Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113110 | XP_003612224.1 | 96.066 | 483 | 15 | 1 | 1 | 479 | 1 | 483 | 0.0 | 954 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113110 | sp|Q949X7|DCDA1_ARATH | 78.234 | 487 | 90 | 4 | 3 | 479 | 4 | 484 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113110 | G7JXL1 | 96.066 | 483 | 15 | 1 | 1 | 479 | 1 | 483 | 0.0 | 954 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0068040 | Msa0113110 | 0.839141 | 1.892296e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113110 | MtrunA17_Chr5g0405861 | 96.066 | 483 | 15 | 1 | 1 | 479 | 1 | 483 | 0.0 | 954 |
| Msa0113110 | MtrunA17_Chr3g0143501 | 24.854 | 342 | 225 | 9 | 117 | 444 | 84 | 407 | 4.00e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113110 | AT3G14390.1 | 78.234 | 487 | 90 | 4 | 3 | 479 | 4 | 484 | 0.0 | 783 |
| Msa0113110 | AT5G11880.1 | 77.984 | 486 | 96 | 3 | 4 | 479 | 5 | 489 | 0.0 | 781 |
Find 138 sgRNAs with CRISPR-Local
Find 390 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGAGATTTGTTGTATTT+TGG | 0.151377 | 1_3:+28812304 | Msa0113110:three_prime_UTR |
| TGCTCAAGAATGTGATATTT+TGG | 0.153172 | 1_3:+28812342 | Msa0113110:three_prime_UTR |
| ATGGATAGGTGTATCTTTAA+TGG | 0.163164 | 1_3:+28807738 | Msa0113110:intron |
| TAATAATAATTACAAGATTT+TGG | 0.185695 | 1_3:+28807437 | Msa0113110:CDS |
| TATTATTGGTTATGCTATTA+AGG | 0.194019 | 1_3:+28807413 | Msa0113110:CDS |
| TGTGGTTTCTGGTGGGGTTT+TGG | 0.196030 | 1_3:-28807211 | None:intergenic |
| GGGAATAAGAACTCTAAATT+TGG | 0.228344 | 1_3:+28809049 | Msa0113110:CDS |
| TGAGAGGGAGAATGAGGTTT+TGG | 0.229862 | 1_3:-28807155 | None:intergenic |
| TGGGAAAATCTTGGAGGATT+TGG | 0.271198 | 1_3:+28807764 | Msa0113110:CDS |
| AAAAGGTTTGATGGTGGATT+TGG | 0.281356 | 1_3:-28807181 | None:intergenic |
| AGGTGTATCTTTAATGGAAA+TGG | 0.285155 | 1_3:+28807744 | Msa0113110:intron |
| CATTGACAGTGAGTTTGATT+TGG | 0.288481 | 1_3:+28807818 | Msa0113110:CDS |
| GAAGGGTTAACATCTATTAT+TGG | 0.304149 | 1_3:+28807399 | Msa0113110:CDS |
| CAGGGATGCGGCCACTATTA+TGG | 0.309551 | 1_3:+28809433 | Msa0113110:CDS |
| CACAGTATCAATTAGATCTC+TGG | 0.317391 | 1_3:-28809564 | None:intergenic |
| TTGAATATCGGTGGTGGACT+TGG | 0.318965 | 1_3:+28809503 | Msa0113110:CDS |
| TCAATTAGATCTCTGGGTTT+AGG | 0.324394 | 1_3:-28809557 | None:intergenic |
| CCTGTTGAGCTAAAGCTTGT+AGG | 0.331964 | 1_3:+28809121 | Msa0113110:CDS |
| TGTGGTGCTGTTCTTGTTAG+TGG | 0.338052 | 1_3:+28807480 | Msa0113110:CDS |
| AAGTCTCTATGATGCTTATC+AGG | 0.346969 | 1_3:+28810066 | Msa0113110:CDS |
| TTGTGAGTCTGCAGATTTCT+TGG | 0.348034 | 1_3:+28811150 | Msa0113110:CDS |
| GAAGTTGATTATTTGAATAT+CGG | 0.349143 | 1_3:+28809491 | Msa0113110:CDS |
| CCTACAAGCTTTAGCTCAAC+AGG | 0.349919 | 1_3:-28809121 | None:intergenic |
| GAATGAGTGATTGAAGGTTT+TGG | 0.353491 | 1_3:-28807115 | None:intergenic |
| TCGCAAGGTGGATGAGATTA+TGG | 0.355259 | 1_3:+28807296 | Msa0113110:CDS |
| GGATAGAACAAAAGGTTTGA+TGG | 0.370462 | 1_3:-28807190 | None:intergenic |
| CTGTTGAGCTAAAGCTTGTA+GGG | 0.386673 | 1_3:+28809122 | Msa0113110:CDS |
| GAGTTTCATTTGCAGGGTAC+TGG | 0.388546 | 1_3:+28811709 | Msa0113110:intron |
| TTGGTCTTGGCTGCCGAAGC+AGG | 0.391605 | 1_3:+28807783 | Msa0113110:CDS |
| CATTGTGATTGATGGAAGTA+TGG | 0.392518 | 1_3:+28810027 | Msa0113110:CDS |
| TAATGGAAATGGGAAAATCT+TGG | 0.395242 | 1_3:+28807755 | Msa0113110:CDS |
| TTATTCCCTGTGGCAACATA+AGG | 0.396444 | 1_3:-28809034 | None:intergenic |
| GGTGTATCTTTAATGGAAAT+GGG | 0.396933 | 1_3:+28807745 | Msa0113110:intron |
| GGCTTACTGTATAGATAAAA+AGG | 0.403335 | 1_3:-28807336 | None:intergenic |
| GTAGGGGCCCACTGTCATCT+TGG | 0.405310 | 1_3:+28809139 | Msa0113110:CDS |
| GACTTTGGTTTCCATCACTA+TGG | 0.405464 | 1_3:+28807056 | Msa0113110:exon |
| GATGCGACCTCCAGAGTATT+GGG | 0.405532 | 1_3:+28811792 | Msa0113110:CDS |
| TTGGAGCATTTGAGAAGCTT+GGG | 0.405741 | 1_3:+28807456 | Msa0113110:CDS |
| AAATCTGCAGACTCACAAAC+AGG | 0.410971 | 1_3:-28811145 | None:intergenic |
| AATCTTGGAGGATTTGGTCT+TGG | 0.411340 | 1_3:+28807770 | Msa0113110:CDS |
| TCATTTGCAGGGTACTGGTC+TGG | 0.412975 | 1_3:+28811714 | Msa0113110:intron |
| TTACATTCTAAATTGTCAAT+TGG | 0.413892 | 1_3:-28812515 | None:intergenic |
| CGGTGCTTATTGTATGAGTA+TGG | 0.417512 | 1_3:+28811750 | Msa0113110:CDS |
| GACCACATGCGGTTGTTTGA+TGG | 0.417915 | 1_3:+28812256 | Msa0113110:CDS |
| CTTAAACTTGCTCTTCGTGC+TGG | 0.418107 | 1_3:+28807510 | Msa0113110:CDS |
| GTGGCAGCTGCAAGAATTGC+TGG | 0.420657 | 1_3:+28807849 | Msa0113110:CDS |
| GCTGTAATCTCAGCAGTTGC+TGG | 0.426820 | 1_3:-28811106 | None:intergenic |
| TTTAAGGATAACCTTGGTAA+TGG | 0.433092 | 1_3:-28809167 | None:intergenic |
| TATTGACGAAATTCGAGCTC+AGG | 0.433675 | 1_3:+28809463 | Msa0113110:CDS |
| ATATTTCAGGTTGAAGATGA+TGG | 0.441114 | 1_3:+28812196 | Msa0113110:intron |
| TTTGGAGCATTTGAGAAGCT+TGG | 0.446081 | 1_3:+28807455 | Msa0113110:CDS |
| ACGAGGGCTTTGTTTGACTT+TGG | 0.450949 | 1_3:+28807041 | Msa0113110:five_prime_UTR |
| TCTGCAGATTTCTTGGGAAA+AGG | 0.451066 | 1_3:+28811157 | Msa0113110:CDS |
| GTTGACAAACACGCCTGCTT+CGG | 0.459688 | 1_3:-28807796 | None:intergenic |
| ATCTCAGCAGTTGCTGGGGC+AGG | 0.461995 | 1_3:-28811100 | None:intergenic |
| GTCCATCCTTATGTTGCCAC+AGG | 0.463820 | 1_3:+28809028 | Msa0113110:CDS |
| TGCTTAGTTAGCCGGGTGAC+AGG | 0.464454 | 1_3:+28809977 | Msa0113110:CDS |
| CACCCGGCTAACTAAGCAAC+AGG | 0.470538 | 1_3:-28809972 | None:intergenic |
| ATTGTGTTGCTTATGTATGA+TGG | 0.471012 | 1_3:+28812468 | Msa0113110:three_prime_UTR |
| TGTGAGTCTGCAGATTTCTT+GGG | 0.472848 | 1_3:+28811151 | Msa0113110:CDS |
| CTGTAATCTCAGCAGTTGCT+GGG | 0.475887 | 1_3:-28811105 | None:intergenic |
| ACACCTGTTGCTTAGTTAGC+CGG | 0.475968 | 1_3:+28809969 | Msa0113110:CDS |
| CTTCGGATTTGTTGAAACAA+TGG | 0.478563 | 1_3:-28807251 | None:intergenic |
| AGATGCGACCTCCAGAGTAT+TGG | 0.480794 | 1_3:+28811791 | Msa0113110:CDS |
| GAGACTTGGGCGGATAAGTT+CGG | 0.487978 | 1_3:-28810050 | None:intergenic |
| CATAGTACCTTGGCAGGAGT+TGG | 0.490280 | 1_3:-28811190 | None:intergenic |
| AATATAGTTGACCATAATAG+TGG | 0.493524 | 1_3:-28809444 | None:intergenic |
| CTGCAAGAATTGCTGGAAAG+AGG | 0.494994 | 1_3:+28807856 | Msa0113110:CDS |
| CATTTGAGAAGCTTGGGTTG+TGG | 0.497583 | 1_3:+28807462 | Msa0113110:CDS |
| TGTTTCAACAAATCCGAAGA+TGG | 0.499132 | 1_3:+28807255 | Msa0113110:CDS |
| TATACCTGCGGATCAACATC+AGG | 0.502240 | 1_3:-28807903 | None:intergenic |
| GCAAGCTGAACCAACCTTGT+GGG | 0.502499 | 1_3:-28807540 | None:intergenic |
| ACAGTATCAATTAGATCTCT+GGG | 0.502707 | 1_3:-28809563 | None:intergenic |
| CACCTGTTGCTTAGTTAGCC+GGG | 0.507585 | 1_3:+28809970 | Msa0113110:CDS |
| GAATGGAACAAGAGTGAGAG+AGG | 0.515700 | 1_3:-28807092 | None:intergenic |
| TTTGGTGAATGAGTGATTGA+AGG | 0.517249 | 1_3:-28807121 | None:intergenic |
| TGAATATCGGTGGTGGACTT+GGG | 0.519431 | 1_3:+28809504 | Msa0113110:CDS |
| ATACATCATAGTACCTTGGC+AGG | 0.520890 | 1_3:-28811196 | None:intergenic |
| TAATCCTGATGTTGATCCGC+AGG | 0.523562 | 1_3:+28807899 | Msa0113110:CDS |
| CTTAAACTCATCATTGAACC+AGG | 0.524711 | 1_3:+28809929 | Msa0113110:CDS |
| GCTAAACTGAAACTAGAAAG+AGG | 0.527006 | 1_3:-28812409 | None:intergenic |
| GATTATTTGAATATCGGTGG+TGG | 0.529387 | 1_3:+28809497 | Msa0113110:CDS |
| AATGATGAGTTTAAGACCAC+GGG | 0.529529 | 1_3:-28809921 | None:intergenic |
| ACAGTGTAGATAGCCATCTT+CGG | 0.530183 | 1_3:-28807268 | None:intergenic |
| ATTGACGAAATTCGAGCTCA+GGG | 0.537509 | 1_3:+28809464 | Msa0113110:CDS |
| GCATATAAAGATGCGTTGGA+AGG | 0.540808 | 1_3:+28807381 | Msa0113110:CDS |
| TTGGTTTCCATCACTATGGT+AGG | 0.541415 | 1_3:+28807060 | Msa0113110:exon |
| CTGGTACATACCCAATACTC+TGG | 0.544316 | 1_3:-28811802 | None:intergenic |
| TGCAAGAATTGCTGGAAAGA+GGG | 0.545638 | 1_3:+28807857 | Msa0113110:CDS |
| TGATAAGCATCATAGAGACT+TGG | 0.549432 | 1_3:-28810064 | None:intergenic |
| TGGAAATGGGAAAATCTTGG+AGG | 0.550107 | 1_3:+28807758 | Msa0113110:CDS |
| CGGGAGCTTGTTCTTTCCCG+TGG | 0.557716 | 1_3:+28809905 | Msa0113110:CDS |
| TGAAGCATATAAAGATGCGT+TGG | 0.558373 | 1_3:+28807377 | Msa0113110:CDS |
| TTAGATCTCTGGGTTTAGGA+AGG | 0.566951 | 1_3:-28809553 | None:intergenic |
| GGTCTGGTTGTTCATGATGC+CGG | 0.567676 | 1_3:+28811730 | Msa0113110:CDS |
| TTGAACTGATAACTTATCTG+AGG | 0.568259 | 1_3:+28812282 | Msa0113110:exon |
| TAGAACAAAAGGTTTGATGG+TGG | 0.570948 | 1_3:-28807187 | None:intergenic |
| CAGATAAGTTATCAGTTCAA+AGG | 0.571098 | 1_3:-28812279 | None:intergenic |
| TCAACGTTTCTAGTAATCTG+TGG | 0.572578 | 1_3:-28807357 | None:intergenic |
| GGGATCGATTATTATCATGC+CGG | 0.581743 | 1_3:+28809524 | Msa0113110:CDS |
| GATAAGCATCATAGAGACTT+GGG | 0.588452 | 1_3:-28810063 | None:intergenic |
| GGCCATCAAACAACCGCATG+TGG | 0.590295 | 1_3:-28812258 | None:intergenic |
| GTGACAGGTGTCAAAACCAA+TGG | 0.593225 | 1_3:+28809992 | Msa0113110:CDS |
| TTTGCTATAAGTGATCTCCC+TGG | 0.595091 | 1_3:-28809947 | None:intergenic |
| CACTGAGCAAAATCAGACAC+GGG | 0.595236 | 1_3:+28812221 | Msa0113110:CDS |
| TCTACACTGTGAAGGTCGCA+AGG | 0.597206 | 1_3:+28807281 | Msa0113110:CDS |
| GTGCTGGATTTGATCCCACA+AGG | 0.598718 | 1_3:+28807526 | Msa0113110:CDS |
| CATATAAAGATGCGTTGGAA+GGG | 0.598779 | 1_3:+28807382 | Msa0113110:CDS |
| TCCCTGTGGCAACATAAGGA+TGG | 0.603229 | 1_3:-28809030 | None:intergenic |
| AAATATCACATTCTTGAGCA+AGG | 0.605301 | 1_3:-28812339 | None:intergenic |
| GTGTGTGCCTACCATAGTGA+TGG | 0.609804 | 1_3:-28807067 | None:intergenic |
| GGGTTTAGGAAGGACAGCAC+CGG | 0.612449 | 1_3:-28809543 | None:intergenic |
| TTAGAAATGAGAAGCTGCAG+TGG | 0.616652 | 1_3:+28809074 | Msa0113110:CDS |
| GTTGATTATTTGAATATCGG+TGG | 0.616729 | 1_3:+28809494 | Msa0113110:CDS |
| CAATGATGAGTTTAAGACCA+CGG | 0.620749 | 1_3:-28809922 | None:intergenic |
| TCACATTCTTGAGCAAGGAA+AGG | 0.622246 | 1_3:-28812334 | None:intergenic |
| GATGGCTATCTACACTGTGA+AGG | 0.629449 | 1_3:+28807273 | Msa0113110:CDS |
| GGTTGATCCAAGATGACAGT+GGG | 0.631080 | 1_3:-28809146 | None:intergenic |
| AGAACTTCCAACTCCTGCCA+AGG | 0.636769 | 1_3:+28811183 | Msa0113110:CDS |
| TTTAGAGTTCTTATTCCCTG+TGG | 0.638479 | 1_3:-28809044 | None:intergenic |
| TGTAATCTCAGCAGTTGCTG+GGG | 0.639230 | 1_3:-28811104 | None:intergenic |
| CTACAAGCTTTAGCTCAACA+GGG | 0.648489 | 1_3:-28809120 | None:intergenic |
| TCCATCCTTATGTTGCCACA+GGG | 0.649172 | 1_3:+28809029 | Msa0113110:CDS |
| CATACTCATACAATAAGCAC+CGG | 0.650287 | 1_3:-28811749 | None:intergenic |
| TCACTGAGCAAAATCAGACA+CGG | 0.653042 | 1_3:+28812220 | Msa0113110:CDS |
| AATCTGCAGACTCACAAACA+GGG | 0.656316 | 1_3:-28811144 | None:intergenic |
| TCTTGGATCAACCATTACCA+AGG | 0.656897 | 1_3:+28809156 | Msa0113110:CDS |
| ACAAAACAATCATAAAACGA+GGG | 0.669738 | 1_3:+28807025 | Msa0113110:five_prime_UTR |
| GTACATACCCAATACTCTGG+AGG | 0.674644 | 1_3:-28811799 | None:intergenic |
| GTTTGATTTGGAAAACATTG+TGG | 0.675214 | 1_3:+28807830 | Msa0113110:CDS |
| AACAAAACAATCATAAAACG+AGG | 0.676160 | 1_3:+28807024 | Msa0113110:five_prime_UTR |
| TGTTGAGCTAAAGCTTGTAG+GGG | 0.694178 | 1_3:+28809123 | Msa0113110:CDS |
| AGACATTCGAAGACCACATG+CGG | 0.704722 | 1_3:+28812245 | Msa0113110:CDS |
| TTAAACTCATCATTGAACCA+GGG | 0.707762 | 1_3:+28809930 | Msa0113110:CDS |
| AAGCATCATAGAGACTTGGG+CGG | 0.714237 | 1_3:-28810060 | None:intergenic |
| ACACTGTGAAGGTCGCAAGG+TGG | 0.722931 | 1_3:+28807284 | Msa0113110:CDS |
| TGGTTGATCCAAGATGACAG+TGG | 0.759149 | 1_3:-28809147 | None:intergenic |
| ACTGAGCAAAATCAGACACG+GGG | 0.760085 | 1_3:+28812222 | Msa0113110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTTATGTTTTTTTTT+TGG | - | chr1_3:28807011-28807030 | None:intergenic | 10.0% |
| !!! | TAATAATAATTACAAGATTT+TGG | + | chr1_3:28807437-28807456 | Msa0113110:CDS | 10.0% |
| !! | AAAAAAATAATCAATTAGCA+GGG | - | chr1_3:28809869-28809888 | None:intergenic | 15.0% |
| !! | TAAAAAAATAATCAATTAGC+AGG | - | chr1_3:28809870-28809889 | None:intergenic | 15.0% |
| !!! | GCTAATTGATTATTTTTTTA+CGG | + | chr1_3:28809870-28809889 | Msa0113110:intron | 15.0% |
| !!! | CTCAATGTTTTAATATTTTA+TGG | + | chr1_3:28810230-28810249 | Msa0113110:intron | 15.0% |
| !!! | CTTTTTCAATGAATATTTTA+TGG | + | chr1_3:28810844-28810863 | Msa0113110:intron | 15.0% |
| !!! | TATTATTGGTTATGCTATTA+AGG | + | chr1_3:28807413-28807432 | Msa0113110:CDS | 20.0% |
| !! | TTTACTTGATTATATCAAAC+TGG | + | chr1_3:28807589-28807608 | Msa0113110:intron | 20.0% |
| !!! | TAGTTTTTCAATGGAATTAT+TGG | + | chr1_3:28807634-28807653 | Msa0113110:intron | 20.0% |
| !!! | TATTGGTTTGTTTAATTGAT+TGG | + | chr1_3:28807651-28807670 | Msa0113110:intron | 20.0% |
| !! | TGATTTATTTATGAGATTCT+TGG | + | chr1_3:28807692-28807711 | Msa0113110:intron | 20.0% |
| !! | TTAAACATTTATTTGTCCTA+TGG | - | chr1_3:28808087-28808106 | None:intergenic | 20.0% |
| !! | AAAAATCTTCAATTTCTTCT+AGG | - | chr1_3:28808172-28808191 | None:intergenic | 20.0% |
| !! | AAATTTATCTCAAAAGAAGT+GGG | - | chr1_3:28808597-28808616 | None:intergenic | 20.0% |
| !! | AAAATTTATCTCAAAAGAAG+TGG | - | chr1_3:28808598-28808617 | None:intergenic | 20.0% |
| !!! | TTGCTTGTGAATTATTTTTT+AGG | - | chr1_3:28808757-28808776 | None:intergenic | 20.0% |
| !!! | AATGATCTTATTTATTCCTA+TGG | + | chr1_3:28808775-28808794 | Msa0113110:intron | 20.0% |
| !! | TCAATTTCATCAATTACATT+GGG | + | chr1_3:28808842-28808861 | Msa0113110:intron | 20.0% |
| !! | TATTGTGCATTTATTACTTT+AGG | + | chr1_3:28809265-28809284 | Msa0113110:intron | 20.0% |
| !!! | GAAGTTGATTATTTGAATAT+CGG | + | chr1_3:28809491-28809510 | Msa0113110:CDS | 20.0% |
| !!! | ACAAATTTAATTGTTCTGAA+GGG | - | chr1_3:28809753-28809772 | None:intergenic | 20.0% |
| !! | TACAAATTTAATTGTTCTGA+AGG | - | chr1_3:28809754-28809773 | None:intergenic | 20.0% |
| !!! | ATTGATTATTTTTTTACGGT+TGG | + | chr1_3:28809874-28809893 | Msa0113110:intron | 20.0% |
| !!! | TTAATATTTTATGGTTTCGT+TGG | + | chr1_3:28810239-28810258 | Msa0113110:intron | 20.0% |
| !!! | TAATATTTTATGGTTTCGTT+GGG | + | chr1_3:28810240-28810259 | Msa0113110:intron | 20.0% |
| !!! | TTATTGATGATTTATGATTG+AGG | + | chr1_3:28810333-28810352 | Msa0113110:intron | 20.0% |
| !!! | TCAATGAATATTTTATGGTT+TGG | + | chr1_3:28810849-28810868 | Msa0113110:intron | 20.0% |
| !! | TTAGAATCAAGTAACTAAAA+TGG | - | chr1_3:28810987-28811006 | None:intergenic | 20.0% |
| !!! | CAAAATGATTCCTTTTAAAA+TGG | - | chr1_3:28811920-28811939 | None:intergenic | 20.0% |
| !!! | AATAATGTTTTTTCAAGCAA+AGG | - | chr1_3:28812097-28812116 | None:intergenic | 20.0% |
| !! | AAAGAAAAGACAAATATAGA+TGG | - | chr1_3:28812126-28812145 | None:intergenic | 20.0% |
| !! | GATTTCTTGTATAATATTTC+AGG | + | chr1_3:28812183-28812202 | Msa0113110:intron | 20.0% |
| !! | TTACATTCTAAATTGTCAAT+TGG | - | chr1_3:28812518-28812537 | None:intergenic | 20.0% |
| !!! | ATGTAAGCTCATTTTTAATA+AGG | + | chr1_3:28812532-28812551 | Msa0113110:three_prime_UTR | 20.0% |
| ! | AACAAAACAATCATAAAACG+AGG | + | chr1_3:28807024-28807043 | Msa0113110:five_prime_UTR | 25.0% |
| ! | ACAAAACAATCATAAAACGA+GGG | + | chr1_3:28807025-28807044 | Msa0113110:five_prime_UTR | 25.0% |
| !!! | TGTTTGTGTTAGTTTTTCAA+TGG | + | chr1_3:28807625-28807644 | Msa0113110:intron | 25.0% |
| ! | TTGTTTAATTGATTGGAGTT+TGG | + | chr1_3:28807658-28807677 | Msa0113110:intron | 25.0% |
| !!! | TATTCCATATTTTAGCTACT+AGG | + | chr1_3:28808119-28808138 | Msa0113110:intron | 25.0% |
| ! | TATGTTTCACATATTTCTCT+TGG | + | chr1_3:28808216-28808235 | Msa0113110:intron | 25.0% |
| ! | ATATTTCTCTTGGTTATTGT+TGG | + | chr1_3:28808226-28808245 | Msa0113110:intron | 25.0% |
| ! | AATTTATCTCAAAAGAAGTG+GGG | - | chr1_3:28808596-28808615 | None:intergenic | 25.0% |
| !! | TTGAGATAAATTTTGTACGT+AGG | + | chr1_3:28808604-28808623 | Msa0113110:intron | 25.0% |
| !!! | TGTGAATTATTTTTTAGGCA+AGG | - | chr1_3:28808752-28808771 | None:intergenic | 25.0% |
| ! | CAATGTAATTGATGAAATTG+AGG | - | chr1_3:28808843-28808862 | None:intergenic | 25.0% |
| ! | CTCAATTTCATCAATTACAT+TGG | + | chr1_3:28808841-28808860 | Msa0113110:intron | 25.0% |
| !! | AGAGAAAAAGTTTTTGATGA+AGG | - | chr1_3:28808892-28808911 | None:intergenic | 25.0% |
| ! | ATAAACCAAAACATAAACCA+TGG | - | chr1_3:28808962-28808981 | None:intergenic | 25.0% |
| !! | TTTTTATCTTTGTCATCCTT+AGG | + | chr1_3:28809006-28809025 | Msa0113110:intron | 25.0% |
| !! | CAGAAAAGTAAAGACTTTTA+AGG | - | chr1_3:28809186-28809205 | None:intergenic | 25.0% |
| ! | TGATCCATTTATATGTTGAT+AGG | + | chr1_3:28809322-28809341 | Msa0113110:intron | 25.0% |
| ! | GATCCATTTATATGTTGATA+GGG | + | chr1_3:28809323-28809342 | Msa0113110:intron | 25.0% |
| !!! | TCATAATATAAGTGCTGAAA+TGG | + | chr1_3:28809383-28809402 | Msa0113110:intron | 25.0% |
| ! | AATATAGTTGACCATAATAG+TGG | - | chr1_3:28809447-28809466 | None:intergenic | 25.0% |
| ! | TGTGATTAAGTTTGTAATTC+TGG | + | chr1_3:28809626-28809645 | Msa0113110:intron | 25.0% |
| !!! | AATGAAGTTTTTAGAACCAT+TGG | - | chr1_3:28810011-28810030 | None:intergenic | 25.0% |
| ! | AAAAACTTCATTGTGATTGA+TGG | + | chr1_3:28810019-28810038 | Msa0113110:CDS | 25.0% |
| ! | AGTGTGTATAATGATTATGA+TGG | + | chr1_3:28810134-28810153 | Msa0113110:intron | 25.0% |
| !!! | CTGTTTTATTCTTTTTTCTC+TGG | - | chr1_3:28810293-28810312 | None:intergenic | 25.0% |
| ! | TGTTAATTGTAAGAATGAGT+AGG | - | chr1_3:28810435-28810454 | None:intergenic | 25.0% |
| ! | TTTACACTTCCACTATTTAA+GGG | - | chr1_3:28810492-28810511 | None:intergenic | 25.0% |
| ! | ATTTACACTTCCACTATTTA+AGG | - | chr1_3:28810493-28810512 | None:intergenic | 25.0% |
| !!! | TGAATATTTTATGGTTTGGT+TGG | + | chr1_3:28810853-28810872 | Msa0113110:intron | 25.0% |
| !!! | GAATATTTTATGGTTTGGTT+GGG | + | chr1_3:28810854-28810873 | Msa0113110:intron | 25.0% |
| ! | ATGTTGTGTTAACATTAACT+GGG | - | chr1_3:28810898-28810917 | None:intergenic | 25.0% |
| ! | AATAGTTGCACAAATAATAC+AGG | + | chr1_3:28811233-28811252 | Msa0113110:intron | 25.0% |
| !! | TAATTTGAGTTTCATTTGCA+GGG | + | chr1_3:28811703-28811722 | Msa0113110:intron | 25.0% |
| !! | TTTAGCAGAACCATTTTAAA+AGG | + | chr1_3:28811907-28811926 | Msa0113110:intron | 25.0% |
| !!! | ATTAGCTTTTTTGTTTGCAA+TGG | + | chr1_3:28812055-28812074 | Msa0113110:intron | 25.0% |
| !! | CAAGAAATCATTCTTTAAGA+CGG | - | chr1_3:28812172-28812191 | None:intergenic | 25.0% |
| !!! | CTTGAGATTTGTTGTATTTT+GGG | + | chr1_3:28812305-28812324 | Msa0113110:three_prime_UTR | 25.0% |
| !! | TTTGGTTGTTTTGTCGAAAA+GGG | - | chr1_3:28806993-28807012 | None:intergenic | 30.0% |
| !! | TTTTGGTTGTTTTGTCGAAA+AGG | - | chr1_3:28806994-28807013 | None:intergenic | 30.0% |
| ! | AATGAGTGATTGAAGGTTTT+GGG | - | chr1_3:28807117-28807136 | None:intergenic | 30.0% |
| !! | GTCAAAATTAGTGCTTTTTG+TGG | - | chr1_3:28807232-28807251 | None:intergenic | 30.0% |
| GGCTTACTGTATAGATAAAA+AGG | - | chr1_3:28807339-28807358 | None:intergenic | 30.0% | |
| GAAGGGTTAACATCTATTAT+TGG | + | chr1_3:28807399-28807418 | Msa0113110:CDS | 30.0% | |
| CTTGATTATATCAAACTGGT+TGG | + | chr1_3:28807593-28807612 | Msa0113110:intron | 30.0% | |
| !! | GAGATTCTTGGTGTATTTTT+CGG | + | chr1_3:28807704-28807723 | Msa0113110:intron | 30.0% |
| !! | TTTTTCGGTCACTGTATTAA+TGG | + | chr1_3:28807719-28807738 | Msa0113110:intron | 30.0% |
| ATGGATAGGTGTATCTTTAA+TGG | + | chr1_3:28807738-28807757 | Msa0113110:intron | 30.0% | |
| AGGTGTATCTTTAATGGAAA+TGG | + | chr1_3:28807744-28807763 | Msa0113110:intron | 30.0% | |
| GGTGTATCTTTAATGGAAAT+GGG | + | chr1_3:28807745-28807764 | Msa0113110:intron | 30.0% | |
| TAATGGAAATGGGAAAATCT+TGG | + | chr1_3:28807755-28807774 | Msa0113110:CDS | 30.0% | |
| !! | GTTTGATTTGGAAAACATTG+TGG | + | chr1_3:28807830-28807849 | Msa0113110:CDS | 30.0% |
| ACTAAGAATCAATATACCTG+CGG | - | chr1_3:28807918-28807937 | None:intergenic | 30.0% | |
| CAATCCTAGTAGCTAAAATA+TGG | - | chr1_3:28808126-28808145 | None:intergenic | 30.0% | |
| CATAGCTTAGATGAATATCA+TGG | - | chr1_3:28808200-28808219 | None:intergenic | 30.0% | |
| CTTGGTTATTGTTGGAAAAT+TGG | + | chr1_3:28808234-28808253 | Msa0113110:intron | 30.0% | |
| TAATAAAATCTGCATCACTG+TGG | - | chr1_3:28808428-28808447 | None:intergenic | 30.0% | |
| ATTCAGAAATCATAGTGCAA+GGG | - | chr1_3:28808533-28808552 | None:intergenic | 30.0% | |
| AATTCAGAAATCATAGTGCA+AGG | - | chr1_3:28808534-28808553 | None:intergenic | 30.0% | |
| TGCACTATGATTTCTGAATT+TGG | + | chr1_3:28808534-28808553 | Msa0113110:intron | 30.0% | |
| ATTTATCTCAAAAGAAGTGG+GGG | - | chr1_3:28808595-28808614 | None:intergenic | 30.0% | |
| ! | ATTTTTATGTTGCTCCTACT+TGG | + | chr1_3:28808688-28808707 | Msa0113110:intron | 30.0% |
| ! | TTTTTATGTTGCTCCTACTT+GGG | + | chr1_3:28808689-28808708 | Msa0113110:intron | 30.0% |
| ATTAAAAGTTCAACCCAAGT+AGG | - | chr1_3:28808705-28808724 | None:intergenic | 30.0% | |
| GAAACGTTATTGCATTTCTT+CGG | - | chr1_3:28808730-28808749 | None:intergenic | 30.0% | |
| GGGAATAAGAACTCTAAATT+TGG | + | chr1_3:28809049-28809068 | Msa0113110:CDS | 30.0% | |
| TTTAAGGATAACCTTGGTAA+TGG | - | chr1_3:28809170-28809189 | None:intergenic | 30.0% | |
| !! | AAGACTTTTAAGGATAACCT+TGG | - | chr1_3:28809176-28809195 | None:intergenic | 30.0% |
| AGACCCTATCAACATATAAA+TGG | - | chr1_3:28809329-28809348 | None:intergenic | 30.0% | |
| AAAATATCTACCTGGAAAGA+GGG | - | chr1_3:28809413-28809432 | None:intergenic | 30.0% | |
| ! | TTTCCAGGTAGATATTTTCA+GGG | + | chr1_3:28809415-28809434 | Msa0113110:intron | 30.0% |
| GTTGATTATTTGAATATCGG+TGG | + | chr1_3:28809494-28809513 | Msa0113110:CDS | 30.0% | |
| ACAGTATCAATTAGATCTCT+GGG | - | chr1_3:28809566-28809585 | None:intergenic | 30.0% | |
| GTAATTCTGGTACAAGAATA+AGG | + | chr1_3:28809639-28809658 | Msa0113110:intron | 30.0% | |
| TAAGGAATACCACTGATAAA+TGG | + | chr1_3:28809657-28809676 | Msa0113110:intron | 30.0% | |
| AAGGAATACCACTGATAAAT+GGG | + | chr1_3:28809658-28809677 | Msa0113110:intron | 30.0% | |
| TAAGAATTCCCATTTATCAG+TGG | - | chr1_3:28809669-28809688 | None:intergenic | 30.0% | |
| !!! | TATTTTTTTACGGTTGGAGT+AGG | + | chr1_3:28809880-28809899 | Msa0113110:intron | 30.0% |
| TTAAACTCATCATTGAACCA+GGG | + | chr1_3:28809930-28809949 | Msa0113110:CDS | 30.0% | |
| !! | ATTATGATGGATTCCTATGA+AGG | + | chr1_3:28810147-28810166 | Msa0113110:intron | 30.0% |
| TTGAGGAAAATTACAGAGTT+AGG | + | chr1_3:28810350-28810369 | Msa0113110:intron | 30.0% | |
| TGAGGAAAATTACAGAGTTA+GGG | + | chr1_3:28810351-28810370 | Msa0113110:intron | 30.0% | |
| TTACACTTCCACTATTTAAG+GGG | - | chr1_3:28810491-28810510 | None:intergenic | 30.0% | |
| ! | TTATTCTAGAAGGGGTAAAA+AGG | - | chr1_3:28810569-28810588 | None:intergenic | 30.0% |
| ATTCGTTATCAGCATTTGTT+AGG | - | chr1_3:28810666-28810685 | None:intergenic | 30.0% | |
| TTAACTGGGTTCACTTTAAT+TGG | - | chr1_3:28810884-28810903 | None:intergenic | 30.0% | |
| GATGTTGTGTTAACATTAAC+TGG | - | chr1_3:28810899-28810918 | None:intergenic | 30.0% | |
| ATTGCATTGTAAGAAGTTGT+TGG | + | chr1_3:28810942-28810961 | Msa0113110:intron | 30.0% | |
| ! | TTTTATGCAGCATATAGAAC+TGG | + | chr1_3:28811072-28811091 | Msa0113110:intron | 30.0% |
| ! | ATTACAGCTTTTGATGTAGT+CGG | + | chr1_3:28811121-28811140 | Msa0113110:CDS | 30.0% |
| ATCAATACATCATAGTACCT+TGG | - | chr1_3:28811203-28811222 | None:intergenic | 30.0% | |
| ! | ATGTCAGTGTTGTTAAATAG+CGG | + | chr1_3:28811284-28811303 | Msa0113110:intron | 30.0% |
| TTGTCAAATAGCAACTCTAA+TGG | + | chr1_3:28811378-28811397 | Msa0113110:intron | 30.0% | |
| AATTCAACGTTGTCAAATAG+CGG | + | chr1_3:28811478-28811497 | Msa0113110:intron | 30.0% | |
| TTCTCAACATTGGATAATGA+TGG | + | chr1_3:28811647-28811666 | Msa0113110:intron | 30.0% | |
| ! | CAACATCACAAACTTGTTTA+AGG | + | chr1_3:28811670-28811689 | Msa0113110:intron | 30.0% |
| ! | CTAATTTGAGTTTCATTTGC+AGG | + | chr1_3:28811702-28811721 | Msa0113110:intron | 30.0% |
| ! | GCTTTTCTAAATCTCTTCTT+AGG | + | chr1_3:28811943-28811962 | Msa0113110:intron | 30.0% |
| ! | TTTAAGACGGCAAATATTGA+TGG | - | chr1_3:28812159-28812178 | None:intergenic | 30.0% |
| !! | ATATTTCAGGTTGAAGATGA+TGG | + | chr1_3:28812196-28812215 | Msa0113110:intron | 30.0% |
| CAGATAAGTTATCAGTTCAA+AGG | - | chr1_3:28812282-28812301 | None:intergenic | 30.0% | |
| TTGAACTGATAACTTATCTG+AGG | + | chr1_3:28812282-28812301 | Msa0113110:exon | 30.0% | |
| !!! | GCTTGAGATTTGTTGTATTT+TGG | + | chr1_3:28812304-28812323 | Msa0113110:three_prime_UTR | 30.0% |
| !!! | GATTTGTTGTATTTTGGGTT+TGG | + | chr1_3:28812310-28812329 | Msa0113110:three_prime_UTR | 30.0% |
| AAATATCACATTCTTGAGCA+AGG | - | chr1_3:28812342-28812361 | None:intergenic | 30.0% | |
| ! | TGCTCAAGAATGTGATATTT+TGG | + | chr1_3:28812342-28812361 | Msa0113110:three_prime_UTR | 30.0% |
| !! | ATTGTGTTGCTTATGTATGA+TGG | + | chr1_3:28812468-28812487 | Msa0113110:three_prime_UTR | 30.0% |
| ! | GAATGAGTGATTGAAGGTTT+TGG | - | chr1_3:28807118-28807137 | None:intergenic | 35.0% |
| TTTGGTGAATGAGTGATTGA+AGG | - | chr1_3:28807124-28807143 | None:intergenic | 35.0% | |
| !! | AAAAGGTTTGATGGTGGATT+TGG | - | chr1_3:28807184-28807203 | None:intergenic | 35.0% |
| TAGAACAAAAGGTTTGATGG+TGG | - | chr1_3:28807190-28807209 | None:intergenic | 35.0% | |
| GGATAGAACAAAAGGTTTGA+TGG | - | chr1_3:28807193-28807212 | None:intergenic | 35.0% | |
| !! | TTAGTGCTTTTTGTGGTTTC+TGG | - | chr1_3:28807225-28807244 | None:intergenic | 35.0% |
| !! | CTTCGGATTTGTTGAAACAA+TGG | - | chr1_3:28807254-28807273 | None:intergenic | 35.0% |
| TGTTTCAACAAATCCGAAGA+TGG | + | chr1_3:28807255-28807274 | Msa0113110:CDS | 35.0% | |
| !! | TCAACGTTTCTAGTAATCTG+TGG | - | chr1_3:28807360-28807379 | None:intergenic | 35.0% |
| TGAAGCATATAAAGATGCGT+TGG | + | chr1_3:28807377-28807396 | Msa0113110:CDS | 35.0% | |
| CATATAAAGATGCGTTGGAA+GGG | + | chr1_3:28807382-28807401 | Msa0113110:CDS | 35.0% | |
| CATTGACAGTGAGTTTGATT+TGG | + | chr1_3:28807818-28807837 | Msa0113110:CDS | 35.0% | |
| AGTTTGATGCATACATCTTG+TGG | + | chr1_3:28807956-28807975 | Msa0113110:intron | 35.0% | |
| TTTAGCTACTAGGATTGATG+AGG | + | chr1_3:28808129-28808148 | Msa0113110:intron | 35.0% | |
| ! | TATTGTTGGAAAATTGGCTC+CGG | + | chr1_3:28808240-28808259 | Msa0113110:intron | 35.0% |
| AAATTCCATTAGTGCTTGGA+GGG | + | chr1_3:28808263-28808282 | Msa0113110:intron | 35.0% | |
| ! | CATAAGATGCTCCATTTTGA+AGG | - | chr1_3:28808340-28808359 | None:intergenic | 35.0% |
| ! | CTTCAAAATGGAGCATCTTA+TGG | + | chr1_3:28808338-28808357 | Msa0113110:intron | 35.0% |
| !! | TTGACCTGATTTTGAAGACT+TGG | + | chr1_3:28808373-28808392 | Msa0113110:intron | 35.0% |
| ATGTGCGCTAGTATGTAAAT+AGG | - | chr1_3:28808667-28808686 | None:intergenic | 35.0% | |
| CTCTGCAGAATAAATACCAT+AGG | - | chr1_3:28808794-28808813 | None:intergenic | 35.0% | |
| ATGGTATTTATTCTGCAGAG+TGG | + | chr1_3:28808794-28808813 | Msa0113110:intron | 35.0% | |
| TGGTATTTATTCTGCAGAGT+GGG | + | chr1_3:28808795-28808814 | Msa0113110:intron | 35.0% | |
| !! | ATTGATTGCTTTGAGATGTC+TGG | + | chr1_3:28808919-28808938 | Msa0113110:intron | 35.0% |
| ATTTCTAACTCTCATTGCCA+TGG | + | chr1_3:28808942-28808961 | Msa0113110:intron | 35.0% | |
| ! | CATTGCCATGGTTTATGTTT+TGG | + | chr1_3:28808954-28808973 | Msa0113110:intron | 35.0% |
| ! | TTTAGAGTTCTTATTCCCTG+TGG | - | chr1_3:28809047-28809066 | None:intergenic | 35.0% |
| ATCTTGTGCGTTATCACTTT+GGG | + | chr1_3:28809210-28809229 | Msa0113110:intron | 35.0% | |
| AAATATCTACCTGGAAAGAG+GGG | - | chr1_3:28809412-28809431 | None:intergenic | 35.0% | |
| GAAAATATCTACCTGGAAAG+AGG | - | chr1_3:28809414-28809433 | None:intergenic | 35.0% | |
| ! | CTTTCCAGGTAGATATTTTC+AGG | + | chr1_3:28809414-28809433 | Msa0113110:intron | 35.0% |
| GATTATTTGAATATCGGTGG+TGG | + | chr1_3:28809497-28809516 | Msa0113110:CDS | 35.0% | |
| TCAATTAGATCTCTGGGTTT+AGG | - | chr1_3:28809560-28809579 | None:intergenic | 35.0% | |
| CACAGTATCAATTAGATCTC+TGG | - | chr1_3:28809567-28809586 | None:intergenic | 35.0% | |
| GAGATCTAATTGATACTGTG+AGG | + | chr1_3:28809567-28809586 | Msa0113110:intron | 35.0% | |
| TGCATGTCACAGTTACAAAA+TGG | - | chr1_3:28809711-28809730 | None:intergenic | 35.0% | |
| ! | ATTTTGTAACTGTGACATGC+AGG | + | chr1_3:28809710-28809729 | Msa0113110:intron | 35.0% |
| ! | TTTTGTAACTGTGACATGCA+GGG | + | chr1_3:28809711-28809730 | Msa0113110:intron | 35.0% |
| ! | AATGATGAGTTTAAGACCAC+GGG | - | chr1_3:28809924-28809943 | None:intergenic | 35.0% |
| ! | CAATGATGAGTTTAAGACCA+CGG | - | chr1_3:28809925-28809944 | None:intergenic | 35.0% |
| CTTAAACTCATCATTGAACC+AGG | + | chr1_3:28809929-28809948 | Msa0113110:CDS | 35.0% | |
| CATTGTGATTGATGGAAGTA+TGG | + | chr1_3:28810027-28810046 | Msa0113110:CDS | 35.0% | |
| GATAAGCATCATAGAGACTT+GGG | - | chr1_3:28810066-28810085 | None:intergenic | 35.0% | |
| TGATAAGCATCATAGAGACT+TGG | - | chr1_3:28810067-28810086 | None:intergenic | 35.0% | |
| AAGTCTCTATGATGCTTATC+AGG | + | chr1_3:28810066-28810085 | Msa0113110:CDS | 35.0% | |
| ACAAGACAAAAGAGACTAAG+AGG | - | chr1_3:28810106-28810125 | None:intergenic | 35.0% | |
| ! | AAGTGTCTAGAATCCTTCAT+AGG | - | chr1_3:28810163-28810182 | None:intergenic | 35.0% |
| GAGGAAAATTACAGAGTTAG+GGG | + | chr1_3:28810352-28810371 | Msa0113110:intron | 35.0% | |
| AATTACAGAGTTAGGGGAAA+TGG | + | chr1_3:28810358-28810377 | Msa0113110:intron | 35.0% | |
| ATTACAGAGTTAGGGGAAAT+GGG | + | chr1_3:28810359-28810378 | Msa0113110:intron | 35.0% | |
| GCAATCATTGATCCATCATA+AGG | - | chr1_3:28810617-28810636 | None:intergenic | 35.0% | |
| ! | TTATCAGCATTTGTTAGGAC+TGG | - | chr1_3:28810661-28810680 | None:intergenic | 35.0% |
| TAAAGTTAGCACAGCAGTAA+AGG | + | chr1_3:28810691-28810710 | Msa0113110:intron | 35.0% | |
| TTGCGTTGTAAAGAAGTTGT+TGG | + | chr1_3:28810728-28810747 | Msa0113110:intron | 35.0% | |
| !! | GAAGTTGTTGGAAGTTGATA+AGG | + | chr1_3:28810740-28810759 | Msa0113110:intron | 35.0% |
| ACACAAACAAAGCAGCATTA+GGG | - | chr1_3:28811015-28811034 | None:intergenic | 35.0% | |
| GCAATACACTATTCAGTACA+AGG | + | chr1_3:28811540-28811559 | Msa0113110:intron | 35.0% | |
| ACAATGCTATAGTACTGTTG+AGG | - | chr1_3:28811582-28811601 | None:intergenic | 35.0% | |
| ACTATAGCATTGTAGCATAG+AGG | + | chr1_3:28811589-28811608 | Msa0113110:intron | 35.0% | |
| CATACTCATACAATAAGCAC+CGG | - | chr1_3:28811752-28811771 | None:intergenic | 35.0% | |
| TTCTCTATAGTACGAGAAAG+CGG | + | chr1_3:28811826-28811845 | Msa0113110:intron | 35.0% | |
| ! | TGCTTGTTACACTTCATAGA+TGG | + | chr1_3:28812018-28812037 | Msa0113110:intron | 35.0% |
| GCTAAACTGAAACTAGAAAG+AGG | - | chr1_3:28812412-28812431 | None:intergenic | 35.0% | |
| ! | GACTTTGGTTTCCATCACTA+TGG | + | chr1_3:28807056-28807075 | Msa0113110:exon | 40.0% |
| TTGGTTTCCATCACTATGGT+AGG | + | chr1_3:28807060-28807079 | Msa0113110:exon | 40.0% | |
| !!! | GTGATTGAAGGTTTTGGGAA+TGG | - | chr1_3:28807112-28807131 | None:intergenic | 40.0% |
| !!! | GTTTTGGGGTAATGGGTTTT+TGG | - | chr1_3:28807142-28807161 | None:intergenic | 40.0% |
| !!! | GAATGAGGTTTTGGGGTAAT+GGG | - | chr1_3:28807149-28807168 | None:intergenic | 40.0% |
| !!! | AGAATGAGGTTTTGGGGTAA+TGG | - | chr1_3:28807150-28807169 | None:intergenic | 40.0% |
| !!! | TGGTGGATTTGGTTTTGAGA+GGG | - | chr1_3:28807173-28807192 | None:intergenic | 40.0% |
| !!! | ATGGTGGATTTGGTTTTGAG+AGG | - | chr1_3:28807174-28807193 | None:intergenic | 40.0% |
| !!! | GGGGTTTTGGATAGAACAAA+AGG | - | chr1_3:28807201-28807220 | None:intergenic | 40.0% |
| !!! | TGCTTTTTGTGGTTTCTGGT+GGG | - | chr1_3:28807221-28807240 | None:intergenic | 40.0% |
| ACAGTGTAGATAGCCATCTT+CGG | - | chr1_3:28807271-28807290 | None:intergenic | 40.0% | |
| GCATATAAAGATGCGTTGGA+AGG | + | chr1_3:28807381-28807400 | Msa0113110:CDS | 40.0% | |
| ! | TTTGGAGCATTTGAGAAGCT+TGG | + | chr1_3:28807455-28807474 | Msa0113110:CDS | 40.0% |
| ! | TTGGAGCATTTGAGAAGCTT+GGG | + | chr1_3:28807456-28807475 | Msa0113110:CDS | 40.0% |
| ! | CGGTCACTGTATTAATGGAT+AGG | + | chr1_3:28807724-28807743 | Msa0113110:intron | 40.0% |
| TGGAAATGGGAAAATCTTGG+AGG | + | chr1_3:28807758-28807777 | Msa0113110:CDS | 40.0% | |
| TGGGAAAATCTTGGAGGATT+TGG | + | chr1_3:28807764-28807783 | Msa0113110:CDS | 40.0% | |
| ! | AATCTTGGAGGATTTGGTCT+TGG | + | chr1_3:28807770-28807789 | Msa0113110:CDS | 40.0% |
| TGCAAGAATTGCTGGAAAGA+GGG | + | chr1_3:28807857-28807876 | Msa0113110:CDS | 40.0% | |
| ! | AGAGGGTGAATGTTTTGCTT+CGG | + | chr1_3:28807874-28807893 | Msa0113110:CDS | 40.0% |
| CTTCTTCGTGTCTGTCTAAA+CGG | - | chr1_3:28808061-28808080 | None:intergenic | 40.0% | |
| AGACACGAAGAAGTTTCCAT+AGG | + | chr1_3:28808068-28808087 | Msa0113110:intron | 40.0% | |
| CCAAGCACTAATGGAATTTC+CGG | - | chr1_3:28808262-28808281 | None:intergenic | 40.0% | |
| GAAATTCCATTAGTGCTTGG+AGG | + | chr1_3:28808262-28808281 | Msa0113110:intron | 40.0% | |
| TCAACTTTCACCATCCTCTT+CGG | + | chr1_3:28808312-28808331 | Msa0113110:intron | 40.0% | |
| AGATATTCCACTTCAAGCGT+TGG | + | chr1_3:28808449-28808468 | Msa0113110:intron | 40.0% | |
| GATATTCCACTTCAAGCGTT+GGG | + | chr1_3:28808450-28808469 | Msa0113110:intron | 40.0% | |
| !! | TGACAGCAAAAGTGTTAGAG+AGG | + | chr1_3:28808497-28808516 | Msa0113110:intron | 40.0% |
| TGTACGTAGGCAAGCAAATA+TGG | + | chr1_3:28808617-28808636 | Msa0113110:intron | 40.0% | |
| TGAAGGCAAAAACGAGAAGA+GGG | - | chr1_3:28808875-28808894 | None:intergenic | 40.0% | |
| ATGAAGGCAAAAACGAGAAG+AGG | - | chr1_3:28808876-28808895 | None:intergenic | 40.0% | |
| TTATTCCCTGTGGCAACATA+AGG | - | chr1_3:28809037-28809056 | None:intergenic | 40.0% | |
| TTAGAAATGAGAAGCTGCAG+TGG | + | chr1_3:28809074-28809093 | Msa0113110:CDS | 40.0% | |
| !! | GTGGTTTTTAGATGCTGTCA+AGG | + | chr1_3:28809093-28809112 | Msa0113110:CDS | 40.0% |
| ! | CTACAAGCTTTAGCTCAACA+GGG | - | chr1_3:28809123-28809142 | None:intergenic | 40.0% |
| CTGTTGAGCTAAAGCTTGTA+GGG | + | chr1_3:28809122-28809141 | Msa0113110:CDS | 40.0% | |
| TGTTGAGCTAAAGCTTGTAG+GGG | + | chr1_3:28809123-28809142 | Msa0113110:CDS | 40.0% | |
| TCTTGGATCAACCATTACCA+AGG | + | chr1_3:28809156-28809175 | Msa0113110:CDS | 40.0% | |
| CATCTTGTGCGTTATCACTT+TGG | + | chr1_3:28809209-28809228 | Msa0113110:intron | 40.0% | |
| ! | GTTGATAGGGTCTATTTGCT+CGG | + | chr1_3:28809336-28809355 | Msa0113110:intron | 40.0% |
| CATCCCTGAAAATATCTACC+TGG | - | chr1_3:28809421-28809440 | None:intergenic | 40.0% | |
| !! | GGTAGATATTTTCAGGGATG+CGG | + | chr1_3:28809421-28809440 | Msa0113110:intron | 40.0% |
| TATTGACGAAATTCGAGCTC+AGG | + | chr1_3:28809463-28809482 | Msa0113110:CDS | 40.0% | |
| ATTGACGAAATTCGAGCTCA+GGG | + | chr1_3:28809464-28809483 | Msa0113110:CDS | 40.0% | |
| GGGATCGATTATTATCATGC+CGG | + | chr1_3:28809524-28809543 | Msa0113110:CDS | 40.0% | |
| TTAGATCTCTGGGTTTAGGA+AGG | - | chr1_3:28809556-28809575 | None:intergenic | 40.0% | |
| CACAAGCAGATAGAAAGAAG+CGG | - | chr1_3:28809791-28809810 | None:intergenic | 40.0% | |
| ATCTGCTTGTGAATGTCACA+TGG | + | chr1_3:28809800-28809819 | Msa0113110:intron | 40.0% | |
| ATTAGCAGGGATACTGTGAA+AGG | - | chr1_3:28809856-28809875 | None:intergenic | 40.0% | |
| ! | TTTTACGGTTGGAGTAGGTA+CGG | + | chr1_3:28809885-28809904 | Msa0113110:intron | 40.0% |
| ! | TTTGCTATAAGTGATCTCCC+TGG | - | chr1_3:28809950-28809969 | None:intergenic | 40.0% |
| ! | TTTTCTCTGGTGTGAGTTTC+TGG | - | chr1_3:28810280-28810299 | None:intergenic | 40.0% |
| ! | ACTATTTAAGGGGTGTGAGT+GGG | - | chr1_3:28810481-28810500 | None:intergenic | 40.0% |
| ! | GAAGGGGTAAAAAGGTACAT+GGG | - | chr1_3:28810561-28810580 | None:intergenic | 40.0% |
| ! | AGAAGGGGTAAAAAGGTACA+TGG | - | chr1_3:28810562-28810581 | None:intergenic | 40.0% |
| ! | TGGCAGGTTTATTCTAGAAG+GGG | - | chr1_3:28810577-28810596 | None:intergenic | 40.0% |
| ! | GTGGCAGGTTTATTCTAGAA+GGG | - | chr1_3:28810578-28810597 | None:intergenic | 40.0% |
| TGTGGCAGGTTTATTCTAGA+AGG | - | chr1_3:28810579-28810598 | None:intergenic | 40.0% | |
| AGAATAAACCTGCCACACTT+TGG | + | chr1_3:28810582-28810601 | Msa0113110:intron | 40.0% | |
| GAATAAACCTGCCACACTTT+GGG | + | chr1_3:28810583-28810602 | Msa0113110:intron | 40.0% | |
| TTGATCCATCATAAGGCTGT+GGG | - | chr1_3:28810610-28810629 | None:intergenic | 40.0% | |
| ATTGATCCATCATAAGGCTG+TGG | - | chr1_3:28810611-28810630 | None:intergenic | 40.0% | |
| ! | TGATGGATCAATGATTGCTC+TGG | + | chr1_3:28810619-28810638 | Msa0113110:intron | 40.0% |
| ! | GGACTGGTACTAACAATGAT+GGG | - | chr1_3:28810645-28810664 | None:intergenic | 40.0% |
| ! | AGGACTGGTACTAACAATGA+TGG | - | chr1_3:28810646-28810665 | None:intergenic | 40.0% |
| ACTGCTGTGCTAACTTTAAC+TGG | - | chr1_3:28810689-28810708 | None:intergenic | 40.0% | |
| GACACAAACAAAGCAGCATT+AGG | - | chr1_3:28811016-28811035 | None:intergenic | 40.0% | |
| AATCTGCAGACTCACAAACA+GGG | - | chr1_3:28811147-28811166 | None:intergenic | 40.0% | |
| AAATCTGCAGACTCACAAAC+AGG | - | chr1_3:28811148-28811167 | None:intergenic | 40.0% | |
| TTGTGAGTCTGCAGATTTCT+TGG | + | chr1_3:28811150-28811169 | Msa0113110:CDS | 40.0% | |
| TGTGAGTCTGCAGATTTCTT+GGG | + | chr1_3:28811151-28811170 | Msa0113110:CDS | 40.0% | |
| TCTGCAGATTTCTTGGGAAA+AGG | + | chr1_3:28811157-28811176 | Msa0113110:CDS | 40.0% | |
| ATACATCATAGTACCTTGGC+AGG | - | chr1_3:28811199-28811218 | None:intergenic | 40.0% | |
| CGATCTGCAATTGACAACAT+TGG | + | chr1_3:28811450-28811469 | Msa0113110:intron | 40.0% | |
| CGATCTGCAATTCTCAACAT+TGG | + | chr1_3:28811637-28811656 | Msa0113110:intron | 40.0% | |
| CGGTGCTTATTGTATGAGTA+TGG | + | chr1_3:28811750-28811769 | Msa0113110:CDS | 40.0% | |
| TTCTCGTACTATAGAGAAGC+TGG | - | chr1_3:28811824-28811843 | None:intergenic | 40.0% | |
| TCACTGAGCAAAATCAGACA+CGG | + | chr1_3:28812220-28812239 | Msa0113110:CDS | 40.0% | |
| TCACATTCTTGAGCAAGGAA+AGG | - | chr1_3:28812337-28812356 | None:intergenic | 40.0% | |
| !! | ACGAGGGCTTTGTTTGACTT+TGG | + | chr1_3:28807041-28807060 | Msa0113110:five_prime_UTR | 45.0% |
| GAATGGAACAAGAGTGAGAG+AGG | - | chr1_3:28807095-28807114 | None:intergenic | 45.0% | |
| ! | AGAGGGAGAATGAGGTTTTG+GGG | - | chr1_3:28807156-28807175 | None:intergenic | 45.0% |
| ! | GAGAGGGAGAATGAGGTTTT+GGG | - | chr1_3:28807157-28807176 | None:intergenic | 45.0% |
| ! | TGAGAGGGAGAATGAGGTTT+TGG | - | chr1_3:28807158-28807177 | None:intergenic | 45.0% |
| !!! | TGGTTTTGAGAGGGAGAATG+AGG | - | chr1_3:28807164-28807183 | None:intergenic | 45.0% |
| !!! | GCTTTTTGTGGTTTCTGGTG+GGG | - | chr1_3:28807220-28807239 | None:intergenic | 45.0% |
| !! | GTGCTTTTTGTGGTTTCTGG+TGG | - | chr1_3:28807222-28807241 | None:intergenic | 45.0% |
| GATGGCTATCTACACTGTGA+AGG | + | chr1_3:28807273-28807292 | Msa0113110:CDS | 45.0% | |
| TCGCAAGGTGGATGAGATTA+TGG | + | chr1_3:28807296-28807315 | Msa0113110:CDS | 45.0% | |
| ! | CATTTGAGAAGCTTGGGTTG+TGG | + | chr1_3:28807462-28807481 | Msa0113110:CDS | 45.0% |
| !! | TGTGGTGCTGTTCTTGTTAG+TGG | + | chr1_3:28807480-28807499 | Msa0113110:CDS | 45.0% |
| ! | CTTAAACTTGCTCTTCGTGC+TGG | + | chr1_3:28807510-28807529 | Msa0113110:CDS | 45.0% |
| TGGATTTGATCCCACAAGGT+TGG | + | chr1_3:28807530-28807549 | Msa0113110:intron | 45.0% | |
| CTGCAAGAATTGCTGGAAAG+AGG | + | chr1_3:28807856-28807875 | Msa0113110:CDS | 45.0% | |
| TAATCCTGATGTTGATCCGC+AGG | + | chr1_3:28807899-28807918 | Msa0113110:CDS | 45.0% | |
| TATACCTGCGGATCAACATC+AGG | - | chr1_3:28807906-28807925 | None:intergenic | 45.0% | |
| CCGGAAATTCCATTAGTGCT+TGG | + | chr1_3:28808259-28808278 | Msa0113110:intron | 45.0% | |
| GTGAAAGTTGAGGCTTAGTG+CGG | - | chr1_3:28808303-28808322 | None:intergenic | 45.0% | |
| GAAGAGGATGGTGAAAGTTG+AGG | - | chr1_3:28808313-28808332 | None:intergenic | 45.0% | |
| !! | TTTGAAGGTACCGAAGAGGA+TGG | - | chr1_3:28808325-28808344 | None:intergenic | 45.0% |
| !!! | CCATTTTGAAGGTACCGAAG+AGG | - | chr1_3:28808329-28808348 | None:intergenic | 45.0% |
| CCTCTTCGGTACCTTCAAAA+TGG | + | chr1_3:28808326-28808345 | Msa0113110:intron | 45.0% | |
| TGCGCCAAGTCTTCAAAATC+AGG | - | chr1_3:28808380-28808399 | None:intergenic | 45.0% | |
| !! | TTTTGCTGTCAGACTCGAAG+TGG | - | chr1_3:28808488-28808507 | None:intergenic | 45.0% |
| GTAAATAGGACACCCTAGCA+AGG | - | chr1_3:28808653-28808672 | None:intergenic | 45.0% | |
| GCAACATAAGGATGGACCTA+AGG | - | chr1_3:28809025-28809044 | None:intergenic | 45.0% | |
| TCCATCCTTATGTTGCCACA+GGG | + | chr1_3:28809029-28809048 | Msa0113110:CDS | 45.0% | |
| ! | CCTACAAGCTTTAGCTCAAC+AGG | - | chr1_3:28809124-28809143 | None:intergenic | 45.0% |
| CCTGTTGAGCTAAAGCTTGT+AGG | + | chr1_3:28809121-28809140 | Msa0113110:CDS | 45.0% | |
| GGTTGATCCAAGATGACAGT+GGG | - | chr1_3:28809149-28809168 | None:intergenic | 45.0% | |
| TGGTTGATCCAAGATGACAG+TGG | - | chr1_3:28809150-28809169 | None:intergenic | 45.0% | |
| !! | TTGAATATCGGTGGTGGACT+TGG | + | chr1_3:28809503-28809522 | Msa0113110:CDS | 45.0% |
| !! | TGAATATCGGTGGTGGACTT+GGG | + | chr1_3:28809504-28809523 | Msa0113110:CDS | 45.0% |
| TTTACGGTTGGAGTAGGTAC+GGG | + | chr1_3:28809886-28809905 | Msa0113110:intron | 45.0% | |
| ! | ACACCTGTTGCTTAGTTAGC+CGG | + | chr1_3:28809969-28809988 | Msa0113110:CDS | 45.0% |
| GTGACAGGTGTCAAAACCAA+TGG | + | chr1_3:28809992-28810011 | Msa0113110:CDS | 45.0% | |
| AAGCATCATAGAGACTTGGG+CGG | - | chr1_3:28810063-28810082 | None:intergenic | 45.0% | |
| !! | CTTAGCTCTGGTCAGATCTA+GGG | - | chr1_3:28810388-28810407 | None:intergenic | 45.0% |
| ! | CTATTTAAGGGGTGTGAGTG+GGG | - | chr1_3:28810480-28810499 | None:intergenic | 45.0% |
| ! | CACTATTTAAGGGGTGTGAG+TGG | - | chr1_3:28810482-28810501 | None:intergenic | 45.0% |
| CACTCACACCCCTTAAATAG+TGG | + | chr1_3:28810480-28810499 | Msa0113110:intron | 45.0% | |
| AGTGACGTAGTCAAGTAGCT+TGG | - | chr1_3:28810534-28810553 | None:intergenic | 45.0% | |
| TGATCCATCATAAGGCTGTG+GGG | - | chr1_3:28810609-28810628 | None:intergenic | 45.0% | |
| TGTAATCTCAGCAGTTGCTG+GGG | - | chr1_3:28811107-28811126 | None:intergenic | 45.0% | |
| CTGTAATCTCAGCAGTTGCT+GGG | - | chr1_3:28811108-28811127 | None:intergenic | 45.0% | |
| GAGTTTCATTTGCAGGGTAC+TGG | + | chr1_3:28811709-28811728 | Msa0113110:intron | 45.0% | |
| GTACATACCCAATACTCTGG+AGG | - | chr1_3:28811802-28811821 | None:intergenic | 45.0% | |
| CTGGTACATACCCAATACTC+TGG | - | chr1_3:28811805-28811824 | None:intergenic | 45.0% | |
| CACTGAGCAAAATCAGACAC+GGG | + | chr1_3:28812221-28812240 | Msa0113110:CDS | 45.0% | |
| ACTGAGCAAAATCAGACACG+GGG | + | chr1_3:28812222-28812241 | Msa0113110:CDS | 45.0% | |
| AGACATTCGAAGACCACATG+CGG | + | chr1_3:28812245-28812264 | Msa0113110:CDS | 45.0% | |
| GTGTGTGCCTACCATAGTGA+TGG | - | chr1_3:28807070-28807089 | None:intergenic | 50.0% | |
| !!! | TGTGGTTTCTGGTGGGGTTT+TGG | - | chr1_3:28807214-28807233 | None:intergenic | 50.0% |
| TCTACACTGTGAAGGTCGCA+AGG | + | chr1_3:28807281-28807300 | Msa0113110:CDS | 50.0% | |
| GTGCTGGATTTGATCCCACA+AGG | + | chr1_3:28807526-28807545 | Msa0113110:CDS | 50.0% | |
| GCAAGCTGAACCAACCTTGT+GGG | - | chr1_3:28807543-28807562 | None:intergenic | 50.0% | |
| AGCAAGCTGAACCAACCTTG+TGG | - | chr1_3:28807544-28807563 | None:intergenic | 50.0% | |
| GTTGACAAACACGCCTGCTT+CGG | - | chr1_3:28807799-28807818 | None:intergenic | 50.0% | |
| CTGCATCACTGTGGTTGAAG+AGG | - | chr1_3:28808419-28808438 | None:intergenic | 50.0% | |
| !! | TTCCACTTCAAGCGTTGGGT+AGG | + | chr1_3:28808454-28808473 | Msa0113110:intron | 50.0% |
| !! | TCCACTTCAAGCGTTGGGTA+GGG | + | chr1_3:28808455-28808474 | Msa0113110:intron | 50.0% |
| GTCCATCCTTATGTTGCCAC+AGG | + | chr1_3:28809028-28809047 | Msa0113110:CDS | 50.0% | |
| TCCCTGTGGCAACATAAGGA+TGG | - | chr1_3:28809033-28809052 | None:intergenic | 50.0% | |
| AAATGGTTGCCCCTCTTTCC+AGG | + | chr1_3:28809400-28809419 | Msa0113110:intron | 50.0% | |
| ! | CACCTGTTGCTTAGTTAGCC+GGG | + | chr1_3:28809970-28809989 | Msa0113110:CDS | 50.0% |
| !!! | TGGTTTTGACACCTGTCACC+CGG | - | chr1_3:28809991-28810010 | None:intergenic | 50.0% |
| GAGACTTGGGCGGATAAGTT+CGG | - | chr1_3:28810053-28810072 | None:intergenic | 50.0% | |
| !! | GCTTAGCTCTGGTCAGATCT+AGG | - | chr1_3:28810389-28810408 | None:intergenic | 50.0% |
| GACCAGAGCTAAGCTCCTAT+AGG | + | chr1_3:28810395-28810414 | Msa0113110:intron | 50.0% | |
| AGCCTATAGGAGCTTAGCTC+TGG | - | chr1_3:28810400-28810419 | None:intergenic | 50.0% | |
| !! | GCAGCTCTAAGCTAGCCTAT+AGG | - | chr1_3:28810413-28810432 | None:intergenic | 50.0% |
| !! | TGGGGTTGAGAAGGGTATCT+TGG | - | chr1_3:28810462-28810481 | None:intergenic | 50.0% |
| GCTGTAATCTCAGCAGTTGC+TGG | - | chr1_3:28811109-28811128 | None:intergenic | 50.0% | |
| AGAACTTCCAACTCCTGCCA+AGG | + | chr1_3:28811183-28811202 | Msa0113110:CDS | 50.0% | |
| CATAGTACCTTGGCAGGAGT+TGG | - | chr1_3:28811193-28811212 | None:intergenic | 50.0% | |
| !! | TCATTTGCAGGGTACTGGTC+TGG | + | chr1_3:28811714-28811733 | Msa0113110:intron | 50.0% |
| GGTCTGGTTGTTCATGATGC+CGG | + | chr1_3:28811730-28811749 | Msa0113110:CDS | 50.0% | |
| AGATGCGACCTCCAGAGTAT+TGG | + | chr1_3:28811791-28811810 | Msa0113110:CDS | 50.0% | |
| ! | GATGCGACCTCCAGAGTATT+GGG | + | chr1_3:28811792-28811811 | Msa0113110:CDS | 50.0% |
| GACCACATGCGGTTGTTTGA+TGG | + | chr1_3:28812256-28812275 | Msa0113110:CDS | 50.0% | |
| ACACTGTGAAGGTCGCAAGG+TGG | + | chr1_3:28807284-28807303 | Msa0113110:CDS | 55.0% | |
| GTGGCAGCTGCAAGAATTGC+TGG | + | chr1_3:28807849-28807868 | Msa0113110:CDS | 55.0% | |
| GGGATCCCTCCAAGCACTAA+TGG | - | chr1_3:28808271-28808290 | None:intergenic | 55.0% | |
| GCTTAGTGCGGATCCATGGA+GGG | - | chr1_3:28808291-28808310 | None:intergenic | 55.0% | |
| TGAGGCTTAGTGCGGATCCA+TGG | - | chr1_3:28808295-28808314 | None:intergenic | 55.0% | |
| TCCCTACCCAACGCTTGAAG+TGG | - | chr1_3:28808459-28808478 | None:intergenic | 55.0% | |
| TGGTCGCTCACAACCTTGCT+AGG | + | chr1_3:28808637-28808656 | Msa0113110:intron | 55.0% | |
| GGTCGCTCACAACCTTGCTA+GGG | + | chr1_3:28808638-28808657 | Msa0113110:intron | 55.0% | |
| CAGGGATGCGGCCACTATTA+TGG | + | chr1_3:28809433-28809452 | Msa0113110:CDS | 55.0% | |
| GGGTTTAGGAAGGACAGCAC+CGG | - | chr1_3:28809546-28809565 | None:intergenic | 55.0% | |
| CTGTGACATGCAGGGACATG+AGG | + | chr1_3:28809719-28809738 | Msa0113110:intron | 55.0% | |
| CACCCGGCTAACTAAGCAAC+AGG | - | chr1_3:28809975-28809994 | None:intergenic | 55.0% | |
| TGCTTAGTTAGCCGGGTGAC+AGG | + | chr1_3:28809977-28809996 | Msa0113110:CDS | 55.0% | |
| GGTGTGAGTGGGGTTGAGAA+GGG | - | chr1_3:28810470-28810489 | None:intergenic | 55.0% | |
| GGCCATCAAACAACCGCATG+TGG | - | chr1_3:28812261-28812280 | None:intergenic | 55.0% | |
| !! | TTGGTCTTGGCTGCCGAAGC+AGG | + | chr1_3:28807783-28807802 | Msa0113110:CDS | 60.0% |
| TGCTTGGAGGGATCCCTCCA+TGG | + | chr1_3:28808275-28808294 | Msa0113110:intron | 60.0% | |
| GGCTTAGTGCGGATCCATGG+AGG | - | chr1_3:28808292-28808311 | None:intergenic | 60.0% | |
| !! | TCAAGCGTTGGGTAGGGAGC+AGG | + | chr1_3:28808461-28808480 | Msa0113110:intron | 60.0% |
| GTAGGGGCCCACTGTCATCT+TGG | + | chr1_3:28809139-28809158 | Msa0113110:CDS | 60.0% | |
| ! | CGGGAGCTTGTTCTTTCCCG+TGG | + | chr1_3:28809905-28809924 | Msa0113110:CDS | 60.0% |
| GGGTGTGAGTGGGGTTGAGA+AGG | - | chr1_3:28810471-28810490 | None:intergenic | 60.0% | |
| ! | TGGGCCCCACAGCCTTATGA+TGG | + | chr1_3:28810602-28810621 | Msa0113110:intron | 60.0% |
| ATCTCAGCAGTTGCTGGGGC+AGG | - | chr1_3:28811103-28811122 | None:intergenic | 60.0% | |
| TGTGGGGCCCAAAGTGTGGC+AGG | - | chr1_3:28810593-28810612 | None:intergenic | 65.0% | |
| AGGCTGTGGGGCCCAAAGTG+TGG | - | chr1_3:28810597-28810616 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28806976 | 28812580 | 28806976 | ID=Msa0113110;Name=Msa0113110 |
| chr1_3 | mRNA | 28806976 | 28812580 | 28806976 | ID=Msa0113110-mRNA-1;Parent=Msa0113110;Name=Msa0113110-mRNA-1;_AED=0.11;_eAED=0.11;_QI=99|1|1|1|1|1|8|295|479 |
| chr1_3 | exon | 28806976 | 28807547 | 28806976 | ID=Msa0113110-mRNA-1:exon:9524;Parent=Msa0113110-mRNA-1 |
| chr1_3 | exon | 28807746 | 28807920 | 28807746 | ID=Msa0113110-mRNA-1:exon:9525;Parent=Msa0113110-mRNA-1 |
| chr1_3 | exon | 28809028 | 28809177 | 28809028 | ID=Msa0113110-mRNA-1:exon:9526;Parent=Msa0113110-mRNA-1 |
| chr1_3 | exon | 28809422 | 28809583 | 28809422 | ID=Msa0113110-mRNA-1:exon:9527;Parent=Msa0113110-mRNA-1 |
| chr1_3 | exon | 28809902 | 28810087 | 28809902 | ID=Msa0113110-mRNA-1:exon:9528;Parent=Msa0113110-mRNA-1 |
| chr1_3 | exon | 28811082 | 28811204 | 28811082 | ID=Msa0113110-mRNA-1:exon:9529;Parent=Msa0113110-mRNA-1 |
| chr1_3 | exon | 28811724 | 28811813 | 28811724 | ID=Msa0113110-mRNA-1:exon:9530;Parent=Msa0113110-mRNA-1 |
| chr1_3 | exon | 28812205 | 28812580 | 28812205 | ID=Msa0113110-mRNA-1:exon:9531;Parent=Msa0113110-mRNA-1 |
| chr1_3 | five_prime_UTR | 28806976 | 28807074 | 28806976 | ID=Msa0113110-mRNA-1:five_prime_utr;Parent=Msa0113110-mRNA-1 |
| chr1_3 | CDS | 28807075 | 28807547 | 28807075 | ID=Msa0113110-mRNA-1:cds;Parent=Msa0113110-mRNA-1 |
| chr1_3 | CDS | 28807746 | 28807920 | 28807746 | ID=Msa0113110-mRNA-1:cds;Parent=Msa0113110-mRNA-1 |
| chr1_3 | CDS | 28809028 | 28809177 | 28809028 | ID=Msa0113110-mRNA-1:cds;Parent=Msa0113110-mRNA-1 |
| chr1_3 | CDS | 28809422 | 28809583 | 28809422 | ID=Msa0113110-mRNA-1:cds;Parent=Msa0113110-mRNA-1 |
| chr1_3 | CDS | 28809902 | 28810087 | 28809902 | ID=Msa0113110-mRNA-1:cds;Parent=Msa0113110-mRNA-1 |
| chr1_3 | CDS | 28811082 | 28811204 | 28811082 | ID=Msa0113110-mRNA-1:cds;Parent=Msa0113110-mRNA-1 |
| chr1_3 | CDS | 28811724 | 28811813 | 28811724 | ID=Msa0113110-mRNA-1:cds;Parent=Msa0113110-mRNA-1 |
| chr1_3 | CDS | 28812205 | 28812285 | 28812205 | ID=Msa0113110-mRNA-1:cds;Parent=Msa0113110-mRNA-1 |
| chr1_3 | three_prime_UTR | 28812286 | 28812580 | 28812286 | ID=Msa0113110-mRNA-1:three_prime_utr;Parent=Msa0113110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
