Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0113670 | Msa1244600 | 0.814858 | 1.243602e-51 | -8.615850e-47 |
| Msa0113670 | Msa1353980 | 0.808162 | 3.546161e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 14 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAATGTGTCAAATTTA+TGG | 0.120053 | 1_3:-29687546 | Msa0113680:intron |
| TCCTCAGCTTCCTTCTCTTC+AGG | 0.307530 | 1_3:+29687430 | Msa0113670:intron |
| ATTCAATGTGTCAAATTTAT+GGG | 0.346433 | 1_3:-29687545 | Msa0113680:intron |
| TCAGGAAGTATTATTATGTA+TGG | 0.366794 | 1_3:+29684534 | Msa0113670:intron |
| TGCATGCGTTGCTGATCAAA+TGG | 0.462672 | 1_3:-29687497 | Msa0113680:CDS |
| GAGCTGACTCCTGAGTTCTT+AGG | 0.526727 | 1_3:-29687523 | Msa0113680:intron |
| CACAATGTCTCCTGAAGAGA+AGG | 0.527889 | 1_3:-29687440 | Msa0113680:CDS |
| TGCAGTGATAGCACCTCTCA+TGG | 0.568360 | 1_3:-29684258 | None:intergenic |
| GAGAGACTTGAATGATATGC+TGG | 0.572423 | 1_3:+29684560 | Msa0113670:CDS |
| GCATGCGTTGCTGATCAAAT+GGG | 0.603258 | 1_3:-29687496 | Msa0113680:CDS |
| AGATGCATATTTACCATGAG+AGG | 0.618989 | 1_3:+29684245 | None:intergenic |
| ATGGGAGCTGAACTGAATGA+TGG | 0.623585 | 1_3:-29687478 | Msa0113680:CDS |
| CATGCACTGCCTAAGAACTC+AGG | 0.633921 | 1_3:+29687514 | Msa0113670:CDS |
| GGAGCTGAACTGAATGATGG+TGG | 0.726825 | 1_3:-29687475 | Msa0113680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATTACATCAAAA+TGG | - | chr1_3:29685866-29685885 | None:intergenic | 10.0% |
| !!! | CAAATTTAAGTATTTAATTT+GGG | - | chr1_3:29687373-29687392 | None:intergenic | 10.0% |
| !!! | TAGTTCTTTTCTTTTTTATT+AGG | + | chr1_3:29684723-29684742 | Msa0113670:intron | 15.0% |
| !! | ATTAGGATGATATTATTTAT+TGG | + | chr1_3:29684740-29684759 | Msa0113670:intron | 15.0% |
| !!! | ATTTAGAATTAGATAAATAG+TGG | + | chr1_3:29684772-29684791 | Msa0113670:intron | 15.0% |
| !! | CAAATAAAGAAAACTATTTA+CGG | + | chr1_3:29685764-29685783 | Msa0113670:intron | 15.0% |
| !! | TAGAAATAATTATATCACTT+TGG | - | chr1_3:29686177-29686196 | None:intergenic | 15.0% |
| !! | GCAAATTTAAGTATTTAATT+TGG | - | chr1_3:29687374-29687393 | None:intergenic | 15.0% |
| !! | CTCTTATATTGTTATCTATT+AGG | + | chr1_3:29684435-29684454 | Msa0113670:intron | 20.0% |
| !! | TTATCTATTAGGAATATTGT+TGG | + | chr1_3:29684446-29684465 | Msa0113670:intron | 20.0% |
| !!! | AATTAAAGTCACTAATTTGT+AGG | + | chr1_3:29684472-29684491 | Msa0113670:intron | 20.0% |
| !!! | ATCTGCTTTTTATTTTATTC+AGG | + | chr1_3:29684516-29684535 | Msa0113670:intron | 20.0% |
| !! | GATATTATTTATTGGATCAA+TGG | + | chr1_3:29684748-29684767 | Msa0113670:intron | 20.0% |
| !! | ATTAGATAAATAGTGGTATT+TGG | + | chr1_3:29684779-29684798 | Msa0113670:intron | 20.0% |
| !! | TAAGTTAATAATGAGATACT+AGG | + | chr1_3:29684926-29684945 | Msa0113670:intron | 20.0% |
| !!! | TTTTCTTTGTTTATCAACAA+GGG | + | chr1_3:29685723-29685742 | Msa0113670:intron | 20.0% |
| !! | AGTAAAAGTTGAGATAAATA+AGG | + | chr1_3:29686031-29686050 | Msa0113670:intron | 20.0% |
| !!! | GTTGTGTTTAAGTTTTTTTA+AGG | - | chr1_3:29687223-29687242 | None:intergenic | 20.0% |
| !!! | CTTTTGCTTTAGATCTTTTT+TGG | + | chr1_3:29684348-29684367 | Msa0113670:intron | 25.0% |
| !!! | TCAGGAAGTATTATTATGTA+TGG | + | chr1_3:29684534-29684553 | Msa0113670:intron | 25.0% |
| ! | AAGATTTAATGGTAACAAGA+GGG | - | chr1_3:29685270-29685289 | None:intergenic | 25.0% |
| ! | ACTAATCAAGGAAGATTTAA+TGG | - | chr1_3:29685281-29685300 | None:intergenic | 25.0% |
| ! | AGACTTTATCACTTCAAATT+GGG | - | chr1_3:29685486-29685505 | None:intergenic | 25.0% |
| ! | AAGACTTTATCACTTCAAAT+TGG | - | chr1_3:29685487-29685506 | None:intergenic | 25.0% |
| !!! | CTTTTCTTTGTTTATCAACA+AGG | + | chr1_3:29685722-29685741 | Msa0113670:intron | 25.0% |
| !! | TTTCTTTGTTTATCAACAAG+GGG | + | chr1_3:29685724-29685743 | Msa0113670:intron | 25.0% |
| !!! | ATTTTATTTTGCATCAAACG+AGG | + | chr1_3:29685876-29685895 | Msa0113670:intron | 25.0% |
| !! | AATAAGGATTGAAACTTGTT+AGG | + | chr1_3:29686047-29686066 | Msa0113670:intron | 25.0% |
| ! | AGAATTCATATGGATCAATT+AGG | - | chr1_3:29686105-29686124 | None:intergenic | 25.0% |
| ! | TTATGAAGCTAGAATTCATA+TGG | - | chr1_3:29686115-29686134 | None:intergenic | 25.0% |
| ! | TTGTTATCGTTTAAGGAATT+TGG | - | chr1_3:29686223-29686242 | None:intergenic | 25.0% |
| !! | TATTTTCATAGAGAGAAGTA+AGG | - | chr1_3:29686673-29686692 | None:intergenic | 25.0% |
| ! | AACTAAAACCTAAGAGAAAA+AGG | + | chr1_3:29686697-29686716 | Msa0113670:intron | 25.0% |
| !!! | ATCATGAAAAAGTACTGTTT+GGG | - | chr1_3:29687009-29687028 | None:intergenic | 25.0% |
| !!! | AATCATGAAAAAGTACTGTT+TGG | - | chr1_3:29687010-29687029 | None:intergenic | 25.0% |
| ! | ATGATAAGTAAAGCGTAATA+AGG | + | chr1_3:29687082-29687101 | Msa0113670:intron | 25.0% |
| ! | TTAAAGTAATAAGTCTGAAG+AGG | + | chr1_3:29687256-29687275 | Msa0113670:intron | 25.0% |
| ! | AAATACTTAAATTTGCATGC+TGG | + | chr1_3:29687378-29687397 | Msa0113670:intron | 25.0% |
| GCAATGATAAATCACATTTC+TGG | + | chr1_3:29684278-29684297 | Msa0113670:intron | 30.0% | |
| !! | TACCTAGGATAAGGTTTTAT+TGG | + | chr1_3:29684807-29684826 | Msa0113670:intron | 30.0% |
| GTTAATAATGAGATACTAGG+TGG | + | chr1_3:29684929-29684948 | Msa0113670:intron | 30.0% | |
| GAACAAATTAGTTGTAGTGT+TGG | + | chr1_3:29684983-29685002 | Msa0113670:intron | 30.0% | |
| !! | NNNNNGCTTTGGTTTGAACA+AGG | + | chr1_3:29685195-29685214 | Msa0113670:intron | 30.0% |
| GAAGATTTAATGGTAACAAG+AGG | - | chr1_3:29685271-29685290 | None:intergenic | 30.0% | |
| TGTTGATATTGAAGAAGCAA+CGG | - | chr1_3:29685326-29685345 | None:intergenic | 30.0% | |
| ! | AGAAGTTGTTGTTCAAAATG+AGG | - | chr1_3:29685359-29685378 | None:intergenic | 30.0% |
| GTGATAAAGTCTTCAATCTT+TGG | + | chr1_3:29685494-29685513 | Msa0113670:intron | 30.0% | |
| TAAAGTCTTCAATCTTTGGT+TGG | + | chr1_3:29685498-29685517 | Msa0113670:intron | 30.0% | |
| TTATGAAGATGAGAGATACA+AGG | - | chr1_3:29685581-29685600 | None:intergenic | 30.0% | |
| !! | TTGTTAGTTGTTTCCGTTTT+AGG | - | chr1_3:29685698-29685717 | None:intergenic | 30.0% |
| ! | ATCGACTTTGTTATCGTTTA+AGG | - | chr1_3:29686230-29686249 | None:intergenic | 30.0% |
| TAAACGATAACAAAGTCGAT+CGG | + | chr1_3:29686230-29686249 | Msa0113670:intron | 30.0% | |
| AATCAAGAGTGAAATGCTTT+CGG | - | chr1_3:29686292-29686311 | None:intergenic | 30.0% | |
| AAGCATTTCACTCTTGATTA+TGG | + | chr1_3:29686293-29686312 | Msa0113670:intron | 30.0% | |
| CTAGAGTAGCAATATATCTT+AGG | - | chr1_3:29686358-29686377 | None:intergenic | 30.0% | |
| TATTTAGCTACACATCATCA+TGG | + | chr1_3:29686540-29686559 | Msa0113670:intron | 30.0% | |
| !! | TTTGAGATCCTTTTTCTCTT+AGG | - | chr1_3:29686708-29686727 | None:intergenic | 30.0% |
| TTCCTTGAAGATATGATGTT+GGG | - | chr1_3:29686745-29686764 | None:intergenic | 30.0% | |
| ATTCCTTGAAGATATGATGT+TGG | - | chr1_3:29686746-29686765 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTACAAGATATCGA+AGG | - | chr1_3:29687134-29687153 | None:intergenic | 30.0% |
| ATAAGTAGTTCCAAATTAGC+AGG | + | chr1_3:29687284-29687303 | Msa0113670:intron | 30.0% | |
| ! | TGGTCTTAACATTAGCAACA+TGG | + | chr1_3:29684368-29684387 | Msa0113670:intron | 35.0% |
| TGCTTTACTTGCAAAAACAG+AGG | + | chr1_3:29684586-29684605 | Msa0113670:intron | 35.0% | |
| TCATTGTGATTACTGGTAAG+CGG | - | chr1_3:29684671-29684690 | None:intergenic | 35.0% | |
| ACCAGTAATCACAATGACAA+AGG | + | chr1_3:29684674-29684693 | Msa0113670:intron | 35.0% | |
| TCCTTTGTCATTGTGATTAC+TGG | - | chr1_3:29684678-29684697 | None:intergenic | 35.0% | |
| TCACAATGACAAAGGATGAT+TGG | + | chr1_3:29684682-29684701 | Msa0113670:intron | 35.0% | |
| TGGTATTTGGTATCTTACCT+AGG | + | chr1_3:29684792-29684811 | Msa0113670:intron | 35.0% | |
| TTGGTATCTTACCTAGGATA+AGG | + | chr1_3:29684798-29684817 | Msa0113670:intron | 35.0% | |
| GACCAATAAAACCTTATCCT+AGG | - | chr1_3:29684812-29684831 | None:intergenic | 35.0% | |
| ! | GAATTTCATGAGCATTGTCT+GGG | - | chr1_3:29684860-29684879 | None:intergenic | 35.0% |
| ! | AGAATTTCATGAGCATTGTC+TGG | - | chr1_3:29684861-29684880 | None:intergenic | 35.0% |
| AGACAATGCTCATGAAATTC+TGG | + | chr1_3:29684860-29684879 | Msa0113670:intron | 35.0% | |
| AATAATGAGATACTAGGTGG+TGG | + | chr1_3:29684932-29684951 | Msa0113670:intron | 35.0% | |
| !! | CTAATTTGTTCTTCAGTTGC+AGG | - | chr1_3:29684974-29684993 | None:intergenic | 35.0% |
| ACTGTTACATAGTTACTTGC+TGG | + | chr1_3:29685027-29685046 | Msa0113670:intron | 35.0% | |
| TGGTACTAAAAGAGTTGAGA+TGG | + | chr1_3:29685068-29685087 | Msa0113670:intron | 35.0% | |
| AAAGGAACGGTTACTAATCA+AGG | - | chr1_3:29685293-29685312 | None:intergenic | 35.0% | |
| ! | ATTTTCTTGTTCTCCAAGAG+TGG | + | chr1_3:29685417-29685436 | Msa0113670:intron | 35.0% |
| ! | GTTGATTCAAGCACAAATCA+TGG | - | chr1_3:29685464-29685483 | None:intergenic | 35.0% |
| GGTATCTTGCATGTTTATCA+TGG | + | chr1_3:29685519-29685538 | Msa0113670:intron | 35.0% | |
| TAAGAATGTTGCTGATACTG+AGG | + | chr1_3:29685598-29685617 | Msa0113670:intron | 35.0% | |
| TTATATCACTTTGGACACGA+AGG | - | chr1_3:29686168-29686187 | None:intergenic | 35.0% | |
| ATGCTTTCGGATACTTAATC+AGG | - | chr1_3:29686279-29686298 | None:intergenic | 35.0% | |
| CAATGAGATTCAAGATGCTT+TGG | - | chr1_3:29686403-29686422 | None:intergenic | 35.0% | |
| GTAGCTAAATACCCTTTGTT+GGG | - | chr1_3:29686531-29686550 | None:intergenic | 35.0% | |
| TGTAGCTAAATACCCTTTGT+TGG | - | chr1_3:29686532-29686551 | None:intergenic | 35.0% | |
| !!! | TCATAGAGTGAGATTGGTTT+TGG | - | chr1_3:29686643-29686662 | None:intergenic | 35.0% |
| AGTTCTTCATAGAGTGAGAT+TGG | - | chr1_3:29686649-29686668 | None:intergenic | 35.0% | |
| ATCCCAACATCATATCTTCA+AGG | + | chr1_3:29686740-29686759 | Msa0113670:intron | 35.0% | |
| TATCTTCAAGGAATAGCAAG+TGG | + | chr1_3:29686752-29686771 | Msa0113670:intron | 35.0% | |
| ATCTTCAAGGAATAGCAAGT+GGG | + | chr1_3:29686753-29686772 | Msa0113670:intron | 35.0% | |
| ! | ATGCGAGTTGAGAATTTCAA+AGG | + | chr1_3:29686833-29686852 | Msa0113670:intron | 35.0% |
| TGCTTCTTTGATCAATGTCT+TGG | + | chr1_3:29687031-29687050 | Msa0113670:intron | 35.0% | |
| GCTTCTTTGATCAATGTCTT+GGG | + | chr1_3:29687032-29687051 | Msa0113670:intron | 35.0% | |
| ! | ATTACTCTATCCTTTTGTGC+AGG | - | chr1_3:29687064-29687083 | None:intergenic | 35.0% |
| ! | GGCATTTAACGCTTATTTCT+CGG | + | chr1_3:29687103-29687122 | Msa0113670:intron | 35.0% |
| TTCCAAATTAGCAGGCTAAA+TGG | + | chr1_3:29687292-29687311 | Msa0113670:intron | 35.0% | |
| TTCCATTTAGCCTGCTAATT+TGG | - | chr1_3:29687297-29687316 | None:intergenic | 35.0% | |
| TAAGACATAAAAGTCTGTCC+TGG | + | chr1_3:29687330-29687349 | Msa0113670:intron | 35.0% | |
| ! | GTGTTGTTATGATTTAGTCC+AGG | - | chr1_3:29687351-29687370 | None:intergenic | 35.0% |
| GAAGTCATGCAACTAGAACT+TGG | - | chr1_3:29684310-29684329 | None:intergenic | 40.0% | |
| GAGAGACTTGAATGATATGC+TGG | + | chr1_3:29684560-29684579 | Msa0113670:CDS | 40.0% | |
| ATTACTGGTAAGCGGCATAA+CGG | - | chr1_3:29684663-29684682 | None:intergenic | 40.0% | |
| ATTTGTTCTTCAGTTGCAGG+CGG | - | chr1_3:29684971-29684990 | None:intergenic | 40.0% | |
| ! | CATAGTTACTTGCTGGTAGT+AGG | + | chr1_3:29685034-29685053 | Msa0113670:intron | 40.0% |
| AAGAGGGAAGAAGATGAACA+AGG | - | chr1_3:29685254-29685273 | None:intergenic | 40.0% | |
| TGATATTGAAGAAGCAACGG+TGG | - | chr1_3:29685323-29685342 | None:intergenic | 40.0% | |
| CCAAACATGTTTGAGAGAGT+CGG | - | chr1_3:29685394-29685413 | None:intergenic | 40.0% | |
| !! | TCCAAGAGTGGATTGATTGT+TGG | + | chr1_3:29685429-29685448 | Msa0113670:intron | 40.0% |
| ATGTTGCTGATACTGAGGAT+AGG | + | chr1_3:29685603-29685622 | Msa0113670:intron | 40.0% | |
| CTGAGGATAGGATTCATACT+CGG | + | chr1_3:29685615-29685634 | Msa0113670:intron | 40.0% | |
| TGAGGATAGGATTCATACTC+GGG | + | chr1_3:29685616-29685635 | Msa0113670:intron | 40.0% | |
| ! | ACCATGATCAGCCATGATTT+TGG | + | chr1_3:29685660-29685679 | Msa0113670:intron | 40.0% |
| GATAACTAAACACCATTCCC+CGG | + | chr1_3:29685832-29685851 | Msa0113670:intron | 40.0% | |
| TATTTGTGTATCGTCTCCAC+AGG | + | chr1_3:29685903-29685922 | Msa0113670:intron | 40.0% | |
| ATTTGTGTATCGTCTCCACA+GGG | + | chr1_3:29685904-29685923 | Msa0113670:intron | 40.0% | |
| ATACTTAATCAGGCTGGACA+CGG | - | chr1_3:29686269-29686288 | None:intergenic | 40.0% | |
| TTTCGGATACTTAATCAGGC+TGG | - | chr1_3:29686275-29686294 | None:intergenic | 40.0% | |
| ! | CTTTTCAATCCATCCTTGCA+TGG | - | chr1_3:29686569-29686588 | None:intergenic | 40.0% |
| !! | CATGCAAGGATGGATTGAAA+AGG | + | chr1_3:29686567-29686586 | Msa0113670:intron | 40.0% |
| !! | CAAGGATGGATTGAAAAGGA+AGG | + | chr1_3:29686571-29686590 | Msa0113670:intron | 40.0% |
| !!! | GTGAGATTGGTTTTGGAAGT+TGG | - | chr1_3:29686636-29686655 | None:intergenic | 40.0% |
| !! | AGCAAGTGGGCTATTTATAG+AGG | + | chr1_3:29686766-29686785 | Msa0113670:intron | 40.0% |
| ATTCCAGAGAGATACGCTAT+TGG | + | chr1_3:29686856-29686875 | Msa0113670:intron | 40.0% | |
| TTTGTTCTTCAGTTGCAGGC+GGG | - | chr1_3:29684970-29684989 | None:intergenic | 45.0% | |
| ! | TACTTGCTGGTAGTAGGTTG+TGG | + | chr1_3:29685040-29685059 | Msa0113670:intron | 45.0% |
| ! | ACTTGCTGGTAGTAGGTTGT+GGG | + | chr1_3:29685041-29685060 | Msa0113670:intron | 45.0% |
| CGGTGGTTGAGAAAAAGGAA+CGG | - | chr1_3:29685306-29685325 | None:intergenic | 45.0% | |
| AGCAACGGTGGTTGAGAAAA+AGG | - | chr1_3:29685311-29685330 | None:intergenic | 45.0% | |
| CCGACTCTCTCAAACATGTT+TGG | + | chr1_3:29685391-29685410 | Msa0113670:intron | 45.0% | |
| GCCAACAATCAATCCACTCT+TGG | - | chr1_3:29685433-29685452 | None:intergenic | 45.0% | |
| !! | GAGTGGATTGATTGTTGGCT+TGG | + | chr1_3:29685434-29685453 | Msa0113670:intron | 45.0% |
| GCCAAAATCATGGCTGATCA+TGG | - | chr1_3:29685664-29685683 | None:intergenic | 45.0% | |
| !!! | GATCAGCCATGATTTTGGCT+AGG | + | chr1_3:29685665-29685684 | Msa0113670:intron | 45.0% |
| TCACCACCTAGCCAAAATCA+TGG | - | chr1_3:29685674-29685693 | None:intergenic | 45.0% | |
| GCTAGGTGGTGATCCTAAAA+CGG | + | chr1_3:29685682-29685701 | Msa0113670:intron | 45.0% | |
| ! | TGATAACGCACTATTCCCTG+TGG | - | chr1_3:29685922-29685941 | None:intergenic | 45.0% |
| TTACGTGTGACGCTTGGTTA+AGG | - | chr1_3:29686082-29686101 | None:intergenic | 45.0% | |
| ATTAGGTTACGTGTGACGCT+TGG | - | chr1_3:29686088-29686107 | None:intergenic | 45.0% | |
| AGTACCTCTCATCCCAACAA+AGG | + | chr1_3:29686516-29686535 | Msa0113670:intron | 45.0% | |
| GTACCTCTCATCCCAACAAA+GGG | + | chr1_3:29686517-29686536 | Msa0113670:intron | 45.0% | |
| ATACCCTTTGTTGGGATGAG+AGG | - | chr1_3:29686523-29686542 | None:intergenic | 45.0% | |
| ATCATCATGGAAGCCATGCA+AGG | + | chr1_3:29686553-29686572 | Msa0113670:intron | 45.0% | |
| AGATACGCTATTGGCGTATC+TGG | + | chr1_3:29686865-29686884 | Msa0113670:intron | 45.0% | |
| GATACGCTATTGGCGTATCT+GGG | + | chr1_3:29686866-29686885 | Msa0113670:intron | 45.0% | |
| TGGGCTAATTCCTGCACAAA+AGG | + | chr1_3:29687051-29687070 | Msa0113670:intron | 45.0% | |
| CACAATGTCTCCTGAAGAGA+AGG | - | chr1_3:29687443-29687462 | Msa0113680:CDS | 45.0% | |
| ATGGGAGCTGAACTGAATGA+TGG | - | chr1_3:29687481-29687500 | Msa0113680:CDS | 45.0% | |
| GCATGCGTTGCTGATCAAAT+GGG | - | chr1_3:29687499-29687518 | Msa0113680:CDS | 45.0% | |
| TGCATGCGTTGCTGATCAAA+TGG | - | chr1_3:29687500-29687519 | Msa0113680:CDS | 45.0% | |
| CTTGCTGGTAGTAGGTTGTG+GGG | + | chr1_3:29685042-29685061 | Msa0113670:intron | 50.0% | |
| GGTAGTAGGTTGTGGGGATT+TGG | + | chr1_3:29685048-29685067 | Msa0113670:intron | 50.0% | |
| GGATAGGATTCATACTCGGG+TGG | + | chr1_3:29685619-29685638 | Msa0113670:intron | 50.0% | |
| !!! | CAGCCATGATTTTGGCTAGG+TGG | + | chr1_3:29685668-29685687 | Msa0113670:intron | 50.0% |
| TAAACACCATTCCCCGGCAA+CGG | + | chr1_3:29685838-29685857 | Msa0113670:intron | 50.0% | |
| TCATGGAAGCCATGCAAGGA+TGG | + | chr1_3:29686557-29686576 | Msa0113670:intron | 50.0% | |
| ACGCCAATAGCGTATCTCTC+TGG | - | chr1_3:29686862-29686881 | None:intergenic | 50.0% | |
| ATTTGCGAGCTACTCGCAAC+AGG | + | chr1_3:29686929-29686948 | Msa0113670:intron | 50.0% | |
| TCCTCAGCTTCCTTCTCTTC+AGG | + | chr1_3:29687430-29687449 | Msa0113670:intron | 50.0% | |
| TCCTGAAGAGAAGGAAGCTG+AGG | - | chr1_3:29687434-29687453 | Msa0113680:CDS | 50.0% | |
| GGAGCTGAACTGAATGATGG+TGG | - | chr1_3:29687478-29687497 | Msa0113680:CDS | 50.0% | |
| CATGCACTGCCTAAGAACTC+AGG | + | chr1_3:29687514-29687533 | Msa0113670:CDS | 50.0% | |
| ! | GAGCTGACTCCTGAGTTCTT+AGG | - | chr1_3:29687526-29687545 | Msa0113680:intron | 50.0% |
| ATCAAAATGGCGCCGTTGCC+GGG | - | chr1_3:29685853-29685872 | None:intergenic | 55.0% | |
| CATCAAAATGGCGCCGTTGC+CGG | - | chr1_3:29685854-29685873 | None:intergenic | 55.0% | |
| TCTCAACTCGCATCTGCGAG+TGG | - | chr1_3:29686826-29686845 | None:intergenic | 55.0% | |
| TTGCTCGCACCTGCGAGTAA+GGG | - | chr1_3:29686899-29686918 | None:intergenic | 55.0% | |
| TTACTCGCAGGTGCGAGCAA+GGG | + | chr1_3:29686899-29686918 | Msa0113670:intron | 55.0% | |
| TTGCGAGCTACATGCCTCCA+TGG | + | chr1_3:29686973-29686992 | Msa0113670:intron | 55.0% | |
| GTTTGGGCAGAAGCTGTCCA+TGG | - | chr1_3:29686993-29687012 | None:intergenic | 55.0% | |
| TCAAAATGGCGCCGTTGCCG+GGG | - | chr1_3:29685852-29685871 | None:intergenic | 60.0% | |
| ATAGAGGTCTGCCCTGCCTG+AGG | + | chr1_3:29686782-29686801 | Msa0113670:intron | 60.0% | |
| CTTGCTCGCACCTGCGAGTA+AGG | - | chr1_3:29686900-29686919 | None:intergenic | 60.0% | |
| CTTACTCGCAGGTGCGAGCA+AGG | + | chr1_3:29686898-29686917 | Msa0113670:intron | 60.0% | |
| TGGGCAGAAGCTGTCCATGG+AGG | - | chr1_3:29686990-29687009 | None:intergenic | 60.0% | |
| TAGCTCGCAGCTGCGACCTC+AGG | - | chr1_3:29686801-29686820 | None:intergenic | 65.0% | |
| GGCAAACCGCCCTTACTCGC+AGG | + | chr1_3:29686887-29686906 | Msa0113670:intron | 65.0% | |
| CTCGCACCTGCGAGTAAGGG+CGG | - | chr1_3:29686896-29686915 | None:intergenic | 65.0% | |
| ATGGCGCCGTTGCCGGGGAA+TGG | - | chr1_3:29685847-29685866 | None:intergenic | 70.0% | |
| CGCAGCTGCGACCTCAGGCA+GGG | - | chr1_3:29686796-29686815 | None:intergenic | 70.0% | |
| TCGCAGCTGCGACCTCAGGC+AGG | - | chr1_3:29686797-29686816 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 29684260 | 29687565 | 29684260 | ID=Msa0113670;Name=Msa0113670 |
| chr1_3 | mRNA | 29684260 | 29687565 | 29684260 | ID=Msa0113670-mRNA-1;Parent=Msa0113670;Name=Msa0113670-mRNA-1;_AED=0.98;_eAED=0.98;_QI=0|0|0|0.25|0.33|0.75|4|0|61 |
| chr1_3 | exon | 29684260 | 29684266 | 29684260 | ID=Msa0113670-mRNA-1:exon:9829;Parent=Msa0113670-mRNA-1 |
| chr1_3 | exon | 29684538 | 29684581 | 29684538 | ID=Msa0113670-mRNA-1:exon:9830;Parent=Msa0113670-mRNA-1 |
| chr1_3 | exon | 29684814 | 29684819 | 29684814 | ID=Msa0113670-mRNA-1:exon:9831;Parent=Msa0113670-mRNA-1 |
| chr1_3 | exon | 29687437 | 29687565 | 29687437 | ID=Msa0113670-mRNA-1:exon:9832;Parent=Msa0113670-mRNA-1 |
| chr1_3 | CDS | 29684260 | 29684266 | 29684260 | ID=Msa0113670-mRNA-1:cds;Parent=Msa0113670-mRNA-1 |
| chr1_3 | CDS | 29684538 | 29684581 | 29684538 | ID=Msa0113670-mRNA-1:cds;Parent=Msa0113670-mRNA-1 |
| chr1_3 | CDS | 29684814 | 29684819 | 29684814 | ID=Msa0113670-mRNA-1:cds;Parent=Msa0113670-mRNA-1 |
| chr1_3 | CDS | 29687437 | 29687565 | 29687437 | ID=Msa0113670-mRNA-1:cds;Parent=Msa0113670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
