Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110420 | RHN78664.1 | 81.604 | 424 | 25 | 5 | 1 | 380 | 1 | 415 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110420 | A0A396JN85 | 81.604 | 424 | 25 | 5 | 1 | 380 | 1 | 415 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110420 | Msa1445870 | 0.827268 | 1.717931e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110420 | MtrunA17_Chr1g0168401 | 81.604 | 424 | 25 | 5 | 1 | 380 | 1 | 415 | 0.0 | 540 |
| Msa0110420 | MtrunA17_Chr1g0186171 | 53.986 | 439 | 118 | 15 | 1 | 380 | 1 | 414 | 6.57e-122 | 358 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110420 | AT1G04500.3 | 39.302 | 430 | 149 | 14 | 9 | 380 | 2 | 377 | 6.27e-74 | 234 |
| Msa0110420 | AT1G04500.4 | 39.671 | 426 | 145 | 14 | 13 | 380 | 15 | 386 | 7.19e-74 | 235 |
| Msa0110420 | AT1G04500.1 | 39.671 | 426 | 145 | 14 | 13 | 380 | 15 | 386 | 7.19e-74 | 235 |
| Msa0110420 | AT2G33350.5 | 39.503 | 443 | 165 | 14 | 2 | 380 | 15 | 418 | 1.34e-69 | 224 |
| Msa0110420 | AT2G33350.4 | 39.583 | 432 | 158 | 14 | 13 | 380 | 6 | 398 | 4.30e-68 | 220 |
| Msa0110420 | AT2G33350.2 | 39.679 | 436 | 152 | 15 | 13 | 380 | 17 | 409 | 5.01e-68 | 220 |
| Msa0110420 | AT2G33350.1 | 39.683 | 441 | 146 | 15 | 13 | 380 | 17 | 410 | 2.81e-67 | 218 |
| Msa0110420 | AT1G04500.2 | 40.909 | 352 | 138 | 12 | 13 | 348 | 15 | 312 | 6.62e-62 | 204 |
| Msa0110420 | AT2G33350.3 | 40.947 | 359 | 144 | 14 | 13 | 346 | 17 | 332 | 6.38e-57 | 189 |
Find 55 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGAGATATGTTGTTTA+AGG | 0.115598 | 1_3:-23280873 | None:intergenic |
| GGAAAGGTTGTTATTATTAT+TGG | 0.150644 | 1_3:-23281017 | None:intergenic |
| ACACAACCTCATCATCTTTC+TGG | 0.167128 | 1_3:+23281175 | Msa0110420:CDS |
| GCTGATAGTTCTAGCTTATT+TGG | 0.217917 | 1_3:+23281382 | Msa0110420:CDS |
| TTGGATTATCAAGGTGAAAA+TGG | 0.259352 | 1_3:+23281445 | Msa0110420:CDS |
| TCCTCCAAGTGTGAAATTTC+TGG | 0.285986 | 1_3:-23282242 | None:intergenic |
| TTTGGTGGAGGGATTCTATT+AGG | 0.306595 | 1_3:+23281400 | Msa0110420:CDS |
| TGAAATGCAGACACAAGATT+TGG | 0.326244 | 1_3:+23281426 | Msa0110420:CDS |
| CTATATCAGAAGTGTACTTT+TGG | 0.332784 | 1_3:+23281697 | Msa0110420:CDS |
| TTCTTGTGAATCAAAGATAA+TGG | 0.355504 | 1_3:-23281038 | None:intergenic |
| CATCATCTTTCTGGTTTGAA+AGG | 0.369735 | 1_3:+23281184 | Msa0110420:CDS |
| TTGTACAGATTCTGTTCAAC+AGG | 0.388571 | 1_3:+23281477 | Msa0110420:CDS |
| GAGGACTCTTCTTTGAAAGT+TGG | 0.400610 | 1_3:+23282260 | Msa0110420:CDS |
| TCTTGTTCTTATCTTAGTAA+TGG | 0.420390 | 1_3:+23281319 | Msa0110420:CDS |
| TGTTAAAGAAGAAGATGATA+TGG | 0.428400 | 1_3:+23282808 | Msa0110420:CDS |
| TTGTTAACATTGTTTGTGGT+AGG | 0.435899 | 1_3:-23280977 | None:intergenic |
| TGTTCTTGATGAGTTGTTAT+CGG | 0.437627 | 1_3:-23281133 | None:intergenic |
| TCTTATCTTAGTAATGGCTT+AGG | 0.445374 | 1_3:+23281325 | Msa0110420:CDS |
| ATAGGATCAGTTTGATATTG+TGG | 0.454553 | 1_3:-23281211 | None:intergenic |
| GATAGTTCTAGCTTATTTGG+TGG | 0.459834 | 1_3:+23281385 | Msa0110420:CDS |
| TGGAAGTTGTTCTGCCACTT+TGG | 0.463869 | 1_3:+23282217 | Msa0110420:CDS |
| TCAAACTGATCCTATATCTT+CGG | 0.472302 | 1_3:+23281219 | Msa0110420:CDS |
| GGTGTGTATCATGGAAATCT+TGG | 0.472409 | 1_3:+23281346 | Msa0110420:CDS |
| ATCATCTTTCTGGTTTGAAA+GGG | 0.478809 | 1_3:+23281185 | Msa0110420:CDS |
| GGCACCAGAAATTTCACACT+TGG | 0.479570 | 1_3:+23282238 | Msa0110420:CDS |
| AGTTCTAGCTTATTTGGTGG+AGG | 0.485926 | 1_3:+23281388 | Msa0110420:CDS |
| ACCAGAAATTTCACACTTGG+AGG | 0.486593 | 1_3:+23282241 | Msa0110420:CDS |
| AGCGGTGCTGCCGAAGATAT+AGG | 0.487136 | 1_3:-23281229 | None:intergenic |
| ACACAAGATTTGGATTATCA+AGG | 0.487381 | 1_3:+23281436 | Msa0110420:CDS |
| ATCATACCTGAAAATCTTGA+GGG | 0.501022 | 1_3:-23281507 | None:intergenic |
| GATGGAATAGTTGCATTTGA+AGG | 0.501927 | 1_3:-23282873 | None:intergenic |
| GAACAAGAAGGAGAATAAGA+AGG | 0.504833 | 1_3:-23281304 | None:intergenic |
| GATGTTGTTAACATTGTTTG+TGG | 0.505534 | 1_3:-23280981 | None:intergenic |
| CACAAACTAGTATCTGGTGC+TGG | 0.507442 | 1_3:+23282197 | Msa0110420:intron |
| GAAAACTTTCTGTTGAGCAA+AGG | 0.518365 | 1_3:+23282282 | Msa0110420:CDS |
| TGTTAACATTGTTTGTGGTA+GGG | 0.519810 | 1_3:-23280976 | None:intergenic |
| GATTATCAAGGTGAAAATGG+TGG | 0.531561 | 1_3:+23281448 | Msa0110420:CDS |
| GATCATACCTGAAAATCTTG+AGG | 0.542555 | 1_3:-23281508 | None:intergenic |
| GTTCTAGCTTATTTGGTGGA+GGG | 0.546863 | 1_3:+23281389 | Msa0110420:CDS |
| AATGGCTTAGGTGTGTATCA+TGG | 0.554708 | 1_3:+23281337 | Msa0110420:CDS |
| AATTGTTAAAAGATTAGAAG+AGG | 0.560819 | 1_3:+23281674 | Msa0110420:intron |
| AATTCAAATCAATGAGTGGA+TGG | 0.563218 | 1_3:-23282891 | None:intergenic |
| CAATCATCTTCAAATACAGA+AGG | 0.568846 | 1_3:-23281268 | None:intergenic |
| AAATTTCAGCAAGAAAATCA+AGG | 0.584947 | 1_3:+23282346 | Msa0110420:CDS |
| GATATCTTTGCACATATCAG+TGG | 0.587582 | 1_3:+23282842 | Msa0110420:CDS |
| TTCAAACCAGAAAGATGATG+AGG | 0.600906 | 1_3:-23281181 | None:intergenic |
| CATTAATTCAAATCAATGAG+TGG | 0.603791 | 1_3:-23282895 | None:intergenic |
| TTACTAAGATAAGAACAAGA+AGG | 0.626377 | 1_3:-23281316 | None:intergenic |
| GTGAATCAAAGATAATGGAA+AGG | 0.627025 | 1_3:-23281033 | None:intergenic |
| TGAGTTGTTATCGGAAGAAG+CGG | 0.627559 | 1_3:-23281124 | None:intergenic |
| TGAAATTTCTGGTGCCAAAG+TGG | 0.631400 | 1_3:-23282231 | None:intergenic |
| AATCATCTTCAAATACAGAA+GGG | 0.635264 | 1_3:-23281267 | None:intergenic |
| GGGAGTGAAGCACTCATAAG+CGG | 0.643710 | 1_3:-23281247 | None:intergenic |
| GTTGTTATCGGAAGAAGCGG+CGG | 0.673069 | 1_3:-23281121 | None:intergenic |
| GATATGTGCAAAGATATCTG+AGG | 0.713563 | 1_3:-23282837 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAAAATACTTTTGATT+TGG | + | chr1_3:23281796-23281815 | Msa0110420:intron | 10.0% |
| !!! | ATAATTGTATTTTCTTTTAT+AGG | + | chr1_3:23282157-23282176 | Msa0110420:intron | 10.0% |
| !!! | ATTAAAAAATACTTTTGATT+TGG | + | chr1_3:23281796-23281815 | Msa0110420:intron | 10.0% |
| !!! | ATAATTGTATTTTCTTTTAT+AGG | + | chr1_3:23282157-23282176 | Msa0110420:intron | 10.0% |
| !! | TCTTATTATAGAAGATATTA+TGG | + | chr1_3:23281574-23281593 | Msa0110420:intron | 15.0% |
| !!! | TTTTTATTATCAACTTAAAG+TGG | - | chr1_3:23281840-23281859 | None:intergenic | 15.0% |
| !!! | ATCGTTTTGTTAAATAAATT+TGG | - | chr1_3:23282600-23282619 | None:intergenic | 15.0% |
| !! | TCTTATTATAGAAGATATTA+TGG | + | chr1_3:23281574-23281593 | Msa0110420:intron | 15.0% |
| !!! | TTTTTATTATCAACTTAAAG+TGG | - | chr1_3:23281840-23281859 | None:intergenic | 15.0% |
| !!! | ATCGTTTTGTTAAATAAATT+TGG | - | chr1_3:23282600-23282619 | None:intergenic | 15.0% |
| !! | AAATCAAGGAAAATTTAACA+AGG | - | chr1_3:23281555-23281574 | None:intergenic | 20.0% |
| !! | TCTTCTATAATAAGAAATCA+AGG | - | chr1_3:23281569-23281588 | None:intergenic | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+AGG | - | chr1_3:23281626-23281645 | None:intergenic | 20.0% |
| !! | AATTGTTAAAAGATTAGAAG+AGG | + | chr1_3:23281674-23281693 | Msa0110420:intron | 20.0% |
| !! | TTGTTAAATAAATTTGGCTA+GGG | - | chr1_3:23282594-23282613 | None:intergenic | 20.0% |
| !! | TTTGTTAAATAAATTTGGCT+AGG | - | chr1_3:23282595-23282614 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTCAATTATTTGA+TGG | + | chr1_3:23282737-23282756 | Msa0110420:intron | 20.0% |
| !! | ATACCATCAAATAATTGAAA+AGG | - | chr1_3:23282743-23282762 | None:intergenic | 20.0% |
| !! | AAATCAAGGAAAATTTAACA+AGG | - | chr1_3:23281555-23281574 | None:intergenic | 20.0% |
| !! | TCTTCTATAATAAGAAATCA+AGG | - | chr1_3:23281569-23281588 | None:intergenic | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+AGG | - | chr1_3:23281626-23281645 | None:intergenic | 20.0% |
| !! | AATTGTTAAAAGATTAGAAG+AGG | + | chr1_3:23281674-23281693 | Msa0110420:intron | 20.0% |
| !! | TTGTTAAATAAATTTGGCTA+GGG | - | chr1_3:23282594-23282613 | None:intergenic | 20.0% |
| !! | TTTGTTAAATAAATTTGGCT+AGG | - | chr1_3:23282595-23282614 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTCAATTATTTGA+TGG | + | chr1_3:23282737-23282756 | Msa0110420:intron | 20.0% |
| !! | ATACCATCAAATAATTGAAA+AGG | - | chr1_3:23282743-23282762 | None:intergenic | 20.0% |
| ! | TCAAAAATTTGTGCACTAAT+TGG | - | chr1_3:23280749-23280768 | None:intergenic | 25.0% |
| !! | GGAAAGGTTGTTATTATTAT+TGG | - | chr1_3:23281020-23281039 | None:intergenic | 25.0% |
| ! | TTCTTGTGAATCAAAGATAA+TGG | - | chr1_3:23281041-23281060 | None:intergenic | 25.0% |
| ! | AATCATCTTCAAATACAGAA+GGG | - | chr1_3:23281270-23281289 | None:intergenic | 25.0% |
| ! | TTACTAAGATAAGAACAAGA+AGG | - | chr1_3:23281319-23281338 | None:intergenic | 25.0% |
| ! | TCTTGTTCTTATCTTAGTAA+TGG | + | chr1_3:23281319-23281338 | Msa0110420:CDS | 25.0% |
| !! | ATTTTTACTTTGTATGTAGG+TGG | - | chr1_3:23281623-23281642 | None:intergenic | 25.0% |
| !! | TATTTTCTTTTATAGGCACT+TGG | + | chr1_3:23282164-23282183 | Msa0110420:intron | 25.0% |
| ! | AAATTTCAGCAAGAAAATCA+AGG | + | chr1_3:23282346-23282365 | Msa0110420:CDS | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1_3:23282514-23282533 | Msa0110420:intron | 25.0% |
| ! | AAAAAATACTGAAAGTGATG+TGG | - | chr1_3:23282716-23282735 | None:intergenic | 25.0% |
| ! | TGTTAAAGAAGAAGATGATA+TGG | + | chr1_3:23282808-23282827 | Msa0110420:CDS | 25.0% |
| ! | TCAAAAATTTGTGCACTAAT+TGG | - | chr1_3:23280749-23280768 | None:intergenic | 25.0% |
| !! | GGAAAGGTTGTTATTATTAT+TGG | - | chr1_3:23281020-23281039 | None:intergenic | 25.0% |
| ! | TTCTTGTGAATCAAAGATAA+TGG | - | chr1_3:23281041-23281060 | None:intergenic | 25.0% |
| ! | AATCATCTTCAAATACAGAA+GGG | - | chr1_3:23281270-23281289 | None:intergenic | 25.0% |
| ! | TTACTAAGATAAGAACAAGA+AGG | - | chr1_3:23281319-23281338 | None:intergenic | 25.0% |
| ! | TCTTGTTCTTATCTTAGTAA+TGG | + | chr1_3:23281319-23281338 | Msa0110420:CDS | 25.0% |
| !! | ATTTTTACTTTGTATGTAGG+TGG | - | chr1_3:23281623-23281642 | None:intergenic | 25.0% |
| !! | TATTTTCTTTTATAGGCACT+TGG | + | chr1_3:23282164-23282183 | Msa0110420:intron | 25.0% |
| ! | AAATTTCAGCAAGAAAATCA+AGG | + | chr1_3:23282346-23282365 | Msa0110420:CDS | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1_3:23282514-23282533 | Msa0110420:intron | 25.0% |
| ! | AAAAAATACTGAAAGTGATG+TGG | - | chr1_3:23282716-23282735 | None:intergenic | 25.0% |
| ! | TGTTAAAGAAGAAGATGATA+TGG | + | chr1_3:23282808-23282827 | Msa0110420:CDS | 25.0% |
| GAGAGTCTTGGAAAAAATTA+GGG | - | chr1_3:23280781-23280800 | None:intergenic | 30.0% | |
| AGAGAGTCTTGGAAAAAATT+AGG | - | chr1_3:23280782-23280801 | None:intergenic | 30.0% | |
| !! | AATTTTGTTGTAGAGAGTCT+TGG | - | chr1_3:23280793-23280812 | None:intergenic | 30.0% |
| ! | AGCTTGAGATATGTTGTTTA+AGG | - | chr1_3:23280876-23280895 | None:intergenic | 30.0% |
| TGTTAACATTGTTTGTGGTA+GGG | - | chr1_3:23280979-23280998 | None:intergenic | 30.0% | |
| TTGTTAACATTGTTTGTGGT+AGG | - | chr1_3:23280980-23280999 | None:intergenic | 30.0% | |
| GATGTTGTTAACATTGTTTG+TGG | - | chr1_3:23280984-23281003 | None:intergenic | 30.0% | |
| !! | GTGAATCAAAGATAATGGAA+AGG | - | chr1_3:23281036-23281055 | None:intergenic | 30.0% |
| TGTTCTTGATGAGTTGTTAT+CGG | - | chr1_3:23281136-23281155 | None:intergenic | 30.0% | |
| !! | ATCATCTTTCTGGTTTGAAA+GGG | + | chr1_3:23281185-23281204 | Msa0110420:CDS | 30.0% |
| ATAGGATCAGTTTGATATTG+TGG | - | chr1_3:23281214-23281233 | None:intergenic | 30.0% | |
| TCAAACTGATCCTATATCTT+CGG | + | chr1_3:23281219-23281238 | Msa0110420:CDS | 30.0% | |
| CAATCATCTTCAAATACAGA+AGG | - | chr1_3:23281271-23281290 | None:intergenic | 30.0% | |
| TCTTATCTTAGTAATGGCTT+AGG | + | chr1_3:23281325-23281344 | Msa0110420:CDS | 30.0% | |
| ACACAAGATTTGGATTATCA+AGG | + | chr1_3:23281436-23281455 | Msa0110420:CDS | 30.0% | |
| TTGGATTATCAAGGTGAAAA+TGG | + | chr1_3:23281445-23281464 | Msa0110420:CDS | 30.0% | |
| ! | TTTTAACCCTCAAGATTTTC+AGG | + | chr1_3:23281501-23281520 | Msa0110420:CDS | 30.0% |
| ATCATACCTGAAAATCTTGA+GGG | - | chr1_3:23281510-23281529 | None:intergenic | 30.0% | |
| !! | CTATATCAGAAGTGTACTTT+TGG | + | chr1_3:23281697-23281716 | Msa0110420:CDS | 30.0% |
| GAAAAGACCATCTTTATGAT+TGG | + | chr1_3:23281891-23281910 | Msa0110420:intron | 30.0% | |
| CATTGAACCAATCATAAAGA+TGG | - | chr1_3:23281901-23281920 | None:intergenic | 30.0% | |
| ATGTCTAACATCAACATATG+TGG | - | chr1_3:23282068-23282087 | None:intergenic | 30.0% | |
| TGTTAGACATTGATACATGT+TGG | + | chr1_3:23282078-23282097 | Msa0110420:intron | 30.0% | |
| !! | ATGATTTTGGAGAGAATCAT+AGG | + | chr1_3:23282527-23282546 | Msa0110420:intron | 30.0% |
| TTACTTCATCTTCATCTTCA+TGG | - | chr1_3:23282567-23282586 | None:intergenic | 30.0% | |
| ! | TCATTTTACAATTGTTCTCG+AGG | + | chr1_3:23282628-23282647 | Msa0110420:intron | 30.0% |
| ATCTGCAAGTACAAAATGAA+AGG | - | chr1_3:23282785-23282804 | None:intergenic | 30.0% | |
| GAGAGTCTTGGAAAAAATTA+GGG | - | chr1_3:23280781-23280800 | None:intergenic | 30.0% | |
| AGAGAGTCTTGGAAAAAATT+AGG | - | chr1_3:23280782-23280801 | None:intergenic | 30.0% | |
| !! | AATTTTGTTGTAGAGAGTCT+TGG | - | chr1_3:23280793-23280812 | None:intergenic | 30.0% |
| ! | AGCTTGAGATATGTTGTTTA+AGG | - | chr1_3:23280876-23280895 | None:intergenic | 30.0% |
| TGTTAACATTGTTTGTGGTA+GGG | - | chr1_3:23280979-23280998 | None:intergenic | 30.0% | |
| TTGTTAACATTGTTTGTGGT+AGG | - | chr1_3:23280980-23280999 | None:intergenic | 30.0% | |
| GATGTTGTTAACATTGTTTG+TGG | - | chr1_3:23280984-23281003 | None:intergenic | 30.0% | |
| !! | GTGAATCAAAGATAATGGAA+AGG | - | chr1_3:23281036-23281055 | None:intergenic | 30.0% |
| TGTTCTTGATGAGTTGTTAT+CGG | - | chr1_3:23281136-23281155 | None:intergenic | 30.0% | |
| !! | ATCATCTTTCTGGTTTGAAA+GGG | + | chr1_3:23281185-23281204 | Msa0110420:CDS | 30.0% |
| ATAGGATCAGTTTGATATTG+TGG | - | chr1_3:23281214-23281233 | None:intergenic | 30.0% | |
| TCAAACTGATCCTATATCTT+CGG | + | chr1_3:23281219-23281238 | Msa0110420:CDS | 30.0% | |
| CAATCATCTTCAAATACAGA+AGG | - | chr1_3:23281271-23281290 | None:intergenic | 30.0% | |
| TCTTATCTTAGTAATGGCTT+AGG | + | chr1_3:23281325-23281344 | Msa0110420:CDS | 30.0% | |
| ACACAAGATTTGGATTATCA+AGG | + | chr1_3:23281436-23281455 | Msa0110420:CDS | 30.0% | |
| TTGGATTATCAAGGTGAAAA+TGG | + | chr1_3:23281445-23281464 | Msa0110420:CDS | 30.0% | |
| ! | TTTTAACCCTCAAGATTTTC+AGG | + | chr1_3:23281501-23281520 | Msa0110420:CDS | 30.0% |
| ATCATACCTGAAAATCTTGA+GGG | - | chr1_3:23281510-23281529 | None:intergenic | 30.0% | |
| !! | CTATATCAGAAGTGTACTTT+TGG | + | chr1_3:23281697-23281716 | Msa0110420:CDS | 30.0% |
| GAAAAGACCATCTTTATGAT+TGG | + | chr1_3:23281891-23281910 | Msa0110420:intron | 30.0% | |
| CATTGAACCAATCATAAAGA+TGG | - | chr1_3:23281901-23281920 | None:intergenic | 30.0% | |
| ATGTCTAACATCAACATATG+TGG | - | chr1_3:23282068-23282087 | None:intergenic | 30.0% | |
| TGTTAGACATTGATACATGT+TGG | + | chr1_3:23282078-23282097 | Msa0110420:intron | 30.0% | |
| !! | ATGATTTTGGAGAGAATCAT+AGG | + | chr1_3:23282527-23282546 | Msa0110420:intron | 30.0% |
| TTACTTCATCTTCATCTTCA+TGG | - | chr1_3:23282567-23282586 | None:intergenic | 30.0% | |
| ! | TCATTTTACAATTGTTCTCG+AGG | + | chr1_3:23282628-23282647 | Msa0110420:intron | 30.0% |
| ATCTGCAAGTACAAAATGAA+AGG | - | chr1_3:23282785-23282804 | None:intergenic | 30.0% | |
| TTCAAACCAGAAAGATGATG+AGG | - | chr1_3:23281184-23281203 | None:intergenic | 35.0% | |
| !! | CATCATCTTTCTGGTTTGAA+AGG | + | chr1_3:23281184-23281203 | Msa0110420:CDS | 35.0% |
| GAACAAGAAGGAGAATAAGA+AGG | - | chr1_3:23281307-23281326 | None:intergenic | 35.0% | |
| !! | GCTGATAGTTCTAGCTTATT+TGG | + | chr1_3:23281382-23281401 | Msa0110420:CDS | 35.0% |
| !! | GATAGTTCTAGCTTATTTGG+TGG | + | chr1_3:23281385-23281404 | Msa0110420:CDS | 35.0% |
| TGAAATGCAGACACAAGATT+TGG | + | chr1_3:23281426-23281445 | Msa0110420:CDS | 35.0% | |
| GATTATCAAGGTGAAAATGG+TGG | + | chr1_3:23281448-23281467 | Msa0110420:CDS | 35.0% | |
| TTGTACAGATTCTGTTCAAC+AGG | + | chr1_3:23281477-23281496 | Msa0110420:CDS | 35.0% | |
| GATCATACCTGAAAATCTTG+AGG | - | chr1_3:23281511-23281530 | None:intergenic | 35.0% | |
| !! | GTACTTTTGGTTAAAGCTCA+TGG | + | chr1_3:23281710-23281729 | Msa0110420:CDS | 35.0% |
| !! | TTTGATTTGGCCTAGTAGAA+AGG | + | chr1_3:23281809-23281828 | Msa0110420:intron | 35.0% |
| AGTGGTTATTCCTTTCTACT+AGG | - | chr1_3:23281822-23281841 | None:intergenic | 35.0% | |
| !! | ACGTCATCGATTTGAAGTAT+CGG | + | chr1_3:23282110-23282129 | Msa0110420:intron | 35.0% |
| GAGAATCACAAACTAGTATC+TGG | + | chr1_3:23282191-23282210 | Msa0110420:intron | 35.0% | |
| GAAAACTTTCTGTTGAGCAA+AGG | + | chr1_3:23282282-23282301 | Msa0110420:CDS | 35.0% | |
| GTTGAACATTTCAGAGTCTA+GGG | - | chr1_3:23282669-23282688 | None:intergenic | 35.0% | |
| AGTTGAACATTTCAGAGTCT+AGG | - | chr1_3:23282670-23282689 | None:intergenic | 35.0% | |
| GATATGTGCAAAGATATCTG+AGG | - | chr1_3:23282840-23282859 | None:intergenic | 35.0% | |
| GATATCTTTGCACATATCAG+TGG | + | chr1_3:23282842-23282861 | Msa0110420:CDS | 35.0% | |
| GATGGAATAGTTGCATTTGA+AGG | - | chr1_3:23282876-23282895 | None:intergenic | 35.0% | |
| TTCAAACCAGAAAGATGATG+AGG | - | chr1_3:23281184-23281203 | None:intergenic | 35.0% | |
| !! | CATCATCTTTCTGGTTTGAA+AGG | + | chr1_3:23281184-23281203 | Msa0110420:CDS | 35.0% |
| GAACAAGAAGGAGAATAAGA+AGG | - | chr1_3:23281307-23281326 | None:intergenic | 35.0% | |
| !! | GCTGATAGTTCTAGCTTATT+TGG | + | chr1_3:23281382-23281401 | Msa0110420:CDS | 35.0% |
| !! | GATAGTTCTAGCTTATTTGG+TGG | + | chr1_3:23281385-23281404 | Msa0110420:CDS | 35.0% |
| TGAAATGCAGACACAAGATT+TGG | + | chr1_3:23281426-23281445 | Msa0110420:CDS | 35.0% | |
| GATTATCAAGGTGAAAATGG+TGG | + | chr1_3:23281448-23281467 | Msa0110420:CDS | 35.0% | |
| TTGTACAGATTCTGTTCAAC+AGG | + | chr1_3:23281477-23281496 | Msa0110420:CDS | 35.0% | |
| GATCATACCTGAAAATCTTG+AGG | - | chr1_3:23281511-23281530 | None:intergenic | 35.0% | |
| !! | GTACTTTTGGTTAAAGCTCA+TGG | + | chr1_3:23281710-23281729 | Msa0110420:CDS | 35.0% |
| !! | TTTGATTTGGCCTAGTAGAA+AGG | + | chr1_3:23281809-23281828 | Msa0110420:intron | 35.0% |
| AGTGGTTATTCCTTTCTACT+AGG | - | chr1_3:23281822-23281841 | None:intergenic | 35.0% | |
| !! | ACGTCATCGATTTGAAGTAT+CGG | + | chr1_3:23282110-23282129 | Msa0110420:intron | 35.0% |
| GAGAATCACAAACTAGTATC+TGG | + | chr1_3:23282191-23282210 | Msa0110420:intron | 35.0% | |
| GAAAACTTTCTGTTGAGCAA+AGG | + | chr1_3:23282282-23282301 | Msa0110420:CDS | 35.0% | |
| GTTGAACATTTCAGAGTCTA+GGG | - | chr1_3:23282669-23282688 | None:intergenic | 35.0% | |
| AGTTGAACATTTCAGAGTCT+AGG | - | chr1_3:23282670-23282689 | None:intergenic | 35.0% | |
| GATATGTGCAAAGATATCTG+AGG | - | chr1_3:23282840-23282859 | None:intergenic | 35.0% | |
| GATATCTTTGCACATATCAG+TGG | + | chr1_3:23282842-23282861 | Msa0110420:CDS | 35.0% | |
| GATGGAATAGTTGCATTTGA+AGG | - | chr1_3:23282876-23282895 | None:intergenic | 35.0% | |
| ! | GTTTTTATGTCACACACTGC+AGG | + | chr1_3:23280709-23280728 | Msa0110420:CDS | 40.0% |
| TGAGTTGTTATCGGAAGAAG+CGG | - | chr1_3:23281127-23281146 | None:intergenic | 40.0% | |
| ACACAACCTCATCATCTTTC+TGG | + | chr1_3:23281175-23281194 | Msa0110420:CDS | 40.0% | |
| AATGGCTTAGGTGTGTATCA+TGG | + | chr1_3:23281337-23281356 | Msa0110420:CDS | 40.0% | |
| GGTGTGTATCATGGAAATCT+TGG | + | chr1_3:23281346-23281365 | Msa0110420:CDS | 40.0% | |
| !! | AGTTCTAGCTTATTTGGTGG+AGG | + | chr1_3:23281388-23281407 | Msa0110420:CDS | 40.0% |
| !! | GTTCTAGCTTATTTGGTGGA+GGG | + | chr1_3:23281389-23281408 | Msa0110420:CDS | 40.0% |
| TTTGGTGGAGGGATTCTATT+AGG | + | chr1_3:23281400-23281419 | Msa0110420:CDS | 40.0% | |
| !! | TGAAATTTCTGGTGCCAAAG+TGG | - | chr1_3:23282234-23282253 | None:intergenic | 40.0% |
| ACCAGAAATTTCACACTTGG+AGG | + | chr1_3:23282241-23282260 | Msa0110420:CDS | 40.0% | |
| TCCTCCAAGTGTGAAATTTC+TGG | - | chr1_3:23282245-23282264 | None:intergenic | 40.0% | |
| ! | GAGGACTCTTCTTTGAAAGT+TGG | + | chr1_3:23282260-23282279 | Msa0110420:CDS | 40.0% |
| ! | GTTTTTATGTCACACACTGC+AGG | + | chr1_3:23280709-23280728 | Msa0110420:CDS | 40.0% |
| TGAGTTGTTATCGGAAGAAG+CGG | - | chr1_3:23281127-23281146 | None:intergenic | 40.0% | |
| ACACAACCTCATCATCTTTC+TGG | + | chr1_3:23281175-23281194 | Msa0110420:CDS | 40.0% | |
| AATGGCTTAGGTGTGTATCA+TGG | + | chr1_3:23281337-23281356 | Msa0110420:CDS | 40.0% | |
| GGTGTGTATCATGGAAATCT+TGG | + | chr1_3:23281346-23281365 | Msa0110420:CDS | 40.0% | |
| !! | AGTTCTAGCTTATTTGGTGG+AGG | + | chr1_3:23281388-23281407 | Msa0110420:CDS | 40.0% |
| !! | GTTCTAGCTTATTTGGTGGA+GGG | + | chr1_3:23281389-23281408 | Msa0110420:CDS | 40.0% |
| TTTGGTGGAGGGATTCTATT+AGG | + | chr1_3:23281400-23281419 | Msa0110420:CDS | 40.0% | |
| !! | TGAAATTTCTGGTGCCAAAG+TGG | - | chr1_3:23282234-23282253 | None:intergenic | 40.0% |
| ACCAGAAATTTCACACTTGG+AGG | + | chr1_3:23282241-23282260 | Msa0110420:CDS | 40.0% | |
| TCCTCCAAGTGTGAAATTTC+TGG | - | chr1_3:23282245-23282264 | None:intergenic | 40.0% | |
| ! | GAGGACTCTTCTTTGAAAGT+TGG | + | chr1_3:23282260-23282279 | Msa0110420:CDS | 40.0% |
| CACAAACTAGTATCTGGTGC+TGG | + | chr1_3:23282197-23282216 | Msa0110420:intron | 45.0% | |
| ! | TGGAAGTTGTTCTGCCACTT+TGG | + | chr1_3:23282217-23282236 | Msa0110420:CDS | 45.0% |
| GGCACCAGAAATTTCACACT+TGG | + | chr1_3:23282238-23282257 | Msa0110420:CDS | 45.0% | |
| TTTGGAGAGAATCATAGGCC+AGG | + | chr1_3:23282532-23282551 | Msa0110420:intron | 45.0% | |
| TCTTCATGGTTGCTACTACC+TGG | - | chr1_3:23282553-23282572 | None:intergenic | 45.0% | |
| CACAAACTAGTATCTGGTGC+TGG | + | chr1_3:23282197-23282216 | Msa0110420:intron | 45.0% | |
| ! | TGGAAGTTGTTCTGCCACTT+TGG | + | chr1_3:23282217-23282236 | Msa0110420:CDS | 45.0% |
| GGCACCAGAAATTTCACACT+TGG | + | chr1_3:23282238-23282257 | Msa0110420:CDS | 45.0% | |
| TTTGGAGAGAATCATAGGCC+AGG | + | chr1_3:23282532-23282551 | Msa0110420:intron | 45.0% | |
| TCTTCATGGTTGCTACTACC+TGG | - | chr1_3:23282553-23282572 | None:intergenic | 45.0% | |
| GTTGTTATCGGAAGAAGCGG+CGG | - | chr1_3:23281124-23281143 | None:intergenic | 50.0% | |
| ! | GGGAGTGAAGCACTCATAAG+CGG | - | chr1_3:23281250-23281269 | None:intergenic | 50.0% |
| GCAAACCTTCCTCTAACTCG+CGG | - | chr1_3:23282499-23282518 | None:intergenic | 50.0% | |
| GTTGTTATCGGAAGAAGCGG+CGG | - | chr1_3:23281124-23281143 | None:intergenic | 50.0% | |
| ! | GGGAGTGAAGCACTCATAAG+CGG | - | chr1_3:23281250-23281269 | None:intergenic | 50.0% |
| GCAAACCTTCCTCTAACTCG+CGG | - | chr1_3:23282499-23282518 | None:intergenic | 50.0% | |
| !! | AGCGGTGCTGCCGAAGATAT+AGG | - | chr1_3:23281232-23281251 | None:intergenic | 55.0% |
| TCTAACTCGCGGTCGGCTAT+CGG | - | chr1_3:23282488-23282507 | None:intergenic | 55.0% | |
| ACCTTCCTCTAACTCGCGGT+CGG | - | chr1_3:23282495-23282514 | None:intergenic | 55.0% | |
| !! | AGCGGTGCTGCCGAAGATAT+AGG | - | chr1_3:23281232-23281251 | None:intergenic | 55.0% |
| TCTAACTCGCGGTCGGCTAT+CGG | - | chr1_3:23282488-23282507 | None:intergenic | 55.0% | |
| ACCTTCCTCTAACTCGCGGT+CGG | - | chr1_3:23282495-23282514 | None:intergenic | 55.0% | |
| GATAGCCGACCGCGAGTTAG+AGG | + | chr1_3:23282487-23282506 | Msa0110420:intron | 60.0% | |
| GATAGCCGACCGCGAGTTAG+AGG | + | chr1_3:23282487-23282506 | Msa0110420:intron | 60.0% | |
| GCCGACCGCGAGTTAGAGGA+AGG | + | chr1_3:23282491-23282510 | Msa0110420:intron | 65.0% | |
| GCCGACCGCGAGTTAGAGGA+AGG | + | chr1_3:23282491-23282510 | Msa0110420:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 23280695 | 23282910 | 23280695 | ID=Msa0110420;Name=Msa0110420 |
| chr1_3 | mRNA | 23280695 | 23282910 | 23280695 | ID=Msa0110420-mRNA-1;Parent=Msa0110420;Name=Msa0110420-mRNA-1;_AED=0.10;_eAED=0.14;_QI=0|0|0|0.75|1|1|4|0|380 |
| chr1_3 | exon | 23280695 | 23281522 | 23280695 | ID=Msa0110420-mRNA-1:exon:8156;Parent=Msa0110420-mRNA-1 |
| chr1_3 | exon | 23281686 | 23281731 | 23281686 | ID=Msa0110420-mRNA-1:exon:8157;Parent=Msa0110420-mRNA-1 |
| chr1_3 | exon | 23282207 | 23282367 | 23282207 | ID=Msa0110420-mRNA-1:exon:8158;Parent=Msa0110420-mRNA-1 |
| chr1_3 | exon | 23282803 | 23282910 | 23282803 | ID=Msa0110420-mRNA-1:exon:8159;Parent=Msa0110420-mRNA-1 |
| chr1_3 | CDS | 23280695 | 23281522 | 23280695 | ID=Msa0110420-mRNA-1:cds;Parent=Msa0110420-mRNA-1 |
| chr1_3 | CDS | 23281686 | 23281731 | 23281686 | ID=Msa0110420-mRNA-1:cds;Parent=Msa0110420-mRNA-1 |
| chr1_3 | CDS | 23282207 | 23282367 | 23282207 | ID=Msa0110420-mRNA-1:cds;Parent=Msa0110420-mRNA-1 |
| chr1_3 | CDS | 23282803 | 23282910 | 23282803 | ID=Msa0110420-mRNA-1:cds;Parent=Msa0110420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
