140026 Msa0662450:intron 40.0%
GCACTCCATACACTTCAAAT+AGG + chr4_4:140313-140332 None:intergenic 40.0%
TTATGCAGGTATACGGCAAA+TGG - chr4_4:140764-140783 Msa0662450:intron 40.0%
TAGCAAACTGTGAAGTGATG+AGG - chr4_4:140893-140912 Msa0662450:intron 40.0%
TCATTCGTGGAGCAAATTAC+AGG + chr4_4:141103-141122 None:intergenic 40.0%
CTATGAGAGAGAGAAATGGA+AGG - chr4_4:141378-141397 Msa0662450:intron 40.0%
GTTGCCATAAATGAAGATCC+AGG + chr4_4:141638-141657 None:intergenic 40.0%
! AAATGTTTCTGCAAGCTGTG+CGG + chr4_4:141733-141752 None:intergenic 40.0%
TGTTGCAAAATGCCCTACAA+AGG - chr4_4:141755-141774 Msa0662450:intron 40.0%
ACTTGCAGTTCATATTGGCA+TGG - chr4_4:141867-141886 Msa0662450:intron 40.0%
GCAAAATCAGGCTCTACTAT+TGG - chr4_4:141899-141918 Msa0662450:CDS 40.0%
!! GCATTGATTCTTCCCTTAAG+AGG - chr4_4:141921-141940 Msa0662450:CDS 40.0%
GCTAACTACGAGGATTATTC+AGG - chr4_4:142213-142232 Msa0662450:intron 40.0%
CAGGGGATAAGAATTATCAG+AGG - chr4_4:142232-142251 Msa0662450:intron 40.0%
TCGAGTATAAACCAGTTGGT+TGG - chr4_4:142338-142357 Msa0662450:intron 40.0%
TCTTGATACATCCAACCAAC+TGG + chr4_4:142352-142371 None:intergenic 40.0%
!! AGAGAGAGCATTGTGCAATA+TGG - chr4_4:142369-142388 Msa0662450:intron 40.0%
!! GAGAGAGCATTGTGCAATAT+GGG - chr4_4:142370-142389 Msa0662450:intron 40.0%
! ACCTGATTGGTTAGAGTTGA+AGG - chr4_4:142543-142562 Msa0662450:intron 40.0%
ATTGGTTAGAGTTGAAGGCT+TGG - chr4_4:142548-142567 Msa0662450:intron 40.0%
!! TAGAGCTTTGTTAACCATGG+AGG - chr4_4:142615-142634 Msa0662450:intron 40.0%
! AGTTATGTAGTTAGCCTCCA+TGG + chr4_4:142632-142651 None:intergenic 40.0%
GAGGATTAAAGGTAAGTGCT+TGG - chr4_4:142660-142679 Msa0662450:intron 40.0%
ACTCTTGAGGTAAGCATCTT+CGG - chr4_4:142843-142862 Msa0662450:intron 40.0%
AGATACTTGCCTGATTCTAC+CGG - chr4_4:143190-143209 Msa0662450:CDS 40.0%
GATAGACTTGCAGTATTTGC+CGG + chr4_4:143212-143231 None:intergenic 40.0%
!! AAAGCTGATGGTTTTGCACA+TGG - chr4_4:143384-143403 Msa0662450:intron 40.0%
! GAGAGCATGGTATGTAATCT+TGG - chr4_4:143412-143431 Msa0662450:CDS 40.0%
CATGCCTTGAAACTAAGCAA+AGG + chr4_4:143460-143479 None:intergenic 40.0%
GTAATACAGCTCTTTGCCTA+AGG - chr4_4:143723-143742 Msa0662450:intron 40.0%
GTTTCAGCAATAATGCCAAC+AGG - chr4_4:144130-144149 Msa0662450:intron 40.0%
AGCAATAATGCCAACAGGAT+TGG - chr4_4:144135-144154 Msa0662450:intron 40.0%
AATGATTGTGCCAATCCTGT+TGG + chr4_4:144148-144167 None:intergenic 40.0%
AGTCAATGGAAAGGAGTCAT+TGG + chr4_4:144287-144306 None:intergenic 40.0%
GTGGAGATTGGTGTGTTCAA+CGG + chr4_4:138480-138499 None:intergenic 45.0%
CGAGCTGCGATTAAATTCAG+GGG - chr4_4:139247-139266 Msa0662450:intron 45.0%
GCGATTAAATTCAGGGGAGT+TGG - chr4_4:139253-139272 Msa0662450:intron 45.0%
GGAGTAACACTGCACAAATG+TGG - chr4_4:139491-139510 Msa0662450:three_prime_UTR 45.0%
ACTGCACAAATGTGGCAGTT+GGG - chr4_4:139499-139518 Msa0662450:three_prime_UTR 45.0%
CTCTGTTATATCACGGACCA+TGG + chr4_4:139708-139727 None:intergenic 45.0%
TCTTTGCAGGCCAAAACATC+AGG - chr4_4:139897-139916 Msa0662450:three_prime_UTR 45.0%
CATGTTCCTAGCACAGGATA+GGG + chr4_4:139972-139991 None:intergenic 45.0%
TCATGTTCCTAGCACAGGAT+AGG + chr4_4:139973-139992 None:intergenic 45.0%
ATCCTGTGCTAGGAACATGA+AGG - chr4_4:139973-139992 Msa0662450:intron 45.0%
! CTTCATCCCAGCTACTTTAG+CGG + chr4_4:140514-140533 None:intergenic 45.0%
AGAGATCTCGGATTTGATCC+GGG + chr4_4:140632-140651 None:intergenic 45.0%
CAGAGATCTCGGATTTGATC+CGG + chr4_4:140633-140652 None:intergenic 45.0%
TTAGAAGTCCCACACTACGA+AGG + chr4_4:140699-140718 None:intergenic 45.0%
AAATCAAACCTCTCCTCAGG+AGG + chr4_4:140833-140852 None:intergenic 45.0%
TCCTGAGGAGAGGTTTGATT+TGG - chr4_4:140832-140851 Msa0662450:intron 45.0%
CAGAGAAGCTAACTCATTCG+TGG + chr4_4:141116-141135 None:intergenic 45.0%
TGATGGCAAGCAGTCAACAA+AGG - chr4_4:141279-141298 Msa0662450:intron 45.0%
TGGCAGCAAAGTGCAAAATC+AGG - chr4_4:141887-141906 Msa0662450:CDS 45.0%
TGCAGAAGCCTACTTACTGA+TGG - chr4_4:141997-142016 Msa0662450:intron 45.0%
CTGAAAGCAGGAACGAAAAG+AGG + chr4_4:142134-142153 None:intergenic 45.0%
TTCCTGCTTTCAGCTATGAG+AGG - chr4_4:142141-142160 Msa0662450:intron 45.0%
TCCTGCTTTCAGCTATGAGA+GGG - chr4_4:142142-142161 Msa0662450:intron 45.0%
GCCTTCAACTCTAACCAATC+AGG + chr4_4:142547-142566 None:intergenic 45.0%
ATACATCAGATGCATGAGCC+TGG - chr4_4:142787-142806 Msa0662450:CDS 45.0%
CAGTATTTGCCGGTAGAATC+AGG + chr4_4:143202-143221 None:intergenic 45.0%
TGTGGCGCGAATCCTTATAA+TGG - chr4_4:143679-143698 Msa0662450:intron 45.0%
GGCCTAATATCTGCAACAGT+TGG - chr4_4:143971-143990 Msa0662450:intron 45.0%
AAACCACGCATGTGTATTGG+TGG - chr4_4:144006-144025 Msa0662450:intron 45.0%
CATTAGGATCATCTCAGGGG+TGG - chr4_4:138994-139013 Msa0662450:intron 50.0%
ACACAGCTCATGTTGCTGCT+AGG - chr4_4:139134-139153 Msa0662450:intron 50.0%
AGAGGGAGTTCGAAGTACAG+AGG - chr4_4:139470-139489 Msa0662450:three_prime_UTR 50.0%
CACTGCACAAATGTGGCAGT+TGG - chr4_4:139498-139517 Msa0662450:three_prime_UTR 50.0%
GCTCGAATGGGTCAATTCCT+TGG - chr4_4:139524-139543 Msa0662450:intron 50.0%
TTTAAATTGTGGCCGCGCCA+TGG - chr4_4:139688-139707 Msa0662450:intron 50.0%
TTATATCACGGACCATGGCG+CGG + chr4_4:139703-139722 None:intergenic 50.0%
CAGGGTAACCATCATCCTCT+AGG + chr4_4:139802-139821 None:intergenic 50.0%
! TTTGGTGGCTCTCTCTTTGC+AGG - chr4_4:139884-139903 Msa0662450:three_prime_UTR 50.0%
TTCACTCCCTATCCTGTGCT+AGG - chr4_4:139963-139982 Msa0662450:intron 50.0%
CTCCTTCATGTTCCTAGCAC+AGG + chr4_4:139978-139997 None:intergenic 50.0%
CTGTGCTAGGAACATGAAGG+AGG - chr4_4:139976-139995 Msa0662450:intron 50.0%
ATGAAGGAGGCCAAGAGGAA+GGG - chr4_4:139989-140008 Msa0662450:intron 50.0%
AGAATGACGTCCCTTCCTCT+TGG + chr4_4:140002-140021 None:intergenic 50.0%
TTACAGATGTGTCGTGGTCG+AGG - chr4_4:140467-140486 Msa0662450:three_prime_UTR 50.0%
TAGCAGCCGCTAAAGTAGCT+GGG - chr4_4:140505-140524 Msa0662450:CDS 50.0%
GGTGAGCTAAGGGACATTGA+AGG + chr4_4:140666-140685 None:intergenic 50.0%
! CTTCATTGGTGATCCTCCTG+AGG - chr4_4:140817-140836 Msa0662450:CDS 50.0%
GCCAAATCAAACCTCTCCTC+AGG + chr4_4:140836-140855 None:intergenic 50.0%
TCCCTCTCATAGCTGAAAGC+AGG + chr4_4:142146-142165 None:intergenic 50.0%
AGGTTGTGCAGCTAACTACG+AGG - chr4_4:142203-142222 Msa0662450:CDS 50.0%
AACTCTAGCAGGCTCTTTCC+AGG + chr4_4:142808-142827 None:intergenic 50.0%
GTCTGTCGCTACTACTCTTG+AGG - chr4_4:142830-142849 Msa0662450:intron 50.0%
GTCGACATGATTCTCACACG+TGG - chr4_4:142962-142981 Msa0662450:intron 50.0%
CATCCACCAATACACATGCG+TGG + chr4_4:144012-144031 None:intergenic 50.0%
CCGTGTGAGGAGAAGAGAAC+CGG + chr4_4:138392-138411 None:intergenic 55.0%
CCGGTTCTCTTCTCCTCACA+CGG - chr4_4:138389-138408 Msa0662450:three_prime_UTR 55.0%
GATTGGTGTGTTCAACGGCG+AGG + chr4_4:138475-138494 None:intergenic 55.0%
AGGATCATCTCAGGGGTGGA+CGG - chr4_4:138998-139017 Msa0662450:intron 55.0%
TGGCAGTTGGGAAGCTCGAA+TGG - chr4_4:139511-139530 Msa0662450:three_prime_UTR 55.0%
GGCAGTTGGGAAGCTCGAAT+GGG - chr4_4:139512-139531 Msa0662450:three_prime_UTR 55.0%
GGAACATGAAGGAGGCCAAG+AGG - chr4_4:139984-140003 Msa0662450:intron 55.0%
CATGAAGGAGGCCAAGAGGA+AGG - chr4_4:139988-140007 Msa0662450:intron 55.0%
GTGGTCGAGGACAGCGTTAT+AGG - chr4_4:140480-140499 Msa0662450:exon 55.0%
CTAGCAGCCGCTAAAGTAGC+TGG - chr4_4:140504-140523 Msa0662450:CDS 55.0%
!! CAGCTCGGTTGGTGAGCTAA+GGG + chr4_4:140676-140695 None:intergenic 55.0%
! TTGGTGATCCTCCTGAGGAG+AGG - chr4_4:140822-140841 Msa0662450:CDS 55.0%
GCGACAGACGAAACTCTAGC+AGG + chr4_4:142819-142838 None:intergenic 55.0%
GTGTTCAACGGCGAGGTCGA+CGG + chr4_4:138468-138487 None:intergenic 60.0%
!! GCAGCTCGGTTGGTGAGCTA+AGG + chr4_4:140677-140696 None:intergenic 60.0%
CACTACGAAGGCAGCTCGGT+TGG + chr4_4:140687-140706 None:intergenic 60.0%
ACCGAGCTGCCTTCGTAGTG+TGG - chr4_4:140687-140706 Msa0662450:intron 60.0%
CCCACACTACGAAGGCAGCT+CGG + chr4_4:140691-140710 None:intergenic 60.0%
CCGAGCTGCCTTCGTAGTGT+GGG - chr4_4:140688-140707 Msa0662450:intron 60.0%
GCACATGGCGTTCGAGAGCA+TGG - chr4_4:143399-143418 Msa0662450:CDS 60.0%
TTCAACGGCGAGGTCGACGG+AGG + chr4_4:138465-138484 None:intergenic 65.0%
! GACGGCAAGGTGGCGGTGTG+AGG + chr4_4:138441-138460 None:intergenic 70.0%
CGGAGGAGACGGCAAGGTGG+CGG + chr4_4:138448-138467 None:intergenic 70.0%
CGACGGAGGAGACGGCAAGG+TGG + chr4_4:138451-138470 None:intergenic 70.0%
GGTCGACGGAGGAGACGGCA+AGG + chr4_4:138454-138473 None:intergenic 70.0%
GGCGAGGTCGACGGAGGAGA+CGG + chr4_4:138459-138478 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 138383 144333 138383 ID=Msa0662450;Name=Msa0662450
chr4_4 mRNA 138383 144333 138383 ID=Msa0662450-mRNA-1;Parent=Msa0662450;Name=Msa0662450-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.62|0.64|1|0.37|0.41|17|1038|323
chr4_4 exon 138383 138754 138383 ID=Msa0662450-mRNA-1:exon:85;Parent=Msa0662450-mRNA-1
chr4_4 exon 139296 139377 139296 ID=Msa0662450-mRNA-1:exon:84;Parent=Msa0662450-mRNA-1
chr4_4 exon 139469 139538 139469 ID=Msa0662450-mRNA-1:exon:83;Parent=Msa0662450-mRNA-1
chr4_4 exon 139865 139925 139865 ID=Msa0662450-mRNA-1:exon:82;Parent=Msa0662450-mRNA-1
chr4_4 exon 140046 140562 140046 ID=Msa0662450-mRNA-1:exon:81;Parent=Msa0662450-mRNA-1
chr4_4 exon 140774 140841 140774 ID=Msa0662450-mRNA-1:exon:80;Parent=Msa0662450-mRNA-1
chr4_4 exon 140940 141007 140940 ID=Msa0662450-mRNA-1:exon:79;Parent=Msa0662450-mRNA-1
chr4_4 exon 141426 141477 141426 ID=Msa0662450-mRNA-1:exon:78;Parent=Msa0662450-mRNA-1
chr4_4 exon 141647 141653 141647 ID=Msa0662450-mRNA-1:exon:77;Parent=Msa0662450-mRNA-1
chr4_4 exon 141873 141944 141873 ID=Msa0662450-mRNA-1:exon:76;Parent=Msa0662450-mRNA-1
chr4_4 exon 142163 142222 142163 ID=Msa0662450-mRNA-1:exon:75;Parent=Msa0662450-mRNA-1
chr4_4 exon 142237 142243 142237 ID=Msa0662450-mRNA-1:exon:74;Parent=Msa0662450-mRNA-1
chr4_4 exon 142688 142810 142688 ID=Msa0662450-mRNA-1:exon:73;Parent=Msa0662450-mRNA-1
chr4_4 exon 143171 143309 143171 ID=Msa0662450-mRNA-1:exon:72;Parent=Msa0662450-mRNA-1
chr4_4 exon 143392 143479 143392 ID=Msa0662450-mRNA-1:exon:71;Parent=Msa0662450-mRNA-1
chr4_4 exon 143561 143591 143561 ID=Msa0662450-mRNA-1:exon:70;Parent=Msa0662450-mRNA-1
chr4_4 exon 144141 144333 144141 ID=Msa0662450-mRNA-1:exon:69;Parent=Msa0662450-mRNA-1
chr4_4 CDS 144141 144333 144141 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 143561 143591 143561 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 143392 143479 143392 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 143171 143309 143171 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 142688 142810 142688 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 142237 142243 142237 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 142163 142222 142163 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 141873 141944 141873 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 141647 141653 141647 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 141426 141477 141426 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 140940 141007 140940 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 140774 140841 140774 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 CDS 140499 140562 140499 ID=Msa0662450-mRNA-1:cds;Parent=Msa0662450-mRNA-1
chr4_4 three_prime_UTR 140046 140498 140046 ID=Msa0662450-mRNA-1:three_prime_utr;Parent=Msa0662450-mRNA-1
chr4_4 three_prime_UTR 139865 139925 139865 ID=Msa0662450-mRNA-1:three_prime_utr;Parent=Msa0662450-mRNA-1
chr4_4 three_prime_UTR 139469 139538 139469 ID=Msa0662450-mRNA-1:three_prime_utr;Parent=Msa0662450-mRNA-1
chr4_4 three_prime_UTR 139296 139377 139296 ID=Msa0662450-mRNA-1:three_prime_utr;Parent=Msa0662450-mRNA-1
chr4_4 three_prime_UTR 138383 138754 138383 ID=Msa0662450-mRNA-1:three_prime_utr;Parent=Msa0662450-mRNA-1
Gene Sequence

>Msa0662450

TTCAGTCCGGTTCTCTTCTCCTCACACGGTAAACAAAAAAACGGGTTCTCTTCTTCCTCACACCGCCACCTTGCCGTCTCCTCCGTCGACCTCGCCGTTGAACACACCAATCTCCACCGTTTTCTTCTTTCTCAGTGTGCGACGTCTTCTTCGTTTTGCTTCTTCTTCCGTTTGTCTCTATCATCAATCAAAGGTGGATTTAACACAGCTCATGTTGCTGCTAGAGCCTATGATCGAGCTGCGATTAAATTCAGGGGAGTTGGTGCTTACATAAATTTCAATTTGAATGATTATGATGATGATCTTAAACAGACGAAGAATTTATCGAAAGATGAGTCTTTGCAAACACTTCGTCTACAAATCAATGTTTTCTCAAGAGGGAGTTCGAAGTACAGAGGAGTAACACTGCACAAATGTGGCAGTTGGGAAGCTCGAATGGGTCAATTCCTTGGCCAAAACATCAGGAAGTTGTTTAAGGATGGCTTCATTATCAGGAAGCCAACTAAGATTCACTCCCTATCCTGTGCTAGGAACATGAAGGAGGCCAAGAGGAAGGGACGTCATTCTAGATATGATGTGTCCGTTATAGGTCTAGCAGCCGCTAAAGTAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACGGCAAATGGAGATTTCTTAAATGCAGACGTTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGAAATTTTATGGACAATGAATTTGAGGATGGACAAGCAACTTCTGATATGATGGCAAGCAGTGTGACATCAAACACAGATGCCGCACAGCTTGCAGAAACATTTGTTGTTGCAAAATGCCCTACAAAGTTCATATTGGCATGGCAGCAAAGTGCAAAATCAGGCTCTACTATTGGCATTGATTCTTCCCTTAAGAGCTATGAGAGGGAGCGAAGATTACGAGTTACTATTGTTTATGGAATGGCTAGGTTGTGCAGCTAA
Protein sequence

>Msa0662450

FSPVLFSSHGKQKNGFSSSSHRHLAVSSVDLAVEHTNLHRFLLSQCATSSSFCFFFRLSLSSIKGGFNTAHVAARAYDRAAIKFRGVGAYINFNLNDYDDDLKQTKNLSKDESLQTLRLQINVFSRGSSKYRGVTLHKCGSWEARMGQFLGQNIRKLFKDGFIIRKPTKIHSLSCARNMKEAKRKGRHSRYDVSVIGLAAAKVAGMKCIVTKSGYTANGDFLNADVVFDFIGDPPEERNFMDNEFEDGQATSDMMASSVTSNTDAAQLAETFVVAKCPTKFILAWQQSAKSGSTIGIDSSLKSYERERRLRVTIVYGMARLCS*