AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1353980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353980 MtrunA17_Chr8g0390851 99.099 333 1 1 1 331 351 683 0.0 676
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353980 AT3G18480.1 81.627 332 58 2 1 331 360 689 0.0 548

Find 79 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGAGCAAAATGAAAATTT+TGG 0.179567 tig0014105:+24446 None:intergenic
GAAAGTTCCTTTATGATCTT+TGG 0.215035 tig0014105:+26831 None:intergenic
AGAGAACCTGATTAACATTT+AGG 0.224866 tig0014105:-24519 Msa1353980:three_prime_UTR
TTCACATTTAACAGGAAATA+AGG 0.255632 tig0014105:-26188 Msa1353980:intron
AGGCAGTTGAAGGAGAAAAT+TGG 0.293467 tig0014105:-26168 Msa1353980:CDS
GATACAAGGAGTTGGGATTC+AGG 0.303649 tig0014105:-25188 Msa1353980:CDS
GGCAGTTGAAGGAGAAAATT+GGG 0.322531 tig0014105:-26167 Msa1353980:CDS
TGTCAGCTTTGAGTTATCTA+AGG 0.361924 tig0014105:-24856 Msa1353980:intron
CGAGCTTTGATCTTGATCTA+AGG 0.368854 tig0014105:+26388 None:intergenic
ATGTTGAGAAAGTGGTTTCC+AGG 0.371057 tig0014105:-26065 Msa1353980:CDS
TGAAATCATGGTTAAATGTA+TGG 0.382897 tig0014105:+24543 None:intergenic
TCCTTTATGATCTTTGGAAC+TGG 0.384238 tig0014105:+26837 None:intergenic
CTTTCTCAACATTATAGTCT+TGG 0.389435 tig0014105:+26076 None:intergenic
TATAAAAGAATGCAAAAGTT+CGG 0.398780 tig0014105:+24921 None:intergenic
GGCAATGAAGAAAGAGCTTC+AGG 0.400714 tig0014105:-27664 None:intergenic
AAGTATCCTAAATGTTAATC+AGG 0.408287 tig0014105:+24513 None:intergenic
GCAGTCAGAGAGATCGATTT+AGG 0.415746 tig0014105:-26349 Msa1353980:CDS
ATAAAAGAATGCAAAAGTTC+GGG 0.416558 tig0014105:+24922 None:intergenic
TACAATCGGGTTGCATGTCT+TGG 0.416848 tig0014105:-24900 Msa1353980:CDS
CAACACCTTCTTAGAACCCC+TGG 0.427405 tig0014105:+26047 None:intergenic
GGGATCTATCAGAGGCTAAT+CGG 0.429590 tig0014105:-26798 Msa1353980:CDS
AGACTATAATGTTGAGAAAG+TGG 0.435617 tig0014105:-26073 Msa1353980:CDS
TAGTGTAAAGGCTTTGAATC+CGG 0.436355 tig0014105:-24574 Msa1353980:three_prime_UTR
AAGGAACTTTCCTTGATGAC+TGG 0.453666 tig0014105:-26819 Msa1353980:CDS
TCAGGTTCTCTCTGAAATCA+TGG 0.456646 tig0014105:+24531 None:intergenic
TCCAGTTCCAAAGATCATAA+AGG 0.457304 tig0014105:-26838 Msa1353980:CDS
ATTCAATTGAGGCTGAAGAC+TGG 0.460183 tig0014105:-27475 Msa1353980:CDS
GCAGATAATGTTAAACTGTA+CGG 0.472098 tig0014105:-26114 Msa1353980:CDS
ACAGGAAATAAGGCAGTTGA+AGG 0.475055 tig0014105:-26178 Msa1353980:intron
ATACAAGGAGTTGGGATTCA+GGG 0.479433 tig0014105:-25187 Msa1353980:CDS
GATCAAAGATACAAGGAGTT+GGG 0.483830 tig0014105:-25195 Msa1353980:CDS
GGTTTCCAGGGGTTCTAAGA+AGG 0.490914 tig0014105:-26052 Msa1353980:intron
AGATCAAAGATACAAGGAGT+TGG 0.502305 tig0014105:-25196 Msa1353980:CDS
CAGATAATGTTAAACTGTAC+GGG 0.503919 tig0014105:-26113 Msa1353980:CDS
CTGATAGATCCCAGTCATCA+AGG 0.512241 tig0014105:+26809 None:intergenic
AGCAGCGGACGATTTCTTCT+CGG 0.512425 tig0014105:-25150 Msa1353980:CDS
GCTCATCTCCTCCCCACTTG+TGG 0.514899 tig0014105:+27445 None:intergenic
TTCAATTGAGGCTGAAGACT+GGG 0.516424 tig0014105:-27474 Msa1353980:CDS
AGCTGACATTCTGTAGAGAC+AGG 0.526667 tig0014105:+24871 None:intergenic
TCATTACATTAAACGACCAC+TGG 0.534417 tig0014105:+24676 None:intergenic
ACACGAGCTAACACAGTTGA+AGG 0.534521 tig0014105:-27381 Msa1353980:intron
AGGAACTTTCCTTGATGACT+GGG 0.534962 tig0014105:-26818 Msa1353980:CDS
AAGACACGTGAGAGATAAGT+AGG 0.535475 tig0014105:+24469 None:intergenic
TGTTGAGAAAGTGGTTTCCA+GGG 0.535552 tig0014105:-26064 Msa1353980:CDS
GGCTCAGATGAAACACTGGC+TGG 0.536356 tig0014105:-24751 Msa1353980:CDS
GACTGGGAAGTGGCCACAAG+TGG 0.542533 tig0014105:-27458 Msa1353980:CDS
CAGTCCACGTGGAAGATCAA+TGG 0.546836 tig0014105:+24720 None:intergenic
GGTGGCAGAACTTTCAGCTA+AGG 0.546982 tig0014105:-27039 Msa1353980:CDS
TATGCAGAAGATCTTGAAAG+TGG 0.552427 tig0014105:-25929 Msa1353980:CDS
TAAATGTATGGACACGACTC+CGG 0.553598 tig0014105:+24555 None:intergenic
AGTGGGTTATAATTCAATTG+AGG 0.558132 tig0014105:-27486 Msa1353980:CDS
ATCTTCCACGTGGACTGTAG+TGG 0.562365 tig0014105:-24714 Msa1353980:exon
ATCATCAGAATATGGATCAA+AGG 0.565231 tig0014105:-26415 Msa1353980:intron
AGAGGCGATTTCTAGTGTAA+AGG 0.569008 tig0014105:-24586 Msa1353980:three_prime_UTR
GTTGGAAGATGATATATCCA+AGG 0.569133 tig0014105:-26988 Msa1353980:intron
ACTCGAAACAGCCGAGCAGA+AGG 0.575671 tig0014105:-27060 Msa1353980:CDS
GGAAGTGGCCACAAGTGGGG+AGG 0.576452 tig0014105:-27453 Msa1353980:CDS
TGAGGCTGAAGACTGGGAAG+TGG 0.578334 tig0014105:-27468 Msa1353980:CDS
CTGGGAAGTGGCCACAAGTG+GGG 0.580493 tig0014105:-27456 Msa1353980:CDS
TGGGGAGGAGATGAGCAAGA+TGG 0.591522 tig0014105:-27438 Msa1353980:CDS
GGAAAGAGATCAAAGATACA+AGG 0.597550 tig0014105:-25202 Msa1353980:CDS
CGAAACAGCCGAGCAGAAGG+TGG 0.605027 tig0014105:-27057 Msa1353980:CDS
TGGTCATACATTCAGGCAGT+GGG 0.605843 tig0014105:-27503 Msa1353980:intron
TCTTCCACGTGGACTGTAGT+GGG 0.607239 tig0014105:-24713 Msa1353980:exon
AAGTTCTGCCACCTTCTGCT+CGG 0.610438 tig0014105:+27049 None:intergenic
TAATCGGAGTGAGGTGTCTG+AGG 0.620394 tig0014105:-26782 Msa1353980:intron
TCATGGCTCAGATGAAACAC+TGG 0.624075 tig0014105:-24755 Msa1353980:CDS
ACTGGGAAGTGGCCACAAGT+GGG 0.638410 tig0014105:-27457 Msa1353980:CDS
GTTGAGAAAGTGGTTTCCAG+GGG 0.643846 tig0014105:-26063 Msa1353980:CDS
GACAGAATCACACTCAGCAG+CGG 0.644787 tig0014105:-25165 Msa1353980:CDS
TGATGACTGGGATCTATCAG+AGG 0.646009 tig0014105:-26806 Msa1353980:CDS
ACGCTTGAGAGAGACAGAAG+AGG 0.662085 tig0014105:-26324 Msa1353980:intron
ATCAGAGGCTAATCGGAGTG+AGG 0.670414 tig0014105:-26791 Msa1353980:CDS
GGTATACAATCTACTTCCAG+TGG 0.675971 tig0014105:-24692 Msa1353980:three_prime_UTR
GCAGTTGAAGGAGAAAATTG+GGG 0.693185 tig0014105:-26166 Msa1353980:CDS
GAAAATTGGGGTATTAACAG+CGG 0.709114 tig0014105:-26154 Msa1353980:CDS
AGAACCATTGATCTTCCACG+TGG 0.765127 tig0014105:-24724 Msa1353980:CDS
AAAATACAAGAAGATATACG+AGG 0.768531 tig0014105:-25885 Msa1353980:CDS
TATACCCACTACAGTCCACG+TGG 0.774860 tig0014105:+24709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTAATAAATAAAATACTT+CGG + tig0014105:25222-25241 None:intergenic 10.0%
!! ATAATTAATGAAAACTAATT+AGG + tig0014105:25491-25510 None:intergenic 10.0%
!! TAATTTATATCTAAACTATA+AGG - tig0014105:26557-26576 Msa1353980:intron 10.0%
!! TTAGTTTCTTAAAAATATTG+TGG + tig0014105:24796-24815 None:intergenic 15.0%
!!! AAAACTAATTAGGTTTTATA+GGG + tig0014105:25481-25500 None:intergenic 15.0%
!!! TTAGTTTTCATTAATTATCT+TGG - tig0014105:25493-25512 Msa1353980:intron 15.0%
!!! TAGTTTTCATTAATTATCTT+GGG - tig0014105:25494-25513 Msa1353980:intron 15.0%
!! TTTATAGTTAATATTGGTAT+AGG - tig0014105:25814-25833 Msa1353980:intron 15.0%
!!! ATTTTAGACAAAAATTAATG+TGG + tig0014105:26372-26391 None:intergenic 15.0%
!!! AAATTTTATAGATTTGAATG+TGG + tig0014105:26403-26422 None:intergenic 15.0%
!! TATAAAAAATTCCATTTAGA+AGG + tig0014105:27036-27055 None:intergenic 15.0%
!! ATTATACTCTTCATTTCAAA+TGG - tig0014105:24529-24548 Msa1353980:three_prime_UTR 20.0%
!!! ATCATTGATTTATAGTAATG+AGG - tig0014105:24757-24776 Msa1353980:CDS 20.0%
!! TTTCTTAAAAATATTGTGGA+TGG + tig0014105:24792-24811 None:intergenic 20.0%
!!! CACATAATTTTGACTATATT+TGG - tig0014105:24838-24857 Msa1353980:intron 20.0%
!! TAATAAATAAAATACTTCGG+AGG + tig0014105:25219-25238 None:intergenic 20.0%
!!! GTTGATGAAATTATGATATT+TGG + tig0014105:25416-25435 None:intergenic 20.0%
!!! GAAAACTAATTAGGTTTTAT+AGG + tig0014105:25482-25501 None:intergenic 20.0%
!! GGTATGTTTATAGTTAATAT+TGG - tig0014105:25808-25827 Msa1353980:intron 20.0%
!!! TTTTTATTTTAATATGACGG+TGG - tig0014105:25886-25905 Msa1353980:CDS 20.0%
!! TGAAGATAAAAACTAGATTA+TGG + tig0014105:26130-26149 None:intergenic 20.0%
!!! ATCTAGTTTTTATCTTCAAT+TGG - tig0014105:26132-26151 Msa1353980:CDS 20.0%
!! AAAATAAAATGCTTCACTTA+GGG + tig0014105:26316-26335 None:intergenic 20.0%
!! AAAAATAAAATGCTTCACTT+AGG + tig0014105:26317-26336 None:intergenic 20.0%
!! CTAACATGTATATTTATGAA+TGG + tig0014105:26659-26678 None:intergenic 20.0%
!! TTGTCAAATCAATAAAAAAC+TGG - tig0014105:26685-26704 Msa1353980:intron 20.0%
!!! GGAATTTTTTATATCGTTTA+TGG - tig0014105:27043-27062 Msa1353980:CDS 20.0%
!!! AAATAAAAAAGCGTGTTTAT+GGG - tig0014105:27077-27096 Msa1353980:CDS 20.0%
!! TTAAAAAACGAAACAATATC+TGG + tig0014105:27106-27125 None:intergenic 20.0%
!! TGATTAAAATTATGCTTTAC+AGG - tig0014105:27162-27181 Msa1353980:intron 20.0%
!! TATAAAAGAATGCAAAAGTT+CGG + tig0014105:27193-27212 None:intergenic 20.0%
!!! TTTGCATTCTTTTATACAAT+CGG - tig0014105:27197-27216 Msa1353980:intron 20.0%
!!! TCATCAACTATTTTTTCAGT+TGG + tig0014105:24478-24497 None:intergenic 25.0%
!! CAAGAAAGTAAAAATTTTGC+AGG - tig0014105:24504-24523 Msa1353980:three_prime_UTR 25.0%
!! TTTTATGTAACATCTTCTCT+TGG - tig0014105:24554-24573 Msa1353980:three_prime_UTR 25.0%
! TTTATGTAACATCTTCTCTT+GGG - tig0014105:24555-24574 Msa1353980:three_prime_UTR 25.0%
! TTGTGTATTTGAACATGTTA+TGG - tig0014105:24904-24923 Msa1353980:CDS 25.0%
! TGTGTATTTGAACATGTTAT+GGG - tig0014105:24905-24924 Msa1353980:CDS 25.0%
! GTCTTATAAAGCAAATAACA+TGG + tig0014105:24939-24958 None:intergenic 25.0%
! AATACCTATAGATCATATCA+AGG + tig0014105:24966-24985 None:intergenic 25.0%
! ACAAAAACTGATACAAAAGT+TGG - tig0014105:25105-25124 Msa1353980:intron 25.0%
! TCTTCTATTAGTGATTGATA+TGG + tig0014105:25180-25199 None:intergenic 25.0%
!! ATGAAAAGCATATTGGAAAA+AGG + tig0014105:25361-25380 None:intergenic 25.0%
! AACAGTAATAAAACACCAAT+GGG + tig0014105:25455-25474 None:intergenic 25.0%
! AAACAGTAATAAAACACCAA+TGG + tig0014105:25456-25475 None:intergenic 25.0%
! ATTCAAATGATGTAGATTGT+AGG + tig0014105:25655-25674 None:intergenic 25.0%
! GGAAATAATGTCAAATAGAA+AGG + tig0014105:25859-25878 None:intergenic 25.0%
!! GTGAATTTTTCACATTTAAC+AGG - tig0014105:25915-25934 Msa1353980:CDS 25.0%
! TTCACATTTAACAGGAAATA+AGG - tig0014105:25923-25942 Msa1353980:CDS 25.0%
! GATAAAAACTAGATTATGGA+GGG + tig0014105:26126-26145 None:intergenic 25.0%
! AGATAAAAACTAGATTATGG+AGG + tig0014105:26127-26146 None:intergenic 25.0%
! AAAATACAAGAAGATATACG+AGG - tig0014105:26226-26245 Msa1353980:intron 25.0%
! AAGCAATTATGTGAAGAAAA+TGG + tig0014105:26292-26311 None:intergenic 25.0%
! AAATAAAATGCTTCACTTAG+GGG + tig0014105:26315-26334 None:intergenic 25.0%
! ATGTATGACTTAAGTTATCT+TGG + tig0014105:26444-26463 None:intergenic 25.0%
! ATATATCTAGTAATTAGCTC+TGG - tig0014105:26616-26635 Msa1353980:intron 25.0%
! TGAATTGCAAGAACTAAAAA+AGG + tig0014105:27004-27023 None:intergenic 25.0%
!! GAAATAAAAAAGCGTGTTTA+TGG - tig0014105:27076-27095 Msa1353980:CDS 25.0%
! ATAAAAGAATGCAAAAGTTC+GGG + tig0014105:27192-27211 None:intergenic 25.0%
!! TTGCATTCTTTTATACAATC+GGG - tig0014105:27198-27217 Msa1353980:intron 25.0%
!! ATAGCGTTTTATATATAGAG+AGG - tig0014105:27507-27526 Msa1353980:intron 25.0%
! TGAAATCATGGTTAAATGTA+TGG + tig0014105:27571-27590 None:intergenic 25.0%
! AAGTATCCTAAATGTTAATC+AGG + tig0014105:27601-27620 None:intergenic 25.0%
!! AGTGGGTTATAATTCAATTG+AGG - tig0014105:24625-24644 Msa1353980:three_prime_UTR 30.0%
TCTTGATAAGAACCGAAAAA+TGG - tig0014105:24706-24725 Msa1353980:exon 30.0%
TGTTCAAATACACAAGATAC+AGG + tig0014105:24899-24918 None:intergenic 30.0%
TGTTCCTTGATATGATCTAT+AGG - tig0014105:24959-24978 Msa1353980:intron 30.0%
AAGATGATATATCCAAGGTT+TGG - tig0014105:25128-25147 Msa1353980:intron 30.0%
ATAGTAATTGTTCCAAACCT+TGG + tig0014105:25143-25162 None:intergenic 30.0%
AGTGATTGATATGGTAATAG+AGG + tig0014105:25171-25190 None:intergenic 30.0%
GAAAGTTCCTTTATGATCTT+TGG + tig0014105:25283-25302 None:intergenic 30.0%
ACAGTCGCAACAAAATTATA+CGG + tig0014105:25545-25564 None:intergenic 30.0%
ATCATCAGAATATGGATCAA+AGG - tig0014105:25696-25715 Msa1353980:intron 30.0%
GCAGATAATGTTAAACTGTA+CGG - tig0014105:25997-26016 Msa1353980:intron 30.0%
CAGATAATGTTAAACTGTAC+GGG - tig0014105:25998-26017 Msa1353980:intron 30.0%
CTTTCTCAACATTATAGTCT+TGG + tig0014105:26038-26057 None:intergenic 30.0%
AGACTATAATGTTGAGAAAG+TGG - tig0014105:26038-26057 Msa1353980:intron 30.0%
!!! TTTTTTGAGAATGCAGCAAA+AGG + tig0014105:26263-26282 None:intergenic 30.0%
! TTTTGCTGCATTCTCAAAAA+AGG - tig0014105:26262-26281 Msa1353980:intron 30.0%
TTATCTGTCATGCATGTAAT+AGG - tig0014105:26888-26907 Msa1353980:intron 30.0%
CATTGATACATCCTTCTAAA+TGG - tig0014105:27022-27041 Msa1353980:CDS 30.0%
!!! ACACGCTTTTTTATTTCCTT+TGG + tig0014105:27073-27092 None:intergenic 30.0%
AGAGAACCTGATTAACATTT+AGG - tig0014105:27592-27611 Msa1353980:intron 30.0%
ATGTATGACCATGAGTTAGA+TGG + tig0014105:24599-24618 None:intergenic 35.0%
TAACTCATGGTCATACATTC+AGG - tig0014105:24601-24620 Msa1353980:three_prime_UTR 35.0%
!! TTAGCTCGTGTTCCATTTTT+CGG + tig0014105:24721-24740 None:intergenic 35.0%
!! GATGTAGTTCTACTGTTTTC+AGG - tig0014105:25003-25022 Msa1353980:intron 35.0%
GTTGGAAGATGATATATCCA+AGG - tig0014105:25123-25142 Msa1353980:intron 35.0%
TACTTCGGAGGAAAATAAAG+AGG + tig0014105:25207-25226 None:intergenic 35.0%
TCCAGTTCCAAAGATCATAA+AGG - tig0014105:25273-25292 Msa1353980:intron 35.0%
!! TCCTTTATGATCTTTGGAAC+TGG + tig0014105:25277-25296 None:intergenic 35.0%
CTTCACAAATAAGTACACCA+CGG + tig0014105:25385-25404 None:intergenic 35.0%
! TTTTAATATGACGGTGGACA+TGG - tig0014105:25892-25911 Msa1353980:CDS 35.0%
TTTAATATGACGGTGGACAT+GGG - tig0014105:25893-25912 Msa1353980:CDS 35.0%
! GAAAATTGGGGTATTAACAG+CGG - tig0014105:25957-25976 Msa1353980:intron 35.0%
TATGCAGAAGATCTTGAAAG+TGG - tig0014105:26182-26201 Msa1353980:intron 35.0%
GGAAAGAGATCAAAGATACA+AGG - tig0014105:26909-26928 Msa1353980:intron 35.0%
AGATCAAAGATACAAGGAGT+TGG - tig0014105:26915-26934 Msa1353980:intron 35.0%
GATCAAAGATACAAGGAGTT+GGG - tig0014105:26916-26935 Msa1353980:intron 35.0%
!! TGTCAGCTTTGAGTTATCTA+AGG - tig0014105:27255-27274 Msa1353980:intron 35.0%
CTTGTCATTCTATACAGTCA+TGG - tig0014105:27339-27358 Msa1353980:intron 35.0%
TCATTACATTAAACGACCAC+TGG + tig0014105:27438-27457 None:intergenic 35.0%
!! TAGTGTAAAGGCTTTGAATC+CGG - tig0014105:27537-27556 Msa1353980:intron 35.0%
TGCACTATCCATCTAACTCA+TGG - tig0014105:24588-24607 Msa1353980:three_prime_UTR 40.0%
ATTCAATTGAGGCTGAAGAC+TGG - tig0014105:24636-24655 Msa1353980:three_prime_UTR 40.0%
TTCAATTGAGGCTGAAGACT+GGG - tig0014105:24637-24656 Msa1353980:three_prime_UTR 40.0%
CTAATAGTCCATGGCTTCTT+GGG + tig0014105:24872-24891 None:intergenic 40.0%
ACTAATAGTCCATGGCTTCT+TGG + tig0014105:24873-24892 None:intergenic 40.0%
! AAGGAACTTTCCTTGATGAC+TGG - tig0014105:25292-25311 Msa1353980:intron 40.0%
! AGGAACTTTCCTTGATGACT+GGG - tig0014105:25293-25312 Msa1353980:intron 40.0%
! CCACGGTATGAAAAGCATAT+TGG + tig0014105:25368-25387 None:intergenic 40.0%
! CCAATATGCTTTTCATACCG+TGG - tig0014105:25365-25384 Msa1353980:intron 40.0%
GAAGATATGCTGTATCCCAT+TGG - tig0014105:25437-25456 Msa1353980:intron 40.0%
TGTTGCGACTGTTTATGCAT+TGG - tig0014105:25553-25572 Msa1353980:intron 40.0%
CTGATGCAATTATAACCCTG+TGG - tig0014105:25618-25637 Msa1353980:intron 40.0%
TAGGTAGATGTTTCACCACA+GGG + tig0014105:25636-25655 None:intergenic 40.0%
GCTTCTGCATCATCAGAATA+TGG - tig0014105:25688-25707 Msa1353980:intron 40.0%
! CGAGCTTTGATCTTGATCTA+AGG + tig0014105:25726-25745 None:intergenic 40.0%
ACAGGAAATAAGGCAGTTGA+AGG - tig0014105:25933-25952 Msa1353980:intron 40.0%
AGGCAGTTGAAGGAGAAAAT+TGG - tig0014105:25943-25962 Msa1353980:intron 40.0%
GGCAGTTGAAGGAGAAAATT+GGG - tig0014105:25944-25963 Msa1353980:intron 40.0%
GCAGTTGAAGGAGAAAATTG+GGG - tig0014105:25945-25964 Msa1353980:intron 40.0%
ATGTTGAGAAAGTGGTTTCC+AGG - tig0014105:26046-26065 Msa1353980:intron 40.0%
TGTTGAGAAAGTGGTTTCCA+GGG - tig0014105:26047-26066 Msa1353980:intron 40.0%
TGCTGCATTCTCAAAAAAGG+TGG - tig0014105:26265-26284 Msa1353980:intron 40.0%
GCTGCATTCTCAAAAAAGGT+GGG - tig0014105:26266-26285 Msa1353980:intron 40.0%
! TTCTACCTATTTGAAGCTCG+AGG - tig0014105:26483-26502 Msa1353980:intron 40.0%
AACATCCTCGAGCTTCAAAT+AGG + tig0014105:26491-26510 None:intergenic 40.0%
TAAGGTAAAGAGGAAGAGAG+GGG + tig0014105:26751-26770 None:intergenic 40.0%
GTAAGGTAAAGAGGAAGAGA+GGG + tig0014105:26752-26771 None:intergenic 40.0%
TGTAAGGTAAAGAGGAAGAG+AGG + tig0014105:26753-26772 None:intergenic 40.0%
CTCTTCCTCTTTACCTTACA+CGG - tig0014105:26753-26772 Msa1353980:intron 40.0%
TTTACCTTACACGGAGAGTA+TGG - tig0014105:26762-26781 Msa1353980:intron 40.0%
AAACCAATTGCCTCCTTATC+TGG + tig0014105:26813-26832 None:intergenic 40.0%
ATACAAGGAGTTGGGATTCA+GGG - tig0014105:26924-26943 Msa1353980:intron 40.0%
TATCGTTTATGGCACTCCAA+AGG - tig0014105:27054-27073 Msa1353980:CDS 40.0%
GGTATACAATCTACTTCCAG+TGG - tig0014105:27419-27438 Msa1353980:CDS 40.0%
!! AGAGGCGATTTCTAGTGTAA+AGG - tig0014105:27525-27544 Msa1353980:intron 40.0%
TAAATGTATGGACACGACTC+CGG + tig0014105:27559-27578 None:intergenic 40.0%
!! TCAGGTTCTCTCTGAAATCA+TGG + tig0014105:27583-27602 None:intergenic 40.0%
AAGACACGTGAGAGATAAGT+AGG + tig0014105:27645-27664 None:intergenic 40.0%
ATGGTCATACATTCAGGCAG+TGG - tig0014105:24607-24626 Msa1353980:three_prime_UTR 45.0%
TGGTCATACATTCAGGCAGT+GGG - tig0014105:24608-24627 Msa1353980:three_prime_UTR 45.0%
ACACGAGCTAACACAGTTGA+AGG - tig0014105:24730-24749 Msa1353980:CDS 45.0%
CTGATAGATCCCAGTCATCA+AGG + tig0014105:25305-25324 None:intergenic 45.0%
TGATGACTGGGATCTATCAG+AGG - tig0014105:25305-25324 Msa1353980:intron 45.0%
GGGATCTATCAGAGGCTAAT+CGG - tig0014105:25313-25332 Msa1353980:intron 45.0%
GTAGGTAGATGTTTCACCAC+AGG + tig0014105:25637-25656 None:intergenic 45.0%
! GCAGTCAGAGAGATCGATTT+AGG - tig0014105:25762-25781 Msa1353980:intron 45.0%
GTTGAGAAAGTGGTTTCCAG+GGG - tig0014105:26048-26067 Msa1353980:intron 45.0%
ACTCTCCGTGTAAGGTAAAG+AGG + tig0014105:26761-26780 None:intergenic 45.0%
TATGGAGCAGAGTAGAGAGT+TGG - tig0014105:26780-26799 Msa1353980:intron 45.0%
ATGGAGCAGAGTAGAGAGTT+GGG - tig0014105:26781-26800 Msa1353980:intron 45.0%
AGTTGGGAGAAAGCCAGATA+AGG - tig0014105:26797-26816 Msa1353980:CDS 45.0%
AAGCCAGATAAGGAGGCAAT+TGG - tig0014105:26807-26826 Msa1353980:CDS 45.0%
GATACAAGGAGTTGGGATTC+AGG - tig0014105:26923-26942 Msa1353980:intron 45.0%
! TACAATCGGGTTGCATGTCT+TGG - tig0014105:27211-27230 Msa1353980:intron 45.0%
AGCTGACATTCTGTAGAGAC+AGG + tig0014105:27243-27262 None:intergenic 45.0%
TCATGGCTCAGATGAAACAC+TGG - tig0014105:27356-27375 Msa1353980:intron 45.0%
AGAACCATTGATCTTCCACG+TGG - tig0014105:27387-27406 Msa1353980:CDS 45.0%
!! TATTAAAATAAAAAATTTGA+TGG + tig0014105:25880-25899 None:intergenic 5.0%
!!! AATTTTTTATTTTAATATGA+CGG - tig0014105:25883-25902 Msa1353980:CDS 5.0%
TGTAGCTTCCCAAGAAGCCA+TGG - tig0014105:24861-24880 Msa1353980:CDS 50.0%
ACAGGCGCACTAATAGTCCA+TGG + tig0014105:24881-24900 None:intergenic 50.0%
AAGTTCTGCCACCTTCTGCT+CGG + tig0014105:25065-25084 None:intergenic 50.0%
GGTGGCAGAACTTTCAGCTA+AGG - tig0014105:25072-25091 Msa1353980:intron 50.0%
ATCAGAGGCTAATCGGAGTG+AGG - tig0014105:25320-25339 Msa1353980:intron 50.0%
! TAATCGGAGTGAGGTGTCTG+AGG - tig0014105:25329-25348 Msa1353980:intron 50.0%
ACGCTTGAGAGAGACAGAAG+AGG - tig0014105:25787-25806 Msa1353980:intron 50.0%
!! GGTTTCCAGGGGTTCTAAGA+AGG - tig0014105:26059-26078 Msa1353980:CDS 50.0%
CAACACCTTCTTAGAACCCC+TGG + tig0014105:26067-26086 None:intergenic 50.0%
TGCTCCATACTCTCCGTGTA+AGG + tig0014105:26769-26788 None:intergenic 50.0%
TGGGAGAAAGCCAGATAAGG+AGG - tig0014105:26800-26819 Msa1353980:CDS 50.0%
GACAGAATCACACTCAGCAG+CGG - tig0014105:26946-26965 Msa1353980:intron 50.0%
AGCAGCGGACGATTTCTTCT+CGG - tig0014105:26961-26980 Msa1353980:intron 50.0%
CAGTCCACGTGGAAGATCAA+TGG + tig0014105:27394-27413 None:intergenic 50.0%
! ATCTTCCACGTGGACTGTAG+TGG - tig0014105:27397-27416 Msa1353980:CDS 50.0%
! TCTTCCACGTGGACTGTAGT+GGG - tig0014105:27398-27417 Msa1353980:CDS 50.0%
TATACCCACTACAGTCCACG+TGG + tig0014105:27405-27424 None:intergenic 50.0%
TGAGGCTGAAGACTGGGAAG+TGG - tig0014105:24643-24662 Msa1353980:three_prime_UTR 55.0%
ACTGGGAAGTGGCCACAAGT+GGG - tig0014105:24654-24673 Msa1353980:three_prime_UTR 55.0%
TGGGGAGGAGATGAGCAAGA+TGG - tig0014105:24673-24692 Msa1353980:three_prime_UTR 55.0%
ACTCGAAACAGCCGAGCAGA+AGG - tig0014105:25051-25070 Msa1353980:intron 55.0%
ACTAGCTGCTCTACTGACGC+AGG - tig0014105:25242-25261 Msa1353980:intron 55.0%
CTAGCTGCTCTACTGACGCA+GGG - tig0014105:25243-25262 Msa1353980:intron 55.0%
GGCTCAGATGAAACACTGGC+TGG - tig0014105:27360-27379 Msa1353980:intron 55.0%
GACTGGGAAGTGGCCACAAG+TGG - tig0014105:24653-24672 Msa1353980:three_prime_UTR 60.0%
CTGGGAAGTGGCCACAAGTG+GGG - tig0014105:24655-24674 Msa1353980:three_prime_UTR 60.0%
GCTCATCTCCTCCCCACTTG+TGG + tig0014105:24669-24688 None:intergenic 60.0%
CGAAACAGCCGAGCAGAAGG+TGG - tig0014105:25054-25073 Msa1353980:intron 60.0%
GGAAGTGGCCACAAGTGGGG+AGG - tig0014105:24658-24677 Msa1353980:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
tig0014105 gene 24451 27682 24451 ID=Msa1353980;Name=Msa1353980
tig0014105 mRNA 24451 27682 24451 ID=Msa1353980-mRNA-1;Parent=Msa1353980;Name=Msa1353980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.77|0.8|0.8|1|1|10|266|331
tig0014105 exon 24451 24777 24451 ID=Msa1353980-mRNA-1:exon:8897;Parent=Msa1353980-mRNA-1
tig0014105 exon 24857 24949 24857 ID=Msa1353980-mRNA-1:exon:8896;Parent=Msa1353980-mRNA-1
tig0014105 exon 25144 25223 25144 ID=Msa1353980-mRNA-1:exon:8895;Parent=Msa1353980-mRNA-1
tig0014105 exon 25850 25951 25850 ID=Msa1353980-mRNA-1:exon:8894;Parent=Msa1353980-mRNA-1
tig0014105 exon 26053 26196 26053 ID=Msa1353980-mRNA-1:exon:8893;Parent=Msa1353980-mRNA-1
tig0014105 exon 26325 26429 26325 ID=Msa1353980-mRNA-1:exon:8892;Parent=Msa1353980-mRNA-1
tig0014105 exon 26783 26869 26783 ID=Msa1353980-mRNA-1:exon:8891;Parent=Msa1353980-mRNA-1
tig0014105 exon 26989 27108 26989 ID=Msa1353980-mRNA-1:exon:8890;Parent=Msa1353980-mRNA-1
tig0014105 exon 27382 27510 27382 ID=Msa1353980-mRNA-1:exon:8889;Parent=Msa1353980-mRNA-1
tig0014105 exon 27608 27682 27608 ID=Msa1353980-mRNA-1:exon:8888;Parent=Msa1353980-mRNA-1
tig0014105 CDS 27608 27682 27608 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 CDS 27382 27510 27382 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 CDS 26989 27108 26989 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 CDS 26783 26869 26783 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 CDS 26325 26429 26325 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 CDS 26053 26196 26053 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 CDS 25850 25951 25850 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 CDS 25144 25223 25144 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 CDS 24857 24949 24857 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 CDS 24717 24777 24717 ID=Msa1353980-mRNA-1:cds;Parent=Msa1353980-mRNA-1
tig0014105 three_prime_UTR 24451 24716 24451 ID=Msa1353980-mRNA-1:three_prime_utr;Parent=Msa1353980-mRNA-1
Gene Sequence

>Msa1353980

ATGAAGAAAGAGCTTCAGGCAAGACCAACTGAAAAAATAGTTGATGATTTGCGCAAGAAAGTAAAAATTTTGCAGGCAGTGGGTTATAATTCAATTGAGGCTGAAGACTGGGAAGTGGCCACAAGTGGGGAGGAGATGAGCAAGATGGAATCTCTACTTCTTGATAAGAACCGAAAAATGGAACACGAGCTAACACAGTTGAAGGTCAAACTTTCTGAAAAAACATCTTCACTCGAAACAGCCGAGCAGAAGGTGGCAGAACTTTCAGCTAAGGTTAATGAACAACAAAAACTGATACAAAAGTTGGAAGATGATATATCCAAGGGATATAATTCCAGTTCCAAAGATCATAAAGGAACTTTCCTTGATGACTGGGATCTATCAGAGGCTAATCGGAGTGAGGTGTCTGAGAATATGGATCAAAGGCATGCCTTAGATCAAGATCAAAGCTCGATGCTTAAAGTAATATGCAGTCAGAGAGATCGATTTAGGACACGCTTGAGAGAGACAGAAGAGGAAATAAGGCAGTTGAAGGAGAAAATTGGGGTATTAACAGCGGAACTAGAAAAGACTAAAGCAGATAATGTTAAACTGTACGGGAAGATTCGTTATGTCCAAGACTATAATGTTGAGAAAGTGGTTTCCAGGGGTTCTAAGAAGTATGCAGAAGATCTTGAAAGTGGTTTCACATCAGATGTTGAATCAAAATACAAGAAGATATACGAGGAAGATATAAATCCTTTTGCTGCATTCTCAAAAAAGGAAAGAGATCAAAGATACAAGGAGTTGGGATTCAGGGACAGAATCACACTCAGCAGCGGACGATTTCTTCTCGGTAACAAGTATGCCCGAACTTTTGCATTCTTTTATACAATCGGGTTGCATGTCTTGGTCTTTACCTGTCTCTACAGAATGTCAGCTTTGAGTTATCTAAGTCATGGCTCAGATGAAACACTGGCTGGAGAGAGAACCATTGATCTTCCACGTGGACTGTAG

Protein sequence

>Msa1353980

MKKELQARPTEKIVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSSLETAEQKVAELSAKVNEQQKLIQKLEDDISKGYNSSSKDHKGTFLDDWDLSEANRSEVSENMDQRHALDQDQSSMLKVICSQRDRFRTRLRETEEEIRQLKEKIGVLTAELEKTKADNVKLYGKIRYVQDYNVEKVVSRGSKKYAEDLESGFTSDVESKYKKIYEEDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCLYRMSALSYLSHGSDETLAGERTIDLPRGL*