Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068040 | sp|Q949X7|DCDA1_ARATH | 79.498 | 478 | 91 | 3 | 12 | 484 | 9 | 484 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068040 | G7JXL1 | 97.314 | 484 | 12 | 1 | 1 | 484 | 1 | 483 | 0.0 | 967 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020370 | Msa0068040 | 0.858660 | 7.073030e-63 | -8.615850e-47 |
| Msa0068040 | Msa0113110 | 0.839141 | 1.892296e-57 | -8.615850e-47 |
| Msa0068040 | Msa0159400 | 0.902395 | 1.013365e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068040 | MtrunA17_Chr5g0405861 | 97.314 | 484 | 12 | 1 | 1 | 484 | 1 | 483 | 0.0 | 967 |
| Msa0068040 | MtrunA17_Chr3g0143501 | 25.000 | 340 | 227 | 10 | 122 | 449 | 84 | 407 | 8.78e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0068040 | AT3G14390.1 | 79.498 | 478 | 91 | 3 | 12 | 484 | 9 | 484 | 0.0 | 788 |
| Msa0068040 | AT5G11880.1 | 77.459 | 488 | 100 | 4 | 4 | 484 | 5 | 489 | 0.0 | 780 |
Find 156 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGAGATTTGTTGTATTT+TGG | 0.151377 | 1_2:-33536344 | Msa0068040:three_prime_UTR |
| TGCTCAAGAATGTGATATTT+TGG | 0.153172 | 1_2:-33536306 | Msa0068040:three_prime_UTR |
| ATGGATAGGTGTATCTTTAA+TGG | 0.163164 | 1_2:-33540908 | Msa0068040:intron |
| TAATAATAATTACAAAATTT+TGG | 0.181981 | 1_2:-33541207 | Msa0068040:CDS |
| GAGGGAGAATGAGGAGGTTT+TGG | 0.188362 | 1_2:+33541504 | None:intergenic |
| TATTATTGGTTATGCTATTA+AGG | 0.194019 | 1_2:-33541231 | Msa0068040:CDS |
| TGTGGTTTCTGGTGGGGTTT+TGG | 0.196030 | 1_2:+33541433 | None:intergenic |
| GGGAATAAGAACTCTAAATT+TGG | 0.228344 | 1_2:-33539599 | Msa0068040:CDS |
| GAAGGGTTAACATCTATTAT+TGG | 0.248894 | 1_2:-33541245 | Msa0068040:CDS |
| TGGGAAAATCTTGGAGGATT+TGG | 0.271198 | 1_2:-33540882 | Msa0068040:CDS |
| AAAAGGTTTGATGGTGGATT+TGG | 0.281356 | 1_2:+33541475 | None:intergenic |
| AGGTGTATCTTTAATGGAAA+TGG | 0.285155 | 1_2:-33540902 | Msa0068040:CDS |
| CATTGACAGTGAGTTTGATT+TGG | 0.288481 | 1_2:-33540828 | Msa0068040:CDS |
| CATGACAGACATTGCTTTGC+GGG | 0.299279 | 1_2:+33542755 | None:intergenic |
| CAGGGATGCGGCCACTATTA+TGG | 0.309551 | 1_2:-33539215 | Msa0068040:CDS |
| AAACCAGCCAAGAAACAAAA+AGG | 0.310902 | 1_2:-33542188 | Msa0068040:intron |
| CACAGTATCAATTAGATCTC+TGG | 0.317391 | 1_2:+33539084 | None:intergenic |
| TTGAATATCGGTGGTGGACT+TGG | 0.318965 | 1_2:-33539145 | Msa0068040:CDS |
| TCAATTAGATCTCTGGGTTT+AGG | 0.324394 | 1_2:+33539091 | None:intergenic |
| CCTGTTGAGCTAAAGCTTGT+AGG | 0.331964 | 1_2:-33539527 | Msa0068040:CDS |
| TGTGGTGCTGTTCTTGTTAG+TGG | 0.338052 | 1_2:-33541164 | Msa0068040:CDS |
| AAGTCTCTATGATGCTTATC+AGG | 0.346969 | 1_2:-33538582 | Msa0068040:intron |
| TTGTGAGTCTGCAGATTTCT+TGG | 0.348034 | 1_2:-33537498 | Msa0068040:CDS |
| GAAGTTGATTATTTGAATAT+CGG | 0.349143 | 1_2:-33539157 | Msa0068040:CDS |
| CCTACAAGCTTTAGCTCAAC+AGG | 0.349919 | 1_2:+33539527 | None:intergenic |
| GAATGAGTGATTGAAGGTTT+TGG | 0.353491 | 1_2:+33541544 | None:intergenic |
| TCGCAAGGTGGATGAGATTA+TGG | 0.355259 | 1_2:-33541348 | Msa0068040:CDS |
| CGTGAAAGAGAATAGAATTC+AGG | 0.361943 | 1_2:+33542726 | None:intergenic |
| GTTTGGTGCAGCAGAGAAAC+AGG | 0.379519 | 1_2:+33541721 | None:intergenic |
| CTGTTGAGCTAAAGCTTGTA+GGG | 0.386673 | 1_2:-33539526 | Msa0068040:CDS |
| GAGTTTCATTTGCAGGGTAC+TGG | 0.388546 | 1_2:-33536939 | Msa0068040:intron |
| TTGGTCTTGGCTGCCGAAGC+AGG | 0.391605 | 1_2:-33540863 | Msa0068040:CDS |
| CATTGTGATTGATGGAAGTA+TGG | 0.392518 | 1_2:-33538621 | Msa0068040:CDS |
| TAATGGAAATGGGAAAATCT+TGG | 0.395242 | 1_2:-33540891 | Msa0068040:CDS |
| TTATTCCCTGTGGCAACATA+AGG | 0.396444 | 1_2:+33539614 | None:intergenic |
| GGTGTATCTTTAATGGAAAT+GGG | 0.396933 | 1_2:-33540901 | Msa0068040:CDS |
| GGCTTACTGTATAGATAAAA+AGG | 0.403335 | 1_2:+33541308 | None:intergenic |
| GTAGGGGCCCACTGTCATCT+TGG | 0.405310 | 1_2:-33539509 | Msa0068040:CDS |
| GATGCGACCTCCAGAGTATT+GGG | 0.405532 | 1_2:-33536856 | Msa0068040:intron |
| ATCTCAGCATTTGCTGGGGC+TGG | 0.408539 | 1_2:+33537548 | None:intergenic |
| AAATCTGCAGACTCACAAAC+AGG | 0.410971 | 1_2:+33537503 | None:intergenic |
| AATCTTGGAGGATTTGGTCT+TGG | 0.411340 | 1_2:-33540876 | Msa0068040:CDS |
| TCATTTGCAGGGTACTGGTC+TGG | 0.412975 | 1_2:-33536934 | Msa0068040:intron |
| TTGGAGCATTTGAGAAGCTT+GGG | 0.413177 | 1_2:-33541188 | Msa0068040:CDS |
| GGCTCGATTTACAGTGTGTT+TGG | 0.413786 | 1_2:+33541704 | None:intergenic |
| TTACATTCTAAATTGTCAAT+TGG | 0.413892 | 1_2:+33536133 | None:intergenic |
| CGGTGCTTATTGTATGAGTA+TGG | 0.417512 | 1_2:-33536898 | Msa0068040:CDS |
| GACCACATGCGGTTGTTTGA+TGG | 0.417915 | 1_2:-33536392 | Msa0068040:CDS |
| GTGGCAGCTGCAAGAATTGC+TGG | 0.420657 | 1_2:-33540797 | Msa0068040:CDS |
| GTTGTAATCTCAGCATTTGC+TGG | 0.429365 | 1_2:+33537542 | None:intergenic |
| TTTGGAGCATTTGAGAAGCT+TGG | 0.432601 | 1_2:-33541189 | Msa0068040:CDS |
| TTTAAGGATAACCTTGGTAA+TGG | 0.433092 | 1_2:+33539481 | None:intergenic |
| TATTGACGAAATTCGAGCTC+AGG | 0.433675 | 1_2:-33539185 | Msa0068040:CDS |
| ATATTTCAGGTTGAAGATGA+TGG | 0.441114 | 1_2:-33536452 | Msa0068040:intron |
| CTTAAACTCGCTCTTCGTGC+TGG | 0.445679 | 1_2:-33541134 | Msa0068040:CDS |
| TCTGAGAACAAAAGGTTTGA+TGG | 0.449746 | 1_2:+33541466 | None:intergenic |
| ACGAGGGCTTTGTTTGACTT+TGG | 0.450949 | 1_2:-33541618 | Msa0068040:five_prime_UTR |
| TCTGCAGATTTCTTGGGAAA+AGG | 0.451066 | 1_2:-33537491 | Msa0068040:CDS |
| GTTGACAAACACGCCTGCTT+CGG | 0.459688 | 1_2:+33540850 | None:intergenic |
| TGTTTCAACAAATCCGAAGA+TGG | 0.460298 | 1_2:-33541389 | Msa0068040:CDS |
| GTCCATCCTTATGTTGCCAC+AGG | 0.463820 | 1_2:-33539620 | Msa0068040:CDS |
| TGCTTAGTTAGCCGGGTGAC+AGG | 0.464454 | 1_2:-33538671 | Msa0068040:CDS |
| CACCCGGCTAACTAAGCAAC+AGG | 0.470538 | 1_2:+33538676 | None:intergenic |
| ATTGTGTTGCTTATGTATGA+TGG | 0.471012 | 1_2:-33536180 | Msa0068040:three_prime_UTR |
| TGTGAGTCTGCAGATTTCTT+GGG | 0.472848 | 1_2:-33537497 | Msa0068040:CDS |
| ACACCTGTTGCTTAGTTAGC+CGG | 0.475968 | 1_2:-33538679 | Msa0068040:CDS |
| CAACAACAATAAACTGCACC+TGG | 0.476524 | 1_2:-33542780 | Msa0068040:five_prime_UTR |
| AGAACTGCTCTGAGAACAAA+AGG | 0.476863 | 1_2:+33541458 | None:intergenic |
| CTTCGGATTTGTTGAAACAA+TGG | 0.478563 | 1_2:+33541393 | None:intergenic |
| AGATGCGACCTCCAGAGTAT+TGG | 0.480794 | 1_2:-33536857 | Msa0068040:CDS |
| GAGACTTGGGCGGATAAGTT+CGG | 0.487978 | 1_2:+33538598 | None:intergenic |
| CATAGTACCTTGGCAGGAGT+TGG | 0.490280 | 1_2:+33537458 | None:intergenic |
| TTGTAATCTCAGCATTTGCT+GGG | 0.491786 | 1_2:+33537543 | None:intergenic |
| AATATAGTTGACCATAATAG+TGG | 0.493524 | 1_2:+33539204 | None:intergenic |
| CTGCAAGAATTGCTGGAAAG+AGG | 0.494994 | 1_2:-33540790 | Msa0068040:CDS |
| CATTTGAGAAGCTTGGGTTG+TGG | 0.497583 | 1_2:-33541182 | Msa0068040:CDS |
| TATACCTGCGGATCAACATC+AGG | 0.502240 | 1_2:+33540743 | None:intergenic |
| GCAAGCTGAACCAACCTTGT+GGG | 0.502499 | 1_2:+33541104 | None:intergenic |
| ACAGTATCAATTAGATCTCT+GGG | 0.502707 | 1_2:+33539085 | None:intergenic |
| CACCTGTTGCTTAGTTAGCC+GGG | 0.507585 | 1_2:-33538678 | Msa0068040:CDS |
| GTTGTTATTTGCTTAATCAA+AGG | 0.507758 | 1_2:-33542426 | Msa0068040:intron |
| GAATGGAACAAGAGTGAGAG+AGG | 0.515700 | 1_2:+33541567 | None:intergenic |
| TTTGGTGAATGAGTGATTGA+AGG | 0.517249 | 1_2:+33541538 | None:intergenic |
| TGAATATCGGTGGTGGACTT+GGG | 0.519431 | 1_2:-33539144 | Msa0068040:CDS |
| ATACATCATAGTACCTTGGC+AGG | 0.520890 | 1_2:+33537452 | None:intergenic |
| TAATCCTGATGTTGATCCGC+AGG | 0.523562 | 1_2:-33540747 | Msa0068040:intron |
| CTTAAACTCATCATTGAACC+AGG | 0.524711 | 1_2:-33538719 | Msa0068040:CDS |
| GCTAAACTGAAACTAGAAAG+AGG | 0.527006 | 1_2:+33536239 | None:intergenic |
| GATTATTTGAATATCGGTGG+TGG | 0.529387 | 1_2:-33539151 | Msa0068040:CDS |
| AATGATGAGTTTAAGACCAC+GGG | 0.529529 | 1_2:+33538727 | None:intergenic |
| TGAAGCATATAAAGATGCAT+TGG | 0.530975 | 1_2:-33541267 | Msa0068040:CDS |
| GTTTCAACAAATCCGAAGAT+GGG | 0.531477 | 1_2:-33541388 | Msa0068040:CDS |
| ACTTGAAGGAAATTGAAGAA+AGG | 0.532615 | 1_2:+33542701 | None:intergenic |
| ACAGTGTAGATACCCATCTT+CGG | 0.534906 | 1_2:+33541376 | None:intergenic |
| ATTGACGAAATTCGAGCTCA+GGG | 0.537509 | 1_2:-33539184 | Msa0068040:CDS |
| AAGAATGGAAGATTTGAAGC+TGG | 0.538882 | 1_2:+33542468 | None:intergenic |
| CTGGTACATACCCAATACTC+TGG | 0.544316 | 1_2:+33536846 | None:intergenic |
| ACATGACAGACATTGCTTTG+CGG | 0.545373 | 1_2:+33542754 | None:intergenic |
| GACATTGCTTTGCGGGACCC+AGG | 0.545583 | 1_2:+33542762 | None:intergenic |
| TGCAAGAATTGCTGGAAAGA+GGG | 0.545638 | 1_2:-33540789 | Msa0068040:CDS |
| TGATAAGCATCATAGAGACT+TGG | 0.549432 | 1_2:+33538584 | None:intergenic |
| TGGAAATGGGAAAATCTTGG+AGG | 0.550107 | 1_2:-33540888 | Msa0068040:CDS |
| CGGGAGCTTGTTCTTTCCCG+TGG | 0.557716 | 1_2:-33538743 | Msa0068040:CDS |
| GCATATAAAGATGCATTGGA+AGG | 0.560306 | 1_2:-33541263 | Msa0068040:CDS |
| TTGGTTTCCATCACCATGGT+AGG | 0.561645 | 1_2:-33541599 | Msa0068040:exon |
| TTAGATCTCTGGGTTTAGGA+AGG | 0.566951 | 1_2:+33539095 | None:intergenic |
| GGTCTGGTTGTTCATGATGC+CGG | 0.567676 | 1_2:-33536918 | Msa0068040:CDS |
| TTGAACTGATAACTTATCTG+AGG | 0.568259 | 1_2:-33536366 | Msa0068040:exon |
| GACTTTGGTTTCCATCACCA+TGG | 0.570865 | 1_2:-33541603 | Msa0068040:exon |
| CAGATAAGTTATCAGTTCAA+AGG | 0.571098 | 1_2:+33536369 | None:intergenic |
| TCAACGTTTCTAGTAATCTG+TGG | 0.572578 | 1_2:+33541287 | None:intergenic |
| GGGATCGATTATTATCATGC+CGG | 0.581743 | 1_2:-33539124 | Msa0068040:CDS |
| GTGTGTGCCTACCATGGTGA+TGG | 0.585533 | 1_2:+33541592 | None:intergenic |
| TGGAACAAGAGTGAGAGAGG+AGG | 0.586623 | 1_2:+33541570 | None:intergenic |
| GATAAGCATCATAGAGACTT+GGG | 0.588452 | 1_2:+33538585 | None:intergenic |
| GGCCATCAAACAACCGCATG+TGG | 0.590295 | 1_2:+33536390 | None:intergenic |
| GTGACAGGTGTCAAAACCAA+TGG | 0.593225 | 1_2:-33538656 | Msa0068040:CDS |
| TTTGCTATAAGTGATCTCCC+TGG | 0.595091 | 1_2:+33538701 | None:intergenic |
| CACTGAGCAAAATCAGACAC+GGG | 0.595236 | 1_2:-33536427 | Msa0068040:CDS |
| GTGCTGGATTTGATCCCACA+AGG | 0.598718 | 1_2:-33541118 | Msa0068040:intron |
| GAGAACAAAAGGTTTGATGG+TGG | 0.603128 | 1_2:+33541469 | None:intergenic |
| TCCCTGTGGCAACATAAGGA+TGG | 0.603229 | 1_2:+33539618 | None:intergenic |
| AAATATCACATTCTTGAGCA+AGG | 0.605301 | 1_2:+33536309 | None:intergenic |
| TCTACACTGTGAAGGTCGCA+AGG | 0.611781 | 1_2:-33541363 | Msa0068040:CDS |
| GGGTTTAGGAAGGACAGCAC+CGG | 0.612449 | 1_2:+33539105 | None:intergenic |
| TTAGAAATGAGAAGCTGCAG+TGG | 0.616652 | 1_2:-33539574 | Msa0068040:CDS |
| GTTGATTATTTGAATATCGG+TGG | 0.616729 | 1_2:-33539154 | Msa0068040:CDS |
| CAATGATGAGTTTAAGACCA+CGG | 0.620749 | 1_2:+33538726 | None:intergenic |
| TCACATTCTTGAGCAAGGAA+AGG | 0.622246 | 1_2:+33536314 | None:intergenic |
| CATATAAAGATGCATTGGAA+GGG | 0.626626 | 1_2:-33541262 | Msa0068040:CDS |
| GGTTGATCCAAGATGACAGT+GGG | 0.631080 | 1_2:+33539502 | None:intergenic |
| AGAACTTCCAACTCCTGCCA+AGG | 0.636769 | 1_2:-33537465 | Msa0068040:intron |
| TTTAGAGTTCTTATTCCCTG+TGG | 0.638479 | 1_2:+33539604 | None:intergenic |
| TTTGGTGCAGCAGAGAAACA+GGG | 0.640313 | 1_2:+33541722 | None:intergenic |
| CTACAAGCTTTAGCTCAACA+GGG | 0.648489 | 1_2:+33539528 | None:intergenic |
| TCCATCCTTATGTTGCCACA+GGG | 0.649172 | 1_2:-33539619 | Msa0068040:CDS |
| CATACTCATACAATAAGCAC+CGG | 0.650287 | 1_2:+33536899 | None:intergenic |
| TCACTGAGCAAAATCAGACA+CGG | 0.653042 | 1_2:-33536428 | Msa0068040:CDS |
| GATGGGTATCTACACTGTGA+AGG | 0.653835 | 1_2:-33541371 | Msa0068040:CDS |
| AATCTGCAGACTCACAAACA+GGG | 0.656316 | 1_2:+33537504 | None:intergenic |
| TCTTGGATCAACCATTACCA+AGG | 0.656897 | 1_2:-33539492 | Msa0068040:intron |
| ACAAAACAATCATAAAACGA+GGG | 0.669738 | 1_2:-33541634 | Msa0068040:five_prime_UTR |
| TGTAATCTCAGCATTTGCTG+GGG | 0.672495 | 1_2:+33537544 | None:intergenic |
| GTACATACCCAATACTCTGG+AGG | 0.674644 | 1_2:+33536849 | None:intergenic |
| GTTTGATTTGGAAAACATTG+TGG | 0.675214 | 1_2:-33540816 | Msa0068040:CDS |
| AACAAAACAATCATAAAACG+AGG | 0.676160 | 1_2:-33541635 | Msa0068040:five_prime_UTR |
| AACAACAATAAACTGCACCT+GGG | 0.677627 | 1_2:-33542779 | Msa0068040:five_prime_UTR |
| GAGGAGGTGTGTGCCTACCA+TGG | 0.690234 | 1_2:+33541586 | None:intergenic |
| TGTTGAGCTAAAGCTTGTAG+GGG | 0.694178 | 1_2:-33539525 | Msa0068040:CDS |
| TTGGTGCAGCAGAGAAACAG+GGG | 0.698869 | 1_2:+33541723 | None:intergenic |
| AGACATTCGAAGACCACATG+CGG | 0.704722 | 1_2:-33536403 | Msa0068040:CDS |
| TTAAACTCATCATTGAACCA+GGG | 0.707762 | 1_2:-33538718 | Msa0068040:CDS |
| AAGCATCATAGAGACTTGGG+CGG | 0.714237 | 1_2:+33538588 | None:intergenic |
| ACACTGTGAAGGTCGCAAGG+TGG | 0.722931 | 1_2:-33541360 | Msa0068040:CDS |
| TGGTTGATCCAAGATGACAG+TGG | 0.759149 | 1_2:+33539501 | None:intergenic |
| ACTGAGCAAAATCAGACACG+GGG | 0.760085 | 1_2:-33536426 | Msa0068040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATAATTAAAAAGA+AGG | + | chr1_2:33536333-33536352 | None:intergenic | 10.0% |
| !!! | ATAAAATAGATTTTTTTTAG+AGG | - | chr1_2:33536915-33536934 | Msa0068040:CDS | 10.0% |
| !! | GATGTTTAATAATGAAATTA+AGG | - | chr1_2:33536592-33536611 | Msa0068040:intron | 15.0% |
| !!! | TATAAATGCAATTTTTGAAA+CGG | - | chr1_2:33536617-33536636 | Msa0068040:intron | 15.0% |
| !! | TTAAAAAAACTATAACAAAC+GGG | + | chr1_2:33536758-33536777 | None:intergenic | 15.0% |
| !! | CTTAAAAAAACTATAACAAA+CGG | + | chr1_2:33536759-33536778 | None:intergenic | 15.0% |
| !!! | TTTTAAAAATCTGTAACAAA+CGG | + | chr1_2:33536831-33536850 | None:intergenic | 15.0% |
| !!! | AATAAATAATCTAGTTTGTT+TGG | + | chr1_2:33537010-33537029 | None:intergenic | 15.0% |
| !!! | TGTTTTGTTTATGTTTTTTT+TGG | + | chr1_2:33537250-33537269 | None:intergenic | 15.0% |
| !! | AAAAAAATAATCAATTAGCA+GGG | + | chr1_2:33540117-33540136 | None:intergenic | 15.0% |
| !! | TAAAAAAATAATCAATTAGC+AGG | + | chr1_2:33540118-33540137 | None:intergenic | 15.0% |
| !!! | GCTAATTGATTATTTTTTTA+CGG | - | chr1_2:33540118-33540137 | Msa0068040:intron | 15.0% |
| !!! | CTCAATGTTTTAATATTTTA+TGG | - | chr1_2:33540478-33540497 | Msa0068040:intron | 15.0% |
| !!! | CTTTTTCAATGAATATTTTA+TGG | - | chr1_2:33541092-33541111 | Msa0068040:intron | 15.0% |
| !!! | TTTTCATGCATGTTTTTTTT+AGG | - | chr1_2:33536536-33536555 | Msa0068040:intron | 20.0% |
| !!! | TTTCATGCATGTTTTTTTTA+GGG | - | chr1_2:33536537-33536556 | Msa0068040:intron | 20.0% |
| !! | TTGGATACAACTATATAAAA+GGG | + | chr1_2:33536991-33537010 | None:intergenic | 20.0% |
| !! | TTTGGATACAACTATATAAA+AGG | + | chr1_2:33536992-33537011 | None:intergenic | 20.0% |
| !!! | TTATTTTAATCCGTAACAAA+CGG | - | chr1_2:33537135-33537154 | Msa0068040:intron | 20.0% |
| !!! | TATTATTGGTTATGCTATTA+AGG | - | chr1_2:33537665-33537684 | Msa0068040:intron | 20.0% |
| !! | TTTACTTGATTATATCAAAC+TGG | - | chr1_2:33537841-33537860 | Msa0068040:intron | 20.0% |
| !!! | AATTGGTTTGTTTAATTGAT+TGG | - | chr1_2:33537896-33537915 | Msa0068040:intron | 20.0% |
| !! | TGATTTATTTATGAGATTCT+TGG | - | chr1_2:33537942-33537961 | Msa0068040:intron | 20.0% |
| !! | TTAAACATTTATTTGTCCTA+TGG | + | chr1_2:33538337-33538356 | None:intergenic | 20.0% |
| !! | AAAAATCTTCAATTTCTTCT+AGG | + | chr1_2:33538422-33538441 | None:intergenic | 20.0% |
| !! | AAATTTATCTCAAAAGAAGT+GGG | + | chr1_2:33538847-33538866 | None:intergenic | 20.0% |
| !! | AAAATTTATCTCAAAAGAAG+TGG | + | chr1_2:33538848-33538867 | None:intergenic | 20.0% |
| !!! | TTGCTTGTGAATTATTTTTT+AGG | + | chr1_2:33539005-33539024 | None:intergenic | 20.0% |
| !!! | AATGATCTTATTTATTCCTA+TGG | - | chr1_2:33539023-33539042 | Msa0068040:intron | 20.0% |
| !! | TCAATTTCATCAATTACATT+GGG | - | chr1_2:33539090-33539109 | Msa0068040:CDS | 20.0% |
| !! | TATTGTGCATTTATTACTTT+AGG | - | chr1_2:33539513-33539532 | Msa0068040:CDS | 20.0% |
| !!! | GAAGTTGATTATTTGAATAT+CGG | - | chr1_2:33539739-33539758 | Msa0068040:intron | 20.0% |
| !!! | ACAAATTTAATTGTTCTGAA+GGG | + | chr1_2:33540001-33540020 | None:intergenic | 20.0% |
| !! | TACAAATTTAATTGTTCTGA+AGG | + | chr1_2:33540002-33540021 | None:intergenic | 20.0% |
| !!! | ATTGATTATTTTTTTACGGT+TGG | - | chr1_2:33540122-33540141 | Msa0068040:intron | 20.0% |
| !!! | TTAATATTTTATGGTTTCGT+TGG | - | chr1_2:33540487-33540506 | Msa0068040:intron | 20.0% |
| !!! | TAATATTTTATGGTTTCGTT+GGG | - | chr1_2:33540488-33540507 | Msa0068040:intron | 20.0% |
| !!! | TTATTGATGATTTATGATTG+AGG | - | chr1_2:33540581-33540600 | Msa0068040:intron | 20.0% |
| !!! | TCAATGAATATTTTATGGTT+TGG | - | chr1_2:33541097-33541116 | Msa0068040:intron | 20.0% |
| !! | TTAGAATCAAGTAACTAAAA+TGG | + | chr1_2:33541235-33541254 | None:intergenic | 20.0% |
| !! | AATAGTTGCACAAATAATAT+AGG | - | chr1_2:33541481-33541500 | Msa0068040:CDS | 20.0% |
| !!! | CAAAATGATTCCTTTTAAAA+TGG | + | chr1_2:33542168-33542187 | None:intergenic | 20.0% |
| !!! | AATAATGTTTTTTCAAGCAA+AGG | + | chr1_2:33542345-33542364 | None:intergenic | 20.0% |
| !! | AAAGAAAAGACAAATATAGA+TGG | + | chr1_2:33542374-33542393 | None:intergenic | 20.0% |
| !! | GATTTCTTGTATAATATTTC+AGG | - | chr1_2:33542431-33542450 | Msa0068040:five_prime_UTR | 20.0% |
| !! | TTACATTCTAAATTGTCAAT+TGG | + | chr1_2:33542766-33542785 | None:intergenic | 20.0% |
| !!! | ATGTAAGCTCATTTTTAATA+AGG | - | chr1_2:33542780-33542799 | Msa0068040:five_prime_UTR | 20.0% |
| ! | TAGTGAAAGTTATTACTTGA+AGG | + | chr1_2:33536212-33536231 | None:intergenic | 25.0% |
| ! | TGCAGAAAAAATGTTAAGAA+TGG | + | chr1_2:33536446-33536465 | None:intergenic | 25.0% |
| !!! | GTTGTTATTTGCTTAATCAA+AGG | - | chr1_2:33536470-33536489 | Msa0068040:intron | 25.0% |
| !!! | TTCATGCATGTTTTTTTTAG+GGG | - | chr1_2:33536538-33536557 | Msa0068040:intron | 25.0% |
| !!! | TATTTTAATCCGTAACAAAC+GGG | - | chr1_2:33537136-33537155 | Msa0068040:intron | 25.0% |
| !!! | AAAAGGGTTACCAATTTTTT+GGG | + | chr1_2:33537216-33537235 | None:intergenic | 25.0% |
| !!! | TTTGGTTGTTTTGTTGAAAA+GGG | + | chr1_2:33537232-33537251 | None:intergenic | 25.0% |
| !!! | TTTTGGTTGTTTTGTTGAAA+AGG | + | chr1_2:33537233-33537252 | None:intergenic | 25.0% |
| ! | AACAAAACAATCATAAAACG+AGG | - | chr1_2:33537261-33537280 | Msa0068040:intron | 25.0% |
| ! | ACAAAACAATCATAAAACGA+GGG | - | chr1_2:33537262-33537281 | Msa0068040:intron | 25.0% |
| !!! | GTCAAAATTAGTTCTTTTTG+TGG | + | chr1_2:33537484-33537503 | None:intergenic | 25.0% |
| !!! | TGTTTGTGTTAGTTTTTCAA+TGG | - | chr1_2:33537873-33537892 | Msa0068040:intron | 25.0% |
| !!! | TGTTAGTTTTTCAATGGAAT+TGG | - | chr1_2:33537879-33537898 | Msa0068040:intron | 25.0% |
| ! | TTGTTTAATTGATTGGAGTT+TGG | - | chr1_2:33537903-33537922 | Msa0068040:intron | 25.0% |
| !!! | TTTTTCGGTCACTATATTAA+TGG | - | chr1_2:33537969-33537988 | Msa0068040:intron | 25.0% |
| !!! | TATTCCATATTTTAGCTACT+AGG | - | chr1_2:33538369-33538388 | Msa0068040:intron | 25.0% |
| ! | TATGTTTCACATATTTCTCT+TGG | - | chr1_2:33538466-33538485 | Msa0068040:intron | 25.0% |
| ! | ATATTTCTCTTGGTTATTGT+TGG | - | chr1_2:33538476-33538495 | Msa0068040:intron | 25.0% |
| ! | AATTTATCTCAAAAGAAGTG+GGG | + | chr1_2:33538846-33538865 | None:intergenic | 25.0% |
| !! | TTGAGATAAATTTTGTACGT+AGG | - | chr1_2:33538854-33538873 | Msa0068040:intron | 25.0% |
| !!! | TGTGAATTATTTTTTAGGCA+AGG | + | chr1_2:33539000-33539019 | None:intergenic | 25.0% |
| ! | CAATGTAATTGATGAAATTG+AGG | + | chr1_2:33539091-33539110 | None:intergenic | 25.0% |
| ! | CTCAATTTCATCAATTACAT+TGG | - | chr1_2:33539089-33539108 | Msa0068040:CDS | 25.0% |
| !! | AGAGAAAAAGTTTTTGATGA+AGG | + | chr1_2:33539140-33539159 | None:intergenic | 25.0% |
| ! | ATAAACCAAAACATAAACCA+TGG | + | chr1_2:33539210-33539229 | None:intergenic | 25.0% |
| !! | TTTTTATCTTTGTCATCCTT+AGG | - | chr1_2:33539254-33539273 | Msa0068040:intron | 25.0% |
| !! | CAGAAAAGTAAAGACTTTTA+AGG | + | chr1_2:33539434-33539453 | None:intergenic | 25.0% |
| !!! | TCATAATATAAGTGCTGAAA+TGG | - | chr1_2:33539631-33539650 | Msa0068040:intron | 25.0% |
| ! | AATATAGTTGACCATAATAG+TGG | + | chr1_2:33539695-33539714 | None:intergenic | 25.0% |
| ! | TGTGATTAAGTTTGTAATTC+TGG | - | chr1_2:33539874-33539893 | Msa0068040:intron | 25.0% |
| !!! | AATGAAGTTTTTAGAACCAT+TGG | + | chr1_2:33540259-33540278 | None:intergenic | 25.0% |
| ! | AAAAACTTCATTGTGATTGA+TGG | - | chr1_2:33540267-33540286 | Msa0068040:intron | 25.0% |
| !!! | GTCATTTTAAAGTGTGTATA+AGG | - | chr1_2:33540372-33540391 | Msa0068040:intron | 25.0% |
| !!! | CTGTTTTATTCTTTTTTCTC+TGG | + | chr1_2:33540541-33540560 | None:intergenic | 25.0% |
| ! | TGTTAATTGTAAGAATGAGT+AGG | + | chr1_2:33540683-33540702 | None:intergenic | 25.0% |
| ! | TTTACACTTGCACTATTTAA+GGG | + | chr1_2:33540740-33540759 | None:intergenic | 25.0% |
| ! | ATTTACACTTGCACTATTTA+AGG | + | chr1_2:33540741-33540760 | None:intergenic | 25.0% |
| !!! | TGAATATTTTATGGTTTGGT+TGG | - | chr1_2:33541101-33541120 | Msa0068040:intron | 25.0% |
| !!! | GAATATTTTATGGTTTGGTT+GGG | - | chr1_2:33541102-33541121 | Msa0068040:intron | 25.0% |
| ! | ATGTTGTGTTAACATTAACT+GGG | + | chr1_2:33541146-33541165 | None:intergenic | 25.0% |
| !! | ATTACAACTTTTGATGTAGT+CGG | - | chr1_2:33541369-33541388 | Msa0068040:CDS | 25.0% |
| !! | TAATTTGAGTTTCATTTGCA+GGG | - | chr1_2:33541951-33541970 | Msa0068040:intron | 25.0% |
| !! | TTTAGCAGAACCATTTTAAA+AGG | - | chr1_2:33542155-33542174 | Msa0068040:intron | 25.0% |
| !!! | ATTAGCTTTTTTGTTTGCAA+TGG | - | chr1_2:33542303-33542322 | Msa0068040:intron | 25.0% |
| !! | CAAGAAATCATTCTTTAAGA+CGG | + | chr1_2:33542420-33542439 | None:intergenic | 25.0% |
| !!! | CTTGAGATTTGTTGTATTTT+GGG | - | chr1_2:33542553-33542572 | Msa0068040:intron | 25.0% |
| ACTTGAAGGAAATTGAAGAA+AGG | + | chr1_2:33536198-33536217 | None:intergenic | 30.0% | |
| ! | GTAATCTGCATTTTGCATAT+TGG | - | chr1_2:33536256-33536275 | Msa0068040:three_prime_UTR | 30.0% |
| !! | CTCTAGTTTAATGCTATTTC+TGG | - | chr1_2:33536378-33536397 | Msa0068040:exon | 30.0% |
| !!! | GAAAAGGGTTACCAATTTTT+TGG | + | chr1_2:33537217-33537236 | None:intergenic | 30.0% |
| ! | AATGAGTGATTGAAGGTTTT+GGG | + | chr1_2:33537354-33537373 | None:intergenic | 30.0% |
| !! | TTAGTTCTTTTTGTGGTTTC+TGG | + | chr1_2:33537477-33537496 | None:intergenic | 30.0% |
| GGCTTACTGTATAGATAAAA+AGG | + | chr1_2:33537591-33537610 | None:intergenic | 30.0% | |
| TGAAGCATATAAAGATGCAT+TGG | - | chr1_2:33537629-33537648 | Msa0068040:intron | 30.0% | |
| CATATAAAGATGCATTGGAA+GGG | - | chr1_2:33537634-33537653 | Msa0068040:intron | 30.0% | |
| GAAGGGTTAACATCTATTAT+TGG | - | chr1_2:33537651-33537670 | Msa0068040:intron | 30.0% | |
| CTTGATTATATCAAACTGGT+TGG | - | chr1_2:33537845-33537864 | Msa0068040:intron | 30.0% | |
| !! | GAGATTCTTGGTGTATTTTT+CGG | - | chr1_2:33537954-33537973 | Msa0068040:intron | 30.0% |
| ATGGATAGGTGTATCTTTAA+TGG | - | chr1_2:33537988-33538007 | Msa0068040:intron | 30.0% | |
| AGGTGTATCTTTAATGGAAA+TGG | - | chr1_2:33537994-33538013 | Msa0068040:intron | 30.0% | |
| GGTGTATCTTTAATGGAAAT+GGG | - | chr1_2:33537995-33538014 | Msa0068040:intron | 30.0% | |
| TAATGGAAATGGGAAAATCT+TGG | - | chr1_2:33538005-33538024 | Msa0068040:intron | 30.0% | |
| !! | GTTTGATTTGGAAAACATTG+TGG | - | chr1_2:33538080-33538099 | Msa0068040:intron | 30.0% |
| ACTAAGAATCAATATACCTG+CGG | + | chr1_2:33538168-33538187 | None:intergenic | 30.0% | |
| CAATCCTAGTAGCTAAAATA+TGG | + | chr1_2:33538376-33538395 | None:intergenic | 30.0% | |
| CATAGCTTAGATGAATATCA+TGG | + | chr1_2:33538450-33538469 | None:intergenic | 30.0% | |
| CTTGGTTATTGTTGGAAAAT+TGG | - | chr1_2:33538484-33538503 | Msa0068040:intron | 30.0% | |
| TAATAAAATCTGCATCACTG+TGG | + | chr1_2:33538678-33538697 | None:intergenic | 30.0% | |
| ATTCAGAAATCATAGTGCAA+GGG | + | chr1_2:33538783-33538802 | None:intergenic | 30.0% | |
| AATTCAGAAATCATAGTGCA+AGG | + | chr1_2:33538784-33538803 | None:intergenic | 30.0% | |
| TGCACTATGATTTCTGAATT+TGG | - | chr1_2:33538784-33538803 | Msa0068040:intron | 30.0% | |
| ATTTATCTCAAAAGAAGTGG+GGG | + | chr1_2:33538845-33538864 | None:intergenic | 30.0% | |
| ! | ATTTTTATGTTGCTCCTACT+TGG | - | chr1_2:33538936-33538955 | Msa0068040:intron | 30.0% |
| ! | TTTTTATGTTGCTCCTACTT+GGG | - | chr1_2:33538937-33538956 | Msa0068040:intron | 30.0% |
| ATTAAAAGTTCAACCCAAGT+AGG | + | chr1_2:33538953-33538972 | None:intergenic | 30.0% | |
| GAAACGTTATTGCATTTCTT+CGG | + | chr1_2:33538978-33538997 | None:intergenic | 30.0% | |
| !! | ATTGATTGCTTTGAGATGTA+TGG | - | chr1_2:33539167-33539186 | Msa0068040:CDS | 30.0% |
| GGGAATAAGAACTCTAAATT+TGG | - | chr1_2:33539297-33539316 | Msa0068040:intron | 30.0% | |
| TTTAAGGATAACCTTGGTAA+TGG | + | chr1_2:33539418-33539437 | None:intergenic | 30.0% | |
| !! | AAGACTTTTAAGGATAACCT+TGG | + | chr1_2:33539424-33539443 | None:intergenic | 30.0% |
| TGATCCATTTATATGCTGAT+AGG | - | chr1_2:33539570-33539589 | Msa0068040:CDS | 30.0% | |
| GATCCATTTATATGCTGATA+GGG | - | chr1_2:33539571-33539590 | Msa0068040:CDS | 30.0% | |
| AAAATATCTACCTGGAAAGA+GGG | + | chr1_2:33539661-33539680 | None:intergenic | 30.0% | |
| ! | TTTCCAGGTAGATATTTTCA+GGG | - | chr1_2:33539663-33539682 | Msa0068040:intron | 30.0% |
| GTTGATTATTTGAATATCGG+TGG | - | chr1_2:33539742-33539761 | Msa0068040:intron | 30.0% | |
| ACAGTATCAATTAGATCTCT+GGG | + | chr1_2:33539814-33539833 | None:intergenic | 30.0% | |
| GTAATTCTGGTACAAGAATA+AGG | - | chr1_2:33539887-33539906 | Msa0068040:intron | 30.0% | |
| TAAGGAATACCACTGATAAA+TGG | - | chr1_2:33539905-33539924 | Msa0068040:intron | 30.0% | |
| AAGGAATACCACTGATAAAT+GGG | - | chr1_2:33539906-33539925 | Msa0068040:intron | 30.0% | |
| TAAGAATTCCCATTTATCAG+TGG | + | chr1_2:33539917-33539936 | None:intergenic | 30.0% | |
| !!! | TATTTTTTTACGGTTGGAGT+AGG | - | chr1_2:33540128-33540147 | Msa0068040:intron | 30.0% |
| TTAAACTCATCATTGAACCA+GGG | - | chr1_2:33540178-33540197 | Msa0068040:intron | 30.0% | |
| AGTGTGTATAAGGATTATGA+TGG | - | chr1_2:33540382-33540401 | Msa0068040:intron | 30.0% | |
| !! | ATTATGATGGATTCCTATGA+AGG | - | chr1_2:33540395-33540414 | Msa0068040:intron | 30.0% |
| TTGAGGAAAATTACAGAGTT+AGG | - | chr1_2:33540598-33540617 | Msa0068040:intron | 30.0% | |
| TGAGGAAAATTACAGAGTTA+GGG | - | chr1_2:33540599-33540618 | Msa0068040:intron | 30.0% | |
| TTACACTTGCACTATTTAAG+GGG | + | chr1_2:33540739-33540758 | None:intergenic | 30.0% | |
| ! | TTATTCTAGAAGGGGTAAAA+AGG | + | chr1_2:33540817-33540836 | None:intergenic | 30.0% |
| ATTCGTTATCAGCATTTGTT+AGG | + | chr1_2:33540914-33540933 | None:intergenic | 30.0% | |
| TTAACTGGGTTCACTTTAAT+TGG | + | chr1_2:33541132-33541151 | None:intergenic | 30.0% | |
| GATGTTGTGTTAACATTAAC+TGG | + | chr1_2:33541147-33541166 | None:intergenic | 30.0% | |
| ATTGCATTGTAAGAAGTTGT+TGG | - | chr1_2:33541190-33541209 | Msa0068040:CDS | 30.0% | |
| ! | TTTTATGCAGCATATAGAAC+TGG | - | chr1_2:33541320-33541339 | Msa0068040:CDS | 30.0% |
| ATCAATACATCATAGTACCT+TGG | + | chr1_2:33541451-33541470 | None:intergenic | 30.0% | |
| ! | ATGTCAGTGTTGTTAAATAG+CGG | - | chr1_2:33541532-33541551 | Msa0068040:CDS | 30.0% |
| TTGTCAAATAGCAACTCTAA+TGG | - | chr1_2:33541626-33541645 | Msa0068040:five_prime_UTR | 30.0% | |
| AATTCAACGTTGTCAAATAG+CGG | - | chr1_2:33541726-33541745 | Msa0068040:five_prime_UTR | 30.0% | |
| TTCTCAACATTGGATAATGA+TGG | - | chr1_2:33541895-33541914 | Msa0068040:intron | 30.0% | |
| ! | CAACATCACAAACTTGTTTA+AGG | - | chr1_2:33541918-33541937 | Msa0068040:intron | 30.0% |
| ! | CTAATTTGAGTTTCATTTGC+AGG | - | chr1_2:33541950-33541969 | Msa0068040:intron | 30.0% |
| ! | GCTTTTCTAAATCTCTTCTT+AGG | - | chr1_2:33542191-33542210 | Msa0068040:intron | 30.0% |
| ! | TTTAAGACGGCAAATATTGA+TGG | + | chr1_2:33542407-33542426 | None:intergenic | 30.0% |
| !! | ATATTTCAGGTTGAAGATGA+TGG | - | chr1_2:33542444-33542463 | Msa0068040:five_prime_UTR | 30.0% |
| CAGATAAGTTATCAGTTCAA+AGG | + | chr1_2:33542530-33542549 | None:intergenic | 30.0% | |
| TTGAACTGATAACTTATCTG+AGG | - | chr1_2:33542530-33542549 | Msa0068040:intron | 30.0% | |
| !!! | GCTTGAGATTTGTTGTATTT+TGG | - | chr1_2:33542552-33542571 | Msa0068040:intron | 30.0% |
| !!! | GATTTGTTGTATTTTGGGTT+TGG | - | chr1_2:33542558-33542577 | Msa0068040:intron | 30.0% |
| AAATATCACATTCTTGAGCA+AGG | + | chr1_2:33542590-33542609 | None:intergenic | 30.0% | |
| ! | TGCTCAAGAATGTGATATTT+TGG | - | chr1_2:33542590-33542609 | Msa0068040:intron | 30.0% |
| !! | ATTGTGTTGCTTATGTATGA+TGG | - | chr1_2:33542716-33542735 | Msa0068040:five_prime_UTR | 30.0% |
| AACAACAATAAACTGCACCT+GGG | - | chr1_2:33536117-33536136 | Msa0068040:three_prime_UTR | 35.0% | |
| CGTGAAAGAGAATAGAATTC+AGG | + | chr1_2:33536173-33536192 | None:intergenic | 35.0% | |
| ! | AAGAATGGAAGATTTGAAGC+TGG | + | chr1_2:33536431-33536450 | None:intergenic | 35.0% |
| AAACCAGCCAAGAAACAAAA+AGG | - | chr1_2:33536708-33536727 | Msa0068040:intron | 35.0% | |
| AACCAGCCAAGAAACAAAAA+GGG | - | chr1_2:33536709-33536728 | Msa0068040:intron | 35.0% | |
| GTAAATCGAGCCCAAAAAAT+TGG | - | chr1_2:33537203-33537222 | Msa0068040:intron | 35.0% | |
| ! | GAATGAGTGATTGAAGGTTT+TGG | + | chr1_2:33537355-33537374 | None:intergenic | 35.0% |
| TTTGGTGAATGAGTGATTGA+AGG | + | chr1_2:33537361-33537380 | None:intergenic | 35.0% | |
| !! | AAAAGGTTTGATGGTGGATT+TGG | + | chr1_2:33537424-33537443 | None:intergenic | 35.0% |
| TCTGAGAACAAAAGGTTTGA+TGG | + | chr1_2:33537433-33537452 | None:intergenic | 35.0% | |
| !!! | TTCTTTTTGTGGTTTCTGGT+GGG | + | chr1_2:33537473-33537492 | None:intergenic | 35.0% |
| !! | CTTCGGATTTGTTGAAACAA+TGG | + | chr1_2:33537506-33537525 | None:intergenic | 35.0% |
| TGTTTCAACAAATCCGAAGA+TGG | - | chr1_2:33537507-33537526 | Msa0068040:CDS | 35.0% | |
| GTTTCAACAAATCCGAAGAT+GGG | - | chr1_2:33537508-33537527 | Msa0068040:CDS | 35.0% | |
| !! | TCAACGTTTCTAGTAATCTG+TGG | + | chr1_2:33537612-33537631 | None:intergenic | 35.0% |
| GCATATAAAGATGCATTGGA+AGG | - | chr1_2:33537633-33537652 | Msa0068040:intron | 35.0% | |
| ! | CGGTCACTATATTAATGGAT+AGG | - | chr1_2:33537974-33537993 | Msa0068040:intron | 35.0% |
| CATTGACAGTGAGTTTGATT+TGG | - | chr1_2:33538068-33538087 | Msa0068040:intron | 35.0% | |
| AGTTTGATGCATACATCTTG+TGG | - | chr1_2:33538206-33538225 | Msa0068040:intron | 35.0% | |
| TTTAGCTACTAGGATTGATG+AGG | - | chr1_2:33538379-33538398 | Msa0068040:intron | 35.0% | |
| ! | TATTGTTGGAAAATTGGCTC+CGG | - | chr1_2:33538490-33538509 | Msa0068040:intron | 35.0% |
| AAATTCCATTAGTGCTTGGA+GGG | - | chr1_2:33538513-33538532 | Msa0068040:intron | 35.0% | |
| ! | CATAAGATGCTCCATTTTGA+AGG | + | chr1_2:33538590-33538609 | None:intergenic | 35.0% |
| ! | CTTCAAAATGGAGCATCTTA+TGG | - | chr1_2:33538588-33538607 | Msa0068040:CDS | 35.0% |
| !! | TTGACCTGATTTTGAAGACT+TGG | - | chr1_2:33538623-33538642 | Msa0068040:CDS | 35.0% |
| ATGTAAATAGGACACTAGCA+AGG | + | chr1_2:33538903-33538922 | None:intergenic | 35.0% | |
| ATGTGCGCTAGTATGTAAAT+AGG | + | chr1_2:33538915-33538934 | None:intergenic | 35.0% | |
| CTCTGCAGAATAAATACCAT+AGG | + | chr1_2:33539042-33539061 | None:intergenic | 35.0% | |
| ATGGTATTTATTCTGCAGAG+TGG | - | chr1_2:33539042-33539061 | Msa0068040:intron | 35.0% | |
| TGGTATTTATTCTGCAGAGT+GGG | - | chr1_2:33539043-33539062 | Msa0068040:intron | 35.0% | |
| ATTTCTAACTCTCATTGCCA+TGG | - | chr1_2:33539190-33539209 | Msa0068040:CDS | 35.0% | |
| ! | CATTGCCATGGTTTATGTTT+TGG | - | chr1_2:33539202-33539221 | Msa0068040:CDS | 35.0% |
| ! | TTTAGAGTTCTTATTCCCTG+TGG | + | chr1_2:33539295-33539314 | None:intergenic | 35.0% |
| ATCTTGTGCGTTATCACTTT+GGG | - | chr1_2:33539458-33539477 | Msa0068040:intron | 35.0% | |
| AGACCCTATCAGCATATAAA+TGG | + | chr1_2:33539577-33539596 | None:intergenic | 35.0% | |
| AAATATCTACCTGGAAAGAG+GGG | + | chr1_2:33539660-33539679 | None:intergenic | 35.0% | |
| GAAAATATCTACCTGGAAAG+AGG | + | chr1_2:33539662-33539681 | None:intergenic | 35.0% | |
| ! | CTTTCCAGGTAGATATTTTC+AGG | - | chr1_2:33539662-33539681 | Msa0068040:intron | 35.0% |
| GATTATTTGAATATCGGTGG+TGG | - | chr1_2:33539745-33539764 | Msa0068040:intron | 35.0% | |
| TCAATTAGATCTCTGGGTTT+AGG | + | chr1_2:33539808-33539827 | None:intergenic | 35.0% | |
| CACAGTATCAATTAGATCTC+TGG | + | chr1_2:33539815-33539834 | None:intergenic | 35.0% | |
| GAGATCTAATTGATACTGTG+AGG | - | chr1_2:33539815-33539834 | Msa0068040:intron | 35.0% | |
| TGCATGTCACAGTTACAAAA+TGG | + | chr1_2:33539959-33539978 | None:intergenic | 35.0% | |
| ! | ATTTTGTAACTGTGACATGC+AGG | - | chr1_2:33539958-33539977 | Msa0068040:intron | 35.0% |
| ! | TTTTGTAACTGTGACATGCA+GGG | - | chr1_2:33539959-33539978 | Msa0068040:intron | 35.0% |
| ! | AATGATGAGTTTAAGACCAC+GGG | + | chr1_2:33540172-33540191 | None:intergenic | 35.0% |
| ! | CAATGATGAGTTTAAGACCA+CGG | + | chr1_2:33540173-33540192 | None:intergenic | 35.0% |
| CTTAAACTCATCATTGAACC+AGG | - | chr1_2:33540177-33540196 | Msa0068040:intron | 35.0% | |
| CATTGTGATTGATGGAAGTA+TGG | - | chr1_2:33540275-33540294 | Msa0068040:intron | 35.0% | |
| GATAAGCATCATAGAGACTT+GGG | + | chr1_2:33540314-33540333 | None:intergenic | 35.0% | |
| TGATAAGCATCATAGAGACT+TGG | + | chr1_2:33540315-33540334 | None:intergenic | 35.0% | |
| AAGTCTCTATGATGCTTATC+AGG | - | chr1_2:33540314-33540333 | Msa0068040:intron | 35.0% | |
| ACAAGACAAAAGAGACTAAG+AGG | + | chr1_2:33540354-33540373 | None:intergenic | 35.0% | |
| ! | AAGTGTCTAGAATCCTTCAT+AGG | + | chr1_2:33540411-33540430 | None:intergenic | 35.0% |
| GAGGAAAATTACAGAGTTAG+GGG | - | chr1_2:33540600-33540619 | Msa0068040:intron | 35.0% | |
| AATTACAGAGTTAGGGGAAA+TGG | - | chr1_2:33540606-33540625 | Msa0068040:intron | 35.0% | |
| ATTACAGAGTTAGGGGAAAT+GGG | - | chr1_2:33540607-33540626 | Msa0068040:intron | 35.0% | |
| ! | ACTATTTAAGGGGTGTGAAT+GGG | + | chr1_2:33540729-33540748 | None:intergenic | 35.0% |
| GCAATCATTGATCCATCATA+AGG | + | chr1_2:33540865-33540884 | None:intergenic | 35.0% | |
| ! | TTATCAGCATTTGTTAGGAC+TGG | + | chr1_2:33540909-33540928 | None:intergenic | 35.0% |
| TTGCGTTGTAAAGAAGTTGT+TGG | - | chr1_2:33540976-33540995 | Msa0068040:intron | 35.0% | |
| !! | GAAGTTGTTGGAAGTTGATA+AGG | - | chr1_2:33540988-33541007 | Msa0068040:intron | 35.0% |
| ACACAAACAAAGCAGCATTA+GGG | + | chr1_2:33541263-33541282 | None:intergenic | 35.0% | |
| TTGTAATCTCAGCATTTGCT+GGG | + | chr1_2:33541356-33541375 | None:intergenic | 35.0% | |
| GCAATACACTATTCAGTACA+AGG | - | chr1_2:33541788-33541807 | Msa0068040:intron | 35.0% | |
| ACAATGCTATAGTACTCTTG+AGG | + | chr1_2:33541830-33541849 | None:intergenic | 35.0% | |
| ACTATAGCATTGTAGCATAG+AGG | - | chr1_2:33541837-33541856 | Msa0068040:intron | 35.0% | |
| CATACTCATACAATAAGCAC+CGG | + | chr1_2:33542000-33542019 | None:intergenic | 35.0% | |
| TTCTCTATAGTACGAGAAAG+CGG | - | chr1_2:33542074-33542093 | Msa0068040:intron | 35.0% | |
| ! | TGCTTGTTACACTTCATAGA+TGG | - | chr1_2:33542266-33542285 | Msa0068040:intron | 35.0% |
| GCTAAACTGAAACTAGAAAG+AGG | + | chr1_2:33542660-33542679 | None:intergenic | 35.0% | |
| CAACAACAATAAACTGCACC+TGG | - | chr1_2:33536116-33536135 | Msa0068040:three_prime_UTR | 40.0% | |
| ACATGACAGACATTGCTTTG+CGG | + | chr1_2:33536145-33536164 | None:intergenic | 40.0% | |
| !! | ATCCCTTTTTGTTTCTTGGC+TGG | + | chr1_2:33536714-33536733 | None:intergenic | 40.0% |
| AGCCAAGAAACAAAAAGGGA+TGG | - | chr1_2:33536713-33536732 | Msa0068040:intron | 40.0% | |
| GCCAAGAAACAAAAAGGGAT+GGG | - | chr1_2:33536714-33536733 | Msa0068040:intron | 40.0% | |
| !! | TCCCATCCCTTTTTGTTTCT+TGG | + | chr1_2:33536718-33536737 | None:intergenic | 40.0% |
| GCTTCAAATGAGAAGCTGTT+AGG | - | chr1_2:33536881-33536900 | Msa0068040:CDS | 40.0% | |
| AAACAGGGGAGACAGATTAA+GGG | + | chr1_2:33537162-33537181 | None:intergenic | 40.0% | |
| !!! | GTGATTGAAGGTTTTGGGAA+TGG | + | chr1_2:33537349-33537368 | None:intergenic | 40.0% |
| !!! | GTTTTGGGGTAATGGGTTTT+TGG | + | chr1_2:33537379-33537398 | None:intergenic | 40.0% |
| !!! | TGGTGGATTTGGTTTTGAGA+GGG | + | chr1_2:33537413-33537432 | None:intergenic | 40.0% |
| !!! | ATGGTGGATTTGGTTTTGAG+AGG | + | chr1_2:33537414-33537433 | None:intergenic | 40.0% |
| GAGAACAAAAGGTTTGATGG+TGG | + | chr1_2:33537430-33537449 | None:intergenic | 40.0% | |
| !! | AGAACTGCTCTGAGAACAAA+AGG | + | chr1_2:33537441-33537460 | None:intergenic | 40.0% |
| !!! | TCTTTTTGTGGTTTCTGGTG+GGG | + | chr1_2:33537472-33537491 | None:intergenic | 40.0% |
| !! | GTTCTTTTTGTGGTTTCTGG+TGG | + | chr1_2:33537474-33537493 | None:intergenic | 40.0% |
| ACAGTGTAGATACCCATCTT+CGG | + | chr1_2:33537523-33537542 | None:intergenic | 40.0% | |
| ! | TTTGGAGCATTTGAGAAGCT+TGG | - | chr1_2:33537707-33537726 | Msa0068040:intron | 40.0% |
| ! | TTGGAGCATTTGAGAAGCTT+GGG | - | chr1_2:33537708-33537727 | Msa0068040:intron | 40.0% |
| TGGAAATGGGAAAATCTTGG+AGG | - | chr1_2:33538008-33538027 | Msa0068040:intron | 40.0% | |
| TGGGAAAATCTTGGAGGATT+TGG | - | chr1_2:33538014-33538033 | Msa0068040:intron | 40.0% | |
| ! | AATCTTGGAGGATTTGGTCT+TGG | - | chr1_2:33538020-33538039 | Msa0068040:intron | 40.0% |
| TGCAAGAATTGCTGGAAAGA+GGG | - | chr1_2:33538107-33538126 | Msa0068040:intron | 40.0% | |
| ! | AGAGGGTGAATGTTTTGCTT+CGG | - | chr1_2:33538124-33538143 | Msa0068040:intron | 40.0% |
| CTTCTTCGTGTCTGTCTAAA+CGG | + | chr1_2:33538311-33538330 | None:intergenic | 40.0% | |
| AGACACGAAGAAGTTTCCAT+AGG | - | chr1_2:33538318-33538337 | Msa0068040:intron | 40.0% | |
| CCAAGCACTAATGGAATTTC+CGG | + | chr1_2:33538512-33538531 | None:intergenic | 40.0% | |
| GAAATTCCATTAGTGCTTGG+AGG | - | chr1_2:33538512-33538531 | Msa0068040:intron | 40.0% | |
| TCAACTTTCACCATCCTCTT+CGG | - | chr1_2:33538562-33538581 | Msa0068040:intron | 40.0% | |
| AGATATTCCACTTCAAGCGT+TGG | - | chr1_2:33538699-33538718 | Msa0068040:CDS | 40.0% | |
| GATATTCCACTTCAAGCGTT+GGG | - | chr1_2:33538700-33538719 | Msa0068040:CDS | 40.0% | |
| !! | TGACAGCAAAAGTGTTAGAG+AGG | - | chr1_2:33538747-33538766 | Msa0068040:CDS | 40.0% |
| TGTACGTAGGCAAGCAAATA+TGG | - | chr1_2:33538867-33538886 | Msa0068040:intron | 40.0% | |
| TGAAGGCAAAAACGAGAAGA+GGG | + | chr1_2:33539123-33539142 | None:intergenic | 40.0% | |
| ATGAAGGCAAAAACGAGAAG+AGG | + | chr1_2:33539124-33539143 | None:intergenic | 40.0% | |
| TTATTCCCTGTGGCAACATA+AGG | + | chr1_2:33539285-33539304 | None:intergenic | 40.0% | |
| TTAGAAATGAGAAGCTGCAG+TGG | - | chr1_2:33539322-33539341 | Msa0068040:intron | 40.0% | |
| !! | GTGGTTTTTAGATGCTGTCA+AGG | - | chr1_2:33539341-33539360 | Msa0068040:intron | 40.0% |
| ! | CTACAAGCTTTAGCTCAACA+GGG | + | chr1_2:33539371-33539390 | None:intergenic | 40.0% |
| CTGTTGAGCTAAAGCTTGTA+GGG | - | chr1_2:33539370-33539389 | Msa0068040:intron | 40.0% | |
| TGTTGAGCTAAAGCTTGTAG+GGG | - | chr1_2:33539371-33539390 | Msa0068040:intron | 40.0% | |
| TCTTGGATCAACCATTACCA+AGG | - | chr1_2:33539404-33539423 | Msa0068040:intron | 40.0% | |
| CATCTTGTGCGTTATCACTT+TGG | - | chr1_2:33539457-33539476 | Msa0068040:intron | 40.0% | |
| CATCCCTGAAAATATCTACC+TGG | + | chr1_2:33539669-33539688 | None:intergenic | 40.0% | |
| !! | GGTAGATATTTTCAGGGATG+CGG | - | chr1_2:33539669-33539688 | Msa0068040:intron | 40.0% |
| TATTGACGAAATTCGAGCTC+AGG | - | chr1_2:33539711-33539730 | Msa0068040:intron | 40.0% | |
| ATTGACGAAATTCGAGCTCA+GGG | - | chr1_2:33539712-33539731 | Msa0068040:intron | 40.0% | |
| GGGATCGATTATTATCATGC+CGG | - | chr1_2:33539772-33539791 | Msa0068040:intron | 40.0% | |
| TTAGATCTCTGGGTTTAGGA+AGG | + | chr1_2:33539804-33539823 | None:intergenic | 40.0% | |
| CACAAGCAGATAGAAAGAAG+CGG | + | chr1_2:33540039-33540058 | None:intergenic | 40.0% | |
| ATCTGCTTGTGAATGTCACA+TGG | - | chr1_2:33540048-33540067 | Msa0068040:intron | 40.0% | |
| ATTAGCAGGGATACTGTGAA+AGG | + | chr1_2:33540104-33540123 | None:intergenic | 40.0% | |
| ! | TTTTACGGTTGGAGTAGGTA+CGG | - | chr1_2:33540133-33540152 | Msa0068040:intron | 40.0% |
| ! | TTTGCTATAAGTGATCTCCC+TGG | + | chr1_2:33540198-33540217 | None:intergenic | 40.0% |
| ! | TTTTCTCTGGTGTGAGTTTC+TGG | + | chr1_2:33540528-33540547 | None:intergenic | 40.0% |
| ! | CTATTTAAGGGGTGTGAATG+GGG | + | chr1_2:33540728-33540747 | None:intergenic | 40.0% |
| ! | CACTATTTAAGGGGTGTGAA+TGG | + | chr1_2:33540730-33540749 | None:intergenic | 40.0% |
| ! | GAAGGGGTAAAAAGGTACAT+GGG | + | chr1_2:33540809-33540828 | None:intergenic | 40.0% |
| ! | AGAAGGGGTAAAAAGGTACA+TGG | + | chr1_2:33540810-33540829 | None:intergenic | 40.0% |
| ! | TGGCAGGTTTATTCTAGAAG+GGG | + | chr1_2:33540825-33540844 | None:intergenic | 40.0% |
| ! | GTGGCAGGTTTATTCTAGAA+GGG | + | chr1_2:33540826-33540845 | None:intergenic | 40.0% |
| TGTGGCAGGTTTATTCTAGA+AGG | + | chr1_2:33540827-33540846 | None:intergenic | 40.0% | |
| AGAATAAACCTGCCACACTT+TGG | - | chr1_2:33540830-33540849 | Msa0068040:CDS | 40.0% | |
| GAATAAACCTGCCACACTTT+GGG | - | chr1_2:33540831-33540850 | Msa0068040:CDS | 40.0% | |
| TTGATCCATCATAAGGCTGT+GGG | + | chr1_2:33540858-33540877 | None:intergenic | 40.0% | |
| ATTGATCCATCATAAGGCTG+TGG | + | chr1_2:33540859-33540878 | None:intergenic | 40.0% | |
| ! | TGATGGATCAATGATTGCTC+TGG | - | chr1_2:33540867-33540886 | Msa0068040:CDS | 40.0% |
| ! | GGACTGGTACTAACAATGAT+GGG | + | chr1_2:33540893-33540912 | None:intergenic | 40.0% |
| ! | AGGACTGGTACTAACAATGA+TGG | + | chr1_2:33540894-33540913 | None:intergenic | 40.0% |
| ACTGCTGTGCTAACTTTAAC+TGG | + | chr1_2:33540937-33540956 | None:intergenic | 40.0% | |
| GACACAAACAAAGCAGCATT+AGG | + | chr1_2:33541264-33541283 | None:intergenic | 40.0% | |
| ! | TGTAATCTCAGCATTTGCTG+GGG | + | chr1_2:33541355-33541374 | None:intergenic | 40.0% |
| GTTGTAATCTCAGCATTTGC+TGG | + | chr1_2:33541357-33541376 | None:intergenic | 40.0% | |
| AATCTGCAGACTCACAAACA+GGG | + | chr1_2:33541395-33541414 | None:intergenic | 40.0% | |
| AAATCTGCAGACTCACAAAC+AGG | + | chr1_2:33541396-33541415 | None:intergenic | 40.0% | |
| TTGTGAGTCTGCAGATTTCT+TGG | - | chr1_2:33541398-33541417 | Msa0068040:CDS | 40.0% | |
| TGTGAGTCTGCAGATTTCTT+GGG | - | chr1_2:33541399-33541418 | Msa0068040:CDS | 40.0% | |
| TCTGCAGATTTCTTGGGAAA+AGG | - | chr1_2:33541405-33541424 | Msa0068040:CDS | 40.0% | |
| ATACATCATAGTACCTTGGC+AGG | + | chr1_2:33541447-33541466 | None:intergenic | 40.0% | |
| CGATCTGCAATTGACAACAT+TGG | - | chr1_2:33541698-33541717 | Msa0068040:intron | 40.0% | |
| CGATCTGCAATTCTCAACAT+TGG | - | chr1_2:33541885-33541904 | Msa0068040:intron | 40.0% | |
| CGGTGCTTATTGTATGAGTA+TGG | - | chr1_2:33541998-33542017 | Msa0068040:intron | 40.0% | |
| TTCTCGTACTATAGAGAAGC+TGG | + | chr1_2:33542072-33542091 | None:intergenic | 40.0% | |
| TCACTGAGCAAAATCAGACA+CGG | - | chr1_2:33542468-33542487 | Msa0068040:five_prime_UTR | 40.0% | |
| TCACATTCTTGAGCAAGGAA+AGG | + | chr1_2:33542585-33542604 | None:intergenic | 40.0% | |
| CATGACAGACATTGCTTTGC+GGG | + | chr1_2:33536144-33536163 | None:intergenic | 45.0% | |
| !! | TGGCTGGTTTGAGAAGAAAG+AGG | + | chr1_2:33536698-33536717 | None:intergenic | 45.0% |
| !! | AACGGGCTCTAAAAAGCCAT+GGG | + | chr1_2:33536741-33536760 | None:intergenic | 45.0% |
| !! | AAACGGGCTCTAAAAAGCCA+TGG | + | chr1_2:33536742-33536761 | None:intergenic | 45.0% |
| ! | GATTAAGGGCCCGTTTGTTA+CGG | + | chr1_2:33537148-33537167 | None:intergenic | 45.0% |
| GAAACAGGGGAGACAGATTA+AGG | + | chr1_2:33537163-33537182 | None:intergenic | 45.0% | |
| ! | TTTGGTGCAGCAGAGAAACA+GGG | + | chr1_2:33537177-33537196 | None:intergenic | 45.0% |
| GGCTCGATTTACAGTGTGTT+TGG | + | chr1_2:33537195-33537214 | None:intergenic | 45.0% | |
| !! | ACGAGGGCTTTGTTTGACTT+TGG | - | chr1_2:33537278-33537297 | Msa0068040:intron | 45.0% |
| ! | GACTTTGGTTTCCATCACCA+TGG | - | chr1_2:33537293-33537312 | Msa0068040:intron | 45.0% |
| TTGGTTTCCATCACCATGGT+AGG | - | chr1_2:33537297-33537316 | Msa0068040:intron | 45.0% | |
| GAATGGAACAAGAGTGAGAG+AGG | + | chr1_2:33537332-33537351 | None:intergenic | 45.0% | |
| !!! | TGAGGAGGTTTTGGGGTAAT+GGG | + | chr1_2:33537386-33537405 | None:intergenic | 45.0% |
| !!! | ATGAGGAGGTTTTGGGGTAA+TGG | + | chr1_2:33537387-33537406 | None:intergenic | 45.0% |
| ! | AGGGAGAATGAGGAGGTTTT+GGG | + | chr1_2:33537394-33537413 | None:intergenic | 45.0% |
| !! | TTTTGAGAGGGAGAATGAGG+AGG | + | chr1_2:33537401-33537420 | None:intergenic | 45.0% |
| !!! | TGGTTTTGAGAGGGAGAATG+AGG | + | chr1_2:33537404-33537423 | None:intergenic | 45.0% |
| GATGGGTATCTACACTGTGA+AGG | - | chr1_2:33537525-33537544 | Msa0068040:CDS | 45.0% | |
| TCGCAAGGTGGATGAGATTA+TGG | - | chr1_2:33537548-33537567 | Msa0068040:CDS | 45.0% | |
| ! | CATTTGAGAAGCTTGGGTTG+TGG | - | chr1_2:33537714-33537733 | Msa0068040:intron | 45.0% |
| !! | TGTGGTGCTGTTCTTGTTAG+TGG | - | chr1_2:33537732-33537751 | Msa0068040:intron | 45.0% |
| TGGATTTGATCCCACAAGGT+TGG | - | chr1_2:33537782-33537801 | Msa0068040:intron | 45.0% | |
| CTGCAAGAATTGCTGGAAAG+AGG | - | chr1_2:33538106-33538125 | Msa0068040:intron | 45.0% | |
| TAATCCTGATGTTGATCCGC+AGG | - | chr1_2:33538149-33538168 | Msa0068040:intron | 45.0% | |
| TATACCTGCGGATCAACATC+AGG | + | chr1_2:33538156-33538175 | None:intergenic | 45.0% | |
| CCGGAAATTCCATTAGTGCT+TGG | - | chr1_2:33538509-33538528 | Msa0068040:intron | 45.0% | |
| GTGAAAGTTGAGGCTTAGTG+CGG | + | chr1_2:33538553-33538572 | None:intergenic | 45.0% | |
| GAAGAGGATGGTGAAAGTTG+AGG | + | chr1_2:33538563-33538582 | None:intergenic | 45.0% | |
| !! | TTTGAAGGTACCGAAGAGGA+TGG | + | chr1_2:33538575-33538594 | None:intergenic | 45.0% |
| !!! | CCATTTTGAAGGTACCGAAG+AGG | + | chr1_2:33538579-33538598 | None:intergenic | 45.0% |
| CCTCTTCGGTACCTTCAAAA+TGG | - | chr1_2:33538576-33538595 | Msa0068040:intron | 45.0% | |
| TGCGCCAAGTCTTCAAAATC+AGG | + | chr1_2:33538630-33538649 | None:intergenic | 45.0% | |
| !! | TTTTGCTGTCAGACTCGAAG+TGG | + | chr1_2:33538738-33538757 | None:intergenic | 45.0% |
| GCAACATAAGGATGGACCTA+AGG | + | chr1_2:33539273-33539292 | None:intergenic | 45.0% | |
| TCCATCCTTATGTTGCCACA+GGG | - | chr1_2:33539277-33539296 | Msa0068040:intron | 45.0% | |
| ! | CCTACAAGCTTTAGCTCAAC+AGG | + | chr1_2:33539372-33539391 | None:intergenic | 45.0% |
| CCTGTTGAGCTAAAGCTTGT+AGG | - | chr1_2:33539369-33539388 | Msa0068040:intron | 45.0% | |
| GGTTGATCCAAGATGACAGT+GGG | + | chr1_2:33539397-33539416 | None:intergenic | 45.0% | |
| TGGTTGATCCAAGATGACAG+TGG | + | chr1_2:33539398-33539417 | None:intergenic | 45.0% | |
| GCTGATAGGGTCTATTTGCT+CGG | - | chr1_2:33539584-33539603 | Msa0068040:CDS | 45.0% | |
| !! | TTGAATATCGGTGGTGGACT+TGG | - | chr1_2:33539751-33539770 | Msa0068040:intron | 45.0% |
| !! | TGAATATCGGTGGTGGACTT+GGG | - | chr1_2:33539752-33539771 | Msa0068040:intron | 45.0% |
| TTTACGGTTGGAGTAGGTAC+GGG | - | chr1_2:33540134-33540153 | Msa0068040:intron | 45.0% | |
| ! | ACACCTGTTGCTTAGTTAGC+CGG | - | chr1_2:33540217-33540236 | Msa0068040:intron | 45.0% |
| GTGACAGGTGTCAAAACCAA+TGG | - | chr1_2:33540240-33540259 | Msa0068040:intron | 45.0% | |
| AAGCATCATAGAGACTTGGG+CGG | + | chr1_2:33540311-33540330 | None:intergenic | 45.0% | |
| !! | CTTAGCTCTGGTCAGATCTA+GGG | + | chr1_2:33540636-33540655 | None:intergenic | 45.0% |
| AGTGACGTAGTCAAGTAGCT+TGG | + | chr1_2:33540782-33540801 | None:intergenic | 45.0% | |
| TGATCCATCATAAGGCTGTG+GGG | + | chr1_2:33540857-33540876 | None:intergenic | 45.0% | |
| GAGTTTCATTTGCAGGGTAC+TGG | - | chr1_2:33541957-33541976 | Msa0068040:intron | 45.0% | |
| GTACATACCCAATACTCTGG+AGG | + | chr1_2:33542050-33542069 | None:intergenic | 45.0% | |
| CTGGTACATACCCAATACTC+TGG | + | chr1_2:33542053-33542072 | None:intergenic | 45.0% | |
| CACTGAGCAAAATCAGACAC+GGG | - | chr1_2:33542469-33542488 | Msa0068040:five_prime_UTR | 45.0% | |
| ACTGAGCAAAATCAGACACG+GGG | - | chr1_2:33542470-33542489 | Msa0068040:five_prime_UTR | 45.0% | |
| AGACATTCGAAGACCACATG+CGG | - | chr1_2:33542493-33542512 | Msa0068040:intron | 45.0% | |
| !!! | TAATAATAATTACAAAATTT+TGG | - | chr1_2:33537689-33537708 | Msa0068040:intron | 5.0% |
| ACAAAAAGGGATGGGACCCA+TGG | - | chr1_2:33536722-33536741 | Msa0068040:intron | 50.0% | |
| TTGGTGCAGCAGAGAAACAG+GGG | + | chr1_2:33537176-33537195 | None:intergenic | 50.0% | |
| !! | GTTTGGTGCAGCAGAGAAAC+AGG | + | chr1_2:33537178-33537197 | None:intergenic | 50.0% |
| TGGAACAAGAGTGAGAGAGG+AGG | + | chr1_2:33537329-33537348 | None:intergenic | 50.0% | |
| ! | GGGAGAATGAGGAGGTTTTG+GGG | + | chr1_2:33537393-33537412 | None:intergenic | 50.0% |
| ! | GAGGGAGAATGAGGAGGTTT+TGG | + | chr1_2:33537395-33537414 | None:intergenic | 50.0% |
| !!! | TGTGGTTTCTGGTGGGGTTT+TGG | + | chr1_2:33537466-33537485 | None:intergenic | 50.0% |
| TCTACACTGTGAAGGTCGCA+AGG | - | chr1_2:33537533-33537552 | Msa0068040:CDS | 50.0% | |
| CTTAAACTCGCTCTTCGTGC+TGG | - | chr1_2:33537762-33537781 | Msa0068040:intron | 50.0% | |
| GTGCTGGATTTGATCCCACA+AGG | - | chr1_2:33537778-33537797 | Msa0068040:intron | 50.0% | |
| GCAAGCTGAACCAACCTTGT+GGG | + | chr1_2:33537795-33537814 | None:intergenic | 50.0% | |
| AGCAAGCTGAACCAACCTTG+TGG | + | chr1_2:33537796-33537815 | None:intergenic | 50.0% | |
| GTTGACAAACACGCCTGCTT+CGG | + | chr1_2:33538049-33538068 | None:intergenic | 50.0% | |
| CTGCATCACTGTGGTTGAAG+AGG | + | chr1_2:33538669-33538688 | None:intergenic | 50.0% | |
| !! | TTCCACTTCAAGCGTTGGGT+AGG | - | chr1_2:33538704-33538723 | Msa0068040:CDS | 50.0% |
| !! | TCCACTTCAAGCGTTGGGTA+GGG | - | chr1_2:33538705-33538724 | Msa0068040:CDS | 50.0% |
| GTCCATCCTTATGTTGCCAC+AGG | - | chr1_2:33539276-33539295 | Msa0068040:intron | 50.0% | |
| TCCCTGTGGCAACATAAGGA+TGG | + | chr1_2:33539281-33539300 | None:intergenic | 50.0% | |
| AAATGGTTGCCCCTCTTTCC+AGG | - | chr1_2:33539648-33539667 | Msa0068040:intron | 50.0% | |
| ! | CACCTGTTGCTTAGTTAGCC+GGG | - | chr1_2:33540218-33540237 | Msa0068040:intron | 50.0% |
| !!! | TGGTTTTGACACCTGTCACC+CGG | + | chr1_2:33540239-33540258 | None:intergenic | 50.0% |
| GAGACTTGGGCGGATAAGTT+CGG | + | chr1_2:33540301-33540320 | None:intergenic | 50.0% | |
| !! | GCTTAGCTCTGGTCAGATCT+AGG | + | chr1_2:33540637-33540656 | None:intergenic | 50.0% |
| GACCAGAGCTAAGCTCCTAT+AGG | - | chr1_2:33540643-33540662 | Msa0068040:intron | 50.0% | |
| AGCCTATAGGAGCTTAGCTC+TGG | + | chr1_2:33540648-33540667 | None:intergenic | 50.0% | |
| !! | GCAGCTCTAAGCTAGCCTAT+AGG | + | chr1_2:33540661-33540680 | None:intergenic | 50.0% |
| !! | TGGGGTTGAGAAGGGTATCT+TGG | + | chr1_2:33540710-33540729 | None:intergenic | 50.0% |
| GGTGTGAATGGGGTTGAGAA+GGG | + | chr1_2:33540718-33540737 | None:intergenic | 50.0% | |
| AGAACTTCCAACTCCTGCCA+AGG | - | chr1_2:33541431-33541450 | Msa0068040:CDS | 50.0% | |
| CATAGTACCTTGGCAGGAGT+TGG | + | chr1_2:33541441-33541460 | None:intergenic | 50.0% | |
| !! | TCATTTGCAGGGTACTGGTC+TGG | - | chr1_2:33541962-33541981 | Msa0068040:intron | 50.0% |
| GGTCTGGTTGTTCATGATGC+CGG | - | chr1_2:33541978-33541997 | Msa0068040:intron | 50.0% | |
| AGATGCGACCTCCAGAGTAT+TGG | - | chr1_2:33542039-33542058 | Msa0068040:intron | 50.0% | |
| ! | GATGCGACCTCCAGAGTATT+GGG | - | chr1_2:33542040-33542059 | Msa0068040:intron | 50.0% |
| GACCACATGCGGTTGTTTGA+TGG | - | chr1_2:33542504-33542523 | Msa0068040:intron | 50.0% | |
| GTGTGTGCCTACCATGGTGA+TGG | + | chr1_2:33537307-33537326 | None:intergenic | 55.0% | |
| ACACTGTGAAGGTCGCAAGG+TGG | - | chr1_2:33537536-33537555 | Msa0068040:CDS | 55.0% | |
| GTGGCAGCTGCAAGAATTGC+TGG | - | chr1_2:33538099-33538118 | Msa0068040:intron | 55.0% | |
| GGGATCCCTCCAAGCACTAA+TGG | + | chr1_2:33538521-33538540 | None:intergenic | 55.0% | |
| GCTTAGTGCGGATCCATGGA+GGG | + | chr1_2:33538541-33538560 | None:intergenic | 55.0% | |
| TGAGGCTTAGTGCGGATCCA+TGG | + | chr1_2:33538545-33538564 | None:intergenic | 55.0% | |
| TCCCTACCCAACGCTTGAAG+TGG | + | chr1_2:33538709-33538728 | None:intergenic | 55.0% | |
| CAGGGATGCGGCCACTATTA+TGG | - | chr1_2:33539681-33539700 | Msa0068040:intron | 55.0% | |
| GGGTTTAGGAAGGACAGCAC+CGG | + | chr1_2:33539794-33539813 | None:intergenic | 55.0% | |
| CTGTGACATGCAGGGACATG+AGG | - | chr1_2:33539967-33539986 | Msa0068040:intron | 55.0% | |
| CACCCGGCTAACTAAGCAAC+AGG | + | chr1_2:33540223-33540242 | None:intergenic | 55.0% | |
| TGCTTAGTTAGCCGGGTGAC+AGG | - | chr1_2:33540225-33540244 | Msa0068040:intron | 55.0% | |
| GGGTGTGAATGGGGTTGAGA+AGG | + | chr1_2:33540719-33540738 | None:intergenic | 55.0% | |
| ! | ATCTCAGCATTTGCTGGGGC+TGG | + | chr1_2:33541351-33541370 | None:intergenic | 55.0% |
| GGCCATCAAACAACCGCATG+TGG | + | chr1_2:33542509-33542528 | None:intergenic | 55.0% | |
| GACATTGCTTTGCGGGACCC+AGG | + | chr1_2:33536137-33536156 | None:intergenic | 60.0% | |
| ! | GAGGAGGTGTGTGCCTACCA+TGG | + | chr1_2:33537313-33537332 | None:intergenic | 60.0% |
| !! | TTGGTCTTGGCTGCCGAAGC+AGG | - | chr1_2:33538033-33538052 | Msa0068040:intron | 60.0% |
| TGCTTGGAGGGATCCCTCCA+TGG | - | chr1_2:33538525-33538544 | Msa0068040:intron | 60.0% | |
| GGCTTAGTGCGGATCCATGG+AGG | + | chr1_2:33538542-33538561 | None:intergenic | 60.0% | |
| !! | TCAAGCGTTGGGTAGGGAGC+AGG | - | chr1_2:33538711-33538730 | Msa0068040:CDS | 60.0% |
| GTAGGGGCCCACTGTCATCT+TGG | - | chr1_2:33539387-33539406 | Msa0068040:intron | 60.0% | |
| ! | CGGGAGCTTGTTCTTTCCCG+TGG | - | chr1_2:33540153-33540172 | Msa0068040:intron | 60.0% |
| ! | TGGGCCCCACAGCCTTATGA+TGG | - | chr1_2:33540850-33540869 | Msa0068040:CDS | 60.0% |
| TGTGGGGCCCAAAGTGTGGC+AGG | + | chr1_2:33540841-33540860 | None:intergenic | 65.0% | |
| AGGCTGTGGGGCCCAAAGTG+TGG | + | chr1_2:33540845-33540864 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 33536090 | 33542828 | 33536090 | ID=Msa0068040;Name=Msa0068040 |
| chr1_2 | mRNA | 33536090 | 33542828 | 33536090 | ID=Msa0068040-mRNA-1;Parent=Msa0068040;Name=Msa0068040-mRNA-1;_AED=0.16;_eAED=0.16;_QI=365|1|1|1|0.63|0.58|12|295|484 |
| chr1_2 | exon | 33536090 | 33536465 | 33536090 | ID=Msa0068040-mRNA-1:exon:11047;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33536857 | 33536946 | 33536857 | ID=Msa0068040-mRNA-1:exon:11046;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33537466 | 33537588 | 33537466 | ID=Msa0068040-mRNA-1:exon:11045;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33538583 | 33538768 | 33538583 | ID=Msa0068040-mRNA-1:exon:11044;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33539087 | 33539248 | 33539087 | ID=Msa0068040-mRNA-1:exon:11043;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33539493 | 33539642 | 33539493 | ID=Msa0068040-mRNA-1:exon:11042;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33540748 | 33540922 | 33540748 | ID=Msa0068040-mRNA-1:exon:11041;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33541119 | 33541693 | 33541119 | ID=Msa0068040-mRNA-1:exon:11040;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33541715 | 33541752 | 33541715 | ID=Msa0068040-mRNA-1:exon:11039;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33542167 | 33542203 | 33542167 | ID=Msa0068040-mRNA-1:exon:11038;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33542427 | 33542503 | 33542427 | ID=Msa0068040-mRNA-1:exon:11037;Parent=Msa0068040-mRNA-1 |
| chr1_2 | exon | 33542703 | 33542828 | 33542703 | ID=Msa0068040-mRNA-1:exon:11036;Parent=Msa0068040-mRNA-1 |
| chr1_2 | five_prime_UTR | 33542703 | 33542828 | 33542703 | ID=Msa0068040-mRNA-1:five_prime_utr;Parent=Msa0068040-mRNA-1 |
| chr1_2 | five_prime_UTR | 33542427 | 33542503 | 33542427 | ID=Msa0068040-mRNA-1:five_prime_utr;Parent=Msa0068040-mRNA-1 |
| chr1_2 | five_prime_UTR | 33542167 | 33542203 | 33542167 | ID=Msa0068040-mRNA-1:five_prime_utr;Parent=Msa0068040-mRNA-1 |
| chr1_2 | five_prime_UTR | 33541715 | 33541752 | 33541715 | ID=Msa0068040-mRNA-1:five_prime_utr;Parent=Msa0068040-mRNA-1 |
| chr1_2 | five_prime_UTR | 33541607 | 33541693 | 33541607 | ID=Msa0068040-mRNA-1:five_prime_utr;Parent=Msa0068040-mRNA-1 |
| chr1_2 | CDS | 33541119 | 33541606 | 33541119 | ID=Msa0068040-mRNA-1:cds;Parent=Msa0068040-mRNA-1 |
| chr1_2 | CDS | 33540748 | 33540922 | 33540748 | ID=Msa0068040-mRNA-1:cds;Parent=Msa0068040-mRNA-1 |
| chr1_2 | CDS | 33539493 | 33539642 | 33539493 | ID=Msa0068040-mRNA-1:cds;Parent=Msa0068040-mRNA-1 |
| chr1_2 | CDS | 33539087 | 33539248 | 33539087 | ID=Msa0068040-mRNA-1:cds;Parent=Msa0068040-mRNA-1 |
| chr1_2 | CDS | 33538583 | 33538768 | 33538583 | ID=Msa0068040-mRNA-1:cds;Parent=Msa0068040-mRNA-1 |
| chr1_2 | CDS | 33537466 | 33537588 | 33537466 | ID=Msa0068040-mRNA-1:cds;Parent=Msa0068040-mRNA-1 |
| chr1_2 | CDS | 33536857 | 33536946 | 33536857 | ID=Msa0068040-mRNA-1:cds;Parent=Msa0068040-mRNA-1 |
| chr1_2 | CDS | 33536385 | 33536465 | 33536385 | ID=Msa0068040-mRNA-1:cds;Parent=Msa0068040-mRNA-1 |
| chr1_2 | three_prime_UTR | 33536090 | 33536384 | 33536090 | ID=Msa0068040-mRNA-1:three_prime_utr;Parent=Msa0068040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
