Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110820 | sp|Q94AR8|LEUC_ARATH | 75.701 | 107 | 14 | 1 | 1 | 95 | 284 | 390 | 3.04e-48 | 164 |
| Msa0110820 | sp|Q94AR8|LEUC_ARATH | 71.875 | 64 | 16 | 1 | 79 | 140 | 446 | 509 | 1.05e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110820 | A0A803Q4G1 | 80.892 | 157 | 13 | 2 | 1 | 140 | 285 | 441 | 2.49e-82 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110820 | Msa1466460 | 0.800642 | 1.309652e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110820 | MtrunA17_Chr1g0168711 | 80.702 | 114 | 10 | 1 | 1 | 102 | 280 | 393 | 4.73e-56 | 182 |
| Msa0110820 | MtrunA17_Chr1g0168711 | 79.688 | 64 | 11 | 1 | 79 | 140 | 442 | 505 | 6.38e-28 | 107 |
| Msa0110820 | MtrunA17_Chr1g0186091 | 64.078 | 103 | 22 | 2 | 1 | 98 | 283 | 375 | 2.61e-35 | 127 |
| Msa0110820 | MtrunA17_Chr1g0186091 | 71.429 | 63 | 16 | 1 | 80 | 140 | 429 | 491 | 9.38e-25 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110820 | AT4G13430.1 | 75.701 | 107 | 14 | 1 | 1 | 95 | 284 | 390 | 3.09e-49 | 164 |
| Msa0110820 | AT4G13430.1 | 71.875 | 64 | 16 | 1 | 79 | 140 | 446 | 509 | 1.07e-24 | 98.6 |
Find 36 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGAAGGTGAAATATATT+TGG | 0.262996 | 1_3:+23972876 | Msa0110820:CDS |
| AACCACAAATAGAAACTTTC+CGG | 0.302026 | 1_3:+23972840 | Msa0110820:CDS |
| TCCCGGAAAGTTTCTATTTG+TGG | 0.375892 | 1_3:-23972842 | None:intergenic |
| GCAGATGCTGCAGCTGTATA+TGG | 0.406662 | 1_3:-23972904 | None:intergenic |
| ACCACAAATAGAAACTTTCC+GGG | 0.418276 | 1_3:+23972841 | Msa0110820:CDS |
| TGCAACATGGTTGTTGAAGC+TGG | 0.422479 | 1_3:+23971105 | Msa0110820:CDS |
| CTTGCCAAAGCACGGTTATC+CGG | 0.423722 | 1_3:-23971765 | None:intergenic |
| TGTTACTGCAAGAACTCTCT+TGG | 0.455470 | 1_3:-23972949 | None:intergenic |
| TAGATTTGATGTCTCAAAGT+TGG | 0.456690 | 1_3:+23971618 | Msa0110820:CDS |
| ATTGTTGCAGCCTCATTCTC+CGG | 0.462009 | 1_3:+23971746 | Msa0110820:intron |
| AGAAACTTTCCGGGACGAAT+GGG | 0.473315 | 1_3:+23972850 | Msa0110820:CDS |
| TTCTCCGGATAACCGTGCTT+TGG | 0.483710 | 1_3:+23971761 | Msa0110820:CDS |
| GTTGGAGCCGTTGGTGGCCA+AGG | 0.488700 | 1_3:+23971636 | Msa0110820:CDS |
| TAGAAACTTTCCGGGACGAA+TGG | 0.507639 | 1_3:+23972849 | Msa0110820:CDS |
| CTCAAAGTTGGAGCCGTTGG+TGG | 0.507823 | 1_3:+23971630 | Msa0110820:CDS |
| TCTTGGATCAGTAACATAAC+CGG | 0.516702 | 1_3:-23972932 | None:intergenic |
| TATTTGTATGTAATGCTATC+CGG | 0.516928 | 1_3:-23971150 | None:intergenic |
| TGCACTCTCTTGCCAAAGCA+CGG | 0.532465 | 1_3:-23971773 | None:intergenic |
| AAAGAATGGTGTTATTCCTC+CGG | 0.532814 | 1_3:+23971131 | Msa0110820:CDS |
| TTCCGGGACGAATGGGACAC+AGG | 0.552072 | 1_3:+23972857 | Msa0110820:CDS |
| AGTATACATAGGATCTTGTA+CGG | 0.554141 | 1_3:+23971815 | Msa0110820:CDS |
| GTTGAAGCTGGAGGAAAGAA+TGG | 0.560027 | 1_3:+23971117 | Msa0110820:CDS |
| GCACGGTTATCCGGAGAATG+AGG | 0.564925 | 1_3:-23971756 | None:intergenic |
| TGCTTTGGCAAGAGAGTGCA+AGG | 0.565366 | 1_3:+23971776 | Msa0110820:CDS |
| GGACGAATGGGACACAGGGA+AGG | 0.565427 | 1_3:+23972862 | Msa0110820:CDS |
| TCCCTGTGTCCCATTCGTCC+CGG | 0.570062 | 1_3:-23972859 | None:intergenic |
| TGTCTCAAAGTTGGAGCCGT+TGG | 0.585427 | 1_3:+23971627 | Msa0110820:CDS |
| GCTGCAGCATCTGCATTGAC+CGG | 0.594770 | 1_3:+23972913 | Msa0110820:CDS |
| AAAATTAACAGAGTATACAT+AGG | 0.597511 | 1_3:+23971804 | Msa0110820:CDS |
| TACATAGGATCTTGTACGGG+TGG | 0.615320 | 1_3:+23971819 | Msa0110820:CDS |
| TCCGGGACGAATGGGACACA+GGG | 0.629316 | 1_3:+23972858 | Msa0110820:CDS |
| GTATACATAGGATCTTGTAC+GGG | 0.648403 | 1_3:+23971816 | Msa0110820:CDS |
| GGACTAACCTTGGCCACCAA+CGG | 0.651396 | 1_3:-23971643 | None:intergenic |
| ACGGATGACATTGTGCAACA+TGG | 0.689455 | 1_3:+23971092 | Msa0110820:CDS |
| TTGTATGTAATGCTATCCGG+AGG | 0.703147 | 1_3:-23971147 | None:intergenic |
| AACATGGTTGTTGAAGCTGG+AGG | 0.764525 | 1_3:+23971108 | Msa0110820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAAGATTTAAAAGAT+CGG | - | chr1_3:23972517-23972536 | None:intergenic | 10.0% |
| !! | TTTGTAAAGTAATAAAATTA+GGG | - | chr1_3:23972735-23972754 | None:intergenic | 10.0% |
| !! | ATTTGTAAAGTAATAAAATT+AGG | - | chr1_3:23972736-23972755 | None:intergenic | 10.0% |
| !! | TATATAAAGATTTAAAAGAT+CGG | - | chr1_3:23972517-23972536 | None:intergenic | 10.0% |
| !! | TTTGTAAAGTAATAAAATTA+GGG | - | chr1_3:23972735-23972754 | None:intergenic | 10.0% |
| !! | ATTTGTAAAGTAATAAAATT+AGG | - | chr1_3:23972736-23972755 | None:intergenic | 10.0% |
| !! | TAATATTATAGATATGCAAT+AGG | - | chr1_3:23971907-23971926 | None:intergenic | 15.0% |
| !!! | ACATTTTAATAAAATTCTCA+TGG | + | chr1_3:23972318-23972337 | Msa0110820:intron | 15.0% |
| !! | TAATATTATAGATATGCAAT+AGG | - | chr1_3:23971907-23971926 | None:intergenic | 15.0% |
| !!! | ACATTTTAATAAAATTCTCA+TGG | + | chr1_3:23972318-23972337 | Msa0110820:intron | 15.0% |
| !! | ATAACCATGATAATTTACAA+GGG | - | chr1_3:23971469-23971488 | None:intergenic | 20.0% |
| !! | TTAAGTATTTACATTAGTTG+AGG | - | chr1_3:23971727-23971746 | None:intergenic | 20.0% |
| !! | AAAATTAACAGAGTATACAT+AGG | + | chr1_3:23971804-23971823 | Msa0110820:CDS | 20.0% |
| !!! | TGTTTGAAATAAAATCTTGA+AGG | + | chr1_3:23971927-23971946 | Msa0110820:intron | 20.0% |
| !! | AAGAACGTTGTAAATTATAT+AGG | - | chr1_3:23972121-23972140 | None:intergenic | 20.0% |
| !! | AAAATTCTCATGGTAAATAA+TGG | + | chr1_3:23972328-23972347 | Msa0110820:intron | 20.0% |
| !! | ATTAGAATCTTTATCATTTG+TGG | + | chr1_3:23972440-23972459 | Msa0110820:intron | 20.0% |
| !!! | AAATTTGAAACTTTTTTGGT+TGG | - | chr1_3:23972680-23972699 | None:intergenic | 20.0% |
| !!! | GAAGAAATTTGAAACTTTTT+TGG | - | chr1_3:23972684-23972703 | None:intergenic | 20.0% |
| !! | ATAACCATGATAATTTACAA+GGG | - | chr1_3:23971469-23971488 | None:intergenic | 20.0% |
| !! | TTAAGTATTTACATTAGTTG+AGG | - | chr1_3:23971727-23971746 | None:intergenic | 20.0% |
| !! | AAAATTAACAGAGTATACAT+AGG | + | chr1_3:23971804-23971823 | Msa0110820:CDS | 20.0% |
| !!! | TGTTTGAAATAAAATCTTGA+AGG | + | chr1_3:23971927-23971946 | Msa0110820:intron | 20.0% |
| !! | AAGAACGTTGTAAATTATAT+AGG | - | chr1_3:23972121-23972140 | None:intergenic | 20.0% |
| !! | AAAATTCTCATGGTAAATAA+TGG | + | chr1_3:23972328-23972347 | Msa0110820:intron | 20.0% |
| !! | ATTAGAATCTTTATCATTTG+TGG | + | chr1_3:23972440-23972459 | Msa0110820:intron | 20.0% |
| !!! | AAATTTGAAACTTTTTTGGT+TGG | - | chr1_3:23972680-23972699 | None:intergenic | 20.0% |
| !!! | GAAGAAATTTGAAACTTTTT+TGG | - | chr1_3:23972684-23972703 | None:intergenic | 20.0% |
| ! | TATTTGTATGTAATGCTATC+CGG | - | chr1_3:23971153-23971172 | None:intergenic | 25.0% |
| !! | AGCATTTTATACCATATCAA+TGG | + | chr1_3:23971378-23971397 | Msa0110820:intron | 25.0% |
| ! | CATAACCATGATAATTTACA+AGG | - | chr1_3:23971470-23971489 | None:intergenic | 25.0% |
| ! | CTTGTAAATTATCATGGTTA+TGG | + | chr1_3:23971468-23971487 | Msa0110820:intron | 25.0% |
| !!! | TGAATAAAACTTGTTACCAA+CGG | - | chr1_3:23971554-23971573 | None:intergenic | 25.0% |
| ! | TGAAATAAAATCTTGAAGGT+TGG | + | chr1_3:23971931-23971950 | Msa0110820:intron | 25.0% |
| ! | ACGTTGTAAATTATATAGGA+TGG | - | chr1_3:23972117-23972136 | None:intergenic | 25.0% |
| ! | ATTTAAAAGATCGGAATTTG+TGG | - | chr1_3:23972508-23972527 | None:intergenic | 25.0% |
| ! | CAAATTTCTTCATTCCAAAT+TGG | + | chr1_3:23972693-23972712 | Msa0110820:intron | 25.0% |
| ! | TATTTGTATGTAATGCTATC+CGG | - | chr1_3:23971153-23971172 | None:intergenic | 25.0% |
| !! | AGCATTTTATACCATATCAA+TGG | + | chr1_3:23971378-23971397 | Msa0110820:intron | 25.0% |
| ! | CATAACCATGATAATTTACA+AGG | - | chr1_3:23971470-23971489 | None:intergenic | 25.0% |
| ! | CTTGTAAATTATCATGGTTA+TGG | + | chr1_3:23971468-23971487 | Msa0110820:intron | 25.0% |
| !!! | TGAATAAAACTTGTTACCAA+CGG | - | chr1_3:23971554-23971573 | None:intergenic | 25.0% |
| ! | TGAAATAAAATCTTGAAGGT+TGG | + | chr1_3:23971931-23971950 | Msa0110820:intron | 25.0% |
| ! | ACGTTGTAAATTATATAGGA+TGG | - | chr1_3:23972117-23972136 | None:intergenic | 25.0% |
| ! | ATTTAAAAGATCGGAATTTG+TGG | - | chr1_3:23972508-23972527 | None:intergenic | 25.0% |
| ! | CAAATTTCTTCATTCCAAAT+TGG | + | chr1_3:23972693-23972712 | Msa0110820:intron | 25.0% |
| TAGATTTGATGTCTCAAAGT+TGG | + | chr1_3:23971618-23971637 | Msa0110820:CDS | 30.0% | |
| AGAAACAACTTATCGATCAA+TGG | - | chr1_3:23971682-23971701 | None:intergenic | 30.0% | |
| AGTATACATAGGATCTTGTA+CGG | + | chr1_3:23971815-23971834 | Msa0110820:CDS | 30.0% | |
| TGGAAAAACAGAAGATTTCA+TGG | + | chr1_3:23971839-23971858 | Msa0110820:CDS | 30.0% | |
| CAGATATGATGTTCTACATT+AGG | - | chr1_3:23972197-23972216 | None:intergenic | 30.0% | |
| CTACTAGTGATATATGAACA+TGG | - | chr1_3:23972291-23972310 | None:intergenic | 30.0% | |
| ! | TGTTATTAACCAGGATTTTC+AGG | - | chr1_3:23972548-23972567 | None:intergenic | 30.0% |
| GGATTTGAATGTTATTAACC+AGG | - | chr1_3:23972557-23972576 | None:intergenic | 30.0% | |
| ATAACATTCAAATCCATGAC+TGG | + | chr1_3:23972562-23972581 | Msa0110820:intron | 30.0% | |
| ATACATGGTTAATAAAGTCG+TGG | - | chr1_3:23972644-23972663 | None:intergenic | 30.0% | |
| ! | TGAGAATCTGAAATTCTGAA+TGG | + | chr1_3:23972773-23972792 | Msa0110820:intron | 30.0% |
| AACCACAAATAGAAACTTTC+CGG | + | chr1_3:23972840-23972859 | Msa0110820:CDS | 30.0% | |
| TAGATTTGATGTCTCAAAGT+TGG | + | chr1_3:23971618-23971637 | Msa0110820:CDS | 30.0% | |
| AGAAACAACTTATCGATCAA+TGG | - | chr1_3:23971682-23971701 | None:intergenic | 30.0% | |
| AGTATACATAGGATCTTGTA+CGG | + | chr1_3:23971815-23971834 | Msa0110820:CDS | 30.0% | |
| TGGAAAAACAGAAGATTTCA+TGG | + | chr1_3:23971839-23971858 | Msa0110820:CDS | 30.0% | |
| CAGATATGATGTTCTACATT+AGG | - | chr1_3:23972197-23972216 | None:intergenic | 30.0% | |
| CTACTAGTGATATATGAACA+TGG | - | chr1_3:23972291-23972310 | None:intergenic | 30.0% | |
| ! | TGTTATTAACCAGGATTTTC+AGG | - | chr1_3:23972548-23972567 | None:intergenic | 30.0% |
| GGATTTGAATGTTATTAACC+AGG | - | chr1_3:23972557-23972576 | None:intergenic | 30.0% | |
| ATAACATTCAAATCCATGAC+TGG | + | chr1_3:23972562-23972581 | Msa0110820:intron | 30.0% | |
| ATACATGGTTAATAAAGTCG+TGG | - | chr1_3:23972644-23972663 | None:intergenic | 30.0% | |
| ! | TGAGAATCTGAAATTCTGAA+TGG | + | chr1_3:23972773-23972792 | Msa0110820:intron | 30.0% |
| AACCACAAATAGAAACTTTC+CGG | + | chr1_3:23972840-23972859 | Msa0110820:CDS | 30.0% | |
| !! | AAAGAATGGTGTTATTCCTC+CGG | + | chr1_3:23971131-23971150 | Msa0110820:CDS | 35.0% |
| ! | TGATCTTTGTGCCATTGATA+TGG | - | chr1_3:23971392-23971411 | None:intergenic | 35.0% |
| GCATCCCTTGTAAATTATCA+TGG | + | chr1_3:23971462-23971481 | Msa0110820:intron | 35.0% | |
| GACTGAATATTAGTATCCGT+TGG | + | chr1_3:23971535-23971554 | Msa0110820:intron | 35.0% | |
| ATCAATGGAAATGCAACCAA+AGG | - | chr1_3:23971667-23971686 | None:intergenic | 35.0% | |
| GTATACATAGGATCTTGTAC+GGG | + | chr1_3:23971816-23971835 | Msa0110820:CDS | 35.0% | |
| ! | TACTAAAGACGTCTAAGACT+CGG | - | chr1_3:23971992-23972011 | None:intergenic | 35.0% |
| TGTCTTAACATGTGTAATCC+CGG | + | chr1_3:23972041-23972060 | Msa0110820:intron | 35.0% | |
| ATACATGAAAACACGAAGAC+CGG | - | chr1_3:23972063-23972082 | None:intergenic | 35.0% | |
| AACATCATATCTGTATTCGC+AGG | + | chr1_3:23972204-23972223 | Msa0110820:intron | 35.0% | |
| ACATCATATCTGTATTCGCA+GGG | + | chr1_3:23972205-23972224 | Msa0110820:intron | 35.0% | |
| GGTTAATAAAGTCGTGGATT+TGG | - | chr1_3:23972638-23972657 | None:intergenic | 35.0% | |
| ATGTTACTCGAACACCAATT+TGG | - | chr1_3:23972710-23972729 | None:intergenic | 35.0% | |
| ACCACAAATAGAAACTTTCC+GGG | + | chr1_3:23972841-23972860 | Msa0110820:CDS | 35.0% | |
| CAGGGAAGGTGAAATATATT+TGG | + | chr1_3:23972876-23972895 | Msa0110820:CDS | 35.0% | |
| TCTTGGATCAGTAACATAAC+CGG | - | chr1_3:23972935-23972954 | None:intergenic | 35.0% | |
| !! | AAAGAATGGTGTTATTCCTC+CGG | + | chr1_3:23971131-23971150 | Msa0110820:CDS | 35.0% |
| ! | TGATCTTTGTGCCATTGATA+TGG | - | chr1_3:23971392-23971411 | None:intergenic | 35.0% |
| GCATCCCTTGTAAATTATCA+TGG | + | chr1_3:23971462-23971481 | Msa0110820:intron | 35.0% | |
| GACTGAATATTAGTATCCGT+TGG | + | chr1_3:23971535-23971554 | Msa0110820:intron | 35.0% | |
| ATCAATGGAAATGCAACCAA+AGG | - | chr1_3:23971667-23971686 | None:intergenic | 35.0% | |
| GTATACATAGGATCTTGTAC+GGG | + | chr1_3:23971816-23971835 | Msa0110820:CDS | 35.0% | |
| ! | TACTAAAGACGTCTAAGACT+CGG | - | chr1_3:23971992-23972011 | None:intergenic | 35.0% |
| TGTCTTAACATGTGTAATCC+CGG | + | chr1_3:23972041-23972060 | Msa0110820:intron | 35.0% | |
| ATACATGAAAACACGAAGAC+CGG | - | chr1_3:23972063-23972082 | None:intergenic | 35.0% | |
| AACATCATATCTGTATTCGC+AGG | + | chr1_3:23972204-23972223 | Msa0110820:intron | 35.0% | |
| ACATCATATCTGTATTCGCA+GGG | + | chr1_3:23972205-23972224 | Msa0110820:intron | 35.0% | |
| GGTTAATAAAGTCGTGGATT+TGG | - | chr1_3:23972638-23972657 | None:intergenic | 35.0% | |
| ATGTTACTCGAACACCAATT+TGG | - | chr1_3:23972710-23972729 | None:intergenic | 35.0% | |
| ACCACAAATAGAAACTTTCC+GGG | + | chr1_3:23972841-23972860 | Msa0110820:CDS | 35.0% | |
| CAGGGAAGGTGAAATATATT+TGG | + | chr1_3:23972876-23972895 | Msa0110820:CDS | 35.0% | |
| TCTTGGATCAGTAACATAAC+CGG | - | chr1_3:23972935-23972954 | None:intergenic | 35.0% | |
| TTGTATGTAATGCTATCCGG+AGG | - | chr1_3:23971150-23971169 | None:intergenic | 40.0% | |
| TACATGAAAACACGAAGACC+GGG | - | chr1_3:23972062-23972081 | None:intergenic | 40.0% | |
| ! | GGTCTTCGTGTTTTCATGTA+TGG | + | chr1_3:23972062-23972081 | Msa0110820:intron | 40.0% |
| TCTGTATTCGCAGGGTAAAA+AGG | + | chr1_3:23972213-23972232 | Msa0110820:intron | 40.0% | |
| !!! | TCTTTTTCAACGTGCATGTG+TGG | + | chr1_3:23972359-23972378 | Msa0110820:intron | 40.0% |
| !!! | CTTTTTCAACGTGCATGTGT+GGG | + | chr1_3:23972360-23972379 | Msa0110820:intron | 40.0% |
| TACGTTCTGGCGAGAAATAA+CGG | - | chr1_3:23972390-23972409 | None:intergenic | 40.0% | |
| CGTAATGATCAACTACGTTC+TGG | - | chr1_3:23972403-23972422 | None:intergenic | 40.0% | |
| AGTTGAATGCCTGAAAATCC+TGG | + | chr1_3:23972536-23972555 | Msa0110820:intron | 40.0% | |
| TACTTCCATTGCTGATGTGT+TGG | + | chr1_3:23972798-23972817 | Msa0110820:intron | 40.0% | |
| TCCCGGAAAGTTTCTATTTG+TGG | - | chr1_3:23972845-23972864 | None:intergenic | 40.0% | |
| TTGTATGTAATGCTATCCGG+AGG | - | chr1_3:23971150-23971169 | None:intergenic | 40.0% | |
| TACATGAAAACACGAAGACC+GGG | - | chr1_3:23972062-23972081 | None:intergenic | 40.0% | |
| ! | GGTCTTCGTGTTTTCATGTA+TGG | + | chr1_3:23972062-23972081 | Msa0110820:intron | 40.0% |
| TCTGTATTCGCAGGGTAAAA+AGG | + | chr1_3:23972213-23972232 | Msa0110820:intron | 40.0% | |
| !!! | TCTTTTTCAACGTGCATGTG+TGG | + | chr1_3:23972359-23972378 | Msa0110820:intron | 40.0% |
| !!! | CTTTTTCAACGTGCATGTGT+GGG | + | chr1_3:23972360-23972379 | Msa0110820:intron | 40.0% |
| TACGTTCTGGCGAGAAATAA+CGG | - | chr1_3:23972390-23972409 | None:intergenic | 40.0% | |
| CGTAATGATCAACTACGTTC+TGG | - | chr1_3:23972403-23972422 | None:intergenic | 40.0% | |
| AGTTGAATGCCTGAAAATCC+TGG | + | chr1_3:23972536-23972555 | Msa0110820:intron | 40.0% | |
| TACTTCCATTGCTGATGTGT+TGG | + | chr1_3:23972798-23972817 | Msa0110820:intron | 40.0% | |
| TCCCGGAAAGTTTCTATTTG+TGG | - | chr1_3:23972845-23972864 | None:intergenic | 40.0% | |
| ACGGATGACATTGTGCAACA+TGG | + | chr1_3:23971092-23971111 | Msa0110820:CDS | 45.0% | |
| TGCAACATGGTTGTTGAAGC+TGG | + | chr1_3:23971105-23971124 | Msa0110820:CDS | 45.0% | |
| AACATGGTTGTTGAAGCTGG+AGG | + | chr1_3:23971108-23971127 | Msa0110820:CDS | 45.0% | |
| GTTGAAGCTGGAGGAAAGAA+TGG | + | chr1_3:23971117-23971136 | Msa0110820:CDS | 45.0% | |
| TGCAACCAAAGGACTAACCT+TGG | - | chr1_3:23971656-23971675 | None:intergenic | 45.0% | |
| ATTGTTGCAGCCTCATTCTC+CGG | + | chr1_3:23971746-23971765 | Msa0110820:intron | 45.0% | |
| TACATAGGATCTTGTACGGG+TGG | + | chr1_3:23971819-23971838 | Msa0110820:CDS | 45.0% | |
| CAACTGAACTACACCAGTCA+TGG | - | chr1_3:23972578-23972597 | None:intergenic | 45.0% | |
| GACTGGTGTAGTTCAGTTGA+TGG | + | chr1_3:23972579-23972598 | Msa0110820:intron | 45.0% | |
| GGTAGCGCATTTCACATACA+TGG | - | chr1_3:23972659-23972678 | None:intergenic | 45.0% | |
| CACAACCAACACATCAGCAA+TGG | - | chr1_3:23972806-23972825 | None:intergenic | 45.0% | |
| TAGAAACTTTCCGGGACGAA+TGG | + | chr1_3:23972849-23972868 | Msa0110820:CDS | 45.0% | |
| AGAAACTTTCCGGGACGAAT+GGG | + | chr1_3:23972850-23972869 | Msa0110820:CDS | 45.0% | |
| ACGGATGACATTGTGCAACA+TGG | + | chr1_3:23971092-23971111 | Msa0110820:CDS | 45.0% | |
| TGCAACATGGTTGTTGAAGC+TGG | + | chr1_3:23971105-23971124 | Msa0110820:CDS | 45.0% | |
| AACATGGTTGTTGAAGCTGG+AGG | + | chr1_3:23971108-23971127 | Msa0110820:CDS | 45.0% | |
| GTTGAAGCTGGAGGAAAGAA+TGG | + | chr1_3:23971117-23971136 | Msa0110820:CDS | 45.0% | |
| TGCAACCAAAGGACTAACCT+TGG | - | chr1_3:23971656-23971675 | None:intergenic | 45.0% | |
| ATTGTTGCAGCCTCATTCTC+CGG | + | chr1_3:23971746-23971765 | Msa0110820:intron | 45.0% | |
| TACATAGGATCTTGTACGGG+TGG | + | chr1_3:23971819-23971838 | Msa0110820:CDS | 45.0% | |
| CAACTGAACTACACCAGTCA+TGG | - | chr1_3:23972578-23972597 | None:intergenic | 45.0% | |
| GACTGGTGTAGTTCAGTTGA+TGG | + | chr1_3:23972579-23972598 | Msa0110820:intron | 45.0% | |
| GGTAGCGCATTTCACATACA+TGG | - | chr1_3:23972659-23972678 | None:intergenic | 45.0% | |
| CACAACCAACACATCAGCAA+TGG | - | chr1_3:23972806-23972825 | None:intergenic | 45.0% | |
| TAGAAACTTTCCGGGACGAA+TGG | + | chr1_3:23972849-23972868 | Msa0110820:CDS | 45.0% | |
| AGAAACTTTCCGGGACGAAT+GGG | + | chr1_3:23972850-23972869 | Msa0110820:CDS | 45.0% | |
| TGTCTCAAAGTTGGAGCCGT+TGG | + | chr1_3:23971627-23971646 | Msa0110820:CDS | 50.0% | |
| TTCTCCGGATAACCGTGCTT+TGG | + | chr1_3:23971761-23971780 | Msa0110820:CDS | 50.0% | |
| CTTGCCAAAGCACGGTTATC+CGG | - | chr1_3:23971768-23971787 | None:intergenic | 50.0% | |
| TGCACTCTCTTGCCAAAGCA+CGG | - | chr1_3:23971776-23971795 | None:intergenic | 50.0% | |
| ! | TGCTTTGGCAAGAGAGTGCA+AGG | + | chr1_3:23971776-23971795 | Msa0110820:CDS | 50.0% |
| TGCAGACCTTCTGTGTTGCA+GGG | - | chr1_3:23972261-23972280 | None:intergenic | 50.0% | |
| TTGCAGACCTTCTGTGTTGC+AGG | - | chr1_3:23972262-23972281 | None:intergenic | 50.0% | |
| !! | TGCTGATGTGTTGGTTGTGC+AGG | + | chr1_3:23972807-23972826 | Msa0110820:intron | 50.0% |
| GCAGATGCTGCAGCTGTATA+TGG | - | chr1_3:23972907-23972926 | None:intergenic | 50.0% | |
| TGTCTCAAAGTTGGAGCCGT+TGG | + | chr1_3:23971627-23971646 | Msa0110820:CDS | 50.0% | |
| TTCTCCGGATAACCGTGCTT+TGG | + | chr1_3:23971761-23971780 | Msa0110820:CDS | 50.0% | |
| CTTGCCAAAGCACGGTTATC+CGG | - | chr1_3:23971768-23971787 | None:intergenic | 50.0% | |
| TGCACTCTCTTGCCAAAGCA+CGG | - | chr1_3:23971776-23971795 | None:intergenic | 50.0% | |
| ! | TGCTTTGGCAAGAGAGTGCA+AGG | + | chr1_3:23971776-23971795 | Msa0110820:CDS | 50.0% |
| TGCAGACCTTCTGTGTTGCA+GGG | - | chr1_3:23972261-23972280 | None:intergenic | 50.0% | |
| TTGCAGACCTTCTGTGTTGC+AGG | - | chr1_3:23972262-23972281 | None:intergenic | 50.0% | |
| !! | TGCTGATGTGTTGGTTGTGC+AGG | + | chr1_3:23972807-23972826 | Msa0110820:intron | 50.0% |
| GCAGATGCTGCAGCTGTATA+TGG | - | chr1_3:23972907-23972926 | None:intergenic | 50.0% | |
| CTCAAAGTTGGAGCCGTTGG+TGG | + | chr1_3:23971630-23971649 | Msa0110820:CDS | 55.0% | |
| GGACTAACCTTGGCCACCAA+CGG | - | chr1_3:23971646-23971665 | None:intergenic | 55.0% | |
| ! | GGTGGCCAAGGTTAGTCCTT+TGG | + | chr1_3:23971648-23971667 | Msa0110820:intron | 55.0% |
| GCACGGTTATCCGGAGAATG+AGG | - | chr1_3:23971759-23971778 | None:intergenic | 55.0% | |
| GTTGCAGGGACGAGAAACGT+TGG | - | chr1_3:23972247-23972266 | None:intergenic | 55.0% | |
| TCTCGTCCCTGCAACACAGA+AGG | + | chr1_3:23972252-23972271 | Msa0110820:intron | 55.0% | |
| ! | GCTGCAGCATCTGCATTGAC+CGG | + | chr1_3:23972913-23972932 | Msa0110820:CDS | 55.0% |
| CTCAAAGTTGGAGCCGTTGG+TGG | + | chr1_3:23971630-23971649 | Msa0110820:CDS | 55.0% | |
| GGACTAACCTTGGCCACCAA+CGG | - | chr1_3:23971646-23971665 | None:intergenic | 55.0% | |
| ! | GGTGGCCAAGGTTAGTCCTT+TGG | + | chr1_3:23971648-23971667 | Msa0110820:intron | 55.0% |
| GCACGGTTATCCGGAGAATG+AGG | - | chr1_3:23971759-23971778 | None:intergenic | 55.0% | |
| GTTGCAGGGACGAGAAACGT+TGG | - | chr1_3:23972247-23972266 | None:intergenic | 55.0% | |
| TCTCGTCCCTGCAACACAGA+AGG | + | chr1_3:23972252-23972271 | Msa0110820:intron | 55.0% | |
| ! | GCTGCAGCATCTGCATTGAC+CGG | + | chr1_3:23972913-23972932 | Msa0110820:CDS | 55.0% |
| TTCCGGGACGAATGGGACAC+AGG | + | chr1_3:23972857-23972876 | Msa0110820:CDS | 60.0% | |
| TCCGGGACGAATGGGACACA+GGG | + | chr1_3:23972858-23972877 | Msa0110820:CDS | 60.0% | |
| TCCCTGTGTCCCATTCGTCC+CGG | - | chr1_3:23972862-23972881 | None:intergenic | 60.0% | |
| GGACGAATGGGACACAGGGA+AGG | + | chr1_3:23972862-23972881 | Msa0110820:CDS | 60.0% | |
| TTCCGGGACGAATGGGACAC+AGG | + | chr1_3:23972857-23972876 | Msa0110820:CDS | 60.0% | |
| TCCGGGACGAATGGGACACA+GGG | + | chr1_3:23972858-23972877 | Msa0110820:CDS | 60.0% | |
| TCCCTGTGTCCCATTCGTCC+CGG | - | chr1_3:23972862-23972881 | None:intergenic | 60.0% | |
| GGACGAATGGGACACAGGGA+AGG | + | chr1_3:23972862-23972881 | Msa0110820:CDS | 60.0% | |
| !! | GTTGGAGCCGTTGGTGGCCA+AGG | + | chr1_3:23971636-23971655 | Msa0110820:CDS | 65.0% |
| !! | GTTGGAGCCGTTGGTGGCCA+AGG | + | chr1_3:23971636-23971655 | Msa0110820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 23971084 | 23972969 | 23971084 | ID=Msa0110820;Name=Msa0110820 |
| chr1_3 | mRNA | 23971084 | 23972969 | 23971084 | ID=Msa0110820-mRNA-1;Parent=Msa0110820;Name=Msa0110820-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|0.33|0.25|4|0|140 |
| chr1_3 | exon | 23971084 | 23971193 | 23971084 | ID=Msa0110820-mRNA-1:exon:8323;Parent=Msa0110820-mRNA-1 |
| chr1_3 | exon | 23971603 | 23971657 | 23971603 | ID=Msa0110820-mRNA-1:exon:8324;Parent=Msa0110820-mRNA-1 |
| chr1_3 | exon | 23971756 | 23971872 | 23971756 | ID=Msa0110820-mRNA-1:exon:8325;Parent=Msa0110820-mRNA-1 |
| chr1_3 | exon | 23972829 | 23972969 | 23972829 | ID=Msa0110820-mRNA-1:exon:8326;Parent=Msa0110820-mRNA-1 |
| chr1_3 | CDS | 23971084 | 23971193 | 23971084 | ID=Msa0110820-mRNA-1:cds;Parent=Msa0110820-mRNA-1 |
| chr1_3 | CDS | 23971603 | 23971657 | 23971603 | ID=Msa0110820-mRNA-1:cds;Parent=Msa0110820-mRNA-1 |
| chr1_3 | CDS | 23971756 | 23971872 | 23971756 | ID=Msa0110820-mRNA-1:cds;Parent=Msa0110820-mRNA-1 |
| chr1_3 | CDS | 23972829 | 23972969 | 23972829 | ID=Msa0110820-mRNA-1:cds;Parent=Msa0110820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
