Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445870 | A0A072VH57 | 96.491 | 228 | 6 | 1 | 1 | 226 | 3 | 230 | 7.00e-160 | 451 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1445870 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110420 | Msa1445870 | 0.827268 | 1.717931e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445870 | MtrunA17_Chr1g0168401 | 96.491 | 228 | 6 | 1 | 1 | 226 | 188 | 415 | 1.38e-163 | 457 |
| Msa1445870 | MtrunA17_Chr1g0186171 | 73.729 | 236 | 50 | 5 | 2 | 226 | 180 | 414 | 2.35e-110 | 322 |
| Msa1445870 | MtrunA17_Chr2g0311591 | 45.545 | 101 | 45 | 1 | 74 | 174 | 124 | 214 | 1.08e-22 | 93.2 |
| Msa1445870 | MtrunA17_Chr8g0387241 | 53.846 | 91 | 37 | 2 | 116 | 201 | 211 | 301 | 1.91e-22 | 93.2 |
| Msa1445870 | MtrunA17_Chr5g0397361 | 51.064 | 94 | 38 | 2 | 103 | 188 | 142 | 235 | 4.65e-21 | 88.2 |
| Msa1445870 | MtrunA17_Chr4g0030421 | 57.812 | 64 | 27 | 0 | 115 | 178 | 20 | 83 | 1.21e-20 | 84.0 |
| Msa1445870 | MtrunA17_Chr2g0327621 | 55.072 | 69 | 31 | 0 | 106 | 174 | 131 | 199 | 1.20e-18 | 81.6 |
| Msa1445870 | MtrunA17_Chr1g0147111 | 64.583 | 48 | 17 | 0 | 128 | 175 | 230 | 277 | 2.68e-16 | 75.9 |
| Msa1445870 | MtrunA17_Chr3g0126721 | 65.306 | 49 | 17 | 0 | 126 | 174 | 226 | 274 | 1.47e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445870 | AT1G04500.3 | 54.321 | 243 | 87 | 8 | 5 | 226 | 138 | 377 | 4.07e-77 | 237 |
| Msa1445870 | AT1G04500.4 | 54.321 | 243 | 87 | 8 | 5 | 226 | 147 | 386 | 5.67e-77 | 237 |
| Msa1445870 | AT1G04500.1 | 54.321 | 243 | 87 | 8 | 5 | 226 | 147 | 386 | 5.67e-77 | 237 |
| Msa1445870 | AT2G33350.4 | 56.540 | 237 | 84 | 8 | 6 | 226 | 165 | 398 | 6.35e-75 | 232 |
| Msa1445870 | AT2G33350.2 | 56.540 | 237 | 84 | 8 | 6 | 226 | 176 | 409 | 8.22e-75 | 232 |
| Msa1445870 | AT2G33350.5 | 56.540 | 237 | 84 | 8 | 6 | 226 | 185 | 418 | 1.65e-74 | 231 |
| Msa1445870 | AT2G33350.1 | 56.303 | 238 | 84 | 9 | 6 | 226 | 176 | 410 | 4.70e-73 | 228 |
| Msa1445870 | AT2G33350.3 | 49.686 | 159 | 64 | 7 | 6 | 151 | 176 | 331 | 7.80e-37 | 132 |
| Msa1445870 | AT1G04500.2 | 46.988 | 166 | 66 | 7 | 5 | 151 | 147 | 309 | 8.27e-36 | 130 |
| Msa1445870 | AT1G63820.1 | 43.448 | 145 | 69 | 4 | 55 | 192 | 118 | 256 | 3.23e-27 | 105 |
| Msa1445870 | AT5G41380.1 | 67.742 | 62 | 20 | 0 | 116 | 177 | 201 | 262 | 5.82e-24 | 97.4 |
| Msa1445870 | AT3G12890.1 | 52.747 | 91 | 39 | 1 | 117 | 207 | 126 | 212 | 6.20e-24 | 96.3 |
| Msa1445870 | AT4G27900.1 | 38.835 | 103 | 37 | 2 | 78 | 175 | 178 | 259 | 1.24e-15 | 73.9 |
| Msa1445870 | AT4G27900.2 | 38.835 | 103 | 37 | 2 | 78 | 175 | 178 | 259 | 1.24e-15 | 73.9 |
| Msa1445870 | AT5G53420.2 | 65.957 | 47 | 16 | 0 | 128 | 174 | 137 | 183 | 1.29e-15 | 72.8 |
| Msa1445870 | AT5G53420.5 | 65.957 | 47 | 16 | 0 | 128 | 174 | 137 | 183 | 1.29e-15 | 72.8 |
| Msa1445870 | AT5G53420.4 | 65.957 | 47 | 16 | 0 | 128 | 174 | 137 | 183 | 1.29e-15 | 72.8 |
| Msa1445870 | AT5G59990.1 | 41.322 | 121 | 52 | 2 | 105 | 223 | 138 | 241 | 1.74e-15 | 73.2 |
| Msa1445870 | AT5G53420.1 | 65.957 | 47 | 16 | 0 | 128 | 174 | 216 | 262 | 2.69e-15 | 73.2 |
| Msa1445870 | AT2G24790.1 | 40.000 | 75 | 41 | 1 | 108 | 178 | 203 | 277 | 4.68e-11 | 61.6 |
| Msa1445870 | AT5G24930.1 | 38.571 | 70 | 43 | 0 | 110 | 179 | 275 | 344 | 7.03e-11 | 61.2 |
Find 45 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCAAAGAATGATGATTT+TGG | 0.213280 | tig0031211:-43702 | Msa1445870:CDS |
| GCTGATAGTTCTAGCTTATT+TGG | 0.217917 | tig0031211:-44834 | Msa1445870:CDS |
| TTACTTCATCTTCATCTTCA+TGG | 0.258336 | tig0031211:+43652 | Msa1445870:intergenic |
| TTGGATTATCAAGGTGAAAA+TGG | 0.259352 | tig0031211:-44771 | Msa1445870:CDS |
| TCCTCCAAGTGTGAAATTTC+TGG | 0.285986 | tig0031211:+43974 | Msa1445870:intergenic |
| TTTGGTGGAGGGATTCTATT+AGG | 0.306595 | tig0031211:-44816 | Msa1445870:CDS |
| TGAAATGCAGACACAAGATT+TGG | 0.326244 | tig0031211:-44790 | Msa1445870:CDS |
| GATAGCCGACCGCGAGTTAG+AGG | 0.377396 | tig0031211:-43729 | Msa1445870:CDS |
| TTGTACAGATTCTGTTCAAC+AGG | 0.388571 | tig0031211:-44739 | Msa1445870:CDS |
| GAGGACTCTTCTTTGAAAGT+TGG | 0.400610 | tig0031211:-43956 | Msa1445870:CDS |
| GAGAATCACAAACTAGTATC+TGG | 0.409472 | tig0031211:-44025 | Msa1445870:CDS |
| TCTTGTTCTTATCTTAGTAA+TGG | 0.420390 | tig0031211:-44897 | Msa1445870:CDS |
| TGTTAAAGAAGAAGATGATA+TGG | 0.428400 | tig0031211:-43408 | Msa1445870:CDS |
| TCTTCATGGTTGCTACTACC+TGG | 0.441983 | tig0031211:+43666 | Msa1445870:intergenic |
| TCTTATCTTAGTAATGGCTT+AGG | 0.445374 | tig0031211:-44891 | Msa1445870:CDS |
| GATAGTTCTAGCTTATTTGG+TGG | 0.459834 | tig0031211:-44831 | Msa1445870:CDS |
| TGGAAGTTGTTCTGCCACTT+TGG | 0.463869 | tig0031211:-43999 | Msa1445870:CDS |
| ATCATACCTGAAATTCTTGA+GGG | 0.472005 | tig0031211:+44709 | Msa1445870:intergenic |
| GGTGTGTATCATGGAAATCT+TGG | 0.472409 | tig0031211:-44870 | Msa1445870:CDS |
| GGCACCAGAAATTTCACACT+TGG | 0.479570 | tig0031211:-43978 | Msa1445870:CDS |
| AGTTCTAGCTTATTTGGTGG+AGG | 0.485926 | tig0031211:-44828 | Msa1445870:CDS |
| ACCAGAAATTTCACACTTGG+AGG | 0.486593 | tig0031211:-43975 | Msa1445870:CDS |
| ACACAAGATTTGGATTATCA+AGG | 0.487381 | tig0031211:-44780 | Msa1445870:CDS |
| GATGGAATAGTTGCATTTGA+AGG | 0.501927 | tig0031211:+43343 | Msa1445870:intergenic |
| GAACAAGAAGGAGAATAAGA+AGG | 0.504833 | tig0031211:+44912 | Msa1445870:intergenic |
| CACAAACTAGTATCTGGTGC+TGG | 0.507442 | tig0031211:-44019 | Msa1445870:CDS |
| GAAAACTTTCTGTTGAGCAA+AGG | 0.518365 | tig0031211:-43934 | Msa1445870:CDS |
| TCTAACTCGCGGTCGGCTAT+CGG | 0.529354 | tig0031211:+43731 | Msa1445870:intergenic |
| GATCATACCTGAAATTCTTG+AGG | 0.529369 | tig0031211:+44708 | Msa1445870:intergenic |
| GATTATCAAGGTGAAAATGG+TGG | 0.531561 | tig0031211:-44768 | Msa1445870:CDS |
| GTTCTAGCTTATTTGGTGGA+GGG | 0.546863 | tig0031211:-44827 | Msa1445870:CDS |
| AATGGCTTAGGTGTGTATCA+TGG | 0.554708 | tig0031211:-44879 | Msa1445870:CDS |
| TTTGGAGAGAATCATAGGCC+AGG | 0.559627 | tig0031211:-43684 | Msa1445870:CDS |
| AATTCAAATCAATGAGTGGA+TGG | 0.563218 | tig0031211:+43325 | Msa1445870:intergenic |
| CAATCATCTTCAAATACAGA+AGG | 0.568846 | tig0031211:+44948 | Msa1445870:intergenic |
| AAATTTCAGCAAGAAAATCA+AGG | 0.584947 | tig0031211:-43870 | Msa1445870:intron |
| GATATCTTTGCACATATCAG+TGG | 0.587582 | tig0031211:-43374 | Msa1445870:CDS |
| GCCGACCGCGAGTTAGAGGA+AGG | 0.600682 | tig0031211:-43725 | Msa1445870:CDS |
| CATTAATTCAAATCAATGAG+TGG | 0.603791 | tig0031211:+43321 | Msa1445860:intergenic |
| TTACTAAGATAAGAACAAGA+AGG | 0.626377 | tig0031211:+44900 | Msa1445860:intergenic |
| TGAAATTTCTGGTGCCAAAG+TGG | 0.631400 | tig0031211:+43985 | Msa1445860:intergenic |
| GCAAACCTTCCTCTAACTCG+CGG | 0.633175 | tig0031211:+43720 | Msa1445860:intergenic |
| AATCATCTTCAAATACAGAA+GGG | 0.635264 | tig0031211:+44949 | Msa1445860:intergenic |
| ACCTTCCTCTAACTCGCGGT+CGG | 0.662592 | tig0031211:+43724 | Msa1445860:intergenic |
| GATATGTGCAAAGATATCTG+AGG | 0.713563 | tig0031211:+43379 | Msa1445860:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAAAATACTTTTGATT+TGG | - | tig0031211:43868-43887 | Msa1445870:intron | 10.0% |
| !!! | ATAATTGTATTTTCTTTTAT+AGG | - | tig0031211:44229-44248 | Msa1445870:intron | 10.0% |
| !!! | ATTAAAAAATACTTTTGATT+TGG | - | tig0031211:43868-43887 | Msa1445870:intron | 10.0% |
| !!! | ATAATTGTATTTTCTTTTAT+AGG | - | tig0031211:44229-44248 | Msa1445870:intron | 10.0% |
| !! | TCTTATTATAGAAGATATTA+TGG | - | tig0031211:43646-43665 | Msa1445870:intron | 15.0% |
| !!! | TTTTTATTATCAACTTAAAG+TGG | + | tig0031211:43912-43931 | Msa1445870:intergenic | 15.0% |
| !!! | ATCGTTTTGTTAAATAAATT+TGG | + | tig0031211:44672-44691 | Msa1445870:intergenic | 15.0% |
| !! | TCTTATTATAGAAGATATTA+TGG | - | tig0031211:43646-43665 | Msa1445870:intron | 15.0% |
| !!! | TTTTTATTATCAACTTAAAG+TGG | + | tig0031211:43912-43931 | Msa1445870:intergenic | 15.0% |
| !!! | ATCGTTTTGTTAAATAAATT+TGG | + | tig0031211:44672-44691 | Msa1445870:intergenic | 15.0% |
| !! | AAATCAAGGAAAATTTAACA+AGG | + | tig0031211:43627-43646 | Msa1445870:intergenic | 20.0% |
| !! | TCTTCTATAATAAGAAATCA+AGG | + | tig0031211:43641-43660 | Msa1445870:intergenic | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+AGG | + | tig0031211:43698-43717 | Msa1445870:intergenic | 20.0% |
| !! | AATTGTTAAAAGATTAGAAG+AGG | - | tig0031211:43746-43765 | Msa1445870:CDS | 20.0% |
| !! | TTGTTAAATAAATTTGGCTA+GGG | + | tig0031211:44666-44685 | Msa1445870:intergenic | 20.0% |
| !! | TTTGTTAAATAAATTTGGCT+AGG | + | tig0031211:44667-44686 | Msa1445870:intergenic | 20.0% |
| !!! | TTTCCTTTTCAATTATTTGA+TGG | - | tig0031211:44809-44828 | Msa1445870:CDS | 20.0% |
| !! | ATACCATCAAATAATTGAAA+AGG | + | tig0031211:44815-44834 | Msa1445870:intergenic | 20.0% |
| !! | AAATCAAGGAAAATTTAACA+AGG | + | tig0031211:43627-43646 | Msa1445870:intergenic | 20.0% |
| !! | TCTTCTATAATAAGAAATCA+AGG | + | tig0031211:43641-43660 | Msa1445870:intergenic | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+AGG | + | tig0031211:43698-43717 | Msa1445870:intergenic | 20.0% |
| !! | AATTGTTAAAAGATTAGAAG+AGG | - | tig0031211:43746-43765 | Msa1445870:CDS | 20.0% |
| !! | TTGTTAAATAAATTTGGCTA+GGG | + | tig0031211:44666-44685 | Msa1445870:intergenic | 20.0% |
| !! | TTTGTTAAATAAATTTGGCT+AGG | + | tig0031211:44667-44686 | Msa1445870:intergenic | 20.0% |
| !!! | TTTCCTTTTCAATTATTTGA+TGG | - | tig0031211:44809-44828 | Msa1445870:CDS | 20.0% |
| !! | ATACCATCAAATAATTGAAA+AGG | + | tig0031211:44815-44834 | Msa1445870:intergenic | 20.0% |
| ! | AATCATCTTCAAATACAGAA+GGG | + | tig0031211:43342-43361 | None:intergenic | 25.0% |
| ! | TTACTAAGATAAGAACAAGA+AGG | + | tig0031211:43391-43410 | None:intergenic | 25.0% |
| ! | TCTTGTTCTTATCTTAGTAA+TGG | - | tig0031211:43391-43410 | Msa1445870:CDS | 25.0% |
| !! | ATTTTTACTTTGTATGTAGG+TGG | + | tig0031211:43695-43714 | Msa1445870:intergenic | 25.0% |
| !! | TATTTTCTTTTATAGGCACT+TGG | - | tig0031211:44236-44255 | Msa1445870:intron | 25.0% |
| ! | AAATTTCAGCAAGAAAATCA+AGG | - | tig0031211:44418-44437 | Msa1445870:intron | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | - | tig0031211:44586-44605 | Msa1445870:intron | 25.0% |
| ! | AAAAAATACTGAAAGTGATG+TGG | + | tig0031211:44788-44807 | Msa1445870:intergenic | 25.0% |
| ! | TGTTAAAGAAGAAGATGATA+TGG | - | tig0031211:44880-44899 | Msa1445870:CDS | 25.0% |
| ! | AATCATCTTCAAATACAGAA+GGG | + | tig0031211:43342-43361 | Msa1445870:intergenic | 25.0% |
| ! | TTACTAAGATAAGAACAAGA+AGG | + | tig0031211:43391-43410 | Msa1445870:intergenic | 25.0% |
| ! | TCTTGTTCTTATCTTAGTAA+TGG | - | tig0031211:43391-43410 | Msa1445870:CDS | 25.0% |
| !! | ATTTTTACTTTGTATGTAGG+TGG | + | tig0031211:43695-43714 | Msa1445870:intergenic | 25.0% |
| !! | TATTTTCTTTTATAGGCACT+TGG | - | tig0031211:44236-44255 | Msa1445870:intron | 25.0% |
| ! | AAATTTCAGCAAGAAAATCA+AGG | - | tig0031211:44418-44437 | Msa1445870:intron | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | - | tig0031211:44586-44605 | Msa1445870:intron | 25.0% |
| ! | AAAAAATACTGAAAGTGATG+TGG | + | tig0031211:44788-44807 | Msa1445870:intergenic | 25.0% |
| ! | TGTTAAAGAAGAAGATGATA+TGG | - | tig0031211:44880-44899 | Msa1445870:CDS | 25.0% |
| CAATCATCTTCAAATACAGA+AGG | + | tig0031211:43343-43362 | None:intergenic | 30.0% | |
| TCTTATCTTAGTAATGGCTT+AGG | - | tig0031211:43397-43416 | Msa1445870:CDS | 30.0% | |
| ACACAAGATTTGGATTATCA+AGG | - | tig0031211:43508-43527 | Msa1445870:intron | 30.0% | |
| TTGGATTATCAAGGTGAAAA+TGG | - | tig0031211:43517-43536 | Msa1445870:intron | 30.0% | |
| ! | TTTTAACCCTCAAGAATTTC+AGG | - | tig0031211:43573-43592 | Msa1445870:intron | 30.0% |
| ATCATACCTGAAATTCTTGA+GGG | + | tig0031211:43582-43601 | Msa1445870:intergenic | 30.0% | |
| !! | CTATATCAGAAGTGTACTTT+TGG | - | tig0031211:43769-43788 | Msa1445870:intron | 30.0% |
| GAAAAGACCATCTTTATGAT+TGG | - | tig0031211:43963-43982 | Msa1445870:CDS | 30.0% | |
| CATTGAACCAATCATAAAGA+TGG | + | tig0031211:43973-43992 | Msa1445870:intergenic | 30.0% | |
| ATGTCTAACATCAACATATG+TGG | + | tig0031211:44140-44159 | Msa1445870:intergenic | 30.0% | |
| TGTTAGACATTGATACATGT+TGG | - | tig0031211:44150-44169 | Msa1445870:intron | 30.0% | |
| !! | ATGATTTTGGAGAGAATCAT+AGG | - | tig0031211:44599-44618 | Msa1445870:intron | 30.0% |
| TTACTTCATCTTCATCTTCA+TGG | + | tig0031211:44639-44658 | Msa1445870:intergenic | 30.0% | |
| ! | TCATTTTACAATTGTTCTCG+AGG | - | tig0031211:44700-44719 | Msa1445870:intron | 30.0% |
| ATCTGCAAGTACAAAATGAA+AGG | + | tig0031211:44857-44876 | Msa1445870:intergenic | 30.0% | |
| CAATCATCTTCAAATACAGA+AGG | + | tig0031211:43343-43362 | Msa1445870:intergenic | 30.0% | |
| TCTTATCTTAGTAATGGCTT+AGG | - | tig0031211:43397-43416 | Msa1445870:CDS | 30.0% | |
| ACACAAGATTTGGATTATCA+AGG | - | tig0031211:43508-43527 | Msa1445870:intron | 30.0% | |
| TTGGATTATCAAGGTGAAAA+TGG | - | tig0031211:43517-43536 | Msa1445870:intron | 30.0% | |
| ! | TTTTAACCCTCAAGAATTTC+AGG | - | tig0031211:43573-43592 | Msa1445870:intron | 30.0% |
| ATCATACCTGAAATTCTTGA+GGG | + | tig0031211:43582-43601 | Msa1445870:intergenic | 30.0% | |
| !! | CTATATCAGAAGTGTACTTT+TGG | - | tig0031211:43769-43788 | Msa1445870:intron | 30.0% |
| GAAAAGACCATCTTTATGAT+TGG | - | tig0031211:43963-43982 | Msa1445870:CDS | 30.0% | |
| CATTGAACCAATCATAAAGA+TGG | + | tig0031211:43973-43992 | Msa1445870:intergenic | 30.0% | |
| ATGTCTAACATCAACATATG+TGG | + | tig0031211:44140-44159 | Msa1445870:intergenic | 30.0% | |
| TGTTAGACATTGATACATGT+TGG | - | tig0031211:44150-44169 | Msa1445870:intron | 30.0% | |
| !! | ATGATTTTGGAGAGAATCAT+AGG | - | tig0031211:44599-44618 | Msa1445870:intron | 30.0% |
| TTACTTCATCTTCATCTTCA+TGG | + | tig0031211:44639-44658 | Msa1445870:intergenic | 30.0% | |
| ! | TCATTTTACAATTGTTCTCG+AGG | - | tig0031211:44700-44719 | Msa1445870:intron | 30.0% |
| ATCTGCAAGTACAAAATGAA+AGG | + | tig0031211:44857-44876 | Msa1445870:intergenic | 30.0% | |
| GAACAAGAAGGAGAATAAGA+AGG | + | tig0031211:43379-43398 | None:intergenic | 35.0% | |
| !! | GCTGATAGTTCTAGCTTATT+TGG | - | tig0031211:43454-43473 | Msa1445870:intron | 35.0% |
| !! | GATAGTTCTAGCTTATTTGG+TGG | - | tig0031211:43457-43476 | Msa1445870:intron | 35.0% |
| TGAAATGCAGACACAAGATT+TGG | - | tig0031211:43498-43517 | Msa1445870:intron | 35.0% | |
| GATTATCAAGGTGAAAATGG+TGG | - | tig0031211:43520-43539 | Msa1445870:intron | 35.0% | |
| TTGTACAGATTCTGTTCAAC+AGG | - | tig0031211:43549-43568 | Msa1445870:intron | 35.0% | |
| GATCATACCTGAAATTCTTG+AGG | + | tig0031211:43583-43602 | Msa1445870:intergenic | 35.0% | |
| !! | GTACTTTTGGTTAAAGCTCA+TGG | - | tig0031211:43782-43801 | Msa1445870:intron | 35.0% |
| !! | TTTGATTTGGCCTAGTAGAA+AGG | - | tig0031211:43881-43900 | Msa1445870:CDS | 35.0% |
| AGTGGTTATTCCTTTCTACT+AGG | + | tig0031211:43894-43913 | Msa1445870:intergenic | 35.0% | |
| !! | ACGTCATCGATTTGAAGTAT+CGG | - | tig0031211:44182-44201 | Msa1445870:intron | 35.0% |
| GAGAATCACAAACTAGTATC+TGG | - | tig0031211:44263-44282 | Msa1445870:intron | 35.0% | |
| GAAAACTTTCTGTTGAGCAA+AGG | - | tig0031211:44354-44373 | Msa1445870:intron | 35.0% | |
| GTTGAACATTTCAGAGTCTA+GGG | + | tig0031211:44741-44760 | Msa1445870:intergenic | 35.0% | |
| AGTTGAACATTTCAGAGTCT+AGG | + | tig0031211:44742-44761 | Msa1445870:intergenic | 35.0% | |
| GATATGTGCAAAGATATCTG+AGG | + | tig0031211:44912-44931 | Msa1445870:intergenic | 35.0% | |
| GATATCTTTGCACATATCAG+TGG | - | tig0031211:44914-44933 | Msa1445870:CDS | 35.0% | |
| GATGGAATAGTTGCATTTGA+AGG | + | tig0031211:44948-44967 | Msa1445870:intergenic | 35.0% | |
| GAACAAGAAGGAGAATAAGA+AGG | + | tig0031211:43379-43398 | Msa1445870:intergenic | 35.0% | |
| !! | GCTGATAGTTCTAGCTTATT+TGG | - | tig0031211:43454-43473 | Msa1445870:intron | 35.0% |
| !! | GATAGTTCTAGCTTATTTGG+TGG | - | tig0031211:43457-43476 | Msa1445870:intron | 35.0% |
| TGAAATGCAGACACAAGATT+TGG | - | tig0031211:43498-43517 | Msa1445870:intron | 35.0% | |
| GATTATCAAGGTGAAAATGG+TGG | - | tig0031211:43520-43539 | Msa1445870:intron | 35.0% | |
| TTGTACAGATTCTGTTCAAC+AGG | - | tig0031211:43549-43568 | Msa1445870:intron | 35.0% | |
| GATCATACCTGAAATTCTTG+AGG | + | tig0031211:43583-43602 | Msa1445870:intergenic | 35.0% | |
| !! | GTACTTTTGGTTAAAGCTCA+TGG | - | tig0031211:43782-43801 | Msa1445870:intron | 35.0% |
| !! | TTTGATTTGGCCTAGTAGAA+AGG | - | tig0031211:43881-43900 | Msa1445870:CDS | 35.0% |
| AGTGGTTATTCCTTTCTACT+AGG | + | tig0031211:43894-43913 | Msa1445870:intergenic | 35.0% | |
| !! | ACGTCATCGATTTGAAGTAT+CGG | - | tig0031211:44182-44201 | Msa1445870:intron | 35.0% |
| GAGAATCACAAACTAGTATC+TGG | - | tig0031211:44263-44282 | Msa1445870:intron | 35.0% | |
| GAAAACTTTCTGTTGAGCAA+AGG | - | tig0031211:44354-44373 | Msa1445870:intron | 35.0% | |
| GTTGAACATTTCAGAGTCTA+GGG | + | tig0031211:44741-44760 | Msa1445870:intergenic | 35.0% | |
| AGTTGAACATTTCAGAGTCT+AGG | + | tig0031211:44742-44761 | Msa1445870:intergenic | 35.0% | |
| GATATGTGCAAAGATATCTG+AGG | + | tig0031211:44912-44931 | Msa1445870:intergenic | 35.0% | |
| GATATCTTTGCACATATCAG+TGG | - | tig0031211:44914-44933 | Msa1445870:CDS | 35.0% | |
| GATGGAATAGTTGCATTTGA+AGG | + | tig0031211:44948-44967 | Msa1445870:intergenic | 35.0% | |
| AATGGCTTAGGTGTGTATCA+TGG | - | tig0031211:43409-43428 | Msa1445870:CDS | 40.0% | |
| GGTGTGTATCATGGAAATCT+TGG | - | tig0031211:43418-43437 | Msa1445870:intron | 40.0% | |
| !! | AGTTCTAGCTTATTTGGTGG+AGG | - | tig0031211:43460-43479 | Msa1445870:intron | 40.0% |
| !! | GTTCTAGCTTATTTGGTGGA+GGG | - | tig0031211:43461-43480 | Msa1445870:intron | 40.0% |
| TTTGGTGGAGGGATTCTATT+AGG | - | tig0031211:43472-43491 | Msa1445870:intron | 40.0% | |
| !! | TGAAATTTCTGGTGCCAAAG+TGG | + | tig0031211:44306-44325 | Msa1445870:intergenic | 40.0% |
| ACCAGAAATTTCACACTTGG+AGG | - | tig0031211:44313-44332 | Msa1445870:intron | 40.0% | |
| TCCTCCAAGTGTGAAATTTC+TGG | + | tig0031211:44317-44336 | Msa1445870:intergenic | 40.0% | |
| ! | GAGGACTCTTCTTTGAAAGT+TGG | - | tig0031211:44332-44351 | Msa1445870:intron | 40.0% |
| AATGGCTTAGGTGTGTATCA+TGG | - | tig0031211:43409-43428 | Msa1445870:CDS | 40.0% | |
| GGTGTGTATCATGGAAATCT+TGG | - | tig0031211:43418-43437 | Msa1445870:intron | 40.0% | |
| !! | AGTTCTAGCTTATTTGGTGG+AGG | - | tig0031211:43460-43479 | Msa1445870:intron | 40.0% |
| !! | GTTCTAGCTTATTTGGTGGA+GGG | - | tig0031211:43461-43480 | Msa1445870:intron | 40.0% |
| TTTGGTGGAGGGATTCTATT+AGG | - | tig0031211:43472-43491 | Msa1445870:intron | 40.0% | |
| !! | TGAAATTTCTGGTGCCAAAG+TGG | + | tig0031211:44306-44325 | Msa1445870:intergenic | 40.0% |
| ACCAGAAATTTCACACTTGG+AGG | - | tig0031211:44313-44332 | Msa1445870:intron | 40.0% | |
| TCCTCCAAGTGTGAAATTTC+TGG | + | tig0031211:44317-44336 | Msa1445870:intergenic | 40.0% | |
| ! | GAGGACTCTTCTTTGAAAGT+TGG | - | tig0031211:44332-44351 | Msa1445870:intron | 40.0% |
| CACAAACTAGTATCTGGTGC+TGG | - | tig0031211:44269-44288 | Msa1445870:intron | 45.0% | |
| ! | TGGAAGTTGTTCTGCCACTT+TGG | - | tig0031211:44289-44308 | Msa1445870:intron | 45.0% |
| GGCACCAGAAATTTCACACT+TGG | - | tig0031211:44310-44329 | Msa1445870:intron | 45.0% | |
| TTTGGAGAGAATCATAGGCC+AGG | - | tig0031211:44604-44623 | Msa1445870:intron | 45.0% | |
| TCTTCATGGTTGCTACTACC+TGG | + | tig0031211:44625-44644 | Msa1445870:intergenic | 45.0% | |
| CACAAACTAGTATCTGGTGC+TGG | - | tig0031211:44269-44288 | Msa1445870:intron | 45.0% | |
| ! | TGGAAGTTGTTCTGCCACTT+TGG | - | tig0031211:44289-44308 | Msa1445870:intron | 45.0% |
| GGCACCAGAAATTTCACACT+TGG | - | tig0031211:44310-44329 | Msa1445870:intron | 45.0% | |
| TTTGGAGAGAATCATAGGCC+AGG | - | tig0031211:44604-44623 | Msa1445870:intron | 45.0% | |
| TCTTCATGGTTGCTACTACC+TGG | + | tig0031211:44625-44644 | Msa1445870:intergenic | 45.0% | |
| GCAAACCTTCCTCTAACTCG+CGG | + | tig0031211:44571-44590 | Msa1445870:intergenic | 50.0% | |
| GCAAACCTTCCTCTAACTCG+CGG | + | tig0031211:44571-44590 | Msa1445870:intergenic | 50.0% | |
| TCTAACTCGCGGTCGGCTAT+CGG | + | tig0031211:44560-44579 | Msa1445870:intergenic | 55.0% | |
| ACCTTCCTCTAACTCGCGGT+CGG | + | tig0031211:44567-44586 | Msa1445870:intergenic | 55.0% | |
| TCTAACTCGCGGTCGGCTAT+CGG | + | tig0031211:44560-44579 | Msa1445870:intergenic | 55.0% | |
| ACCTTCCTCTAACTCGCGGT+CGG | + | tig0031211:44567-44586 | Msa1445870:intergenic | 55.0% | |
| GATAGCCGACCGCGAGTTAG+AGG | - | tig0031211:44559-44578 | Msa1445870:intron | 60.0% | |
| GATAGCCGACCGCGAGTTAG+AGG | - | tig0031211:44559-44578 | Msa1445870:intron | 60.0% | |
| GCCGACCGCGAGTTAGAGGA+AGG | - | tig0031211:44563-44582 | Msa1445870:intron | 65.0% | |
| GCCGACCGCGAGTTAGAGGA+AGG | - | tig0031211:44563-44582 | Msa1445870:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031211 | gene | 43331 | 44979 | 43331 | ID=Msa1445870;Name=Msa1445870 |
| tig0031211 | mRNA | 43331 | 44979 | 43331 | ID=Msa1445870-mRNA-1;Parent=Msa1445870;Name=Msa1445870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.33|0|1|1|0.75|4|0|226 |
| tig0031211 | exon | 44716 | 44979 | 44716 | ID=Msa1445870-mRNA-1:exon:15172;Parent=Msa1445870-mRNA-1 |
| tig0031211 | exon | 43871 | 44059 | 43871 | ID=Msa1445870-mRNA-1:exon:15171;Parent=Msa1445870-mRNA-1 |
| tig0031211 | exon | 43656 | 43775 | 43656 | ID=Msa1445870-mRNA-1:exon:15170;Parent=Msa1445870-mRNA-1 |
| tig0031211 | exon | 43331 | 43435 | 43331 | ID=Msa1445870-mRNA-1:exon:15169;Parent=Msa1445870-mRNA-1 |
| tig0031211 | CDS | 44716 | 44979 | 44716 | ID=Msa1445870-mRNA-1:cds;Parent=Msa1445870-mRNA-1 |
| tig0031211 | CDS | 43871 | 44059 | 43871 | ID=Msa1445870-mRNA-1:cds;Parent=Msa1445870-mRNA-1 |
| tig0031211 | CDS | 43656 | 43775 | 43656 | ID=Msa1445870-mRNA-1:cds;Parent=Msa1445870-mRNA-1 |
| tig0031211 | CDS | 43331 | 43435 | 43331 | ID=Msa1445870-mRNA-1:cds;Parent=Msa1445870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
