Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111670 | KEH19967.1 | 33.333 | 204 | 80 | 3 | 4 | 152 | 10 | 212 | 2.48e-17 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111670 | A0A072TRE9 | 33.333 | 204 | 80 | 3 | 4 | 152 | 10 | 212 | 1.19e-17 | 87.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019530 | Msa0111670 | 0.805285 | 1.437430e-49 | -8.615850e-47 |
| Msa0111670 | Msa0157800 | 0.801936 | 7.115758e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111670 | MtrunA17_Chr8g0365081 | 64.912 | 57 | 20 | 0 | 4 | 60 | 10 | 66 | 9.75e-19 | 78.6 |
| Msa0111670 | MtrunA17_Chr8g0361961 | 62.069 | 58 | 22 | 0 | 4 | 61 | 129 | 186 | 3.04e-16 | 75.1 |
| Msa0111670 | MtrunA17_Chr7g0241461 | 54.717 | 53 | 24 | 0 | 7 | 59 | 246 | 298 | 6.67e-14 | 69.7 |
| Msa0111670 | MtrunA17_Chr3g0096291 | 52.727 | 55 | 26 | 0 | 6 | 60 | 245 | 299 | 2.91e-12 | 64.3 |
| Msa0111670 | MtrunA17_Chr1g0174781 | 53.846 | 52 | 24 | 0 | 9 | 60 | 66 | 117 | 3.98e-12 | 61.6 |
| Msa0111670 | MtrunA17_Chr6g0468941 | 53.846 | 52 | 24 | 0 | 7 | 58 | 116 | 167 | 9.85e-12 | 63.2 |
| Msa0111670 | MtrunA17_Chr7g0230881 | 51.923 | 52 | 25 | 0 | 9 | 60 | 190 | 241 | 2.44e-11 | 61.2 |
| Msa0111670 | MtrunA17_Chr4g0022701 | 49.153 | 59 | 30 | 0 | 9 | 67 | 80 | 138 | 5.48e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACATGTATAGCTATATTA+TGG | 0.216698 | 1_3:-25749243 | Msa0111670:CDS |
| GTTGGCTTCCAAGGCTGTTC+AGG | 0.255579 | 1_3:+25749202 | Msa0111650:intron |
| AAGAGTCTGAAGAGACAATA+AGG | 0.267225 | 1_3:-25748915 | Msa0111670:CDS |
| AAGGTTTCAAGATTGGTTTC+AGG | 0.274698 | 1_3:+25748141 | Msa0111650:intron |
| CCTCTTCCTGTTGGCTTCCA+AGG | 0.306419 | 1_3:+25749193 | Msa0111650:intron |
| TCTGAAGTAGTTTCCCTTGA+TGG | 0.307427 | 1_3:+25749500 | Msa0111650:intron |
| ATACTTTATCTTCATGTTAG+TGG | 0.322601 | 1_3:+25748804 | Msa0111650:intron |
| CATGTTAGTGGCCAAGATCT+TGG | 0.332232 | 1_3:+25748816 | Msa0111650:intron |
| TTCAGATATAAGTCTTGTAT+AGG | 0.346983 | 1_3:+25749528 | Msa0111650:intron |
| AATATCAAAGGTTTCAAGAT+TGG | 0.351414 | 1_3:+25748134 | Msa0111650:intron |
| ATGAAGATAAAGTATGAATA+TGG | 0.362194 | 1_3:-25748796 | Msa0111670:intron |
| AGAGTCTGAAGAGACAATAA+GGG | 0.371680 | 1_3:-25748914 | Msa0111670:CDS |
| GGCCAGAGAGTTGGTTGTTA+AGG | 0.378974 | 1_3:-25748878 | Msa0111670:CDS |
| TCAGATATAAGTCTTGTATA+GGG | 0.385774 | 1_3:+25749529 | Msa0111650:intron |
| AAGGTGACACAGGAGATAAA+AGG | 0.403695 | 1_3:-25748859 | Msa0111670:CDS |
| AGCCTCTGATGATAACAATA+TGG | 0.410296 | 1_3:-25748052 | Msa0111670:CDS |
| CAAGGCTGTTCAGGATGATC+AGG | 0.445387 | 1_3:+25749211 | Msa0111650:intron |
| GGTCACCTTCCTCTTCCTGT+TGG | 0.448770 | 1_3:+25749184 | Msa0111650:intron |
| AGAAGAGAGTTCCAAGATCT+TGG | 0.464162 | 1_3:-25748827 | Msa0111670:CDS |
| GACATGTATAGCTATATTAT+GGG | 0.465711 | 1_3:-25749242 | Msa0111670:CDS |
| ATGAAGAGGGGCAACTAGAA+AGG | 0.468905 | 1_3:+25748173 | Msa0111650:intron |
| CTGATCATCCTGAACAGCCT+TGG | 0.469250 | 1_3:-25749210 | Msa0111670:CDS |
| CACCTTAACAACCAACTCTC+TGG | 0.469552 | 1_3:+25748876 | Msa0111650:intron |
| GAACAGCCTTGGAAGCCAAC+AGG | 0.476276 | 1_3:-25749199 | Msa0111670:CDS |
| TGAAACCCAACTAGAAAACT+TGG | 0.496808 | 1_3:-25748088 | Msa0111670:CDS |
| CCTTGGAAGCCAACAGGAAG+AGG | 0.505999 | 1_3:-25749193 | Msa0111670:CDS |
| ATATCTGAAATCTTCCATCA+AGG | 0.506523 | 1_3:-25749514 | Msa0111670:CDS |
| GAAGATAGTTGAGAAGAAGA+AGG | 0.523583 | 1_3:-25749392 | Msa0111670:intron |
| GAAGAGCTTGGAACTTGCAC+AGG | 0.529413 | 1_3:-25749448 | Msa0111670:CDS |
| GTAGCTTCTGATGAAGAGCT+TGG | 0.535240 | 1_3:-25749460 | Msa0111670:CDS |
| CAGGTTTAGCAAAATGAAGA+GGG | 0.536422 | 1_3:+25748160 | Msa0111650:intron |
| TATCTGAAATCTTCCATCAA+GGG | 0.544329 | 1_3:-25749513 | Msa0111670:CDS |
| AGGTGACACAGGAGATAAAA+GGG | 0.547291 | 1_3:-25748858 | Msa0111670:CDS |
| TCTTCTCAACTATCTTCATG+TGG | 0.550671 | 1_3:+25749398 | Msa0111650:intron |
| TTCAGACATGATAATATCAA+AGG | 0.551511 | 1_3:+25748122 | Msa0111650:intron |
| ACAGATTGAGGCCAGAGAGT+TGG | 0.551921 | 1_3:-25748887 | Msa0111670:CDS |
| TGAAGAGGGGCAACTAGAAA+GGG | 0.558778 | 1_3:+25748174 | Msa0111650:intron |
| TCTATCAGACATGGAATCAA+AGG | 0.572025 | 1_3:-25749566 | None:intergenic |
| TGATGATAACAATATGGCCA+TGG | 0.579306 | 1_3:-25748046 | Msa0111670:CDS |
| GGCCATATTGTTATCATCAG+AGG | 0.583747 | 1_3:+25748050 | Msa0111650:intron |
| TCAGGTTTAGCAAAATGAAG+AGG | 0.594774 | 1_3:+25748159 | Msa0111650:intron |
| AATAAGGGGAAAACAGATTG+AGG | 0.607350 | 1_3:-25748899 | Msa0111670:CDS |
| GAGGGGCAACTAGAAAGGGT+TGG | 0.609409 | 1_3:+25748178 | Msa0111650:intron |
| GAGTCTGAAGAGACAATAAG+GGG | 0.614243 | 1_3:-25748913 | Msa0111670:CDS |
| GTTGGTTGTTAAGGTGACAC+AGG | 0.617149 | 1_3:-25748869 | Msa0111670:CDS |
| AGGAGCTTATGATACTTCCA+TGG | 0.621292 | 1_3:+25748029 | Msa0111650:intron |
| GGAAGCCAACAGGAAGAGGA+AGG | 0.634283 | 1_3:-25749189 | Msa0111670:intron |
| AGGTTTAGCAAAATGAAGAG+GGG | 0.636551 | 1_3:+25748161 | Msa0111650:intron |
| CTTCAGAAGCTACAACACGT+TGG | 0.658839 | 1_3:-25749484 | Msa0111670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAAAAAAAACATAAAG+AGG | - | chr1_3:25748650-25748669 | Msa0111670:intron | 15.0% |
| !! | TTCAAAAAAAAAACATAAAG+AGG | - | chr1_3:25748650-25748669 | Msa0111670:intron | 15.0% |
| !! | ATGAAGATAAAGTATGAATA+TGG | - | chr1_3:25748795-25748814 | Msa0111670:intron | 20.0% |
| !! | ATGAAGATAAAGTATGAATA+TGG | - | chr1_3:25748795-25748814 | Msa0111670:intron | 20.0% |
| !! | TCAGATATAAGTCTTGTATA+GGG | + | chr1_3:25748065-25748084 | Msa0111650:intron | 25.0% |
| !! | TTCAGATATAAGTCTTGTAT+AGG | + | chr1_3:25748066-25748085 | Msa0111650:intron | 25.0% |
| ! | AGACATGTATAGCTATATTA+TGG | - | chr1_3:25748348-25748367 | Msa0111670:intron | 25.0% |
| ! | GACATGTATAGCTATATTAT+GGG | - | chr1_3:25748349-25748368 | Msa0111670:intron | 25.0% |
| ! | GTTATCTTTATCTTCTTTGT+TGG | + | chr1_3:25748463-25748482 | Msa0111650:intron | 25.0% |
| ! | TACATCTTATGATGTTCAAA+AGG | - | chr1_3:25748489-25748508 | Msa0111670:intron | 25.0% |
| ! | ATACTTTATCTTCATGTTAG+TGG | + | chr1_3:25748790-25748809 | Msa0111650:intron | 25.0% |
| !! | TTTGATGTTTGTTAGTGTAT+GGG | + | chr1_3:25749255-25749274 | Msa0111650:intron | 25.0% |
| !!! | TTTTGATGTTTGTTAGTGTA+TGG | + | chr1_3:25749256-25749275 | Msa0111650:intron | 25.0% |
| ! | AGATGTATCAAAGATTGTTT+AGG | + | chr1_3:25749376-25749395 | Msa0111650:intron | 25.0% |
| ! | AATATCAAAGGTTTCAAGAT+TGG | + | chr1_3:25749460-25749479 | Msa0111650:intron | 25.0% |
| ! | TTCAGACATGATAATATCAA+AGG | + | chr1_3:25749472-25749491 | Msa0111650:intron | 25.0% |
| !! | TCAGATATAAGTCTTGTATA+GGG | + | chr1_3:25748065-25748084 | Msa0111650:intron | 25.0% |
| !! | TTCAGATATAAGTCTTGTAT+AGG | + | chr1_3:25748066-25748085 | Msa0111650:intron | 25.0% |
| ! | AGACATGTATAGCTATATTA+TGG | - | chr1_3:25748348-25748367 | Msa0111670:intron | 25.0% |
| ! | GACATGTATAGCTATATTAT+GGG | - | chr1_3:25748349-25748368 | Msa0111670:intron | 25.0% |
| ! | GTTATCTTTATCTTCTTTGT+TGG | + | chr1_3:25748463-25748482 | Msa0111650:intron | 25.0% |
| ! | TACATCTTATGATGTTCAAA+AGG | - | chr1_3:25748489-25748508 | Msa0111670:intron | 25.0% |
| ! | ATACTTTATCTTCATGTTAG+TGG | + | chr1_3:25748790-25748809 | Msa0111650:intron | 25.0% |
| !! | TTTGATGTTTGTTAGTGTAT+GGG | + | chr1_3:25749255-25749274 | Msa0111650:intron | 25.0% |
| !!! | TTTTGATGTTTGTTAGTGTA+TGG | + | chr1_3:25749256-25749275 | Msa0111650:intron | 25.0% |
| ! | AGATGTATCAAAGATTGTTT+AGG | + | chr1_3:25749376-25749395 | Msa0111650:intron | 25.0% |
| ! | AATATCAAAGGTTTCAAGAT+TGG | + | chr1_3:25749460-25749479 | Msa0111650:intron | 25.0% |
| ! | TTCAGACATGATAATATCAA+AGG | + | chr1_3:25749472-25749491 | Msa0111650:intron | 25.0% |
| ! | ATATCTGAAATCTTCCATCA+AGG | - | chr1_3:25748077-25748096 | Msa0111670:CDS | 30.0% |
| ! | TATCTGAAATCTTCCATCAA+GGG | - | chr1_3:25748078-25748097 | Msa0111670:CDS | 30.0% |
| TTTAACCTTAGGATCTTATG+AGG | + | chr1_3:25748431-25748450 | Msa0111650:intron | 30.0% | |
| !! | TTCTTAAGTTGCATTTTCTC+TGG | + | chr1_3:25748607-25748626 | Msa0111650:intron | 30.0% |
| AAGTATCAACTTTCTTACTG+AGG | + | chr1_3:25748632-25748651 | Msa0111650:intron | 30.0% | |
| TCAGTAATGATATTTGCTTC+TGG | + | chr1_3:25748840-25748859 | Msa0111650:intron | 30.0% | |
| TTTGTATATACTGAGCTAAG+TGG | + | chr1_3:25748951-25748970 | Msa0111650:intron | 30.0% | |
| ATAGAACTCTCAAGTCAAAT+TGG | + | chr1_3:25749171-25749190 | Msa0111650:intron | 30.0% | |
| ! | TTGATGTTTGTTAGTGTATG+GGG | + | chr1_3:25749254-25749273 | Msa0111650:intron | 30.0% |
| !! | TGTTTGTTGTTGTTGTTGTT+TGG | + | chr1_3:25749320-25749339 | Msa0111650:intron | 30.0% |
| !! | ATCAAAGATTGTTTAGGTTG+AGG | + | chr1_3:25749370-25749389 | Msa0111650:intron | 30.0% |
| ! | ATATCTGAAATCTTCCATCA+AGG | - | chr1_3:25748077-25748096 | Msa0111670:CDS | 30.0% |
| ! | TATCTGAAATCTTCCATCAA+GGG | - | chr1_3:25748078-25748097 | Msa0111670:CDS | 30.0% |
| TTTAACCTTAGGATCTTATG+AGG | + | chr1_3:25748431-25748450 | Msa0111650:intron | 30.0% | |
| !! | TTCTTAAGTTGCATTTTCTC+TGG | + | chr1_3:25748607-25748626 | Msa0111650:intron | 30.0% |
| AAGTATCAACTTTCTTACTG+AGG | + | chr1_3:25748632-25748651 | Msa0111650:intron | 30.0% | |
| TCAGTAATGATATTTGCTTC+TGG | + | chr1_3:25748840-25748859 | Msa0111650:intron | 30.0% | |
| TTTGTATATACTGAGCTAAG+TGG | + | chr1_3:25748951-25748970 | Msa0111650:intron | 30.0% | |
| ATAGAACTCTCAAGTCAAAT+TGG | + | chr1_3:25749171-25749190 | Msa0111650:intron | 30.0% | |
| ! | TTGATGTTTGTTAGTGTATG+GGG | + | chr1_3:25749254-25749273 | Msa0111650:intron | 30.0% |
| !! | TGTTTGTTGTTGTTGTTGTT+TGG | + | chr1_3:25749320-25749339 | Msa0111650:intron | 30.0% |
| !! | ATCAAAGATTGTTTAGGTTG+AGG | + | chr1_3:25749370-25749389 | Msa0111650:intron | 30.0% |
| TCTTCTCAACTATCTTCATG+TGG | + | chr1_3:25748196-25748215 | Msa0111650:intron | 35.0% | |
| GAAGATAGTTGAGAAGAAGA+AGG | - | chr1_3:25748199-25748218 | Msa0111670:intron | 35.0% | |
| ! | CCATAAGTTGAGATAAGTTG+AGG | + | chr1_3:25748256-25748275 | Msa0111650:intron | 35.0% |
| CCTCAACTTATCTCAACTTA+TGG | - | chr1_3:25748253-25748272 | Msa0111670:intron | 35.0% | |
| CAACTTATCTCAACTTATGG+AGG | - | chr1_3:25748256-25748275 | Msa0111670:intron | 35.0% | |
| GGTCTTCCTTTGATATTAGT+GGG | + | chr1_3:25748286-25748305 | Msa0111650:intron | 35.0% | |
| ATGAAGTGAGCAAGCATATA+TGG | + | chr1_3:25748311-25748330 | Msa0111650:intron | 35.0% | |
| GGCTTCTAAACTTTAACCTT+AGG | + | chr1_3:25748442-25748461 | Msa0111650:intron | 35.0% | |
| GCTCAATTTCTTGTTCTTGT+AGG | + | chr1_3:25748547-25748566 | Msa0111650:intron | 35.0% | |
| AAGAGTCTGAAGAGACAATA+AGG | - | chr1_3:25748676-25748695 | Msa0111670:intron | 35.0% | |
| AGAGTCTGAAGAGACAATAA+GGG | - | chr1_3:25748677-25748696 | Msa0111670:intron | 35.0% | |
| AATAAGGGGAAAACAGATTG+AGG | - | chr1_3:25748692-25748711 | Msa0111670:intron | 35.0% | |
| CAAGAGAATCTAAGTGTACA+GGG | + | chr1_3:25748899-25748918 | Msa0111650:intron | 35.0% | |
| TCAAGAGAATCTAAGTGTAC+AGG | + | chr1_3:25748900-25748919 | Msa0111650:intron | 35.0% | |
| TATATACTGAGCTAAGTGGT+TGG | + | chr1_3:25748947-25748966 | Msa0111650:intron | 35.0% | |
| CCTAGTAAATAGGTTTGAAG+AGG | + | chr1_3:25749058-25749077 | Msa0111650:intron | 35.0% | |
| CCTCTTCAAACCTATTTACT+AGG | - | chr1_3:25749055-25749074 | Msa0111670:intron | 35.0% | |
| TTGTTCTTCTTATGTAGGGT+TGG | + | chr1_3:25749110-25749129 | Msa0111650:intron | 35.0% | |
| ! | CAGCTTGTTCTTCTTATGTA+GGG | + | chr1_3:25749114-25749133 | Msa0111650:intron | 35.0% |
| ! | TCAGCTTGTTCTTCTTATGT+AGG | + | chr1_3:25749115-25749134 | Msa0111650:intron | 35.0% |
| ATAAGAAGAACAAGCTGAGT+TGG | - | chr1_3:25749117-25749136 | Msa0111670:intron | 35.0% | |
| TTGAGAGTTCTATCAGAAGT+TGG | - | chr1_3:25749178-25749197 | Msa0111670:intron | 35.0% | |
| AGGTTTAGCAAAATGAAGAG+GGG | + | chr1_3:25749433-25749452 | Msa0111650:intron | 35.0% | |
| CAGGTTTAGCAAAATGAAGA+GGG | + | chr1_3:25749434-25749453 | Msa0111650:intron | 35.0% | |
| TCAGGTTTAGCAAAATGAAG+AGG | + | chr1_3:25749435-25749454 | Msa0111650:intron | 35.0% | |
| !! | AAGGTTTCAAGATTGGTTTC+AGG | + | chr1_3:25749453-25749472 | Msa0111650:intron | 35.0% |
| TGAAACCCAACTAGAAAACT+TGG | - | chr1_3:25749503-25749522 | Msa0111670:CDS | 35.0% | |
| !!! | TTGAGCCAAGTTTTCTAGTT+GGG | + | chr1_3:25749511-25749530 | Msa0111650:intron | 35.0% |
| !! | TTTGAGCCAAGTTTTCTAGT+TGG | + | chr1_3:25749512-25749531 | Msa0111650:intron | 35.0% |
| AGCCTCTGATGATAACAATA+TGG | - | chr1_3:25749539-25749558 | Msa0111670:CDS | 35.0% | |
| TGATGATAACAATATGGCCA+TGG | - | chr1_3:25749545-25749564 | Msa0111670:CDS | 35.0% | |
| TCTTCTCAACTATCTTCATG+TGG | + | chr1_3:25748196-25748215 | Msa0111650:intron | 35.0% | |
| GAAGATAGTTGAGAAGAAGA+AGG | - | chr1_3:25748199-25748218 | Msa0111670:intron | 35.0% | |
| ! | CCATAAGTTGAGATAAGTTG+AGG | + | chr1_3:25748256-25748275 | Msa0111650:intron | 35.0% |
| CCTCAACTTATCTCAACTTA+TGG | - | chr1_3:25748253-25748272 | Msa0111670:intron | 35.0% | |
| CAACTTATCTCAACTTATGG+AGG | - | chr1_3:25748256-25748275 | Msa0111670:intron | 35.0% | |
| GGTCTTCCTTTGATATTAGT+GGG | + | chr1_3:25748286-25748305 | Msa0111650:intron | 35.0% | |
| ATGAAGTGAGCAAGCATATA+TGG | + | chr1_3:25748311-25748330 | Msa0111650:intron | 35.0% | |
| GGCTTCTAAACTTTAACCTT+AGG | + | chr1_3:25748442-25748461 | Msa0111650:intron | 35.0% | |
| GCTCAATTTCTTGTTCTTGT+AGG | + | chr1_3:25748547-25748566 | Msa0111650:intron | 35.0% | |
| AAGAGTCTGAAGAGACAATA+AGG | - | chr1_3:25748676-25748695 | Msa0111670:intron | 35.0% | |
| AGAGTCTGAAGAGACAATAA+GGG | - | chr1_3:25748677-25748696 | Msa0111670:intron | 35.0% | |
| AATAAGGGGAAAACAGATTG+AGG | - | chr1_3:25748692-25748711 | Msa0111670:intron | 35.0% | |
| CAAGAGAATCTAAGTGTACA+GGG | + | chr1_3:25748899-25748918 | Msa0111650:intron | 35.0% | |
| TCAAGAGAATCTAAGTGTAC+AGG | + | chr1_3:25748900-25748919 | Msa0111650:intron | 35.0% | |
| TATATACTGAGCTAAGTGGT+TGG | + | chr1_3:25748947-25748966 | Msa0111650:intron | 35.0% | |
| CCTAGTAAATAGGTTTGAAG+AGG | + | chr1_3:25749058-25749077 | Msa0111650:intron | 35.0% | |
| CCTCTTCAAACCTATTTACT+AGG | - | chr1_3:25749055-25749074 | Msa0111670:intron | 35.0% | |
| TTGTTCTTCTTATGTAGGGT+TGG | + | chr1_3:25749110-25749129 | Msa0111650:intron | 35.0% | |
| ! | CAGCTTGTTCTTCTTATGTA+GGG | + | chr1_3:25749114-25749133 | Msa0111650:intron | 35.0% |
| ! | TCAGCTTGTTCTTCTTATGT+AGG | + | chr1_3:25749115-25749134 | Msa0111650:intron | 35.0% |
| ATAAGAAGAACAAGCTGAGT+TGG | - | chr1_3:25749117-25749136 | Msa0111670:intron | 35.0% | |
| TTGAGAGTTCTATCAGAAGT+TGG | - | chr1_3:25749178-25749197 | Msa0111670:intron | 35.0% | |
| AGGTTTAGCAAAATGAAGAG+GGG | + | chr1_3:25749433-25749452 | Msa0111650:intron | 35.0% | |
| CAGGTTTAGCAAAATGAAGA+GGG | + | chr1_3:25749434-25749453 | Msa0111650:intron | 35.0% | |
| TCAGGTTTAGCAAAATGAAG+AGG | + | chr1_3:25749435-25749454 | Msa0111650:intron | 35.0% | |
| !! | AAGGTTTCAAGATTGGTTTC+AGG | + | chr1_3:25749453-25749472 | Msa0111650:intron | 35.0% |
| TGAAACCCAACTAGAAAACT+TGG | - | chr1_3:25749503-25749522 | Msa0111670:CDS | 35.0% | |
| !!! | TTGAGCCAAGTTTTCTAGTT+GGG | + | chr1_3:25749511-25749530 | Msa0111650:intron | 35.0% |
| !! | TTTGAGCCAAGTTTTCTAGT+TGG | + | chr1_3:25749512-25749531 | Msa0111650:intron | 35.0% |
| AGCCTCTGATGATAACAATA+TGG | - | chr1_3:25749539-25749558 | Msa0111670:CDS | 35.0% | |
| TGATGATAACAATATGGCCA+TGG | - | chr1_3:25749545-25749564 | Msa0111670:CDS | 35.0% | |
| ! | TCTGAAGTAGTTTCCCTTGA+TGG | + | chr1_3:25748094-25748113 | Msa0111650:intron | 40.0% |
| !!! | AGTGATCTCAGTTTTGACTC+TGG | - | chr1_3:25748169-25748188 | Msa0111670:CDS | 40.0% |
| !!! | GTGATCTCAGTTTTGACTCT+GGG | - | chr1_3:25748170-25748189 | Msa0111670:CDS | 40.0% |
| ! | ATAAGTTGAGGCTTGTCTGA+AGG | + | chr1_3:25748244-25748263 | Msa0111650:intron | 40.0% |
| GGACTTCCCACTAATATCAA+AGG | - | chr1_3:25748277-25748296 | Msa0111670:intron | 40.0% | |
| GGGTCTTCCTTTGATATTAG+TGG | + | chr1_3:25748287-25748306 | Msa0111650:intron | 40.0% | |
| AGTGAGCAAGCATATATGGA+GGG | + | chr1_3:25748307-25748326 | Msa0111650:intron | 40.0% | |
| AAGTGAGCAAGCATATATGG+AGG | + | chr1_3:25748308-25748327 | Msa0111650:intron | 40.0% | |
| TCTTGCTGACAGAAGTTGAA+GGG | + | chr1_3:25748582-25748601 | Msa0111650:intron | 40.0% | |
| TTCTTGCTGACAGAAGTTGA+AGG | + | chr1_3:25748583-25748602 | Msa0111650:intron | 40.0% | |
| GAGTCTGAAGAGACAATAAG+GGG | - | chr1_3:25748678-25748697 | Msa0111670:intron | 40.0% | |
| AAGGTGACACAGGAGATAAA+AGG | - | chr1_3:25748732-25748751 | Msa0111670:intron | 40.0% | |
| AGGTGACACAGGAGATAAAA+GGG | - | chr1_3:25748733-25748752 | Msa0111670:intron | 40.0% | |
| AGAAGAGAGTTCCAAGATCT+TGG | - | chr1_3:25748764-25748783 | Msa0111670:intron | 40.0% | |
| AGAATCTAAGTGTACAGGGT+TGG | + | chr1_3:25748895-25748914 | Msa0111650:intron | 40.0% | |
| ! | CTAAGTGGTTGGTTATCTGT+AGG | + | chr1_3:25748936-25748955 | Msa0111650:intron | 40.0% |
| TTGAGGTTTGGGTGATAGTA+TGG | + | chr1_3:25748993-25749012 | Msa0111650:intron | 40.0% | |
| TCTAATACAGGGTCAGTTTG+AGG | + | chr1_3:25749010-25749029 | Msa0111650:intron | 40.0% | |
| TCAAACTGACCCTGTATTAG+AGG | - | chr1_3:25749009-25749028 | Msa0111670:intron | 40.0% | |
| CTTCCTCAACCTCTAATACA+GGG | + | chr1_3:25749021-25749040 | Msa0111650:intron | 40.0% | |
| ACTTCCTCAACCTCTAATAC+AGG | + | chr1_3:25749022-25749041 | Msa0111650:intron | 40.0% | |
| AGGCTTCTCACCTAGTAAAT+AGG | + | chr1_3:25749068-25749087 | Msa0111650:intron | 40.0% | |
| !! | ATGTAGGGTTGGTAATGCTA+GGG | + | chr1_3:25749099-25749118 | Msa0111650:intron | 40.0% |
| !! | TATGTAGGGTTGGTAATGCT+AGG | + | chr1_3:25749100-25749119 | Msa0111650:intron | 40.0% |
| ATAGGTGGTTGAGAAAAGAG+GGG | + | chr1_3:25749209-25749228 | Msa0111650:intron | 40.0% | |
| CATAGGTGGTTGAGAAAAGA+GGG | + | chr1_3:25749210-25749229 | Msa0111650:intron | 40.0% | |
| ACATAGGTGGTTGAGAAAAG+AGG | + | chr1_3:25749211-25749230 | Msa0111650:intron | 40.0% | |
| !! | ATGTTTGGTTTGGACATAGG+TGG | + | chr1_3:25749224-25749243 | Msa0111650:intron | 40.0% |
| !! | CTGATGTTTGGTTTGGACAT+AGG | + | chr1_3:25749227-25749246 | Msa0111650:intron | 40.0% |
| GGGATTTCTGATGTTTGGTT+TGG | + | chr1_3:25749234-25749253 | Msa0111650:intron | 40.0% | |
| GTATGGGGATTTCTGATGTT+TGG | + | chr1_3:25749239-25749258 | Msa0111650:intron | 40.0% | |
| !! | AACAACCTCTGAGACAACAA+TGG | - | chr1_3:25749275-25749294 | Msa0111670:intron | 40.0% |
| AACTTCCATTGTTGTCTCAG+AGG | + | chr1_3:25749283-25749302 | Msa0111650:intron | 40.0% | |
| ! | TAGGTTGAGGTGTTTGATGA+TGG | + | chr1_3:25749357-25749376 | Msa0111650:intron | 40.0% |
| GGCCATATTGTTATCATCAG+AGG | + | chr1_3:25749544-25749563 | Msa0111650:intron | 40.0% | |
| ! | TCTGAAGTAGTTTCCCTTGA+TGG | + | chr1_3:25748094-25748113 | Msa0111650:intron | 40.0% |
| !!! | AGTGATCTCAGTTTTGACTC+TGG | - | chr1_3:25748169-25748188 | Msa0111670:CDS | 40.0% |
| !!! | GTGATCTCAGTTTTGACTCT+GGG | - | chr1_3:25748170-25748189 | Msa0111670:CDS | 40.0% |
| ! | ATAAGTTGAGGCTTGTCTGA+AGG | + | chr1_3:25748244-25748263 | Msa0111650:intron | 40.0% |
| GGACTTCCCACTAATATCAA+AGG | - | chr1_3:25748277-25748296 | Msa0111670:intron | 40.0% | |
| GGGTCTTCCTTTGATATTAG+TGG | + | chr1_3:25748287-25748306 | Msa0111650:intron | 40.0% | |
| AGTGAGCAAGCATATATGGA+GGG | + | chr1_3:25748307-25748326 | Msa0111650:intron | 40.0% | |
| AAGTGAGCAAGCATATATGG+AGG | + | chr1_3:25748308-25748327 | Msa0111650:intron | 40.0% | |
| TCTTGCTGACAGAAGTTGAA+GGG | + | chr1_3:25748582-25748601 | Msa0111650:intron | 40.0% | |
| TTCTTGCTGACAGAAGTTGA+AGG | + | chr1_3:25748583-25748602 | Msa0111650:intron | 40.0% | |
| GAGTCTGAAGAGACAATAAG+GGG | - | chr1_3:25748678-25748697 | Msa0111670:intron | 40.0% | |
| AAGGTGACACAGGAGATAAA+AGG | - | chr1_3:25748732-25748751 | Msa0111670:intron | 40.0% | |
| AGGTGACACAGGAGATAAAA+GGG | - | chr1_3:25748733-25748752 | Msa0111670:intron | 40.0% | |
| AGAAGAGAGTTCCAAGATCT+TGG | - | chr1_3:25748764-25748783 | Msa0111670:intron | 40.0% | |
| AGAATCTAAGTGTACAGGGT+TGG | + | chr1_3:25748895-25748914 | Msa0111650:intron | 40.0% | |
| ! | CTAAGTGGTTGGTTATCTGT+AGG | + | chr1_3:25748936-25748955 | Msa0111650:intron | 40.0% |
| TTGAGGTTTGGGTGATAGTA+TGG | + | chr1_3:25748993-25749012 | Msa0111650:intron | 40.0% | |
| TCTAATACAGGGTCAGTTTG+AGG | + | chr1_3:25749010-25749029 | Msa0111650:intron | 40.0% | |
| TCAAACTGACCCTGTATTAG+AGG | - | chr1_3:25749009-25749028 | Msa0111670:intron | 40.0% | |
| CTTCCTCAACCTCTAATACA+GGG | + | chr1_3:25749021-25749040 | Msa0111650:intron | 40.0% | |
| ACTTCCTCAACCTCTAATAC+AGG | + | chr1_3:25749022-25749041 | Msa0111650:intron | 40.0% | |
| AGGCTTCTCACCTAGTAAAT+AGG | + | chr1_3:25749068-25749087 | Msa0111650:intron | 40.0% | |
| !! | ATGTAGGGTTGGTAATGCTA+GGG | + | chr1_3:25749099-25749118 | Msa0111650:intron | 40.0% |
| !! | TATGTAGGGTTGGTAATGCT+AGG | + | chr1_3:25749100-25749119 | Msa0111650:intron | 40.0% |
| ATAGGTGGTTGAGAAAAGAG+GGG | + | chr1_3:25749209-25749228 | Msa0111650:intron | 40.0% | |
| CATAGGTGGTTGAGAAAAGA+GGG | + | chr1_3:25749210-25749229 | Msa0111650:intron | 40.0% | |
| ACATAGGTGGTTGAGAAAAG+AGG | + | chr1_3:25749211-25749230 | Msa0111650:intron | 40.0% | |
| !! | ATGTTTGGTTTGGACATAGG+TGG | + | chr1_3:25749224-25749243 | Msa0111650:intron | 40.0% |
| !! | CTGATGTTTGGTTTGGACAT+AGG | + | chr1_3:25749227-25749246 | Msa0111650:intron | 40.0% |
| GGGATTTCTGATGTTTGGTT+TGG | + | chr1_3:25749234-25749253 | Msa0111650:intron | 40.0% | |
| GTATGGGGATTTCTGATGTT+TGG | + | chr1_3:25749239-25749258 | Msa0111650:intron | 40.0% | |
| !! | AACAACCTCTGAGACAACAA+TGG | - | chr1_3:25749275-25749294 | Msa0111670:intron | 40.0% |
| AACTTCCATTGTTGTCTCAG+AGG | + | chr1_3:25749283-25749302 | Msa0111650:intron | 40.0% | |
| ! | TAGGTTGAGGTGTTTGATGA+TGG | + | chr1_3:25749357-25749376 | Msa0111650:intron | 40.0% |
| GGCCATATTGTTATCATCAG+AGG | + | chr1_3:25749544-25749563 | Msa0111650:intron | 40.0% | |
| CTTCAGAAGCTACAACACGT+TGG | - | chr1_3:25748107-25748126 | Msa0111670:CDS | 45.0% | |
| GTAGCTTCTGATGAAGAGCT+TGG | - | chr1_3:25748131-25748150 | Msa0111670:CDS | 45.0% | |
| GGTGACCTCATAAGATCCTA+AGG | - | chr1_3:25748423-25748442 | Msa0111670:intron | 45.0% | |
| CTTGCTGACAGAAGTTGAAG+GGG | + | chr1_3:25748581-25748600 | Msa0111650:intron | 45.0% | |
| CACCTTAACAACCAACTCTC+TGG | + | chr1_3:25748718-25748737 | Msa0111650:intron | 45.0% | |
| GTTGGTTGTTAAGGTGACAC+AGG | - | chr1_3:25748722-25748741 | Msa0111670:intron | 45.0% | |
| CATGTTAGTGGCCAAGATCT+TGG | + | chr1_3:25748778-25748797 | Msa0111650:intron | 45.0% | |
| ATGGTACTTGAGAAGCTGCA+AGG | - | chr1_3:25748814-25748833 | Msa0111670:CDS | 45.0% | |
| TCTAAGTGTACAGGGTTGGA+AGG | + | chr1_3:25748891-25748910 | Msa0111650:intron | 45.0% | |
| ! | GGTTGGTTATCTGTAGGTGA+TGG | + | chr1_3:25748930-25748949 | Msa0111650:intron | 45.0% |
| ! | ACAGGGTCAGTTTGAGGTTT+GGG | + | chr1_3:25749004-25749023 | Msa0111650:intron | 45.0% |
| ! | TACAGGGTCAGTTTGAGGTT+TGG | + | chr1_3:25749005-25749024 | Msa0111650:intron | 45.0% |
| TGACCCTGTATTAGAGGTTG+AGG | - | chr1_3:25749015-25749034 | Msa0111670:intron | 45.0% | |
| GTAATGCTAGGGATGATCAG+AGG | + | chr1_3:25749088-25749107 | Msa0111650:intron | 45.0% | |
| TAGGTGGTTGAGAAAAGAGG+GGG | + | chr1_3:25749208-25749227 | Msa0111650:intron | 45.0% | |
| TGAAGAGGGGCAACTAGAAA+GGG | + | chr1_3:25749420-25749439 | Msa0111650:intron | 45.0% | |
| ATGAAGAGGGGCAACTAGAA+AGG | + | chr1_3:25749421-25749440 | Msa0111650:intron | 45.0% | |
| CTTCAGAAGCTACAACACGT+TGG | - | chr1_3:25748107-25748126 | Msa0111670:CDS | 45.0% | |
| GTAGCTTCTGATGAAGAGCT+TGG | - | chr1_3:25748131-25748150 | Msa0111670:CDS | 45.0% | |
| GGTGACCTCATAAGATCCTA+AGG | - | chr1_3:25748423-25748442 | Msa0111670:intron | 45.0% | |
| CTTGCTGACAGAAGTTGAAG+GGG | + | chr1_3:25748581-25748600 | Msa0111650:intron | 45.0% | |
| CACCTTAACAACCAACTCTC+TGG | + | chr1_3:25748718-25748737 | Msa0111650:intron | 45.0% | |
| GTTGGTTGTTAAGGTGACAC+AGG | - | chr1_3:25748722-25748741 | Msa0111670:intron | 45.0% | |
| CATGTTAGTGGCCAAGATCT+TGG | + | chr1_3:25748778-25748797 | Msa0111650:intron | 45.0% | |
| ATGGTACTTGAGAAGCTGCA+AGG | - | chr1_3:25748814-25748833 | Msa0111670:CDS | 45.0% | |
| TCTAAGTGTACAGGGTTGGA+AGG | + | chr1_3:25748891-25748910 | Msa0111650:intron | 45.0% | |
| ! | GGTTGGTTATCTGTAGGTGA+TGG | + | chr1_3:25748930-25748949 | Msa0111650:intron | 45.0% |
| ! | ACAGGGTCAGTTTGAGGTTT+GGG | + | chr1_3:25749004-25749023 | Msa0111650:intron | 45.0% |
| ! | TACAGGGTCAGTTTGAGGTT+TGG | + | chr1_3:25749005-25749024 | Msa0111650:intron | 45.0% |
| TGACCCTGTATTAGAGGTTG+AGG | - | chr1_3:25749015-25749034 | Msa0111670:intron | 45.0% | |
| GTAATGCTAGGGATGATCAG+AGG | + | chr1_3:25749088-25749107 | Msa0111650:intron | 45.0% | |
| TAGGTGGTTGAGAAAAGAGG+GGG | + | chr1_3:25749208-25749227 | Msa0111650:intron | 45.0% | |
| TGAAGAGGGGCAACTAGAAA+GGG | + | chr1_3:25749420-25749439 | Msa0111650:intron | 45.0% | |
| ATGAAGAGGGGCAACTAGAA+AGG | + | chr1_3:25749421-25749440 | Msa0111650:intron | 45.0% | |
| GAAGAGCTTGGAACTTGCAC+AGG | - | chr1_3:25748143-25748162 | Msa0111670:CDS | 50.0% | |
| CAAGGCTGTTCAGGATGATC+AGG | + | chr1_3:25748383-25748402 | Msa0111650:intron | 50.0% | |
| CTGATCATCCTGAACAGCCT+TGG | - | chr1_3:25748381-25748400 | Msa0111670:intron | 50.0% | |
| ACAGATTGAGGCCAGAGAGT+TGG | - | chr1_3:25748704-25748723 | Msa0111670:intron | 50.0% | |
| ! | GGCCAGAGAGTTGGTTGTTA+AGG | - | chr1_3:25748713-25748732 | Msa0111670:intron | 50.0% |
| GAAGAGCTTGGAACTTGCAC+AGG | - | chr1_3:25748143-25748162 | Msa0111670:CDS | 50.0% | |
| CAAGGCTGTTCAGGATGATC+AGG | + | chr1_3:25748383-25748402 | Msa0111650:intron | 50.0% | |
| CTGATCATCCTGAACAGCCT+TGG | - | chr1_3:25748381-25748400 | Msa0111670:intron | 50.0% | |
| ACAGATTGAGGCCAGAGAGT+TGG | - | chr1_3:25748704-25748723 | Msa0111670:intron | 50.0% | |
| ! | GGCCAGAGAGTTGGTTGTTA+AGG | - | chr1_3:25748713-25748732 | Msa0111670:intron | 50.0% |
| ! | GTTGGCTTCCAAGGCTGTTC+AGG | + | chr1_3:25748392-25748411 | Msa0111650:intron | 55.0% |
| GAACAGCCTTGGAAGCCAAC+AGG | - | chr1_3:25748392-25748411 | Msa0111670:intron | 55.0% | |
| !! | CCTCTTCCTGTTGGCTTCCA+AGG | + | chr1_3:25748401-25748420 | Msa0111650:intron | 55.0% |
| CCTTGGAAGCCAACAGGAAG+AGG | - | chr1_3:25748398-25748417 | Msa0111670:intron | 55.0% | |
| GGAAGCCAACAGGAAGAGGA+AGG | - | chr1_3:25748402-25748421 | Msa0111670:intron | 55.0% | |
| GGTCACCTTCCTCTTCCTGT+TGG | + | chr1_3:25748410-25748429 | Msa0111650:intron | 55.0% | |
| GAGGGGCAACTAGAAAGGGT+TGG | + | chr1_3:25749416-25749435 | Msa0111650:intron | 55.0% | |
| ! | GTTGGCTTCCAAGGCTGTTC+AGG | + | chr1_3:25748392-25748411 | Msa0111650:intron | 55.0% |
| GAACAGCCTTGGAAGCCAAC+AGG | - | chr1_3:25748392-25748411 | Msa0111670:intron | 55.0% | |
| !! | CCTCTTCCTGTTGGCTTCCA+AGG | + | chr1_3:25748401-25748420 | Msa0111650:intron | 55.0% |
| CCTTGGAAGCCAACAGGAAG+AGG | - | chr1_3:25748398-25748417 | Msa0111670:intron | 55.0% | |
| GGAAGCCAACAGGAAGAGGA+AGG | - | chr1_3:25748402-25748421 | Msa0111670:intron | 55.0% | |
| GGTCACCTTCCTCTTCCTGT+TGG | + | chr1_3:25748410-25748429 | Msa0111650:intron | 55.0% | |
| GAGGGGCAACTAGAAAGGGT+TGG | + | chr1_3:25749416-25749435 | Msa0111650:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 25748035 | 25749578 | 25748035 | ID=Msa0111670;Name=Msa0111670 |
| chr1_3 | mRNA | 25748035 | 25749578 | 25748035 | ID=Msa0111670-mRNA-1;Parent=Msa0111670;Name=Msa0111670-mRNA-1;_AED=0.49;_eAED=0.51;_QI=0|0|0|0.75|1|1|4|0|206 |
| chr1_3 | exon | 25749393 | 25749578 | 25749393 | ID=Msa0111670-mRNA-1:exon:8742;Parent=Msa0111670-mRNA-1 |
| chr1_3 | exon | 25749190 | 25749266 | 25749190 | ID=Msa0111670-mRNA-1:exon:8741;Parent=Msa0111670-mRNA-1 |
| chr1_3 | exon | 25748797 | 25748978 | 25748797 | ID=Msa0111670-mRNA-1:exon:8740;Parent=Msa0111670-mRNA-1 |
| chr1_3 | exon | 25748035 | 25748210 | 25748035 | ID=Msa0111670-mRNA-1:exon:8739;Parent=Msa0111670-mRNA-1 |
| chr1_3 | CDS | 25749393 | 25749578 | 25749393 | ID=Msa0111670-mRNA-1:cds;Parent=Msa0111670-mRNA-1 |
| chr1_3 | CDS | 25749190 | 25749266 | 25749190 | ID=Msa0111670-mRNA-1:cds;Parent=Msa0111670-mRNA-1 |
| chr1_3 | CDS | 25748797 | 25748978 | 25748797 | ID=Msa0111670-mRNA-1:cds;Parent=Msa0111670-mRNA-1 |
| chr1_3 | CDS | 25748035 | 25748210 | 25748035 | ID=Msa0111670-mRNA-1:cds;Parent=Msa0111670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
