Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112940 | XP_039690067.1 | 60.502 | 438 | 56 | 7 | 360 | 713 | 1 | 405 | 1.14e-156 | 469 |
| Msa0112940 | XP_039690067.1 | 81.024 | 332 | 56 | 3 | 26 | 350 | 11 | 342 | 9.29e-178 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112940 | A0A072VFJ7 | 60.502 | 438 | 56 | 7 | 360 | 713 | 1 | 405 | 5.43e-157 | 469 |
| Msa0112940 | A0A072VFJ7 | 81.024 | 332 | 56 | 3 | 26 | 350 | 11 | 342 | 4.44e-178 | 523 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0112940 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0067900 | Msa0112940 | 0.824561 | 7.550800e-54 | -8.615850e-47 |
| Msa0112940 | Msa1415640 | 0.800218 | 1.597417e-48 | -8.615850e-47 |
| Msa0112940 | Msa1443850 | 0.806212 | 9.177695e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112940 | MtrunA17_Chr1g0163201 | 80.495 | 323 | 56 | 3 | 35 | 350 | 18 | 340 | 1.83e-175 | 507 |
| Msa0112940 | MtrunA17_Chr1g0163201 | 59.427 | 419 | 53 | 7 | 379 | 713 | 18 | 403 | 1.61e-147 | 436 |
| Msa0112940 | MtrunA17_Chr1g0163181 | 61.905 | 441 | 72 | 6 | 360 | 709 | 1 | 436 | 2.04e-172 | 501 |
| Msa0112940 | MtrunA17_Chr1g0163181 | 69.106 | 369 | 68 | 5 | 26 | 350 | 11 | 377 | 3.65e-164 | 479 |
| Msa0112940 | MtrunA17_Chr1g0163111 | 66.016 | 256 | 47 | 4 | 463 | 704 | 1 | 230 | 1.15e-102 | 313 |
| Msa0112940 | MtrunA17_Chr1g0163111 | 65.241 | 187 | 37 | 4 | 181 | 350 | 1 | 176 | 7.35e-72 | 233 |
| Msa0112940 | MtrunA17_Chr1g0163251 | 50.882 | 340 | 123 | 7 | 26 | 341 | 11 | 330 | 5.03e-95 | 300 |
| Msa0112940 | MtrunA17_Chr1g0163251 | 39.153 | 378 | 148 | 9 | 360 | 659 | 1 | 374 | 4.34e-66 | 223 |
| Msa0112940 | MtrunA17_Chr1g0163151 | 60.392 | 255 | 54 | 2 | 463 | 703 | 1 | 222 | 4.54e-94 | 291 |
| Msa0112940 | MtrunA17_Chr1g0163151 | 70.760 | 171 | 47 | 2 | 181 | 350 | 1 | 169 | 1.17e-75 | 243 |
| Msa0112940 | MtrunA17_Chr1g0163231 | 47.292 | 277 | 124 | 6 | 29 | 297 | 18 | 280 | 3.46e-71 | 234 |
| Msa0112940 | MtrunA17_Chr1g0163231 | 35.017 | 297 | 129 | 8 | 360 | 594 | 1 | 295 | 1.18e-42 | 156 |
| Msa0112940 | MtrunA17_Chr1g0163261 | 43.902 | 287 | 141 | 3 | 29 | 306 | 18 | 293 | 1.62e-70 | 232 |
| Msa0112940 | MtrunA17_Chr1g0163261 | 34.130 | 293 | 127 | 5 | 360 | 586 | 1 | 293 | 7.53e-44 | 160 |
| Msa0112940 | MtrunA17_Chr1g0171611 | 46.886 | 273 | 119 | 6 | 29 | 297 | 18 | 268 | 2.50e-67 | 223 |
| Msa0112940 | MtrunA17_Chr1g0171611 | 33.955 | 268 | 127 | 5 | 360 | 577 | 1 | 268 | 1.45e-39 | 147 |
| Msa0112940 | MtrunA17_Chr1g0163191 | 77.500 | 160 | 35 | 1 | 16 | 175 | 1 | 159 | 2.49e-66 | 216 |
| Msa0112940 | MtrunA17_Chr1g0163191 | 50.318 | 157 | 33 | 3 | 360 | 474 | 1 | 154 | 1.45e-32 | 123 |
| Msa0112940 | MtrunA17_Chr1g0163241 | 67.114 | 149 | 36 | 3 | 25 | 172 | 12 | 148 | 2.00e-53 | 181 |
| Msa0112940 | MtrunA17_Chr1g0163241 | 38.636 | 132 | 33 | 3 | 359 | 448 | 6 | 131 | 1.23e-16 | 78.2 |
| Msa0112940 | MtrunA17_Chr1g0163131 | 33.448 | 290 | 160 | 11 | 29 | 295 | 27 | 306 | 5.14e-33 | 129 |
| Msa0112940 | MtrunA17_Chr1g0163131 | 33.962 | 159 | 83 | 6 | 567 | 704 | 151 | 308 | 1.18e-12 | 69.7 |
| Msa0112940 | MtrunA17_Chr1g0163131 | 65.000 | 40 | 14 | 0 | 373 | 412 | 27 | 66 | 3.72e-11 | 65.1 |
| Msa0112940 | MtrunA17_Chr1g0162151 | 34.426 | 244 | 117 | 4 | 463 | 701 | 1 | 206 | 4.16e-32 | 124 |
| Msa0112940 | MtrunA17_Chr1g0162151 | 41.538 | 130 | 71 | 3 | 181 | 306 | 1 | 129 | 1.03e-23 | 100 |
| Msa0112940 | MtrunA17_Chr7g0233521 | 32.593 | 270 | 165 | 7 | 36 | 296 | 2 | 263 | 3.82e-31 | 123 |
| Msa0112940 | MtrunA17_Chr6g0476171 | 34.524 | 252 | 107 | 9 | 472 | 701 | 29 | 244 | 6.92e-31 | 121 |
| Msa0112940 | MtrunA17_Chr6g0476171 | 39.062 | 128 | 75 | 3 | 197 | 321 | 34 | 161 | 7.89e-19 | 86.7 |
| Msa0112940 | MtrunA17_Chr1g0163101 | 44.000 | 150 | 65 | 4 | 29 | 174 | 26 | 160 | 6.58e-30 | 116 |
| Msa0112940 | MtrunA17_Chr1g0163101 | 60.465 | 43 | 17 | 0 | 373 | 415 | 26 | 68 | 2.97e-11 | 63.2 |
| Msa0112940 | MtrunA17_Chr1g0163091 | 44.030 | 134 | 66 | 4 | 463 | 589 | 1 | 132 | 1.68e-29 | 114 |
| Msa0112940 | MtrunA17_Chr1g0163091 | 39.860 | 143 | 82 | 2 | 181 | 320 | 1 | 142 | 3.58e-27 | 108 |
| Msa0112940 | MtrunA17_Chr3g0131891 | 32.509 | 283 | 169 | 8 | 29 | 296 | 28 | 303 | 1.92e-29 | 119 |
| Msa0112940 | MtrunA17_Chr8g0390841 | 28.428 | 299 | 172 | 10 | 29 | 298 | 48 | 333 | 5.62e-29 | 121 |
| Msa0112940 | MtrunA17_Chr8g0390841 | 32.877 | 146 | 85 | 5 | 436 | 580 | 202 | 335 | 1.87e-12 | 70.5 |
| Msa0112940 | MtrunA17_Chr7g0233561 | 29.966 | 297 | 174 | 7 | 34 | 304 | 32 | 320 | 9.51e-29 | 117 |
| Msa0112940 | MtrunA17_Chr7g0233541 | 31.488 | 289 | 160 | 10 | 36 | 296 | 2 | 280 | 1.08e-28 | 116 |
| Msa0112940 | MtrunA17_Chr1g0208771 | 28.322 | 286 | 176 | 8 | 35 | 297 | 12 | 291 | 1.08e-28 | 120 |
| Msa0112940 | MtrunA17_Chr1g0208771 | 25.080 | 311 | 174 | 11 | 436 | 701 | 160 | 456 | 1.76e-13 | 73.6 |
| Msa0112940 | MtrunA17_Chr7g0233531 | 32.222 | 270 | 166 | 7 | 36 | 296 | 2 | 263 | 1.06e-25 | 107 |
| Msa0112940 | MtrunA17_Chr1g0162161 | 40.288 | 139 | 74 | 3 | 36 | 174 | 4 | 133 | 2.05e-25 | 103 |
| Msa0112940 | MtrunA17_Chr1g0163121 | 48.148 | 108 | 54 | 2 | 34 | 141 | 9 | 114 | 2.51e-25 | 102 |
| Msa0112940 | MtrunA17_Chr6g0476181 | 42.969 | 128 | 61 | 4 | 36 | 162 | 2 | 118 | 3.83e-23 | 96.7 |
| Msa0112940 | MtrunA17_Chr3g0103171 | 27.599 | 279 | 164 | 8 | 35 | 294 | 5 | 264 | 4.01e-23 | 99.8 |
| Msa0112940 | MtrunA17_Chr1g0163081 | 39.344 | 122 | 60 | 2 | 36 | 157 | 6 | 113 | 1.48e-22 | 94.4 |
| Msa0112940 | MtrunA17_Chr3g0103181 | 26.531 | 294 | 162 | 12 | 26 | 294 | 14 | 278 | 1.89e-21 | 95.1 |
| Msa0112940 | MtrunA17_Chr1g0163071 | 25.329 | 304 | 176 | 7 | 36 | 301 | 2 | 292 | 2.83e-21 | 95.1 |
| Msa0112940 | MtrunA17_Chr4g0067431 | 27.368 | 285 | 177 | 9 | 25 | 282 | 16 | 297 | 5.31e-20 | 91.7 |
| Msa0112940 | MtrunA17_Chr1g0163141 | 39.259 | 135 | 77 | 2 | 32 | 166 | 7 | 136 | 1.45e-19 | 87.0 |
| Msa0112940 | MtrunA17_Chr5g0419201 | 32.919 | 161 | 100 | 3 | 29 | 186 | 25 | 180 | 2.05e-19 | 87.0 |
| Msa0112940 | MtrunA17_Chr1g0163221 | 28.425 | 292 | 192 | 10 | 29 | 310 | 20 | 304 | 9.14e-19 | 88.6 |
| Msa0112940 | MtrunA17_Chr7g0233571 | 30.374 | 214 | 127 | 7 | 20 | 213 | 6 | 217 | 1.28e-18 | 85.5 |
| Msa0112940 | MtrunA17_Chr1g0163161 | 43.158 | 95 | 52 | 2 | 48 | 142 | 1 | 93 | 6.87e-18 | 80.9 |
| Msa0112940 | MtrunA17_Chr3g0103191 | 26.872 | 227 | 131 | 8 | 16 | 222 | 1 | 212 | 3.92e-17 | 81.6 |
| Msa0112940 | MtrunA17_Chr3g0103151 | 34.746 | 118 | 71 | 3 | 25 | 138 | 13 | 128 | 1.55e-15 | 74.7 |
| Msa0112940 | MtrunA17_Chr5g0429931 | 23.881 | 268 | 165 | 8 | 35 | 297 | 10 | 243 | 4.83e-13 | 69.7 |
| Msa0112940 | MtrunA17_Chr6g0467351 | 31.532 | 111 | 73 | 2 | 28 | 135 | 23 | 133 | 1.15e-11 | 65.5 |
| Msa0112940 | MtrunA17_Chr1g0154161 | 23.828 | 256 | 190 | 4 | 32 | 283 | 42 | 296 | 1.34e-11 | 66.6 |
| Msa0112940 | MtrunA17_Chr3g0077461 | 27.612 | 134 | 95 | 1 | 29 | 160 | 246 | 379 | 3.96e-11 | 65.9 |
| Msa0112940 | MtrunA17_Chr4g0033961 | 30.769 | 169 | 103 | 4 | 29 | 193 | 15 | 173 | 4.11e-11 | 65.9 |
| Msa0112940 | MtrunA17_Chr5g0419211 | 31.373 | 102 | 69 | 1 | 497 | 597 | 10 | 111 | 5.87e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112940 | AT3G18990.2 | 22.985 | 335 | 184 | 7 | 29 | 299 | 15 | 339 | 5.72e-16 | 80.9 |
| Msa0112940 | AT3G18990.1 | 23.193 | 332 | 181 | 7 | 29 | 296 | 15 | 336 | 1.06e-15 | 79.7 |
Find 153 sgRNAs with CRISPR-Local
Find 490 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1_3:+28630499 | None:intergenic |
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1_3:+28634805 | None:intergenic |
| CTTTCGGATTGGGTCGTTTC+CGG | 0.165945 | 1_3:+28633807 | None:intergenic |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.200041 | 1_3:-28634720 | Msa0112940:CDS |
| CAAGCTCAAAGGACAATAAA+AGG | 0.217300 | 1_3:-28634480 | Msa0112940:CDS |
| TATTTCTCCACATATTTCTT+AGG | 0.222742 | 1_3:+28630549 | None:intergenic |
| AAATATTGTGGAATTGAAAA+TGG | 0.233869 | 1_3:-28628766 | Msa0112940:CDS |
| CTTTGCGAATGGTTCGTTTC+CGG | 0.252300 | 1_3:+28629308 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1_3:-28633310 | Msa0112940:CDS |
| TAGAATACAATGCTTATAAA+TGG | 0.258736 | 1_3:+28627504 | None:intergenic |
| GCATAAAACATTCAAGGTTT+TGG | 0.259758 | 1_3:-28628936 | Msa0112940:CDS |
| TGGAGAGAAATGGTGATATT+TGG | 0.267670 | 1_3:-28634764 | Msa0112940:CDS |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1_3:-28629509 | Msa0112940:CDS |
| TATTTCTCCACATATATCTT+AGG | 0.281171 | 1_3:+28634855 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.283749 | 1_3:-28630545 | Msa0112940:CDS |
| GAAGCATACATTCAAGGTTT+TGG | 0.302239 | 1_3:-28633480 | Msa0112940:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1_3:+28630507 | None:intergenic |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1_3:+28634813 | None:intergenic |
| TTCATCAACAGATTTGATAT+TGG | 0.305884 | 1_3:+28630309 | None:intergenic |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1_3:-28629648 | Msa0112940:intron |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1_3:-28634147 | Msa0112940:intron |
| CATGGAACAACGACCCTAAA+AGG | 0.309083 | 1_3:+28636572 | None:intergenic |
| AATGCTTATAAATGGATTCT+TGG | 0.310444 | 1_3:+28627512 | None:intergenic |
| TTAAAGGGACTGCAACAATA+AGG | 0.310666 | 1_3:-28634008 | Msa0112940:CDS |
| CATTAACAGCTTCAGATGTT+AGG | 0.318603 | 1_3:+28629705 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1_3:+28629339 | None:intergenic |
| TCCTCTCATCAATCAACTTA+AGG | 0.325864 | 1_3:+28627588 | None:intergenic |
| AGATATATGTGGAGAAATAT+TGG | 0.326941 | 1_3:-28634851 | Msa0112940:CDS |
| CTTGGAGAACAAACAGCTAA+TGG | 0.342183 | 1_3:+28627530 | None:intergenic |
| CTAGTAATTTCTTTCGGATT+GGG | 0.342779 | 1_3:+28633797 | None:intergenic |
| GTGTTTGATGTTTCAATTGC+AGG | 0.344942 | 1_3:-28627560 | Msa0112940:CDS |
| ACATTGGAGGAACGTCTTCT+AGG | 0.346380 | 1_3:-28629120 | Msa0112940:CDS |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1_3:+28630508 | None:intergenic |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1_3:+28634814 | None:intergenic |
| GAGGTGGTTGGAAAATATTC+AGG | 0.364157 | 1_3:-28633918 | Msa0112940:CDS |
| TAAAACCTAGTAATTTCTTT+CGG | 0.364235 | 1_3:+28633791 | None:intergenic |
| ACATGATTTCAGAAAGTATT+GGG | 0.371386 | 1_3:+28630757 | None:intergenic |
| CGGAAACTGTAGACGATGAT+TGG | 0.371551 | 1_3:+28636470 | None:intergenic |
| CCTAGTAATTTCTTTCGGAT+TGG | 0.373001 | 1_3:+28633796 | None:intergenic |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1_3:-28629508 | Msa0112940:CDS |
| AGCGTTGCATCTCTAATCAT+TGG | 0.377647 | 1_3:+28636431 | None:intergenic |
| CCATTCGCAAAGAAATTACT+AGG | 0.386228 | 1_3:-28629297 | Msa0112940:intron |
| TAACAAAGAAAGATCTTGTA+TGG | 0.389809 | 1_3:-28633941 | Msa0112940:CDS |
| TGGTAAGAGTGTTGCAAAGA+AGG | 0.395122 | 1_3:-28629146 | Msa0112940:CDS |
| CCAATCCGAAAGAAATTACT+AGG | 0.396990 | 1_3:-28633796 | Msa0112940:intron |
| TACCGAATTGCCGCTGAGCT+TGG | 0.400116 | 1_3:+28636311 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1_3:+28634638 | None:intergenic |
| AATATTGTGGAATTGAAAAT+GGG | 0.408122 | 1_3:-28628765 | Msa0112940:CDS |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1_3:-28634007 | Msa0112940:CDS |
| TTTGATGAAGCATACATTCA+AGG | 0.419004 | 1_3:-28633486 | Msa0112940:CDS |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 1_3:+28630720 | None:intergenic |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1_3:-28629419 | Msa0112940:CDS |
| ACAGCTTCAGATTGTGCCAT+TGG | 0.421914 | 1_3:+28634209 | None:intergenic |
| GAAGTGAGTTTGAGGTATTA+TGG | 0.429201 | 1_3:-28633964 | Msa0112940:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1_3:-28627623 | Msa0112940:CDS |
| CGCTGAAGATAGACTTCAAT+CGG | 0.432138 | 1_3:-28636412 | Msa0112940:five_prime_UTR |
| GATGAAGCATAAAACATTCA+AGG | 0.432143 | 1_3:-28628942 | Msa0112940:CDS |
| GAGCTTGGCTGAACTGCAAT+CGG | 0.449915 | 1_3:+28636326 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1_3:-28633309 | Msa0112940:CDS |
| CAAAGTAGCAATGGTGAAGA+AGG | 0.457353 | 1_3:-28629738 | Msa0112940:CDS |
| CAGCTTCAGATTGTGCCATT+GGG | 0.460205 | 1_3:+28634210 | None:intergenic |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1_3:-28634243 | Msa0112940:CDS |
| TGTTCTCTTGAAAACTCAAA+TGG | 0.468009 | 1_3:+28634042 | None:intergenic |
| GATGACAAGGTTATAAGAAA+GGG | 0.472513 | 1_3:-28629177 | Msa0112940:intron |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_3:+28629676 | None:intergenic |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_3:+28634175 | None:intergenic |
| CGATGACAAGGTTATAAGAA+AGG | 0.476820 | 1_3:-28629178 | Msa0112940:intron |
| GAGGTGAGTTTGAGATATTA+TGG | 0.477793 | 1_3:-28629465 | Msa0112940:CDS |
| CCTAGTAATTTCTTTGCGAA+TGG | 0.482285 | 1_3:+28629297 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.488297 | 1_3:-28634690 | Msa0112940:CDS |
| AGCCAAGCTCAGCGGCAATT+CGG | 0.488549 | 1_3:-28636313 | Msa0112940:intron |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.489506 | 1_3:-28634591 | Msa0112940:CDS |
| GGAGTGTGGAAGTGAGTTTG+AGG | 0.490380 | 1_3:-28633972 | Msa0112940:CDS |
| TTGGAAAACGAGAGATCAAT+CGG | 0.494672 | 1_3:+28636450 | None:intergenic |
| CCAAAGGAGTTTATGAAAAG+AGG | 0.496159 | 1_3:-28633342 | Msa0112940:CDS |
| AACATGATTTCAGAAAGTAT+TGG | 0.496348 | 1_3:+28630756 | None:intergenic |
| CTCTTCATGACTTTCTTCTG+TGG | 0.498976 | 1_3:+28630231 | None:intergenic |
| TGTGGCTGCAGGTTCAGTAA+AGG | 0.501542 | 1_3:-28627662 | Msa0112940:intron |
| AAAAGATATCCATATTTGAA+AGG | 0.504206 | 1_3:+28634711 | None:intergenic |
| CCGAAGGAGTTTATGAAAAG+AGG | 0.504433 | 1_3:-28628798 | Msa0112940:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1_3:+28629677 | None:intergenic |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1_3:+28634176 | None:intergenic |
| AATATCAAATCTGTTGATGA+AGG | 0.508408 | 1_3:-28630307 | Msa0112940:CDS |
| AATGTTACTATTACTCGTGC+CGG | 0.509303 | 1_3:-28629327 | Msa0112940:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1_3:+28634581 | None:intergenic |
| TTTCAGAAAGTATTGGGCTA+AGG | 0.524450 | 1_3:+28630763 | None:intergenic |
| ATTGTCACTATTACTCGTGC+CGG | 0.525079 | 1_3:-28633826 | Msa0112940:CDS |
| TTTGGTGAAGAACACAGAAC+CGG | 0.529435 | 1_3:-28628918 | Msa0112940:intron |
| AAGCTCAAAGGACAATAAAA+GGG | 0.530769 | 1_3:-28634479 | Msa0112940:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1_3:-28628778 | Msa0112940:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1_3:-28633322 | Msa0112940:CDS |
| GGAAACTGTAGACGATGATT+GGG | 0.532931 | 1_3:+28636471 | None:intergenic |
| ATAGTGACAATGAATGAAAA+CGG | 0.533216 | 1_3:+28633838 | None:intergenic |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1_3:-28630504 | Msa0112940:CDS |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1_3:-28634810 | Msa0112940:CDS |
| AGCTGAAGACACAGAAGAAG+AGG | 0.546039 | 1_3:-28630284 | Msa0112940:CDS |
| GATCTTGTATGGGAGGTGGT+TGG | 0.547438 | 1_3:-28633930 | Msa0112940:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1_3:-28629494 | Msa0112940:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1_3:-28633993 | Msa0112940:CDS |
| AAAGTATAATTTGCAAGTTG+AGG | 0.553539 | 1_3:-28633893 | Msa0112940:CDS |
| TGTTCTCTTGAAAACTCACT+TGG | 0.555107 | 1_3:+28629543 | None:intergenic |
| CGAAGGAGGATGAGAATCGA+TGG | 0.556308 | 1_3:+28636495 | None:intergenic |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_3:-28629365 | Msa0112940:CDS |
| AAAGGGAAGAGAAAATTCTC+AGG | 0.557828 | 1_3:-28634462 | Msa0112940:intron |
| GTATTTGCAGTGTGTACCGA+AGG | 0.559027 | 1_3:-28628814 | Msa0112940:intron |
| TGAAAATGGGGAGGAAGTCA+TGG | 0.563749 | 1_3:-28633296 | Msa0112940:intron |
| AATGTGGTATGGGTGGTGGA+TGG | 0.565938 | 1_3:-28629431 | Msa0112940:CDS |
| GAAAGATCTTGTATGGGAGG+TGG | 0.571003 | 1_3:-28633934 | Msa0112940:CDS |
| GATGGAGAAGAAGAAGCTAA+AGG | 0.572538 | 1_3:+28636513 | None:intergenic |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1_3:-28633462 | Msa0112940:intron |
| AACGACACTGCCATGTCTGT+TGG | 0.574077 | 1_3:+28636352 | None:intergenic |
| GCTGCAGGTTCAGTAAAGGT+TGG | 0.575963 | 1_3:-28627658 | Msa0112940:intron |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1_3:-28629504 | Msa0112940:CDS |
| AACAAAGAAAGATCTTGTAT+GGG | 0.582045 | 1_3:-28633940 | Msa0112940:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.582904 | 1_3:-28634252 | Msa0112940:CDS |
| GAGGGTTCCTAAGATATATG+TGG | 0.586451 | 1_3:-28634862 | Msa0112940:CDS |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1_3:+28629643 | None:intergenic |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1_3:+28634142 | None:intergenic |
| GTAAATTTGAGATGATTCAA+CGG | 0.588165 | 1_3:-28633864 | Msa0112940:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1_3:-28634003 | Msa0112940:CDS |
| GTATTTGCAGAGTGCACCAA+AGG | 0.590998 | 1_3:-28633358 | Msa0112940:intron |
| GAGGGTTCCTAAGAAATATG+TGG | 0.594786 | 1_3:-28630556 | Msa0112940:CDS |
| AAAGAAAGATCTTGTATGGG+AGG | 0.599987 | 1_3:-28633937 | Msa0112940:CDS |
| TCCTTAAGTTGATTGATGAG+AGG | 0.601248 | 1_3:-28627589 | Msa0112940:CDS |
| AGGTAGTAACAAAGTAGCAA+TGG | 0.603454 | 1_3:-28629747 | Msa0112940:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1_3:-28633986 | Msa0112940:CDS |
| AGGTGGTTGGAAAATATTCA+GGG | 0.606836 | 1_3:-28633917 | Msa0112940:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1_3:-28629659 | Msa0112940:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1_3:-28634158 | Msa0112940:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.612079 | 1_3:-28628752 | Msa0112940:intron |
| ATTCATGAAAGAATGCAAAG+TGG | 0.613826 | 1_3:-28627630 | Msa0112940:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.615653 | 1_3:-28629487 | Msa0112940:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_3:-28630540 | Msa0112940:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_3:-28634846 | Msa0112940:CDS |
| GTTGCAAAGAAGGAAGACAT+TGG | 0.622416 | 1_3:-28629136 | Msa0112940:CDS |
| AAATGTCAAAGCAAGCTCAA+AGG | 0.625671 | 1_3:-28634491 | Msa0112940:CDS |
| AAGTGATGAAGAGAGTGATG+AGG | 0.629681 | 1_3:-28634517 | Msa0112940:CDS |
| GTAGACGATGATTGGGACGA+AGG | 0.630625 | 1_3:+28636478 | None:intergenic |
| AGAGAAACGAGAGAGCGCCA+TGG | 0.630643 | 1_3:+28636554 | None:intergenic |
| GCAAAGAAGGAAGACATTGG+AGG | 0.630671 | 1_3:-28629133 | Msa0112940:CDS |
| TTGTGGAGTTGAAAATGGGG+AGG | 0.632079 | 1_3:-28633305 | Msa0112940:CDS |
| ATATTGTGGAATTGAAAATG+GGG | 0.634099 | 1_3:-28628764 | Msa0112940:CDS |
| ATGACAAGGTTATAAGAAAG+GGG | 0.638628 | 1_3:-28629176 | Msa0112940:intron |
| GACGATGATTGGGACGAAGG+AGG | 0.640284 | 1_3:+28636481 | None:intergenic |
| GCTGAAGACACAGAAGAAGA+GGG | 0.643743 | 1_3:-28630283 | Msa0112940:CDS |
| CTTTACAGGTAGTAACAAAG+TGG | 0.648804 | 1_3:-28634258 | Msa0112940:intron |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.650568 | 1_3:-28629484 | Msa0112940:CDS |
| TGTGAAGAGAAGACTGAGTG+TGG | 0.661343 | 1_3:+28636621 | None:intergenic |
| TCATCTTCATCCAACAGACA+TGG | 0.668320 | 1_3:-28636362 | Msa0112940:CDS |
| TGCAGTTCAGCCAAGCTCAG+CGG | 0.670925 | 1_3:-28636321 | Msa0112940:CDS |
| GAAGGCTAGAAAATACCCAA+TGG | 0.687317 | 1_3:-28634225 | Msa0112940:CDS |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1_3:-28633308 | Msa0112940:CDS |
| GGAACAACGACCCTAAAAGG+TGG | 0.697329 | 1_3:+28636575 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATATGTGATTTTTT+TGG | - | chr1_3:28629783-28629802 | Msa0112940:intron | 10.0% |
| !!! | TGTATGTTATAATTTTTTTA+TGG | - | chr1_3:28630404-28630423 | Msa0112940:intron | 10.0% |
| !! | TAAACATATAATATATAGTT+AGG | + | chr1_3:28630513-28630532 | None:intergenic | 10.0% |
| !!! | TTTTTTTATATAGTTTATGT+TGG | + | chr1_3:28632633-28632652 | None:intergenic | 10.0% |
| !!! | ATACTTCAATTATTTTTTAA+GGG | + | chr1_3:28632953-28632972 | None:intergenic | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1_3:28633813-28633832 | None:intergenic | 10.0% |
| !! | ATTAAAAATATCCAAATTAA+AGG | + | chr1_3:28635715-28635734 | None:intergenic | 10.0% |
| !!! | TTATATTTTCAATTATTTTC+AGG | - | chr1_3:28636186-28636205 | Msa0112940:intron | 10.0% |
| !! | TAATAAACAAATTCAAAAAC+TGG | - | chr1_3:28628013-28628032 | Msa0112940:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr1_3:28628325-28628344 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr1_3:28628326-28628345 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr1_3:28628391-28628410 | None:intergenic | 15.0% |
| !!! | AATGTTTATATTTGTGATTT+TGG | - | chr1_3:28628485-28628504 | Msa0112940:intron | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | + | chr1_3:28628868-28628887 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1_3:28629356-28629375 | Msa0112940:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1_3:28629508-28629527 | None:intergenic | 15.0% |
| !!! | TTATAATTTTTTTATGGACA+AGG | - | chr1_3:28630410-28630429 | Msa0112940:intron | 15.0% |
| !!! | TCAAATAACTCTAAAATTTT+TGG | - | chr1_3:28630567-28630586 | Msa0112940:intron | 15.0% |
| !!! | CAAATAACTCTAAAATTTTT+GGG | - | chr1_3:28630568-28630587 | Msa0112940:intron | 15.0% |
| !!! | AAAAATCTTACTTATTTTAC+TGG | + | chr1_3:28631312-28631331 | None:intergenic | 15.0% |
| !!! | ATTAAGTTCTGATTTAATTA+AGG | - | chr1_3:28631504-28631523 | Msa0112940:intron | 15.0% |
| !! | CAAATATATAAACTTCATTT+AGG | + | chr1_3:28631545-28631564 | None:intergenic | 15.0% |
| !!! | TGAATTATTTAATTTACACT+AGG | - | chr1_3:28632741-28632760 | Msa0112940:intron | 15.0% |
| !!! | GATACTTCAATTATTTTTTA+AGG | + | chr1_3:28632954-28632973 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1_3:28629356-28629375 | Msa0112940:CDS | 15.0% |
| !!! | ATATTGGTTTCAAAAAAATT+GGG | - | chr1_3:28633700-28633719 | Msa0112940:intron | 15.0% |
| !!! | AAAATATGCGATTTTTTTTT+TGG | - | chr1_3:28634249-28634268 | Msa0112940:CDS | 15.0% |
| !!! | TTTTATTTAATTAATCCTAC+CGG | + | chr1_3:28635247-28635266 | None:intergenic | 15.0% |
| !! | TGTATTGTAATTCTTCAATT+TGG | - | chr1_3:28627889-28627908 | Msa0112940:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr1_3:28628256-28628275 | None:intergenic | 20.0% |
| !! | GAAAGTGAAATATATTGTAT+TGG | + | chr1_3:28628367-28628386 | None:intergenic | 20.0% |
| !!! | TAATCTGCCATTTTTATATA+AGG | + | chr1_3:28628675-28628694 | None:intergenic | 20.0% |
| !! | TATATAAAAATGGCAGATTA+AGG | - | chr1_3:28628675-28628694 | Msa0112940:intron | 20.0% |
| !! | ATATAAAAATGGCAGATTAA+GGG | - | chr1_3:28628676-28628695 | Msa0112940:intron | 20.0% |
| !!! | TAAAGATACTTTTTGTAGTA+TGG | + | chr1_3:28628947-28628966 | None:intergenic | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1_3:28629332-28629351 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1_3:28629333-28629352 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1_3:28629333-28629352 | Msa0112940:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1_3:28629355-28629374 | Msa0112940:CDS | 20.0% |
| !!! | ATATTTGGTTTCAAAAAAAC+TGG | - | chr1_3:28629394-28629413 | Msa0112940:CDS | 20.0% |
| !!! | TATTTGGTTTCAAAAAAACT+GGG | - | chr1_3:28629395-28629414 | Msa0112940:CDS | 20.0% |
| !! | AAAAGATATCCATATTTGAA+AGG | + | chr1_3:28629435-28629454 | None:intergenic | 20.0% |
| !!! | CTTTTAACTTTCAAATTCAT+TGG | - | chr1_3:28629450-28629469 | Msa0112940:CDS | 20.0% |
| !!! | TTCAAAAACTGATTTGATAT+TGG | + | chr1_3:28629532-28629551 | None:intergenic | 20.0% |
| !!! | AATATCAAATCAGTTTTTGA+AGG | - | chr1_3:28629531-28629550 | Msa0112940:CDS | 20.0% |
| !!! | AAATATGTGATTTTTTTGGA+AGG | - | chr1_3:28629787-28629806 | Msa0112940:intron | 20.0% |
| !! | AAATAATCTCTAAACTTTAC+AGG | - | chr1_3:28629871-28629890 | Msa0112940:intron | 20.0% |
| !!! | AACACTTGAAAGATTTTAAA+GGG | - | chr1_3:28630120-28630139 | Msa0112940:intron | 20.0% |
| !! | TAAAACCTAGTAATTTCTTT+CGG | + | chr1_3:28630355-28630374 | None:intergenic | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1_3:28630703-28630722 | None:intergenic | 20.0% |
| !!! | AATTATTATGAGAGTATTCT+TGG | - | chr1_3:28630882-28630901 | Msa0112940:intron | 20.0% |
| !! | TACAATGCTTAAAATTGAAA+GGG | + | chr1_3:28631088-28631107 | None:intergenic | 20.0% |
| !! | ATACAATGCTTAAAATTGAA+AGG | + | chr1_3:28631089-28631108 | None:intergenic | 20.0% |
| !! | GGATTCATAGAAATATAATT+AGG | - | chr1_3:28631251-28631270 | Msa0112940:intron | 20.0% |
| !! | ATTTATGAATTTCTTAACCA+TGG | - | chr1_3:28631400-28631419 | Msa0112940:intron | 20.0% |
| !! | TTCTGATTTAATTAAGGATT+AGG | - | chr1_3:28631510-28631529 | Msa0112940:intron | 20.0% |
| !! | TACATAAATCATGAAAGAAA+TGG | + | chr1_3:28632045-28632064 | None:intergenic | 20.0% |
| !!! | GAAGAATAACTTTGTAATTT+TGG | - | chr1_3:28632501-28632520 | Msa0112940:intron | 20.0% |
| !!! | TCAATTATTTTTTAAGGGTA+AGG | + | chr1_3:28632948-28632967 | None:intergenic | 20.0% |
| !! | AATTGATTGCATTTCAATAA+AGG | - | chr1_3:28633080-28633099 | Msa0112940:intron | 20.0% |
| !! | ACAATGATACATAAACAATA+GGG | + | chr1_3:28633525-28633544 | None:intergenic | 20.0% |
| !! | AACAATGATACATAAACAAT+AGG | + | chr1_3:28633526-28633545 | None:intergenic | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1_3:28629332-28629351 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1_3:28629333-28629352 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1_3:28629333-28629352 | Msa0112940:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1_3:28629355-28629374 | Msa0112940:CDS | 20.0% |
| !!! | GATATTGGTTTCAAAAAAAT+TGG | - | chr1_3:28633699-28633718 | Msa0112940:intron | 20.0% |
| !! | TTAACTTTCAAATTCATTAG+TGG | - | chr1_3:28633758-28633777 | Msa0112940:intron | 20.0% |
| !!! | TATTTTAAGGTGAAGATATT+TGG | - | chr1_3:28633785-28633804 | Msa0112940:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | + | chr1_3:28634807-28634826 | None:intergenic | 20.0% |
| !! | AAATATTGTGGAATTGAAAA+TGG | - | chr1_3:28635377-28635396 | Msa0112940:intron | 20.0% |
| !! | AATATTGTGGAATTGAAAAT+GGG | - | chr1_3:28635378-28635397 | Msa0112940:intron | 20.0% |
| !!! | TATGAGAATGATCTTTTTTT+TGG | - | chr1_3:28635877-28635896 | Msa0112940:intron | 20.0% |
| !!! | TATTTTCAATTATTTTCAGG+AGG | - | chr1_3:28636189-28636208 | Msa0112940:intron | 20.0% |
| !!! | TATTCAAGTTTTGAAATAAG+AGG | - | chr1_3:28636353-28636372 | Msa0112940:CDS | 20.0% |
| !!! | ACTGTTTTTGAACTGATTTT+TGG | - | chr1_3:28627922-28627941 | Msa0112940:intron | 25.0% |
| !!! | CTGTTTTTGAACTGATTTTT+GGG | - | chr1_3:28627923-28627942 | Msa0112940:intron | 25.0% |
| ! | AATTCAAAAACTGGAAGAAT+AGG | - | chr1_3:28628022-28628041 | Msa0112940:intron | 25.0% |
| ! | GTTCAATGGATATTATAGTT+AGG | - | chr1_3:28628044-28628063 | Msa0112940:intron | 25.0% |
| !! | GGGAGTATATATATATATGT+TGG | + | chr1_3:28628214-28628233 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr1_3:28628257-28628276 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | + | chr1_3:28628278-28628297 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | + | chr1_3:28628279-28628298 | None:intergenic | 25.0% |
| ! | TTGTGATGATATACACAAAT+AGG | - | chr1_3:28628575-28628594 | Msa0112940:intron | 25.0% |
| !! | CTATTTCTTACATTGTAAGA+TGG | - | chr1_3:28628638-28628657 | Msa0112940:intron | 25.0% |
| ! | TTGGCTATATTAGATTTACA+AGG | + | chr1_3:28628762-28628781 | None:intergenic | 25.0% |
| !! | AATGTCATTTCAACATATTC+CGG | - | chr1_3:28629105-28629124 | Msa0112940:CDS | 25.0% |
| ! | AAGATTATCCTATGAAAATC+CGG | + | chr1_3:28629127-28629146 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATATCTT+AGG | + | chr1_3:28629291-28629310 | None:intergenic | 25.0% |
| ! | AGATATATGTGGAGAAATAT+TGG | - | chr1_3:28629292-28629311 | Msa0112940:intron | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1_3:28629359-28629378 | Msa0112940:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_3:28629453-28629472 | Msa0112940:CDS | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1_3:28629970-28629989 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1_3:28629971-28629990 | None:intergenic | 25.0% |
| ! | ATATCTACTAAACCATGATT+TGG | - | chr1_3:28630067-28630086 | Msa0112940:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+AGG | - | chr1_3:28630119-28630138 | Msa0112940:intron | 25.0% |
| ! | TAACAAAGAAAGATCTTGTA+TGG | - | chr1_3:28630202-28630221 | Msa0112940:intron | 25.0% |
| ! | AACAAAGAAAGATCTTGTAT+GGG | - | chr1_3:28630203-28630222 | Msa0112940:intron | 25.0% |
| !! | AAAGTATAATTTGCAAGTTG+AGG | - | chr1_3:28630250-28630269 | Msa0112940:CDS | 25.0% |
| !! | GTAAATTTGAGATGATTCAA+CGG | - | chr1_3:28630279-28630298 | Msa0112940:CDS | 25.0% |
| ! | ATAGTGACAATGAATGAAAA+CGG | + | chr1_3:28630308-28630327 | None:intergenic | 25.0% |
| ! | TAAAAAAAGAAACTGAATCC+TGG | + | chr1_3:28630482-28630501 | None:intergenic | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1_3:28630702-28630721 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1_3:28630833-28630852 | Msa0112940:intron | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1_3:28630834-28630853 | Msa0112940:intron | 25.0% |
| ! | ACCTTATGTAATTTACCTAT+TGG | - | chr1_3:28631149-28631168 | Msa0112940:intron | 25.0% |
| ! | TCCAATAGGTAAATTACATA+AGG | + | chr1_3:28631153-28631172 | None:intergenic | 25.0% |
| ! | GCATTCAATTAAAATCCAAT+AGG | + | chr1_3:28631167-28631186 | None:intergenic | 25.0% |
| ! | TGCATGAAAACTATATATGT+TGG | + | chr1_3:28631204-28631223 | None:intergenic | 25.0% |
| !! | TATAGTTATGTCTTGTTAAC+CGG | + | chr1_3:28631436-28631455 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGAACTGGATTT+TGG | - | chr1_3:28632119-28632138 | Msa0112940:intron | 25.0% |
| !!! | TTGTTTTTGAACTGGATTTT+GGG | - | chr1_3:28632120-28632139 | Msa0112940:intron | 25.0% |
| ! | TTGCTTACTAGTAAATGAAA+AGG | + | chr1_3:28632319-28632338 | None:intergenic | 25.0% |
| ! | TTTATTGCCGAAGAAATAAT+AGG | - | chr1_3:28632349-28632368 | Msa0112940:intron | 25.0% |
| !! | CATTGAACCTATTATTTCTT+CGG | + | chr1_3:28632359-28632378 | None:intergenic | 25.0% |
| ! | GTTCAATGGATATTATAGTT+AGG | - | chr1_3:28628044-28628063 | Msa0112940:intron | 25.0% |
| !! | ATTTAATTTACACTAGGACT+AGG | - | chr1_3:28632747-28632766 | Msa0112940:intron | 25.0% |
| ! | GAAAGCTCATTATTATAAAG+TGG | - | chr1_3:28632771-28632790 | Msa0112940:intron | 25.0% |
| ! | AGAAAACCTTTGAATTACTT+TGG | - | chr1_3:28632796-28632815 | Msa0112940:intron | 25.0% |
| !!! | TAAAGCAAAGTTACTTTTGT+AGG | + | chr1_3:28632976-28632995 | None:intergenic | 25.0% |
| ! | TCATTGAAAGGGAAAAAATT+GGG | + | chr1_3:28633048-28633067 | None:intergenic | 25.0% |
| ! | TTCATTGAAAGGGAAAAAAT+TGG | + | chr1_3:28633049-28633068 | None:intergenic | 25.0% |
| ! | ATTGAAATGCAATCAATTTG+AGG | + | chr1_3:28633078-28633097 | None:intergenic | 25.0% |
| ! | TTTGAGTGTTATAAAGTTGA+TGG | + | chr1_3:28633337-28633356 | None:intergenic | 25.0% |
| !!! | ACATGATTTCAGAAAGTATT+GGG | + | chr1_3:28633389-28633408 | None:intergenic | 25.0% |
| !! | AACATGATTTCAGAAAGTAT+TGG | + | chr1_3:28633390-28633409 | None:intergenic | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | + | chr1_3:28629127-28629146 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATTTCTT+AGG | + | chr1_3:28633597-28633616 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | - | chr1_3:28633598-28633617 | Msa0112940:intron | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1_3:28629359-28629378 | Msa0112940:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1_3:28633740-28633759 | None:intergenic | 25.0% |
| !!! | CATTAGTGGATCATATTTTA+AGG | - | chr1_3:28633772-28633791 | Msa0112940:intron | 25.0% |
| ! | TTCATCAACAGATTTGATAT+TGG | + | chr1_3:28633837-28633856 | None:intergenic | 25.0% |
| !! | AATATCAAATCTGTTGATGA+AGG | - | chr1_3:28633836-28633855 | Msa0112940:CDS | 25.0% |
| !! | GTGATTTTTCTCTCTTTTTT+TGG | - | chr1_3:28634056-28634075 | Msa0112940:intron | 25.0% |
| !!! | TCTCTTTTTTTGGTAGATTT+AGG | - | chr1_3:28634066-28634085 | Msa0112940:intron | 25.0% |
| !!! | TACTTTTAAGAGTTATGCAA+TGG | - | chr1_3:28634144-28634163 | Msa0112940:intron | 25.0% |
| !!! | TATGCGATTTTTTTTTTGGT+AGG | - | chr1_3:28634253-28634272 | Msa0112940:CDS | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | - | chr1_3:28634372-28634391 | Msa0112940:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1_3:28629970-28629989 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1_3:28629971-28629990 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1_3:28630119-28630138 | Msa0112940:intron | 25.0% |
| !! | CAAGAAAATTTTCTTTTGGA+CGG | + | chr1_3:28635051-28635070 | None:intergenic | 25.0% |
| !! | TCCAAAAGAAAATTTTCTTG+AGG | - | chr1_3:28635051-28635070 | Msa0112940:intron | 25.0% |
| !! | CCAAAAGAAAATTTTCTTGA+GGG | - | chr1_3:28635052-28635071 | Msa0112940:intron | 25.0% |
| ! | ATATTGTGGAATTGAAAATG+GGG | - | chr1_3:28635379-28635398 | Msa0112940:intron | 25.0% |
| ! | AATTATTATCAGAGTCTTTG+TGG | - | chr1_3:28635426-28635445 | Msa0112940:intron | 25.0% |
| ! | TGGAGAAAATTTATGAAAGA+AGG | - | chr1_3:28635468-28635487 | Msa0112940:intron | 25.0% |
| ! | GTGTTTAATGTTTCAATTGT+AGG | - | chr1_3:28635546-28635565 | Msa0112940:intron | 25.0% |
| ! | ATAAGAGATGAAACAGTTAT+TGG | + | chr1_3:28635578-28635597 | None:intergenic | 25.0% |
| ! | AGAATGACATGATTAAGAAA+TGG | - | chr1_3:28635807-28635826 | Msa0112940:intron | 25.0% |
| ! | ATGTGAAATATACAGTTGTT+TGG | - | chr1_3:28635938-28635957 | Msa0112940:intron | 25.0% |
| !!! | CTTTTAATTTTCGACAAAAG+TGG | + | chr1_3:28635973-28635992 | None:intergenic | 25.0% |
| !!! | TTAATCTGCCACTTTATATA+AGG | + | chr1_3:28636050-28636069 | None:intergenic | 25.0% |
| ! | AGTCAATACAAAATAACACT+AGG | + | chr1_3:28636316-28636335 | None:intergenic | 25.0% |
| ! | CTCATAGTAATTAACTTTCA+AGG | + | chr1_3:28636455-28636474 | None:intergenic | 25.0% |
| ! | TGATAGTGTTTCTCTATTGA+TGG | - | chr1_3:28627965-28627984 | Msa0112940:intron | 30.0% |
| AGTTGTGATGATTCACAAAT+AGG | - | chr1_3:28628177-28628196 | Msa0112940:intron | 30.0% | |
| ! | TCTGTGTGAAAATCTAAAGT+AGG | - | chr1_3:28628412-28628431 | Msa0112940:intron | 30.0% |
| CTAAAGTAGGTCAATTAAAC+CGG | - | chr1_3:28628425-28628444 | Msa0112940:intron | 30.0% | |
| TAAAGTAGGTCAATTAAACC+GGG | - | chr1_3:28628426-28628445 | Msa0112940:intron | 30.0% | |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | + | chr1_3:28628612-28628631 | None:intergenic | 30.0% |
| !!! | TTTTTATATAAGGTGCTGTC+TGG | + | chr1_3:28628665-28628684 | None:intergenic | 30.0% |
| GACAGCACCTTATATAAAAA+TGG | - | chr1_3:28628665-28628684 | Msa0112940:intron | 30.0% | |
| TAGTACAATTCAGTGAAAGT+TGG | + | chr1_3:28628781-28628800 | None:intergenic | 30.0% | |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | + | chr1_3:28628854-28628873 | None:intergenic | 30.0% |
| ! | AACATATTCCGGATTTTCAT+AGG | - | chr1_3:28629116-28629135 | Msa0112940:CDS | 30.0% |
| TCTGAATTTCTTTATTGCAG+AGG | - | chr1_3:28629262-28629281 | Msa0112940:intron | 30.0% | |
| CTGAATTTCTTTATTGCAGA+GGG | - | chr1_3:28629263-28629282 | Msa0112940:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1_3:28629297-28629316 | Msa0112940:intron | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1_3:28629351-28629370 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1_3:28629423-28629442 | Msa0112940:CDS | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_3:28629467-28629486 | Msa0112940:CDS | 30.0% |
| ! | CTTTCTTCATCTTCTTTTGT+GGG | + | chr1_3:28629609-28629628 | None:intergenic | 30.0% |
| ! | ACTTTCTTCATCTTCTTTTG+TGG | + | chr1_3:28629610-28629629 | None:intergenic | 30.0% |
| AAGCTCAAAGGACAATAAAA+GGG | - | chr1_3:28629664-28629683 | Msa0112940:CDS | 30.0% | |
| AGTTTAGGCTTGTAAATCTA+AGG | - | chr1_3:28629706-28629725 | Msa0112940:CDS | 30.0% | |
| TGTTCTCTTGAAAACTCAAA+TGG | + | chr1_3:28630104-28630123 | None:intergenic | 30.0% | |
| CTAGTAATTTCTTTCGGATT+GGG | + | chr1_3:28630349-28630368 | None:intergenic | 30.0% | |
| TATGGACAAGGTTATAAGAA+AGG | - | chr1_3:28630422-28630441 | Msa0112940:intron | 30.0% | |
| ATGGACAAGGTTATAAGAAA+GGG | - | chr1_3:28630423-28630442 | Msa0112940:intron | 30.0% | |
| TTTGATGAAGCATACATTCA+AGG | - | chr1_3:28630657-28630676 | Msa0112940:intron | 30.0% | |
| TTATGTAATTAATCCTACCG+GGG | + | chr1_3:28630701-28630720 | None:intergenic | 30.0% | |
| AGGATGTCATGAAAATATTG+TGG | - | chr1_3:28630821-28630840 | Msa0112940:intron | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1_3:28630835-28630854 | Msa0112940:intron | 30.0% | |
| ATTCATGAAAGAATGCAATG+TGG | - | chr1_3:28630932-28630951 | Msa0112940:intron | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | - | chr1_3:28631002-28631021 | Msa0112940:intron | 30.0% | |
| CTAGTTACTAGTACTTTCAT+GGG | + | chr1_3:28631034-28631053 | None:intergenic | 30.0% | |
| TCTAGTTACTAGTACTTTCA+TGG | + | chr1_3:28631035-28631054 | None:intergenic | 30.0% | |
| TATTGTGACCTCATATGAAA+TGG | - | chr1_3:28631116-28631135 | Msa0112940:intron | 30.0% | |
| ATTGATGAGCTGATCATAAT+AGG | - | chr1_3:28631230-28631249 | Msa0112940:intron | 30.0% | |
| AAAAGAGGATGAAGAAACTA+CGG | + | chr1_3:28631801-28631820 | None:intergenic | 30.0% | |
| TTTGAAAACGAGTGATCAAT+CGG | + | chr1_3:28631878-28631897 | None:intergenic | 30.0% | |
| TCAAATAAATAGAGCTGCAA+TGG | - | chr1_3:28631893-28631912 | Msa0112940:intron | 30.0% | |
| AAGAAATGGAAGAACAAAAG+AGG | + | chr1_3:28632031-28632050 | None:intergenic | 30.0% | |
| !!! | GATACTGTTTGTTTTTGAAC+TGG | - | chr1_3:28632112-28632131 | Msa0112940:intron | 30.0% |
| CGAAGAAATAATAGGTTCAA+TGG | - | chr1_3:28632357-28632376 | Msa0112940:intron | 30.0% | |
| AGTTGTGATGATTCACAAAT+AGG | - | chr1_3:28628177-28628196 | Msa0112940:intron | 30.0% | |
| AATAATATGCAGTTGTGCTA+AGG | - | chr1_3:28632652-28632671 | Msa0112940:intron | 30.0% | |
| ! | TGCTAAGGCTTTAATATATC+AGG | - | chr1_3:28632667-28632686 | Msa0112940:intron | 30.0% |
| AATACATGCTTGAAGATTGA+TGG | + | chr1_3:28632706-28632725 | None:intergenic | 30.0% | |
| AAAGGGAAAAAATTGGGATA+TGG | + | chr1_3:28633042-28633061 | None:intergenic | 30.0% | |
| GAGGTTTCATTTCATTGAAA+GGG | + | chr1_3:28633059-28633078 | None:intergenic | 30.0% | |
| TGAGGTTTCATTTCATTGAA+AGG | + | chr1_3:28633060-28633079 | None:intergenic | 30.0% | |
| GATTGCATTTCAATAAAGGT+TGG | - | chr1_3:28633084-28633103 | Msa0112940:intron | 30.0% | |
| ATAAACAAATGTGTGAGATG+AGG | + | chr1_3:28633149-28633168 | None:intergenic | 30.0% | |
| !! | GTGTTATAAAGTTGATGGAT+TGG | + | chr1_3:28633332-28633351 | None:intergenic | 30.0% |
| ! | AACATGTTCCAGATTTTCAT+AGG | - | chr1_3:28633415-28633434 | Msa0112940:intron | 30.0% |
| !!! | TCTGAATTTTTTTGTTGCAG+AGG | - | chr1_3:28633568-28633587 | Msa0112940:intron | 30.0% |
| !!! | CTGAATTTTTTTGTTGCAGA+GGG | - | chr1_3:28633569-28633588 | Msa0112940:intron | 30.0% |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1_3:28629297-28629316 | Msa0112940:intron | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1_3:28629351-28629370 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1_3:28629423-28629442 | Msa0112940:CDS | 30.0% | |
| ! | GAAAAATCACCTGAGAATTT+TGG | + | chr1_3:28634046-28634065 | None:intergenic | 30.0% |
| ! | GTTGCAATTTTATGTCTGAA+AGG | - | chr1_3:28634170-28634189 | Msa0112940:CDS | 30.0% |
| ! | TAAACCATGATTTGAAACAG+TGG | - | chr1_3:28634574-28634593 | Msa0112940:CDS | 30.0% |
| TTAATGGAACTGCAACAATA+AGG | - | chr1_3:28634634-28634653 | Msa0112940:CDS | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | - | chr1_3:28634635-28634654 | Msa0112940:CDS | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1_3:28634778-28634797 | Msa0112940:CDS | 30.0% |
| GTCATCGACAAAAGAAATAA+AGG | + | chr1_3:28634952-28634971 | None:intergenic | 30.0% | |
| ! | TATTTCTTTTGTCGATGACA+AGG | - | chr1_3:28634953-28634972 | Msa0112940:intron | 30.0% |
| GATGACAAGGTTATAAGAAA+GGG | - | chr1_3:28634966-28634985 | Msa0112940:intron | 30.0% | |
| ATGACAAGGTTATAAGAAAG+GGG | - | chr1_3:28634967-28634986 | Msa0112940:intron | 30.0% | |
| ! | CCCTCAAGAAAATTTTCTTT+TGG | + | chr1_3:28635055-28635074 | None:intergenic | 30.0% |
| GATGAAGCATAAAACATTCA+AGG | - | chr1_3:28635201-28635220 | Msa0112940:intron | 30.0% | |
| ! | GCATAAAACATTCAAGGTTT+TGG | - | chr1_3:28635207-28635226 | Msa0112940:intron | 30.0% |
| AGGATGTCATGAAAATATTG+TGG | - | chr1_3:28630821-28630840 | Msa0112940:intron | 30.0% | |
| ATTTATGAAAGAAGGCAAAG+TGG | - | chr1_3:28635476-28635495 | Msa0112940:intron | 30.0% | |
| ! | TTCATCTCTTATTTAAGCCT+AGG | - | chr1_3:28635586-28635605 | Msa0112940:intron | 30.0% |
| !!! | TGACTGCTTGTAATGTTTTT+TGG | - | chr1_3:28635736-28635755 | Msa0112940:intron | 30.0% |
| TTCAAAACTTGAATATCGAC+CGG | + | chr1_3:28636348-28636367 | None:intergenic | 30.0% | |
| AATTACTATGAGAGTCTTTG+TGG | - | chr1_3:28636463-28636482 | Msa0112940:five_prime_UTR | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | - | chr1_3:28636513-28636532 | Msa0112940:five_prime_UTR | 30.0% | |
| TTGGAAAACGAGAGATCAAT+CGG | + | chr1_3:28627696-28627715 | None:intergenic | 35.0% | |
| AACTGGAAGAATAGGTTCAA+TGG | - | chr1_3:28628030-28628049 | Msa0112940:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr1_3:28628243-28628262 | None:intergenic | 35.0% | |
| !! | ACAAAGCAAATCCACTTTTG+TGG | - | chr1_3:28628598-28628617 | Msa0112940:intron | 35.0% |
| GCATACACTCAAAAACACAT+TGG | + | chr1_3:28628736-28628755 | None:intergenic | 35.0% | |
| TCTCTATAAATGACCTGTAC+TGG | - | chr1_3:28628896-28628915 | Msa0112940:intron | 35.0% | |
| ACTTTATTACTGTCCAGTAC+AGG | + | chr1_3:28628912-28628931 | None:intergenic | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | - | chr1_3:28628914-28628933 | Msa0112940:intron | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1_3:28629341-28629360 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGAAA+TGG | - | chr1_3:28629369-28629388 | Msa0112940:CDS | 35.0% |
| TGGAGAGAAATGGTGATATT+TGG | - | chr1_3:28629379-28629398 | Msa0112940:CDS | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1_3:28629565-28629584 | None:intergenic | 35.0% | |
| AAATGTCAAAGCAAGCTCAA+AGG | - | chr1_3:28629652-28629671 | Msa0112940:CDS | 35.0% | |
| CAAGCTCAAAGGACAATAAA+AGG | - | chr1_3:28629663-28629682 | Msa0112940:CDS | 35.0% | |
| AAAGGGAAGAGAAAATTCTC+AGG | - | chr1_3:28629681-28629700 | Msa0112940:CDS | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | - | chr1_3:28629691-28629710 | Msa0112940:CDS | 35.0% | |
| CTTTACAGGTAGTAACAAAG+TGG | - | chr1_3:28629885-28629904 | Msa0112940:intron | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1_3:28629985-28630004 | Msa0112940:intron | 35.0% | |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1_3:28629996-28630015 | Msa0112940:intron | 35.0% |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1_3:28630004-28630023 | None:intergenic | 35.0% | |
| ! | TAAACCATGATTTGGAACAG+TGG | - | chr1_3:28630075-28630094 | Msa0112940:intron | 35.0% |
| TTAAAGGGACTGCAACAATA+AGG | - | chr1_3:28630135-28630154 | Msa0112940:intron | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | - | chr1_3:28630136-28630155 | Msa0112940:intron | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1_3:28630150-28630169 | Msa0112940:intron | 35.0% |
| ! | GAAGTGAGTTTGAGGTATTA+TGG | - | chr1_3:28630179-28630198 | Msa0112940:intron | 35.0% |
| AAAGAAAGATCTTGTATGGG+AGG | - | chr1_3:28630206-28630225 | Msa0112940:intron | 35.0% | |
| AGGTGGTTGGAAAATATTCA+GGG | - | chr1_3:28630226-28630245 | Msa0112940:CDS | 35.0% | |
| CCTAGTAATTTCTTTCGGAT+TGG | + | chr1_3:28630350-28630369 | None:intergenic | 35.0% | |
| CCAATCCGAAAGAAATTACT+AGG | - | chr1_3:28630347-28630366 | Msa0112940:intron | 35.0% | |
| TGGACAAGGTTATAAGAAAG+GGG | - | chr1_3:28630424-28630443 | Msa0112940:intron | 35.0% | |
| AACTGAATCCTGGATAACTT+AGG | + | chr1_3:28630472-28630491 | None:intergenic | 35.0% | |
| TTATGCCTGTATTGTACAGA+AGG | - | chr1_3:28630628-28630647 | Msa0112940:intron | 35.0% | |
| ! | GAAGCATACATTCAAGGTTT+TGG | - | chr1_3:28630663-28630682 | Msa0112940:intron | 35.0% |
| ! | CCTCTTTTCATAAACTCCTT+TGG | + | chr1_3:28630804-28630823 | None:intergenic | 35.0% |
| CCAAAGGAGTTTATGAAAAG+AGG | - | chr1_3:28630801-28630820 | Msa0112940:intron | 35.0% | |
| AAAGAATGCAATGTGGAGAT+TGG | - | chr1_3:28630939-28630958 | Msa0112940:intron | 35.0% | |
| AAATTACATAAGGTCCCCTT+CGG | + | chr1_3:28631143-28631162 | None:intergenic | 35.0% | |
| TTAATCAATACCCGTAAGCA+CGG | + | chr1_3:28631288-28631307 | None:intergenic | 35.0% | |
| AATTTCTTAACCATGGTCTC+AGG | - | chr1_3:28631407-28631426 | Msa0112940:intron | 35.0% | |
| ! | TCGCTTCTTTCTTCTTGTTT+CGG | + | chr1_3:28631952-28631971 | None:intergenic | 35.0% |
| CAAGCACCAAAGTAATTCAA+AGG | + | chr1_3:28632805-28632824 | None:intergenic | 35.0% | |
| !! | CTTTGAATTACTTTGGTGCT+TGG | - | chr1_3:28632803-28632822 | Msa0112940:intron | 35.0% |
| ATTGGGATATGGATTTGTGA+AGG | + | chr1_3:28633031-28633050 | None:intergenic | 35.0% | |
| !! | ATTTAAGAAGTGCTTGGGTT+GGG | + | chr1_3:28633270-28633289 | None:intergenic | 35.0% |
| !! | GAAGGATTTAAGAAGTGCTT+GGG | + | chr1_3:28633275-28633294 | None:intergenic | 35.0% |
| !! | TGAAGGATTTAAGAAGTGCT+TGG | + | chr1_3:28633276-28633295 | None:intergenic | 35.0% |
| !! | TTTCAGAAAGTATTGGGCTA+AGG | + | chr1_3:28633383-28633402 | None:intergenic | 35.0% |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1_3:28629341-28629360 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_3:28633675-28633694 | Msa0112940:intron | 35.0% |
| AAATGCCAAAGCAAGCTAAA+AGG | - | chr1_3:28633972-28633991 | Msa0112940:CDS | 35.0% | |
| CAAGCTAAAAGGACAAGAAA+TGG | - | chr1_3:28633983-28634002 | Msa0112940:CDS | 35.0% | |
| !!! | ATCACCTGAGAATTTTGGTT+GGG | + | chr1_3:28634041-28634060 | None:intergenic | 35.0% |
| !! | AATCACCTGAGAATTTTGGT+TGG | + | chr1_3:28634042-28634061 | None:intergenic | 35.0% |
| AGGTAGTAACAAAGTAGCAA+TGG | - | chr1_3:28634396-28634415 | Msa0112940:intron | 35.0% | |
| CATTAACAGCTTCAGATGTT+AGG | + | chr1_3:28634441-28634460 | None:intergenic | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1_3:28629985-28630004 | Msa0112940:intron | 35.0% | |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1_3:28629996-28630015 | Msa0112940:intron | 35.0% |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1_3:28630004-28630023 | None:intergenic | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | + | chr1_3:28634581-28634600 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACT+TGG | + | chr1_3:28634603-28634622 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1_3:28630150-28630169 | Msa0112940:intron | 35.0% |
| ! | GAGGTGAGTTTGAGATATTA+TGG | - | chr1_3:28634678-28634697 | Msa0112940:CDS | 35.0% |
| TATGGTACCCAGAAAAAATG+TGG | - | chr1_3:28634696-28634715 | Msa0112940:CDS | 35.0% | |
| TACCCAGAAAAAATGTGGTA+TGG | - | chr1_3:28634701-28634720 | Msa0112940:CDS | 35.0% | |
| ACCCAGAAAAAATGTGGTAT+GGG | - | chr1_3:28634702-28634721 | Msa0112940:CDS | 35.0% | |
| !!! | ACCCATACCACATTTTTTCT+GGG | + | chr1_3:28634706-28634725 | None:intergenic | 35.0% |
| AATGTTACTATTACTCGTGC+CGG | - | chr1_3:28634816-28634835 | Msa0112940:CDS | 35.0% | |
| CCTAGTAATTTCTTTGCGAA+TGG | + | chr1_3:28634849-28634868 | None:intergenic | 35.0% | |
| CCATTCGCAAAGAAATTACT+AGG | - | chr1_3:28634846-28634865 | Msa0112940:CDS | 35.0% | |
| CGATGACAAGGTTATAAGAA+AGG | - | chr1_3:28634965-28634984 | Msa0112940:intron | 35.0% | |
| ! | TATAAGAAAGGGGTCTTTTG+TGG | - | chr1_3:28634977-28634996 | Msa0112940:intron | 35.0% |
| TTATGCCTGTATTGTACAGA+AGG | - | chr1_3:28630628-28630647 | Msa0112940:intron | 35.0% | |
| ! | GTTTTATGCTTCATCACATC+AGG | + | chr1_3:28635196-28635215 | None:intergenic | 35.0% |
| ! | CCTCTTTTCATAAACTCCTT+CGG | + | chr1_3:28630804-28630823 | None:intergenic | 35.0% |
| !! | TCCTTAAGTTGATTGATGAG+AGG | - | chr1_3:28635517-28635536 | Msa0112940:intron | 35.0% |
| TCCTCTCATCAATCAACTTA+AGG | + | chr1_3:28635521-28635540 | None:intergenic | 35.0% | |
| TATCGTGTCTGCCTTTAATT+TGG | - | chr1_3:28635701-28635720 | Msa0112940:intron | 35.0% | |
| CATTGTAAGCTCATGTGAAA+TGG | - | chr1_3:28636013-28636032 | Msa0112940:intron | 35.0% | |
| !! | ACTTTATATAAGGTACCGTC+CGG | + | chr1_3:28636040-28636059 | None:intergenic | 35.0% |
| TGCAACATGCGTAATTATAG+AGG | + | chr1_3:28636117-28636136 | None:intergenic | 35.0% | |
| GATTATGTTGCAATCTCGAT+CGG | + | chr1_3:28636264-28636283 | None:intergenic | 35.0% | |
| TCAAAACTTGAATATCGACC+GGG | + | chr1_3:28636347-28636366 | None:intergenic | 35.0% | |
| ! | TGAAATAAGAGGTGTGCAAT+TGG | - | chr1_3:28636364-28636383 | Msa0112940:CDS | 35.0% |
| AAAGAATGCAAAGTGGAGAT+TGG | - | chr1_3:28636520-28636539 | Msa0112940:five_prime_UTR | 35.0% | |
| !! | TCCTTAAGTTGATTGATGAG+AGG | - | chr1_3:28635517-28635536 | Msa0112940:intron | 35.0% |
| TCCTCTCATCAATCAACTTA+AGG | + | chr1_3:28635521-28635540 | None:intergenic | 35.0% | |
| GTGTTTGATGTTTCAATTGC+AGG | - | chr1_3:28636583-28636602 | Msa0112940:intron | 35.0% | |
| GATGGAGAAGAAGAAGCTAA+AGG | + | chr1_3:28627633-28627652 | None:intergenic | 40.0% | |
| GGAAACTGTAGACGATGATT+GGG | + | chr1_3:28627675-28627694 | None:intergenic | 40.0% | |
| AGCGTTGCATCTCTAATCAT+TGG | + | chr1_3:28627715-28627734 | None:intergenic | 40.0% | |
| CGCTGAAGATAGACTTCAAT+CGG | - | chr1_3:28627731-28627750 | Msa0112940:intron | 40.0% | |
| TCATCTTCATCCAACAGACA+TGG | - | chr1_3:28627781-28627800 | Msa0112940:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr1_3:28628242-28628261 | None:intergenic | 40.0% | |
| ATGGCAGATTAAGGGATCAA+AGG | - | chr1_3:28628684-28628703 | Msa0112940:intron | 40.0% | |
| TGGCAGATTAAGGGATCAAA+GGG | - | chr1_3:28628685-28628704 | Msa0112940:intron | 40.0% | |
| !! | CTTTGGTGTTGGATTGAACT+TGG | + | chr1_3:28628837-28628856 | None:intergenic | 40.0% |
| !! | TGGTGTTACTACTTTGGTGT+TGG | + | chr1_3:28628848-28628867 | None:intergenic | 40.0% |
| ATTCACACTTCACACTTCAC+AGG | - | chr1_3:28628977-28628996 | Msa0112940:intron | 40.0% | |
| !! | GTTCAGTCTGTTTTTCTCTC+AGG | + | chr1_3:28629019-28629038 | None:intergenic | 40.0% |
| GATGCTAGTGAGTGAGTATT+GGG | + | chr1_3:28629078-28629097 | None:intergenic | 40.0% | |
| TGATGCTAGTGAGTGAGTAT+TGG | + | chr1_3:28629079-28629098 | None:intergenic | 40.0% | |
| GAGGGTTCCTAAGATATATG+TGG | - | chr1_3:28629281-28629300 | Msa0112940:intron | 40.0% | |
| AAGTGATGAAGAGAGTGATG+AGG | - | chr1_3:28629626-28629645 | Msa0112940:intron | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1_3:28629911-28629930 | None:intergenic | 40.0% |
| GAAGGCTAGAAAATACCCAA+TGG | - | chr1_3:28629918-28629937 | Msa0112940:intron | 40.0% | |
| GTAACCACTGTTCCAAATCA+TGG | + | chr1_3:28630082-28630101 | None:intergenic | 40.0% | |
| GAGGTGGTTGGAAAATATTC+AGG | - | chr1_3:28630225-28630244 | Msa0112940:CDS | 40.0% | |
| ATTGTCACTATTACTCGTGC+CGG | - | chr1_3:28630317-28630336 | Msa0112940:CDS | 40.0% | |
| GTTAGTAGCCTAAGTTATCC+AGG | - | chr1_3:28630461-28630480 | Msa0112940:intron | 40.0% | |
| CTCATATGAAATGGACCGAA+GGG | - | chr1_3:28631125-28631144 | Msa0112940:intron | 40.0% | |
| TCATATGAAATGGACCGAAG+GGG | - | chr1_3:28631126-28631145 | Msa0112940:intron | 40.0% | |
| TAATCAATACCCGTAAGCAC+GGG | + | chr1_3:28631287-28631306 | None:intergenic | 40.0% | |
| GAGAATCGATGGAGAAAAAG+AGG | + | chr1_3:28631816-28631835 | None:intergenic | 40.0% | |
| AACGAGTGATCAATCGGAAA+CGG | + | chr1_3:28631872-28631891 | None:intergenic | 40.0% | |
| ATGGTGAAGATAGACTTCGA+TGG | - | chr1_3:28631912-28631931 | Msa0112940:intron | 40.0% | |
| TGGTGAAGATAGACTTCGAT+GGG | - | chr1_3:28631913-28631932 | Msa0112940:intron | 40.0% | |
| TCATCTTCATCGAACAGACA+TGG | - | chr1_3:28631981-28632000 | Msa0112940:intron | 40.0% | |
| !! | GAATTACTTTGGTGCTTGGA+AGG | - | chr1_3:28632807-28632826 | Msa0112940:intron | 40.0% |
| ATGGATCAGCAAAAGAAAGC+AGG | + | chr1_3:28633123-28633142 | None:intergenic | 40.0% | |
| AATGTGTGAGATGAGGTTGA+TGG | + | chr1_3:28633142-28633161 | None:intergenic | 40.0% | |
| !! | GATTTAAGAAGTGCTTGGGT+TGG | + | chr1_3:28633271-28633290 | None:intergenic | 40.0% |
| !! | GGCTAAGGCTTTAAGAAATG+AGG | + | chr1_3:28633368-28633387 | None:intergenic | 40.0% |
| GAGGGTTCCTAAGAAATATG+TGG | - | chr1_3:28633587-28633606 | Msa0112940:intron | 40.0% | |
| GTGGAGAGTAATGGTGATAT+TGG | - | chr1_3:28633684-28633703 | Msa0112940:intron | 40.0% | |
| CTCTTCATGACTTTCTTCTG+TGG | + | chr1_3:28633915-28633934 | None:intergenic | 40.0% | |
| AAGTGATGACAGTTCAGATG+AGG | - | chr1_3:28633946-28633965 | Msa0112940:CDS | 40.0% | |
| !!! | CTTGTCCTTTTAGCTTGCTT+TGG | + | chr1_3:28633980-28633999 | None:intergenic | 40.0% |
| AGTTAATGCCTAAACTTGGC+AGG | - | chr1_3:28634376-28634395 | Msa0112940:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | + | chr1_3:28634387-28634406 | None:intergenic | 40.0% | |
| CAAAGTAGCAATGGTGAAGA+AGG | - | chr1_3:28634405-28634424 | Msa0112940:intron | 40.0% | |
| !!! | CACCCATACCACATTTTTTC+TGG | + | chr1_3:28634707-28634726 | None:intergenic | 40.0% |
| CAGAAAAAATGTGGTATGGG+TGG | - | chr1_3:28634705-28634724 | Msa0112940:CDS | 40.0% | |
| AAAAAATGTGGTATGGGTGG+TGG | - | chr1_3:28634708-28634727 | Msa0112940:CDS | 40.0% | |
| !! | GTGGTGGATGGAAAATATTC+AGG | - | chr1_3:28634724-28634743 | Msa0112940:CDS | 40.0% |
| !! | TGGTAAGAGTGTTGCAAAGA+AGG | - | chr1_3:28634997-28635016 | Msa0112940:intron | 40.0% |
| GTTGCAAAGAAGGAAGACAT+TGG | - | chr1_3:28635007-28635026 | Msa0112940:CDS | 40.0% | |
| TTTGGTGAAGAACACAGAAC+CGG | - | chr1_3:28635225-28635244 | Msa0112940:intron | 40.0% | |
| CCGAAGGAGTTTATGAAAAG+AGG | - | chr1_3:28635345-28635364 | Msa0112940:intron | 40.0% | |
| TGAAAATGGGGAGAAAGTCA+TGG | - | chr1_3:28635391-28635410 | Msa0112940:intron | 40.0% | |
| AAAGAAGGCAAAGTGGAGAT+TGG | - | chr1_3:28635483-28635502 | Msa0112940:intron | 40.0% | |
| !! | TTTAAGCCTAGGTACTGAGT+TGG | - | chr1_3:28635597-28635616 | Msa0112940:intron | 40.0% |
| AAATGTCCAACTCAGTACCT+AGG | + | chr1_3:28635606-28635625 | None:intergenic | 40.0% | |
| TTGAAGCAGAGACGTTGAAT+TGG | - | chr1_3:28635831-28635850 | Msa0112940:intron | 40.0% | |
| TGAAGCAGAGACGTTGAATT+GGG | - | chr1_3:28635832-28635851 | Msa0112940:intron | 40.0% | |
| TAAGCTCATGTGAAATGGAC+CGG | - | chr1_3:28636018-28636037 | Msa0112940:intron | 40.0% | |
| GGACGGTACCTTATATAAAG+TGG | - | chr1_3:28636039-28636058 | Msa0112940:intron | 40.0% | |
| ATTACGCATGTTGCAACACT+CGG | - | chr1_3:28636122-28636141 | Msa0112940:intron | 40.0% | |
| !! | TTTTCAGGAGGCTCTTTACT+AGG | - | chr1_3:28636201-28636220 | Msa0112940:intron | 40.0% |
| TTTCAGGAGGCTCTTTACTA+GGG | - | chr1_3:28636202-28636221 | Msa0112940:intron | 40.0% | |
| CGTTGCTTCAGAATTTCCAA+AGG | - | chr1_3:28636238-28636257 | Msa0112940:intron | 40.0% | |
| !! | TGTATTGACTAGTGAATCCC+CGG | - | chr1_3:28636326-28636345 | Msa0112940:CDS | 40.0% |
| CAAAACTTGAATATCGACCG+GGG | + | chr1_3:28636346-28636365 | None:intergenic | 40.0% | |
| CTTGGAGAACAAACAGCTAA+TGG | + | chr1_3:28636616-28636635 | None:intergenic | 40.0% | |
| TGTGAAGAGAAGACTGAGTG+TGG | + | chr1_3:28627525-28627544 | None:intergenic | 45.0% | |
| ! | ATTCAACGCGCCACCTTTTA+GGG | - | chr1_3:28627558-28627577 | Msa0112940:CDS | 45.0% |
| CATGGAACAACGACCCTAAA+AGG | + | chr1_3:28627574-28627593 | None:intergenic | 45.0% | |
| !!! | CTTTTAGGGTCGTTGTTCCA+TGG | - | chr1_3:28627572-28627591 | Msa0112940:CDS | 45.0% |
| CGGAAACTGTAGACGATGAT+TGG | + | chr1_3:28627676-28627695 | None:intergenic | 45.0% | |
| TATATATACTCCCTCCGTCC+CGG | - | chr1_3:28628221-28628240 | Msa0112940:intron | 45.0% | |
| GTAGGTCAATTAAACCGGGA+CGG | - | chr1_3:28628430-28628449 | Msa0112940:intron | 45.0% | |
| GGATCAAAGGGAAAGACACA+CGG | - | chr1_3:28628697-28628716 | Msa0112940:intron | 45.0% | |
| !! | AGTGAGTGAGTATTGGGCTA+AGG | + | chr1_3:28629072-28629091 | None:intergenic | 45.0% |
| AGGTAGTAACAAAGTGGCCA+TGG | - | chr1_3:28629891-28629910 | Msa0112940:intron | 45.0% | |
| ! | CAGCTTCAGATTGTGCCATT+GGG | + | chr1_3:28629936-28629955 | None:intergenic | 45.0% |
| ACAGCTTCAGATTGTGCCAT+TGG | + | chr1_3:28629937-28629956 | None:intergenic | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1_3:28630157-28630176 | Msa0112940:intron | 45.0% |
| GAAAGATCTTGTATGGGAGG+TGG | - | chr1_3:28630209-28630228 | Msa0112940:intron | 45.0% | |
| CACGACCTTCTGTACAATAC+AGG | + | chr1_3:28630636-28630655 | None:intergenic | 45.0% | |
| GTATTTGCAGAGTGCACCAA+AGG | - | chr1_3:28630785-28630804 | Msa0112940:intron | 45.0% | |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1_3:28630838-28630857 | Msa0112940:intron | 45.0% | |
| TGAAAATGGGGAGGAAGTCA+TGG | - | chr1_3:28630847-28630866 | Msa0112940:intron | 45.0% | |
| !! | ATGAGAGTATTCTTGGCTGC+AGG | - | chr1_3:28630889-28630908 | Msa0112940:intron | 45.0% |
| CCTTCGGTCCATTTCATATG+AGG | + | chr1_3:28631127-28631146 | None:intergenic | 45.0% | |
| CCTCATATGAAATGGACCGA+AGG | - | chr1_3:28631124-28631143 | Msa0112940:intron | 45.0% | |
| ACAATGCTAACCCGTGCTTA+CGG | - | chr1_3:28631274-28631293 | Msa0112940:intron | 45.0% | |
| GAAATGAGTAGAGATCGCCA+TGG | + | chr1_3:28631779-28631798 | None:intergenic | 45.0% | |
| CGAAGGATGATGAGAATCGA+TGG | + | chr1_3:28631827-28631846 | None:intergenic | 45.0% | |
| GGTAGATGACGAGATCGATT+GGG | + | chr1_3:28631851-28631870 | None:intergenic | 45.0% | |
| TCTTCATCGAACAGACATGG+CGG | - | chr1_3:28631984-28632003 | Msa0112940:intron | 45.0% | |
| AATCCTTCACCAACCTACAG+AGG | - | chr1_3:28633287-28633306 | Msa0112940:intron | 45.0% | |
| AGCTGAAGACACAGAAGAAG+AGG | - | chr1_3:28633859-28633878 | Msa0112940:CDS | 45.0% | |
| GCTGAAGACACAGAAGAAGA+GGG | - | chr1_3:28633860-28633879 | Msa0112940:CDS | 45.0% | |
| TGATGACAGTTCAGATGAGG+TGG | - | chr1_3:28633949-28633968 | Msa0112940:CDS | 45.0% | |
| TGGCAAGAGAAAAGCGAGTA+TGG | - | chr1_3:28634003-28634022 | Msa0112940:CDS | 45.0% | |
| ACCACCCAACCAAAATTCTC+AGG | - | chr1_3:28634034-28634053 | Msa0112940:CDS | 45.0% | |
| !!! | ACCTGAGAATTTTGGTTGGG+TGG | + | chr1_3:28634038-28634057 | None:intergenic | 45.0% |
| GGAACTGCAACAATAAGGGT+TGG | - | chr1_3:28634639-28634658 | Msa0112940:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1_3:28630157-28630176 | Msa0112940:intron | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1_3:28630160-28630179 | Msa0112940:intron | 45.0% |
| CTTTGCGAATGGTTCGTTTC+CGG | + | chr1_3:28634838-28634857 | None:intergenic | 45.0% | |
| GCAAAGAAGGAAGACATTGG+AGG | - | chr1_3:28635010-28635029 | Msa0112940:intron | 45.0% | |
| ACATTGGAGGAACGTCTTCT+AGG | - | chr1_3:28635023-28635042 | Msa0112940:intron | 45.0% | |
| CAGGACCTTCTGTACAATAC+AGG | + | chr1_3:28635177-28635196 | None:intergenic | 45.0% | |
| GTATTTGCAGTGTGTACCGA+AGG | - | chr1_3:28635329-28635348 | Msa0112940:intron | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | - | chr1_3:28635444-28635463 | Msa0112940:intron | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | - | chr1_3:28635448-28635467 | Msa0112940:intron | 45.0% | |
| GAAGCAGAGACGTTGAATTG+GGG | - | chr1_3:28635833-28635852 | Msa0112940:intron | 45.0% | |
| !! | AATATATGATAAAAAAAAAT+TGG | - | chr1_3:28629829-28629848 | Msa0112940:intron | 5.0% |
| !! | AAAAATAATAAATACTTAAT+TGG | - | chr1_3:28634303-28634322 | Msa0112940:intron | 5.0% |
| ! | GATTCAACGCGCCACCTTTT+AGG | - | chr1_3:28627557-28627576 | Msa0112940:CDS | 50.0% |
| GGAACAACGACCCTAAAAGG+TGG | + | chr1_3:28627571-28627590 | None:intergenic | 50.0% | |
| CGAAGGAGGATGAGAATCGA+TGG | + | chr1_3:28627651-28627670 | None:intergenic | 50.0% | |
| GTAGACGATGATTGGGACGA+AGG | + | chr1_3:28627668-28627687 | None:intergenic | 50.0% | |
| AACGACACTGCCATGTCTGT+TGG | + | chr1_3:28627794-28627813 | None:intergenic | 50.0% | |
| GAGCTTGGCTGAACTGCAAT+CGG | + | chr1_3:28627820-28627839 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr1_3:28628238-28628257 | None:intergenic | 50.0% | |
| GTCAATTAAACCGGGACGGA+GGG | - | chr1_3:28628434-28628453 | Msa0112940:intron | 50.0% | |
| TTTCTATACTCCCTCCGTCC+CGG | + | chr1_3:28628447-28628466 | None:intergenic | 50.0% | |
| GGCTAAGGCTTAGAGAAGTG+AGG | + | chr1_3:28629057-28629076 | None:intergenic | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1_3:28629900-28629919 | Msa0112940:intron | 50.0% | |
| GGGACTGCAACAATAAGGGT+TGG | - | chr1_3:28630140-28630159 | Msa0112940:intron | 50.0% | |
| GGAGTGTGGAAGTGAGTTTG+AGG | - | chr1_3:28630171-28630190 | Msa0112940:intron | 50.0% | |
| GATCTTGTATGGGAGGTGGT+TGG | - | chr1_3:28630213-28630232 | Msa0112940:intron | 50.0% | |
| ! | CTTTCGGATTGGGTCGTTTC+CGG | + | chr1_3:28630339-28630358 | None:intergenic | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1_3:28630681-28630700 | Msa0112940:intron | 50.0% | |
| CTTGGCTGCAGGTTCAGTAA+AGG | - | chr1_3:28630900-28630919 | Msa0112940:intron | 50.0% | |
| GCTGCAGGTTCAGTAAAGGT+TGG | - | chr1_3:28630904-28630923 | Msa0112940:intron | 50.0% | |
| CAATGCTAACCCGTGCTTAC+GGG | - | chr1_3:28631275-28631294 | Msa0112940:intron | 50.0% | |
| TAACCATGGTCTCAGGACAC+CGG | - | chr1_3:28631414-28631433 | Msa0112940:intron | 50.0% | |
| CATGGAACAATGACCCGAAC+CGG | + | chr1_3:28631761-28631780 | None:intergenic | 50.0% | |
| CGGTAGATGACGAGATCGAT+TGG | + | chr1_3:28631852-28631871 | None:intergenic | 50.0% | |
| GCGGTGTAGGCAATTCTGTA+AGG | - | chr1_3:28632003-28632022 | Msa0112940:intron | 50.0% | |
| GTGTTTGTGCCTCTGTAGGT+TGG | + | chr1_3:28633299-28633318 | None:intergenic | 50.0% | |
| GGTAGTGTTTGTGCCTCTGT+AGG | + | chr1_3:28633303-28633322 | None:intergenic | 50.0% | |
| GAGGCACAAACACTACCACA+CGG | - | chr1_3:28633306-28633325 | Msa0112940:CDS | 50.0% | |
| !! | AAGTTGATGGATTGGCCGTG+TGG | + | chr1_3:28633324-28633343 | None:intergenic | 50.0% |
| !! | AATGTGGTATGGGTGGTGGA+TGG | - | chr1_3:28634712-28634731 | Msa0112940:CDS | 50.0% |
| GTGAAGAACACAGAACCGGT+AGG | - | chr1_3:28635229-28635248 | Msa0112940:intron | 50.0% | |
| CTCATGTGAAATGGACCGGA+CGG | - | chr1_3:28636022-28636041 | Msa0112940:intron | 50.0% | |
| TTGCAATCTCGATCGGCCTT+TGG | + | chr1_3:28636257-28636276 | None:intergenic | 50.0% | |
| ATGAGAGTCTTTGTGGCTGC+AGG | - | chr1_3:28636470-28636489 | Msa0112940:five_prime_UTR | 50.0% | |
| TGTGGCTGCAGGTTCAGTAA+AGG | - | chr1_3:28636481-28636500 | Msa0112940:five_prime_UTR | 50.0% | |
| GCTGCAGGTTCAGTAAAGGT+TGG | - | chr1_3:28630904-28630923 | Msa0112940:intron | 50.0% | |
| !! | AGAGAAACGAGAGAGCGCCA+TGG | + | chr1_3:28627592-28627611 | None:intergenic | 55.0% |
| GACGATGATTGGGACGAAGG+AGG | + | chr1_3:28627665-28627684 | None:intergenic | 55.0% | |
| TGCAGTTCAGCCAAGCTCAG+CGG | - | chr1_3:28627822-28627841 | Msa0112940:intron | 55.0% | |
| AGCCAAGCTCAGCGGCAATT+CGG | - | chr1_3:28627830-28627849 | Msa0112940:intron | 55.0% | |
| TACCGAATTGCCGCTGAGCT+TGG | + | chr1_3:28627835-28627854 | None:intergenic | 55.0% | |
| AGCTCAGCGGCAATTCGGTA+AGG | - | chr1_3:28627835-28627854 | Msa0112940:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr1_3:28628234-28628253 | None:intergenic | 55.0% | |
| GGTCAATTAAACCGGGACGG+AGG | - | chr1_3:28628433-28628452 | Msa0112940:intron | 55.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1_3:28629552-28629571 | Msa0112940:CDS | 55.0% |
| TAACCGGTGTCCTGAGACCA+TGG | + | chr1_3:28631420-28631439 | None:intergenic | 55.0% | |
| CAAACGGTGGCGCGTTGAAT+CGG | + | chr1_3:28631725-28631744 | None:intergenic | 55.0% | |
| ! | CGGTTCGGGTCATTGTTCCA+TGG | - | chr1_3:28631759-28631778 | Msa0112940:intron | 55.0% |
| GACGAGATCGATTGGGACGA+AGG | + | chr1_3:28631844-28631863 | None:intergenic | 55.0% | |
| TCGAACAGACATGGCGGTGT+AGG | - | chr1_3:28631990-28632009 | Msa0112940:intron | 55.0% | |
| !! | GTGCCTCTGTAGGTTGGTGA+AGG | + | chr1_3:28633293-28633312 | None:intergenic | 55.0% |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr1_3:28628235-28628254 | None:intergenic | 60.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1_3:28630685-28630704 | Msa0112940:intron | 60.0% | |
| !! | TGGCGCGTTGGTTCAAACGG+TGG | + | chr1_3:28631738-28631757 | None:intergenic | 60.0% |
| !! | CGGTGGCGCGTTGGTTCAAA+CGG | + | chr1_3:28631741-28631760 | None:intergenic | 60.0% |
| CGTTTGAACCAACGCGCCAC+CGG | - | chr1_3:28631739-28631758 | Msa0112940:intron | 60.0% | |
| GGAACAATGACCCGAACCGG+TGG | + | chr1_3:28631758-28631777 | None:intergenic | 60.0% | |
| ! | GAACCAACGCGCCACCGGTT+CGG | - | chr1_3:28631744-28631763 | Msa0112940:intron | 65.0% |
| !! | AACCAACGCGCCACCGGTTC+GGG | - | chr1_3:28631745-28631764 | Msa0112940:intron | 65.0% |
| GACCCGAACCGGTGGCGCGT+TGG | + | chr1_3:28631750-28631769 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28627517 | 28636648 | 28627517 | ID=Msa0112940;Name=Msa0112940 |
| chr1_3 | mRNA | 28627517 | 28636648 | 28627517 | ID=Msa0112940-mRNA-1;Parent=Msa0112940;Name=Msa0112940-mRNA-1;_AED=0.31;_eAED=0.31;_QI=238|0.56|0.52|0.94|0.93|0.88|17|0|716 |
| chr1_3 | exon | 28627517 | 28627673 | 28627517 | ID=Msa0112940-mRNA-1:exon:9473;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28628753 | 28628826 | 28628753 | ID=Msa0112940-mRNA-1:exon:9472;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28628919 | 28628977 | 28628919 | ID=Msa0112940-mRNA-1:exon:9471;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28629092 | 28629190 | 28629092 | ID=Msa0112940-mRNA-1:exon:9470;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28629298 | 28629571 | 28629298 | ID=Msa0112940-mRNA-1:exon:9469;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28629649 | 28629767 | 28629649 | ID=Msa0112940-mRNA-1:exon:9468;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28630218 | 28630343 | 28630218 | ID=Msa0112940-mRNA-1:exon:9467;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28630469 | 28630577 | 28630469 | ID=Msa0112940-mRNA-1:exon:9466;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28630704 | 28630785 | 28630704 | ID=Msa0112940-mRNA-1:exon:9465;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28633297 | 28633370 | 28633297 | ID=Msa0112940-mRNA-1:exon:9464;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28633463 | 28633518 | 28633463 | ID=Msa0112940-mRNA-1:exon:9463;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28633797 | 28634070 | 28633797 | ID=Msa0112940-mRNA-1:exon:9462;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28634148 | 28634272 | 28634148 | ID=Msa0112940-mRNA-1:exon:9461;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28634463 | 28634883 | 28634463 | ID=Msa0112940-mRNA-1:exon:9460;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28635003 | 28635027 | 28635003 | ID=Msa0112940-mRNA-1:exon:9459;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28636314 | 28636599 | 28636314 | ID=Msa0112940-mRNA-1:exon:9458;Parent=Msa0112940-mRNA-1 |
| chr1_3 | exon | 28636620 | 28636648 | 28636620 | ID=Msa0112940-mRNA-1:exon:9457;Parent=Msa0112940-mRNA-1 |
| chr1_3 | five_prime_UTR | 28636620 | 28636648 | 28636620 | ID=Msa0112940-mRNA-1:five_prime_utr;Parent=Msa0112940-mRNA-1 |
| chr1_3 | five_prime_UTR | 28636391 | 28636599 | 28636391 | ID=Msa0112940-mRNA-1:five_prime_utr;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28636314 | 28636390 | 28636314 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28635003 | 28635027 | 28635003 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28634463 | 28634883 | 28634463 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28634148 | 28634272 | 28634148 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28633797 | 28634070 | 28633797 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28633463 | 28633518 | 28633463 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28633297 | 28633370 | 28633297 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28630704 | 28630785 | 28630704 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28630469 | 28630577 | 28630469 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28630218 | 28630343 | 28630218 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28629649 | 28629767 | 28629649 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28629298 | 28629571 | 28629298 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28629092 | 28629190 | 28629092 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28628919 | 28628977 | 28628919 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28628753 | 28628826 | 28628753 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| chr1_3 | CDS | 28627517 | 28627673 | 28627517 | ID=Msa0112940-mRNA-1:cds;Parent=Msa0112940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
