AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116700 MtrunA17_Chr1g0181751 91.230 935 51 2 1 931 1 908 0.0 1710
Msa0116700 MtrunA17_Chr4g0030181 61.342 313 103 7 1 300 1 308 3.70e-118 385
Msa0116700 MtrunA17_Chr4g0030181 37.127 369 197 16 588 931 674 1032 2.88e-45 177
Msa0116700 MtrunA17_Chr2g0325921 66.192 281 84 3 1 273 1 278 2.50e-114 374
Msa0116700 MtrunA17_Chr2g0325921 34.444 360 209 13 592 931 643 995 1.34e-36 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116700 AT5G60170.2 34.604 1023 524 36 1 928 1 973 7.90e-139 439
Msa0116700 AT5G60170.1 34.574 1021 525 36 1 928 1 971 1.09e-138 439
Msa0116700 AT3G45630.2 62.136 309 105 4 1 300 1 306 1.48e-118 386
Msa0116700 AT3G45630.2 30.749 387 221 16 572 928 606 975 1.41e-30 130
Msa0116700 AT3G45630.1 62.136 309 105 4 1 300 1 306 1.48e-118 386
Msa0116700 AT3G45630.1 30.749 387 221 16 572 928 606 975 1.41e-30 130
Msa0116700 AT2G28540.1 55.556 324 128 6 1 313 1 319 1.17e-112 367
Msa0116700 AT2G28540.2 44.894 470 204 11 1 453 1 432 5.82e-112 367
Msa0116700 AT5G62910.1 43.333 60 28 1 8 67 251 304 1.23e-11 67.4
Msa0116700 AT5G62910.2 43.333 60 28 1 8 67 251 304 1.23e-11 67.4
Msa0116700 AT3G48070.1 44.828 58 26 1 8 65 243 294 2.25e-11 66.6
Msa0116700 AT3G48070.2 44.828 58 26 1 8 65 243 294 4.16e-11 66.2
Msa0116700 AT1G74870.1 49.180 61 24 2 2 62 206 259 5.00e-11 65.1
Msa0116700 AT3G48070.3 44.828 58 26 1 8 65 194 245 5.36e-11 65.5

Find 263 sgRNAs with CRISPR-Local

Find 565 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATTGTGACAGAATTTC+AGG 0.180494 1_3:+35806563 None:intergenic
CTCTTGTAAATCTACGATTT+TGG 0.193487 1_3:+35811712 None:intergenic
TATATATATTAAACTCTATT+TGG 0.214080 1_3:+35805902 None:intergenic
CGCAACCTCGTGTACATAAT+TGG 0.216432 1_3:-35812575 Msa0116700:CDS
GTTACTGTGACGAAACTTTC+TGG 0.228390 1_3:-35809902 Msa0116700:CDS
ACTTACATCTAAAGAACTTT+TGG 0.233420 1_3:+35810665 None:intergenic
TTCATTTGCAGGGCTTGTTT+TGG 0.243269 1_3:-35811925 Msa0116700:intron
AACTCGACCGATTCCTCTTT+AGG 0.255910 1_3:-35809635 Msa0116700:CDS
AATTCTGAACAAACAATTTC+AGG 0.260991 1_3:+35806038 None:intergenic
CAGCAATCATTTGGGGTTGC+TGG 0.261328 1_3:-35809074 Msa0116700:CDS
TTTCAGATCATATTGGAAAT+AGG 0.261331 1_3:-35807044 Msa0116700:CDS
CACTGCCAAGCACTGGAATC+TGG 0.262289 1_3:-35806491 Msa0116700:three_prime_UTR
GAAGTATTGAATAATGAAAT+AGG 0.264396 1_3:-35806844 Msa0116700:CDS
CTGATTTGCAGCAATCATTT+GGG 0.265234 1_3:-35809082 Msa0116700:CDS
AGACAGGCCACTGAAATAAT+TGG 0.270957 1_3:+35806873 None:intergenic
AATAATTTGAATCGTCCTTC+AGG 0.272128 1_3:-35810750 Msa0116700:CDS
TTTCCCTTCAATGCACTAAT+AGG 0.272870 1_3:-35806714 Msa0116700:three_prime_UTR
GCCGACCTTGGCGGTTATTA+TGG 0.274091 1_3:-35806394 Msa0116700:intron
GAAACTACAATCGAAGTTAT+AGG 0.282433 1_3:-35806129 Msa0116700:three_prime_UTR
TAAATTATCGCTGCCTTTGC+CGG 0.284152 1_3:+35809499 None:intergenic
ATTAGTTGTTCAGTCAATTC+AGG 0.284421 1_3:+35806773 None:intergenic
GCTTCAGATGATGGCTTGAT+TGG 0.295084 1_3:+35809435 None:intergenic
ATTCGTAACCAGAATCATTC+AGG 0.298934 1_3:-35809401 Msa0116700:CDS
ATTCAACCACACCAGCCTTT+TGG 0.298993 1_3:-35809574 Msa0116700:CDS
TATTATTCCGGAAATAATTC+TGG 0.308692 1_3:-35811753 Msa0116700:CDS
AAGCAGCCCCTGGCAGGGTT+TGG 0.311969 1_3:+35810080 None:intergenic
AAGGCTTCCCTGAATGATTC+TGG 0.318324 1_3:+35809393 None:intergenic
CGGTGCAAGCAGCCCCTGGC+AGG 0.321354 1_3:+35810074 None:intergenic
CAGTTCAGTAGTAATATTCT+TGG 0.321542 1_3:-35806928 Msa0116700:CDS
CCAGATGCATAATTCCCTTT+AGG 0.322792 1_3:+35809044 None:intergenic
ACTGGTACCAGAATTATTTC+CGG 0.324456 1_3:+35811746 None:intergenic
TCAAGACTTTCAGATCATAT+TGG 0.327796 1_3:-35807051 Msa0116700:CDS
TTCTGTGAGTACAAGCTTCC+TGG 0.329107 1_3:-35809810 Msa0116700:CDS
TCTGATTTGCAGCAATCATT+TGG 0.331891 1_3:-35809083 Msa0116700:CDS
AGACTTGTTTCAAATCTGTT+TGG 0.334593 1_3:-35806597 Msa0116700:three_prime_UTR
ACTCGACCGATTCCTCTTTA+GGG 0.334806 1_3:-35809634 Msa0116700:CDS
AGCAGCCCCTGGCAGGGTTT+GGG 0.337581 1_3:+35810081 None:intergenic
TTGTAGCACCAATGATTTGT+AGG 0.340037 1_3:+35810772 None:intergenic
GGCAGCTCCATTGCTTGAAC+CGG 0.342584 1_3:+35810486 None:intergenic
TTCATCACGTGCTGGTAATC+TGG 0.349908 1_3:-35810134 Msa0116700:CDS
ATCGAAGTTATAGGCCTTAC+TGG 0.351396 1_3:-35806120 Msa0116700:three_prime_UTR
ACCTGGACTGATTATTGTCT+TGG 0.354617 1_3:+35809144 None:intergenic
ATTTGATGGAAGTCTGTCTT+TGG 0.355483 1_3:-35808940 Msa0116700:CDS
GAATAACGGAATACCGAGTT+TGG 0.358182 1_3:+35806010 None:intergenic
AAGTATTGAATAATGAAATA+GGG 0.358868 1_3:-35806843 Msa0116700:CDS
AAGGTTTGCCCCAGGTTAAA+AGG 0.359911 1_3:+35807153 None:intergenic
CATGCTATGAATGGTGAAAT+AGG 0.361239 1_3:-35806088 Msa0116700:three_prime_UTR
GTGCTATCGGATAAATTTGA+TGG 0.365279 1_3:-35808954 Msa0116700:CDS
AAACTCACTGGAAAATTTAG+AGG 0.365826 1_3:+35808914 None:intergenic
GTTCTATAAGCATCACTTTG+AGG 0.368135 1_3:+35807015 None:intergenic
TGTATGTACAAAGTTAGTTT+TGG 0.371410 1_3:-35805949 Msa0116700:three_prime_UTR
ACTAGGGCAAGGTGTGTATC+TGG 0.372035 1_3:-35810184 Msa0116700:intron
GAATGCAGTTGTTCAGAAAA+TGG 0.376217 1_3:+35806955 None:intergenic
TTCATATTTCACTCGGGATT+CGG 0.378364 1_3:-35809678 Msa0116700:CDS
ACACAATTTCAGCCACATAA+AGG 0.380111 1_3:+35806640 None:intergenic
GAACAGAGTTGTAATAGTTC+TGG 0.383667 1_3:-35807426 Msa0116700:intron
TATAATGGAAATGGCTCATA+AGG 0.385777 1_3:-35812862 Msa0116700:CDS
TTCCTTCCATCTGATGATTT+AGG 0.390471 1_3:+35812626 None:intergenic
TTGAACCGGATTCTTTAATC+TGG 0.391628 1_3:+35810500 None:intergenic
GTGGCTGATGATACATGTTT+AGG 0.393495 1_3:+35810699 None:intergenic
AAAGAGGAATCGGTCGAGTT+AGG 0.394430 1_3:+35809638 None:intergenic
GCTGAAATTGTGTGGCAGTC+TGG 0.395484 1_3:-35806630 Msa0116700:three_prime_UTR
TCAGCAGCTTCCGTGGGCCT+TGG 0.396088 1_3:-35809851 Msa0116700:CDS
TCCTCCACTATTCCCCTACT+AGG 0.401309 1_3:+35807192 None:intergenic
GACTGAACAACTAATATTCA+TGG 0.407825 1_3:-35806765 Msa0116700:three_prime_UTR
GCGACTGAATTGAGGAAGTA+AGG 0.414883 1_3:+35807134 None:intergenic
CTAACAAGGCAGTTTCAAAT+CGG 0.419000 1_3:-35809760 Msa0116700:CDS
GATTGCCGTTGACCATTTGA+TGG 0.426623 1_3:+35806540 None:intergenic
CTATGGTATTTGACCCTAGT+AGG 0.428418 1_3:-35807206 Msa0116700:CDS
TGTATCAAGAATAGACCTTT+CGG 0.429650 1_3:+35810054 None:intergenic
GAAGATGAACTAGTATCCTT+TGG 0.429995 1_3:+35810154 None:intergenic
GCGCAAAGCAGGTGCTTTGA+AGG 0.432491 1_3:+35809172 None:intergenic
GTATATCTATAGTATTATTC+CGG 0.435290 1_3:-35811765 Msa0116700:CDS
TGCAGGAAGTGCTGTTGAAT+TGG 0.437192 1_3:+35810465 None:intergenic
TCCATCTCTTCGGTACATAT+CGG 0.437890 1_3:+35813338 None:intergenic
TTACGGTTGTCAGACATAAC+TGG 0.438984 1_3:-35806458 Msa0116700:three_prime_UTR
ACAATGCGTTCTTTGTCATA+AGG 0.439574 1_3:+35812804 None:intergenic
CACAATTATATCTTCCCAAA+AGG 0.441190 1_3:+35809559 None:intergenic
TTGGCATCATATAATGGAAA+TGG 0.443228 1_3:-35812871 Msa0116700:CDS
CACAGATCTGTGTATGGTGT+TGG 0.443926 1_3:-35812890 Msa0116700:intron
AGATTCAATAGTTAAGTTGT+TGG 0.444149 1_3:-35809219 Msa0116700:CDS
CAAATAACCAGTGGGGAAGT+TGG 0.446372 1_3:-35806903 Msa0116700:CDS
ATTGATTCCCAAACCCTGCC+AGG 0.447448 1_3:-35810088 Msa0116700:CDS
ATCAGTCAGGTCCATCTCTT+CGG 0.447989 1_3:+35813328 None:intergenic
ACCAGTACCCTCACTCTTCA+CGG 0.451024 1_3:+35809328 None:intergenic
TCGATATCTCGTACAGCAAC+GGG 0.451883 1_3:-35812316 Msa0116700:CDS
CACTTCCTGCAGCCAACTCT+TGG 0.453295 1_3:-35810453 Msa0116700:intron
AGAGCCTATTAGTGCATTGA+AGG 0.454023 1_3:+35806710 None:intergenic
AAATTATCGCTGCCTTTGCC+GGG 0.458700 1_3:+35809500 None:intergenic
CACAATTTCAGCCACATAAA+GGG 0.460767 1_3:+35806641 None:intergenic
TTGCTTGATGGGAAAGTGTA+TGG 0.460876 1_3:+35808981 None:intergenic
GATACATGTTTAGGATCATC+TGG 0.463183 1_3:+35810708 None:intergenic
TATGCATCTGGTGGTTGTAA+TGG 0.463874 1_3:-35809032 Msa0116700:CDS
CATGTGGTGCGGTGATCTCC+AGG 0.463912 1_3:+35809792 None:intergenic
CGTGGGCCTTGGTCAAGAAA+AGG 0.470197 1_3:-35809840 Msa0116700:CDS
AAGAACCAGATTAAAGAATC+CGG 0.476974 1_3:-35810505 Msa0116700:CDS
CTTTCGGTGCAAGCAGCCCC+TGG 0.477164 1_3:+35810070 None:intergenic
CCTAAAGGGAATTATGCATC+TGG 0.477224 1_3:-35809044 Msa0116700:CDS
TCAGAATTTGTTTCCAAACT+CGG 0.482425 1_3:-35806023 Msa0116700:three_prime_UTR
ACTGCCAAGCACTGGAATCT+GGG 0.485252 1_3:-35806490 Msa0116700:three_prime_UTR
GGATGTGCATGGCTCATGTT+CGG 0.485368 1_3:-35809738 Msa0116700:CDS
GTCACAATTATGCCATCAAA+TGG 0.485642 1_3:-35806552 Msa0116700:three_prime_UTR
ATGCAAATGCTTCCCTAAAG+AGG 0.485653 1_3:+35809622 None:intergenic
CTCCATCTGTAAATATCAGC+AGG 0.487534 1_3:-35807254 Msa0116700:CDS
ATAATTTGAATCGTCCTTCA+GGG 0.488053 1_3:-35810749 Msa0116700:CDS
GTCTTTGGAACTAGATGCAT+GGG 0.488988 1_3:-35809243 Msa0116700:CDS
GCTTCAGATGCTGATCAGTC+AGG 0.491128 1_3:+35813315 None:intergenic
AGGGAGTACTTTGGAAGGTA+TGG 0.494301 1_3:-35812355 Msa0116700:CDS
ATGCTTCCCTAAAGAGGAAT+CGG 0.494776 1_3:+35809628 None:intergenic
GATAGCACAGAATTGCTTGA+TGG 0.494873 1_3:+35808969 None:intergenic
CAAAGAACGCATTGTGGCAA+TGG 0.497709 1_3:-35812796 Msa0116700:CDS
TGACCCTAGTAGGGGAATAG+TGG 0.500098 1_3:-35807196 Msa0116700:CDS
CGGAGAAGAGAGAGTGGTGG+TGG 0.501583 1_3:+35814211 None:intergenic
TCAATACTTCAGACATAGAC+AGG 0.502092 1_3:+35806857 None:intergenic
TGAAGGTACAGATACACTAT+TGG 0.504841 1_3:+35809988 None:intergenic
TCTTCATTGCGACTGAATTG+AGG 0.507830 1_3:+35807126 None:intergenic
TTGTCTGGCAAAGGAAAACC+TGG 0.512658 1_3:+35809127 None:intergenic
ATCAAGCAATTCTGTGCTAT+CGG 0.515337 1_3:-35808967 Msa0116700:CDS
TCTGTAAATATCAGCAGGAT+AGG 0.517263 1_3:-35807249 Msa0116700:CDS
ATGCTTATAGAACTAATTCG+AGG 0.518286 1_3:-35807005 Msa0116700:CDS
TTGCTGGACATGATCCTAAA+GGG 0.518964 1_3:-35809058 Msa0116700:CDS
TGTTAAAAGATCCCTTTATG+TGG 0.522640 1_3:-35806652 Msa0116700:three_prime_UTR
ATAAATCCATTACCAAGAGT+TGG 0.523397 1_3:+35810441 None:intergenic
TAACAAGGCAGTTTCAAATC+GGG 0.527922 1_3:-35809759 Msa0116700:CDS
GCTCATGCTTCAAGTCCACC+TGG 0.528672 1_3:-35807498 Msa0116700:CDS
CATCTGAAGCCGTGCAAATG+TGG 0.529368 1_3:-35813302 Msa0116700:CDS
AATGATTCCAATTATTTCAG+TGG 0.530132 1_3:-35806880 Msa0116700:CDS
TCCGATATGTACCGAAGAGA+TGG 0.530600 1_3:-35813339 Msa0116700:CDS
CCTCCACTATTCCCCTACTA+GGG 0.530781 1_3:+35807193 None:intergenic
AGTAGGGTCCTACAAATCAT+TGG 0.533965 1_3:-35810780 Msa0116700:CDS
TTAGCTTCACTGCCAAGCAC+TGG 0.533987 1_3:-35806498 Msa0116700:three_prime_UTR
AACTTATTCAGCAGCTTCCG+TGG 0.534099 1_3:-35809858 Msa0116700:CDS
ATTATATCTTCCCAAAAGGC+TGG 0.535132 1_3:+35809563 None:intergenic
ATCTTCCCAAAAGGCTGGTG+TGG 0.535708 1_3:+35809568 None:intergenic
GCATGAATTTCCCACCAGTA+AGG 0.536061 1_3:+35806106 None:intergenic
AAAGAATCCGGTTCAAGCAA+TGG 0.536155 1_3:-35810493 Msa0116700:CDS
AATCATTCCAACTTCCCCAC+TGG 0.536419 1_3:+35806896 None:intergenic
ATCAAGCCATCATCTGAAGC+AGG 0.536789 1_3:-35809432 Msa0116700:CDS
AATCTGGGTCCTATGCATTA+CGG 0.537519 1_3:-35806475 Msa0116700:three_prime_UTR
AGTATTGAATAATGAAATAG+GGG 0.537525 1_3:-35806842 Msa0116700:CDS
GTTGCTGGACATGATCCTAA+AGG 0.542234 1_3:-35809059 Msa0116700:CDS
ACCTCATAGCCACATTTGCA+CGG 0.542997 1_3:+35813293 None:intergenic
ATGGTGTTGGCATCATATAA+TGG 0.543359 1_3:-35812877 Msa0116700:CDS
TATGGTATTTGACCCTAGTA+GGG 0.545322 1_3:-35807205 Msa0116700:CDS
GTCAGGAGAGCCGACCTTGG+CGG 0.545951 1_3:-35806403 Msa0116700:three_prime_UTR
TTCGTAACCAGAATCATTCA+GGG 0.546044 1_3:-35809400 Msa0116700:CDS
TGTCTTTGGAACTAGATGCA+TGG 0.546869 1_3:-35809244 Msa0116700:CDS
TTGATTCCCAAACCCTGCCA+GGG 0.546915 1_3:-35810087 Msa0116700:CDS
CAGGGGCTGCTTGCACCGAA+AGG 0.546984 1_3:-35810069 Msa0116700:CDS
GGTGCAAGCAGCCCCTGGCA+GGG 0.547321 1_3:+35810075 None:intergenic
GTCGATATCTCGTACAGCAA+CGG 0.548555 1_3:-35812317 Msa0116700:CDS
TGTTGAGTTCAAGAATCCTA+TGG 0.549167 1_3:-35807223 Msa0116700:CDS
TTGAAGATTCATATTTCACT+CGG 0.550404 1_3:-35809685 Msa0116700:CDS
AGGTACAGATACACTATTGG+TGG 0.551077 1_3:+35809991 None:intergenic
CATTACCAAGAGTTGGCTGC+AGG 0.551503 1_3:+35810448 None:intergenic
GCAGCGATAATTTAGCCTCC+AGG 0.551527 1_3:-35809490 Msa0116700:CDS
CCATGCATGACAATACTTTG+TGG 0.552172 1_3:+35811900 None:intergenic
ATACACTAATTAGTGAATAA+CGG 0.552368 1_3:+35805996 None:intergenic
TGATTTGCAGCAATCATTTG+GGG 0.553932 1_3:-35809081 Msa0116700:CDS
AGGACCCAGATTCCAGTGCT+TGG 0.554245 1_3:+35806486 None:intergenic
CTTCAACGTAGGGAGTACTT+TGG 0.557460 1_3:-35812364 Msa0116700:CDS
GAAATAATTCTGGTACCAGT+AGG 0.557629 1_3:-35811743 Msa0116700:CDS
TCCAAGACAATAATCAGTCC+AGG 0.558162 1_3:-35809145 Msa0116700:CDS
GTACTTTGGAAGGTATGGAA+AGG 0.558874 1_3:-35812350 Msa0116700:CDS
GCAGGCAGGACAACGGCCCT+CGG 0.559341 1_3:+35812833 None:intergenic
TAAGCAAACAAGAGTGGGTG+AGG 0.562447 1_3:+35806518 None:intergenic
TCATAAGGTGAACGGCAGGC+AGG 0.563242 1_3:+35812819 None:intergenic
GTGAGTGAATGAGAGAGAGA+AGG 0.563915 1_3:+35814263 None:intergenic
AGCCTAAATCATCAGATGGA+AGG 0.565652 1_3:-35812628 Msa0116700:CDS
TCTTGGTTCAAATAACCAGT+GGG 0.566345 1_3:-35806911 Msa0116700:CDS
ATAATTGTGACAGAATTTCA+GGG 0.567695 1_3:+35806564 None:intergenic
TGGTTCAGATGTTGATAACA+AGG 0.567738 1_3:-35809309 Msa0116700:CDS
GAGAAGACCGTGAAGAGTGA+GGG 0.567760 1_3:-35809335 Msa0116700:CDS
ACCATAATAACCGCCAAGGT+CGG 0.571077 1_3:+35806393 None:intergenic
GTTTCAAATCGGGATGTGCA+TGG 0.571822 1_3:-35809749 Msa0116700:CDS
TGAGTCAATTGTTATCAATG+AGG 0.573873 1_3:-35809924 Msa0116700:CDS
TTTGTCATAAGGTGAACGGC+AGG 0.574302 1_3:+35812815 None:intergenic
TCTTCATCTGCAAGGTGAAG+AGG 0.574669 1_3:+35812548 None:intergenic
AAGTTATAGGCCTTACTGGT+GGG 0.576685 1_3:-35806116 Msa0116700:three_prime_UTR
AGTTCATCTTCATCACGTGC+TGG 0.577681 1_3:-35810142 Msa0116700:CDS
TTAAAGCCTAAATCATCAGA+TGG 0.577945 1_3:-35812632 Msa0116700:CDS
TTGAACAAACATCACATTGG+TGG 0.578775 1_3:-35809962 Msa0116700:CDS
AACTTGATATTCTCATAACT+AGG 0.580208 1_3:+35806802 None:intergenic
CTACTAGGGTCAAATACCAT+AGG 0.581897 1_3:+35807207 None:intergenic
TGAAGATTCATATTTCACTC+GGG 0.583365 1_3:-35809684 Msa0116700:CDS
TTAGGATCATCTGGTGGTGG+AGG 0.584690 1_3:+35810717 None:intergenic
GTAGGGGAATAGTGGAGGAA+AGG 0.584951 1_3:-35807188 Msa0116700:CDS
ATAGCACAGAATTGCTTGAT+GGG 0.586568 1_3:+35808970 None:intergenic
CAGATTTGAAACAAGTCTCA+AGG 0.587356 1_3:+35806602 None:intergenic
AACTCACATCTTCATCTGCA+AGG 0.587859 1_3:+35812540 None:intergenic
AGAGAAGACCGTGAAGAGTG+AGG 0.588042 1_3:-35809336 Msa0116700:CDS
GGCTCTCAGATGGCAGTGTG+TGG 0.592367 1_3:-35806693 Msa0116700:three_prime_UTR
TGTTTAGGATCATCTGGTGG+TGG 0.593160 1_3:+35810714 None:intergenic
ACAATGAGGTGAATAATGCC+TGG 0.593440 1_3:+35809472 None:intergenic
GAGGAAGTAAGGTTTGCCCC+AGG 0.593890 1_3:+35807145 None:intergenic
GAAGCTAAGCAAACAAGAGT+GGG 0.594190 1_3:+35806513 None:intergenic
TACTAGAAGGTAGATCATTG+AGG 0.594731 1_3:-35812019 Msa0116700:intron
CCACAAAGTATTGTCATGCA+TGG 0.596103 1_3:-35811900 Msa0116700:CDS
CCACCAGCTACTTCAACGTA+GGG 0.597126 1_3:-35812374 Msa0116700:intron
TGCTTGATGGGAAAGTGTAT+GGG 0.597143 1_3:+35808982 None:intergenic
AAATGATTGCTGCAAATCAG+AGG 0.597628 1_3:+35809085 None:intergenic
AGGAAGCTTGTACTCACAGA+AGG 0.598102 1_3:+35809812 None:intergenic
GGTTCAGTAAAATATTCAGA+AGG 0.600729 1_3:+35809374 None:intergenic
CTGCTGATATTTACAGATGG+AGG 0.601283 1_3:+35807255 None:intergenic
GGTGCTTTGAAGGATGTGTA+TGG 0.601951 1_3:+35809182 None:intergenic
ACTTATTCAGCAGCTTCCGT+GGG 0.602554 1_3:-35809857 Msa0116700:CDS
GAAGTTATAGGCCTTACTGG+TGG 0.604366 1_3:-35806117 Msa0116700:three_prime_UTR
TGAGAGCGGAGAAGAGAGAG+TGG 0.604806 1_3:+35814205 None:intergenic
AATGTCAGGAGAGCCGACCT+TGG 0.605273 1_3:-35806406 Msa0116700:three_prime_UTR
TGAAGCTAAGCAAACAAGAG+TGG 0.610309 1_3:+35806512 None:intergenic
TGTATCTGGCAGTCTTCCAA+AGG 0.610994 1_3:-35810170 Msa0116700:CDS
ACCGTGAAGAGTGAGGGTAC+TGG 0.611276 1_3:-35809329 Msa0116700:CDS
ATCCTGCTGATATTTACAGA+TGG 0.611333 1_3:+35807252 None:intergenic
TGATGTTTGTTCAACTCTGA+AGG 0.613376 1_3:+35809971 None:intergenic
CTTAGATTCTGAGCACAATG+AGG 0.615109 1_3:+35809458 None:intergenic
TCCACCAGCTACTTCAACGT+AGG 0.615567 1_3:-35812375 Msa0116700:intron
CTCATGCTTCAAGTCCACCT+GGG 0.617092 1_3:-35807497 Msa0116700:CDS
CCCTAGTAGGGGAATAGTGG+AGG 0.622353 1_3:-35807193 Msa0116700:CDS
GTTCTTTGTCATAAGGTGAA+CGG 0.623891 1_3:+35812811 None:intergenic
TGGGAAATTCATGCTATGAA+TGG 0.624607 1_3:-35806097 Msa0116700:three_prime_UTR
AACGTAGGGAGTACTTTGGA+AGG 0.624800 1_3:-35812360 Msa0116700:CDS
GGCTCATAAGGATGAAACCG+AGG 0.625328 1_3:-35812850 Msa0116700:CDS
AACTCACTGGAAAATTTAGA+GGG 0.627206 1_3:+35808915 None:intergenic
CAATGGCAGCTAACTGTCGA+AGG 0.628948 1_3:-35812779 Msa0116700:intron
AACAAGGTTTCTTCAGACGT+CGG 0.630644 1_3:-35809293 Msa0116700:CDS
TTCTTGGTTCAAATAACCAG+TGG 0.634073 1_3:-35806912 Msa0116700:CDS
GGAGGTAAAACACTCCCTGA+AGG 0.636149 1_3:+35810735 None:intergenic
CTGTCTGACATTGCAAACCC+AGG 0.638003 1_3:+35807480 None:intergenic
GTCTGACAACCGTAATGCAT+AGG 0.638270 1_3:+35806466 None:intergenic
AGAAAAGCTTACACTGAGAG+CGG 0.639961 1_3:+35814191 None:intergenic
TGCACTAATAGGCTCTCAGA+TGG 0.639965 1_3:-35806703 Msa0116700:three_prime_UTR
GAGCCTATTAGTGCATTGAA+GGG 0.641833 1_3:+35806711 None:intergenic
GATCAACAACAACCCGGCAA+AGG 0.642337 1_3:-35809512 Msa0116700:CDS
GACTGTGATCAACAACAACC+CGG 0.643140 1_3:-35809518 Msa0116700:CDS
GAGCGGAGAAGAGAGAGTGG+TGG 0.646204 1_3:+35814208 None:intergenic
TTATGCCATCAAATGGTCAA+CGG 0.646638 1_3:-35806545 Msa0116700:three_prime_UTR
TTTATGTGGCTGAAATTGTG+TGG 0.649931 1_3:-35806638 Msa0116700:three_prime_UTR
TTGTTAGTATTCAAATCATG+TGG 0.654500 1_3:+35809776 None:intergenic
TGATTCCCAAACCCTGCCAG+GGG 0.654633 1_3:-35810086 Msa0116700:CDS
ACTCTCCCGCGAGAAAACCC+AGG 0.659154 1_3:+35807450 None:intergenic
AAAGGGAATTATGCATCTGG+TGG 0.660201 1_3:-35809041 Msa0116700:CDS
GTGAACGGCAGGCAGGACAA+CGG 0.664000 1_3:+35812826 None:intergenic
GCTCATAAGGATGAAACCGA+GGG 0.665241 1_3:-35812849 Msa0116700:CDS
TCTGACATTGCAAACCCAGG+TGG 0.667610 1_3:+35807483 None:intergenic
ATGGTATTTGACCCTAGTAG+GGG 0.670671 1_3:-35807204 Msa0116700:CDS
GCCGTGCAAATGTGGCTATG+AGG 0.674534 1_3:-35813294 Msa0116700:intron
ACTCACCATAATAACCGCCA+AGG 0.679005 1_3:+35806389 None:intergenic
ATGTCAGACAGAATACCACC+TGG 0.679445 1_3:-35807468 Msa0116700:CDS
ACATGATTTGAATACTAACA+AGG 0.682637 1_3:-35809774 Msa0116700:CDS
TCATGCATGGCTCAGAAATG+TGG 0.685600 1_3:-35811887 Msa0116700:intron
TGAACAACTAATATTCATGG+TGG 0.689343 1_3:-35806762 Msa0116700:three_prime_UTR
GAGTTGAACAAACATCACAT+TGG 0.697798 1_3:-35809965 Msa0116700:CDS
CTTGGTTCAAATAACCAGTG+GGG 0.702385 1_3:-35806910 Msa0116700:CDS
TATTGTGTAGCTGAATACCG+TGG 0.706869 1_3:-35813394 Msa0116700:intron
ACAGATGGAGGAGCATACTG+TGG 0.707322 1_3:+35807267 None:intergenic
TTATGACAAAGAACGCATTG+TGG 0.713769 1_3:-35812802 Msa0116700:CDS
GCAGTCCAATTATGTACACG+AGG 0.715517 1_3:+35812570 None:intergenic
TGTCAGACAGAATACCACCT+GGG 0.740545 1_3:-35807467 Msa0116700:CDS
AGTATTCAAATCATGTGGTG+CGG 0.743229 1_3:+35809781 None:intergenic
CTCCCGCGAGAAAACCCAGG+TGG 0.744790 1_3:+35807453 None:intergenic
GTATTGAATAATGAAATAGG+GGG 0.745932 1_3:-35806841 Msa0116700:CDS
ATGAGGTGAATAATGCCTGG+AGG 0.749776 1_3:+35809475 None:intergenic
ACATGTTTAGGATCATCTGG+TGG 0.761344 1_3:+35810711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAAAAAATGAGTTA+GGG + chr1_3:35808588-35808607 None:intergenic 10.0%
!! TTAAATAAAAAAAATGAGTT+AGG + chr1_3:35808589-35808608 None:intergenic 10.0%
!!! TTTTTTTTATTTAACTATAG+AGG - chr1_3:35808595-35808614 Msa0116700:intron 10.0%
!! ACTATAATATAAAAAACATT+TGG - chr1_3:35812045-35812064 Msa0116700:CDS 10.0%
!! TATATATATTAAACTCTATT+TGG + chr1_3:35814274-35814293 None:intergenic 10.0%
!!! ATATCAAGTAATCAATTTTT+AGG - chr1_3:35807447-35807466 Msa0116700:CDS 15.0%
!!! GATTTAATTTTCTTATCTTT+AGG - chr1_3:35808070-35808089 Msa0116700:intron 15.0%
!!! TTCTACTATTTTGTTTTTTT+AGG - chr1_3:35809591-35809610 Msa0116700:CDS 15.0%
!! AAAAAAATAAAAAAACTCAC+TGG + chr1_3:35811274-35811293 None:intergenic 15.0%
!!! TTCTGTTTTATTTTATTATG+TGG - chr1_3:35811798-35811817 Msa0116700:intron 15.0%
!! AAATTTATCAATTGATCATT+TGG - chr1_3:35812070-35812089 Msa0116700:CDS 15.0%
!!! TTTTTTTACTTTTCTACTAT+AGG - chr1_3:35812101-35812120 Msa0116700:intron 15.0%
!!! AAGTATTGAATAATGAAATA+GGG - chr1_3:35813330-35813349 Msa0116700:CDS 15.0%
!!! TTTCATTTCACTTTTTCTTA+GGG - chr1_3:35806052-35806071 Msa0116700:three_prime_UTR 20.0%
!!! TGAAATTTGTTGCAATTATT+AGG - chr1_3:35806354-35806373 Msa0116700:intron 20.0%
!!! TTGTTATTCTTCTTGTTTTT+AGG - chr1_3:35806648-35806667 Msa0116700:three_prime_UTR 20.0%
!!! TGTTATTCTTCTTGTTTTTA+GGG - chr1_3:35806649-35806668 Msa0116700:three_prime_UTR 20.0%
!! TTAAGATGAAAAAACCTATT+TGG - chr1_3:35807150-35807169 Msa0116700:CDS 20.0%
!! TTAAACTACACAAACTAATA+TGG + chr1_3:35807723-35807742 None:intergenic 20.0%
!! AAAACATGTTATCAATTGAA+GGG + chr1_3:35807772-35807791 None:intergenic 20.0%
!! AAAAACATGTTATCAATTGA+AGG + chr1_3:35807773-35807792 None:intergenic 20.0%
!!! TCAATTGATAACATGTTTTT+TGG - chr1_3:35807773-35807792 Msa0116700:intron 20.0%
!! GAAAATAATGACATAAACAA+GGG + chr1_3:35807986-35808005 None:intergenic 20.0%
!! AGAAAATAATGACATAAACA+AGG + chr1_3:35807987-35808006 None:intergenic 20.0%
!! GTATATCTATAGTATTATTC+CGG - chr1_3:35808408-35808427 Msa0116700:intron 20.0%
!! GATAATTTATATAGTATGTG+AGG + chr1_3:35808799-35808818 None:intergenic 20.0%
!! TACTATATAAATTATCTTGC+TGG - chr1_3:35808803-35808822 Msa0116700:intron 20.0%
!! ATTCAAAAGTTCAATCAAAA+TGG + chr1_3:35808961-35808980 None:intergenic 20.0%
!!! TTTGGTAGTTCAAATTTTAA+TGG - chr1_3:35809039-35809058 Msa0116700:CDS 20.0%
!!! GTAATGGATTTATGAATATT+TGG - chr1_3:35809742-35809761 Msa0116700:CDS 20.0%
!! ATTCTTGATACAAAAAAATC+AGG - chr1_3:35810130-35810149 Msa0116700:CDS 20.0%
!! TTCTTGATACAAAAAAATCA+GGG - chr1_3:35810131-35810150 Msa0116700:CDS 20.0%
!!! TATATCTAACATTTTGTCTT+TGG - chr1_3:35810915-35810934 Msa0116700:intron 20.0%
!!! TTTGTTTTTTGTTTTTTGAG+AGG - chr1_3:35811624-35811643 Msa0116700:intron 20.0%
!! TTAACAAAATTTGATGTTCA+TGG - chr1_3:35811718-35811737 Msa0116700:CDS 20.0%
!! TAACAAAATTTGATGTTCAT+GGG - chr1_3:35811719-35811738 Msa0116700:CDS 20.0%
!!! TATAGTTGCACTTTTTTAAT+AGG + chr1_3:35812031-35812050 None:intergenic 20.0%
!! ATAATGCATCTTTAATAAAG+CGG - chr1_3:35812441-35812460 Msa0116700:intron 20.0%
!!! GAAGTATTGAATAATGAAAT+AGG - chr1_3:35813329-35813348 Msa0116700:CDS 20.0%
!!! AGTATTGAATAATGAAATAG+GGG - chr1_3:35813331-35813350 Msa0116700:CDS 20.0%
!!! TATTATGGTGAGTTTTAAAT+TGG - chr1_3:35813794-35813813 Msa0116700:intron 20.0%
!!! CAAAATTTAAGGTATAAACA+TGG + chr1_3:35813934-35813953 None:intergenic 20.0%
!! CATATAAAAGGCAAAATTTA+AGG + chr1_3:35813945-35813964 None:intergenic 20.0%
!! ATACACTAATTAGTGAATAA+CGG + chr1_3:35814180-35814199 None:intergenic 20.0%
!!! CTTTCATTTCACTTTTTCTT+AGG - chr1_3:35806051-35806070 Msa0116700:three_prime_UTR 25.0%
! ATAAACAAACGCAGAATAAT+CGG + chr1_3:35806205-35806224 None:intergenic 25.0%
! CAACGTATACAAAAAATAAG+CGG + chr1_3:35806243-35806262 None:intergenic 25.0%
!!! TTTTTCCTCTCTTTGTTTTT+AGG - chr1_3:35806567-35806586 Msa0116700:three_prime_UTR 25.0%
!!! TTTTCCTCTCTTTGTTTTTA+GGG - chr1_3:35806568-35806587 Msa0116700:three_prime_UTR 25.0%
!!! ATTGTTTTCTTGTTGTCATT+AGG - chr1_3:35806736-35806755 Msa0116700:three_prime_UTR 25.0%
!!! TTGTTTTCTTGTTGTCATTA+GGG - chr1_3:35806737-35806756 Msa0116700:three_prime_UTR 25.0%
! ATGATACACATGTAAGAAAA+TGG + chr1_3:35806958-35806977 None:intergenic 25.0%
! AAGAACTCATAATATGTCTT+CGG + chr1_3:35807110-35807129 None:intergenic 25.0%
! TATCAATTGAAGGGATAAAA+TGG + chr1_3:35807763-35807782 None:intergenic 25.0%
! TCTACCTAATTATCATTTGA+AGG - chr1_3:35808006-35808025 Msa0116700:intron 25.0%
!!! GTTCATTTTTTTGTACTAGA+AGG - chr1_3:35808141-35808160 Msa0116700:intron 25.0%
!!! TAAGGATATACCATTTTGAT+TGG - chr1_3:35808177-35808196 Msa0116700:intron 25.0%
!!! AAGGATATACCATTTTGATT+GGG - chr1_3:35808178-35808197 Msa0116700:intron 25.0%
! TGGATTAAACTTTGTAGAAT+GGG - chr1_3:35808386-35808405 Msa0116700:intron 25.0%
! TATTATTCCGGAAATAATTC+TGG - chr1_3:35808420-35808439 Msa0116700:intron 25.0%
! TAAAACTGAAAAGATAACAC+AGG - chr1_3:35808494-35808513 Msa0116700:intron 25.0%
! AAAACTGAAAAGATAACACA+GGG - chr1_3:35808495-35808514 Msa0116700:intron 25.0%
! TACGTAAGGAAATAATTTAG+TGG + chr1_3:35808668-35808687 None:intergenic 25.0%
! TGCTAATACTAATTCATCTT+TGG + chr1_3:35808895-35808914 None:intergenic 25.0%
! AATTAGTATTAGCATTTGCA+AGG - chr1_3:35808901-35808920 Msa0116700:intron 25.0%
! TACCAAATGAATACACAATA+TGG + chr1_3:35809026-35809045 None:intergenic 25.0%
! TGACATATTTGTGGAAATTA+TGG + chr1_3:35809180-35809199 None:intergenic 25.0%
! ATACTTGTTTGACATATTTG+TGG + chr1_3:35809189-35809208 None:intergenic 25.0%
! ACAAATATGTCAAACAAGTA+TGG - chr1_3:35809188-35809207 Msa0116700:CDS 25.0%
! CAAATATGTCAAACAAGTAT+GGG - chr1_3:35809189-35809208 Msa0116700:CDS 25.0%
!! ATCTTCTTTGATTGTAGTTT+TGG - chr1_3:35809347-35809366 Msa0116700:CDS 25.0%
!! TTTTGTCTTTTGTGTGTTAA+AGG - chr1_3:35809370-35809389 Msa0116700:CDS 25.0%
!! ACTTACATCTAAAGAACTTT+TGG + chr1_3:35809511-35809530 None:intergenic 25.0%
! ATTAATGAACATTACTTCTG+TGG - chr1_3:35809531-35809550 Msa0116700:CDS 25.0%
! TGTGGTAAACTTATTTATTG+TGG - chr1_3:35809549-35809568 Msa0116700:CDS 25.0%
! GTGGTAAACTTATTTATTGT+GGG - chr1_3:35809550-35809569 Msa0116700:CDS 25.0%
! ACTAAAAAAAATGCTAGAAG+TGG + chr1_3:35809942-35809961 None:intergenic 25.0%
!!! ACTTTTTGGTATATTGTACT+AGG - chr1_3:35809972-35809991 Msa0116700:CDS 25.0%
!!! CTTTTTGGTATATTGTACTA+GGG - chr1_3:35809973-35809992 Msa0116700:CDS 25.0%
! TCTTGATACAAAAAAATCAG+GGG - chr1_3:35810132-35810151 Msa0116700:CDS 25.0%
! TTGTTAGTATTCAAATCATG+TGG + chr1_3:35810400-35810419 None:intergenic 25.0%
! ACATGATTTGAATACTAACA+AGG - chr1_3:35810399-35810418 Msa0116700:intron 25.0%
! TTGAAGATTCATATTTCACT+CGG - chr1_3:35810488-35810507 Msa0116700:CDS 25.0%
!! AGATTCAATAGTTAAGTTGT+TGG - chr1_3:35810954-35810973 Msa0116700:intron 25.0%
!! TGGATTTTTCCTTAAAAATC+CGG - chr1_3:35811490-35811509 Msa0116700:intron 25.0%
! TAATAGCTATGACATAATGT+TGG - chr1_3:35811664-35811683 Msa0116700:intron 25.0%
! CATTAATTTAGTGCTTCTAT+AGG - chr1_3:35811693-35811712 Msa0116700:intron 25.0%
! TTATTCCTGTATATATGTTC+TGG - chr1_3:35811824-35811843 Msa0116700:intron 25.0%
! GATGTCTTTATGAAGTTATT+TGG - chr1_3:35811846-35811865 Msa0116700:intron 25.0%
! AACCATTCGAAAATATTTAG+AGG - chr1_3:35812265-35812284 Msa0116700:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG + chr1_3:35812305-35812324 None:intergenic 25.0%
! TTTCAGATCATATTGGAAAT+AGG - chr1_3:35813129-35813148 Msa0116700:intron 25.0%
! AATGATTCCAATTATTTCAG+TGG - chr1_3:35813293-35813312 Msa0116700:intron 25.0%
! GTATTGAATAATGAAATAGG+GGG - chr1_3:35813332-35813351 Msa0116700:CDS 25.0%
! AACTTGATATTCTCATAACT+AGG + chr1_3:35813374-35813393 None:intergenic 25.0%
!!! ATCTTTTAACATTTTGAGAC+AGG + chr1_3:35813512-35813531 None:intergenic 25.0%
! ATAATTGTGACAGAATTTCA+GGG + chr1_3:35813612-35813631 None:intergenic 25.0%
! TCAGAAACTGATCATATAAA+AGG + chr1_3:35813957-35813976 None:intergenic 25.0%
!!! TCTATTTTTGCAGTTAAACT+GGG - chr1_3:35813994-35814013 Msa0116700:intron 25.0%
! AATTCTGAACAAACAATTTC+AGG + chr1_3:35814138-35814157 None:intergenic 25.0%
!!! TGTATGTACAAAGTTAGTTT+TGG - chr1_3:35814224-35814243 Msa0116700:five_prime_UTR 25.0%
! AACTCTATTTGGTAAAAAGT+TGG + chr1_3:35814263-35814282 None:intergenic 25.0%
AATGAAGAATCTCGAAATGA+GGG + chr1_3:35806021-35806040 None:intergenic 30.0%
AAATGAAGAATCTCGAAATG+AGG + chr1_3:35806022-35806041 None:intergenic 30.0%
AAGTGAAATGAAAGTAACGA+GGG + chr1_3:35806045-35806064 None:intergenic 30.0%
AAAGTGAAATGAAAGTAACG+AGG + chr1_3:35806046-35806065 None:intergenic 30.0%
ATCTTCACATGTTGAAATCA+CGG + chr1_3:35806177-35806196 None:intergenic 30.0%
AAACCAGTCACAAAAAATGA+CGG + chr1_3:35806390-35806409 None:intergenic 30.0%
AAAACCCTAAAAACAAAGAG+AGG + chr1_3:35806575-35806594 None:intergenic 30.0%
AGATGAAAAAACCTATTTGG+TGG - chr1_3:35807153-35807172 Msa0116700:CDS 30.0%
GATGAAAAAACCTATTTGGT+GGG - chr1_3:35807154-35807173 Msa0116700:CDS 30.0%
! AAAAGCAAGAAAAGCATAAC+AGG - chr1_3:35807227-35807246 Msa0116700:CDS 30.0%
! TTGGCATCATATAATGGAAA+TGG - chr1_3:35807302-35807321 Msa0116700:intron 30.0%
! TATAATGGAAATGGCTCATA+AGG - chr1_3:35807311-35807330 Msa0116700:intron 30.0%
TTAAAGCCTAAATCATCAGA+TGG - chr1_3:35807541-35807560 Msa0116700:intron 30.0%
CCAACCTTCAAATGATAATT+AGG + chr1_3:35808013-35808032 None:intergenic 30.0%
CCTAATTATCATTTGAAGGT+TGG - chr1_3:35808010-35808029 Msa0116700:intron 30.0%
ATCATTTGAAGGTTGGAATT+TGG - chr1_3:35808017-35808036 Msa0116700:intron 30.0%
AAGTAACAACCCAATCAAAA+TGG + chr1_3:35808190-35808209 None:intergenic 30.0%
! TTTTCGTGATTTTGTGATGA+TGG - chr1_3:35808216-35808235 Msa0116700:intron 30.0%
! TTTCGTGATTTTGTGATGAT+GGG - chr1_3:35808217-35808236 Msa0116700:intron 30.0%
CTGGATTAAACTTTGTAGAA+TGG - chr1_3:35808385-35808404 Msa0116700:intron 30.0%
! CTCTTGTAAATCTACGATTT+TGG + chr1_3:35808464-35808483 None:intergenic 30.0%
AGGAAATAATTTAGTGGTTC+AGG + chr1_3:35808662-35808681 None:intergenic 30.0%
AATTAAGTAGCAGATTGCAT+GGG + chr1_3:35808717-35808736 None:intergenic 30.0%
TAATTAAGTAGCAGATTGCA+TGG + chr1_3:35808718-35808737 None:intergenic 30.0%
CTACTACTATGGTCTATATT+AGG + chr1_3:35808773-35808792 None:intergenic 30.0%
CTAATATAGACCATAGTAGT+AGG - chr1_3:35808771-35808790 Msa0116700:intron 30.0%
TGTTTGTATCTACATGATCA+TGG - chr1_3:35808849-35808868 Msa0116700:intron 30.0%
GACCATATTGTGTATTCATT+TGG - chr1_3:35809021-35809040 Msa0116700:CDS 30.0%
! TCAATGTCTTTTTACTTCTC+TGG - chr1_3:35809069-35809088 Msa0116700:CDS 30.0%
TGAAAGCAATCAAACTTAAG+AGG + chr1_3:35809103-35809122 None:intergenic 30.0%
ATCATGCATAACATAGTCTT+AGG - chr1_3:35809149-35809168 Msa0116700:CDS 30.0%
AAATAAAGAGGTCATACAGA+AGG + chr1_3:35809245-35809264 None:intergenic 30.0%
! TATGACCTCTTTATTTGTCT+TGG - chr1_3:35809249-35809268 Msa0116700:CDS 30.0%
! TTTTGTGTGTTAAAGGAGTA+GGG - chr1_3:35809377-35809396 Msa0116700:CDS 30.0%
AATAATTTGAATCGTCCTTC+AGG - chr1_3:35809423-35809442 Msa0116700:CDS 30.0%
ATAATTTGAATCGTCCTTCA+GGG - chr1_3:35809424-35809443 Msa0116700:CDS 30.0%
AAGAACCAGATTAAAGAATC+CGG - chr1_3:35809668-35809687 Msa0116700:CDS 30.0%
ATAAATCCATTACCAAGAGT+TGG + chr1_3:35809735-35809754 None:intergenic 30.0%
!!! TCGCATTAATTTGTTTTGCA+TGG - chr1_3:35809770-35809789 Msa0116700:CDS 30.0%
AACTGCCATAAAAATATAGC+TGG + chr1_3:35809893-35809912 None:intergenic 30.0%
!! GAAGTGGATTTGTTATTTCA+TGG + chr1_3:35809926-35809945 None:intergenic 30.0%
TGTATCAAGAATAGACCTTT+CGG + chr1_3:35810122-35810141 None:intergenic 30.0%
TGAGTCAATTGTTATCAATG+AGG - chr1_3:35810249-35810268 Msa0116700:intron 30.0%
TGAAGATTCATATTTCACTC+GGG - chr1_3:35810489-35810508 Msa0116700:CDS 30.0%
CACAATTATATCTTCCCAAA+AGG + chr1_3:35810617-35810636 None:intergenic 30.0%
!! CTTTTGGGAAGATATAATTG+TGG - chr1_3:35810615-35810634 Msa0116700:intron 30.0%
GGTTCAGTAAAATATTCAGA+AGG + chr1_3:35810802-35810821 None:intergenic 30.0%
! TGAATATTTTACTGAACCCT+TGG - chr1_3:35810804-35810823 Msa0116700:intron 30.0%
! GAATATTTTACTGAACCCTT+GGG - chr1_3:35810805-35810824 Msa0116700:intron 30.0%
! AATATTTTACTGAACCCTTG+GGG - chr1_3:35810806-35810825 Msa0116700:intron 30.0%
! ATTCAAGGAATCATTTTGTC+TGG + chr1_3:35811064-35811083 None:intergenic 30.0%
!!! CAAATCAGAGGTTTTATTCA+AGG + chr1_3:35811079-35811098 None:intergenic 30.0%
AACTCACTGGAAAATTTAGA+GGG + chr1_3:35811261-35811280 None:intergenic 30.0%
AAACTCACTGGAAAATTTAG+AGG + chr1_3:35811262-35811281 None:intergenic 30.0%
GTTACTCATTAACACACATT+GGG + chr1_3:35811312-35811331 None:intergenic 30.0%
TGTTACTCATTAACACACAT+TGG + chr1_3:35811313-35811332 None:intergenic 30.0%
AAGTACTTCATCTTTGAGTA+TGG - chr1_3:35811338-35811357 Msa0116700:intron 30.0%
! TAAGTGTTTTCTTTCCAATC+AGG - chr1_3:35811365-35811384 Msa0116700:intron 30.0%
! ATAGATTCTCCGGATTTTTA+AGG + chr1_3:35811502-35811521 None:intergenic 30.0%
TAAGTGAACGAGAAAGATAA+AGG + chr1_3:35811530-35811549 None:intergenic 30.0%
TTTCTCGTTCACTTAATTGA+TGG - chr1_3:35811535-35811554 Msa0116700:intron 30.0%
CACTTAATTGATGGAGTAAA+TGG - chr1_3:35811544-35811563 Msa0116700:intron 30.0%
ATCAACAATGTTGCAATCTT+TGG - chr1_3:35811880-35811899 Msa0116700:intron 30.0%
!! GCTTTAAAACTAGCCAATTA+AGG - chr1_3:35811984-35812003 Msa0116700:intron 30.0%
!!! GTTGCACTTTTTTAATAGGT+TGG + chr1_3:35812027-35812046 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr1_3:35812189-35812208 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr1_3:35812190-35812209 Msa0116700:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + chr1_3:35812248-35812267 None:intergenic 30.0%
! TTTTCGAATGGTTTCTCTAA+TGG + chr1_3:35812258-35812277 None:intergenic 30.0%
! GACCTCTAAATATTTTCGAA+TGG + chr1_3:35812270-35812289 None:intergenic 30.0%
ATATTTAGAGGTCAATGAGT+TGG - chr1_3:35812277-35812296 Msa0116700:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr1_3:35812309-35812328 Msa0116700:CDS 30.0%
AACATATCATGATACACCAA+GGG + chr1_3:35812499-35812518 None:intergenic 30.0%
AAACATATCATGATACACCA+AGG + chr1_3:35812500-35812519 None:intergenic 30.0%
! AATAGTACACCTTTTAACCT+GGG - chr1_3:35813011-35813030 Msa0116700:intron 30.0%
TCAAGACTTTCAGATCATAT+TGG - chr1_3:35813122-35813141 Msa0116700:intron 30.0%
ATGCTTATAGAACTAATTCG+AGG - chr1_3:35813168-35813187 Msa0116700:intron 30.0%
CAGTTCAGTAGTAATATTCT+TGG - chr1_3:35813245-35813264 Msa0116700:intron 30.0%
ATTAGTTGTTCAGTCAATTC+AGG + chr1_3:35813403-35813422 None:intergenic 30.0%
GACTGAACAACTAATATTCA+TGG - chr1_3:35813408-35813427 Msa0116700:intron 30.0%
TGAACAACTAATATTCATGG+TGG - chr1_3:35813411-35813430 Msa0116700:intron 30.0%
TGTTAAAAGATCCCTTTATG+TGG - chr1_3:35813521-35813540 Msa0116700:intron 30.0%
! AGACTTGTTTCAAATCTGTT+TGG - chr1_3:35813576-35813595 Msa0116700:intron 30.0%
CATAATTGTGACAGAATTTC+AGG + chr1_3:35813613-35813632 None:intergenic 30.0%
!! AACGATGTCAACTTTTTCTA+TGG - chr1_3:35813740-35813759 Msa0116700:intron 30.0%
!! ACGATGTCAACTTTTTCTAT+GGG - chr1_3:35813741-35813760 Msa0116700:intron 30.0%
ATAAACATGGAGCAATCTTA+GGG + chr1_3:35813921-35813940 None:intergenic 30.0%
TATAAACATGGAGCAATCTT+AGG + chr1_3:35813922-35813941 None:intergenic 30.0%
!!! CTCTATTTTTGCAGTTAAAC+TGG - chr1_3:35813993-35814012 Msa0116700:intron 30.0%
GAAACTACAATCGAAGTTAT+AGG - chr1_3:35814044-35814063 Msa0116700:intron 30.0%
! TCAGAATTTGTTTCCAAACT+CGG - chr1_3:35814150-35814169 Msa0116700:intron 30.0%
GTATACGTTGTCAGAGTTAA+CGG - chr1_3:35806253-35806272 Msa0116700:intron 35.0%
ACGGAATGTTCATTTCTGTT+AGG - chr1_3:35806272-35806291 Msa0116700:intron 35.0%
CGGAATGTTCATTTCTGTTA+GGG - chr1_3:35806273-35806292 Msa0116700:intron 35.0%
! AATGTTGATGTGCTGTGTTT+TGG - chr1_3:35806482-35806501 Msa0116700:three_prime_UTR 35.0%
CTGAGTAGGTTTATCATTTC+TGG - chr1_3:35806535-35806554 Msa0116700:three_prime_UTR 35.0%
! TATTGTGCAGCTTTTGTCAT+TGG - chr1_3:35806618-35806637 Msa0116700:three_prime_UTR 35.0%
TGAATACCGTGGAGAAAAAT+GGG - chr1_3:35806790-35806809 Msa0116700:CDS 35.0%
TAATCTACCGTTGAATACTC+TGG - chr1_3:35806977-35806996 Msa0116700:CDS 35.0%
! CATCAAACCAGAGTATTCAA+CGG + chr1_3:35806987-35807006 None:intergenic 35.0%
! TCTTTTCACAGATCTGTGTA+TGG - chr1_3:35807277-35807296 Msa0116700:CDS 35.0%
!! ATGGTGTTGGCATCATATAA+TGG - chr1_3:35807296-35807315 Msa0116700:intron 35.0%
GTTCTTTGTCATAAGGTGAA+CGG + chr1_3:35807365-35807384 None:intergenic 35.0%
ACAATGCGTTCTTTGTCATA+AGG + chr1_3:35807372-35807391 None:intergenic 35.0%
TTATGACAAAGAACGCATTG+TGG - chr1_3:35807371-35807390 Msa0116700:intron 35.0%
TTCCTTCCATCTGATGATTT+AGG + chr1_3:35807550-35807569 None:intergenic 35.0%
TTCCTACTTGAACAACACTT+TGG + chr1_3:35807951-35807970 None:intergenic 35.0%
! GGAATTTGGAATTTGTTCCT+TGG - chr1_3:35808031-35808050 Msa0116700:intron 35.0%
TACTAGAAGGTAGATCATTG+AGG - chr1_3:35808154-35808173 Msa0116700:intron 35.0%
!! GGTGGTTATTTTCATTTGCA+GGG - chr1_3:35808238-35808257 Msa0116700:intron 35.0%
ACATAGTAGCACAAAGATGT+AGG + chr1_3:35808359-35808378 None:intergenic 35.0%
! TGTGCTACTATGTTAGAAAC+TGG - chr1_3:35808366-35808385 Msa0116700:intron 35.0%
ACTGGTACCAGAATTATTTC+CGG + chr1_3:35808430-35808449 None:intergenic 35.0%
GAAATAATTCTGGTACCAGT+AGG - chr1_3:35808430-35808449 Msa0116700:intron 35.0%
AAATGAGTAGTCCTACAAGT+CGG + chr1_3:35808549-35808568 None:intergenic 35.0%
! CTTGTAGGACTACTCATTTT+CGG - chr1_3:35808550-35808569 Msa0116700:intron 35.0%
ATGAGTTAGGGTGAAGAAAA+AGG + chr1_3:35808576-35808595 None:intergenic 35.0%
ATTTCCTTACGTACATCACT+AGG - chr1_3:35808675-35808694 Msa0116700:intron 35.0%
TATATTAGGATACAGCGGAA+AGG + chr1_3:35808759-35808778 None:intergenic 35.0%
TGGTCTATATTAGGATACAG+CGG + chr1_3:35808764-35808783 None:intergenic 35.0%
TAGCATTTGCAAGGTATGAT+TGG - chr1_3:35808910-35808929 Msa0116700:intron 35.0%
! TCTTTTTACTTCTCTGGTGT+TGG - chr1_3:35809075-35809094 Msa0116700:CDS 35.0%
GACTATGTTATGCATGATGT+AGG + chr1_3:35809147-35809166 None:intergenic 35.0%
AAACAAGTATGGGTATGTCA+TGG - chr1_3:35809199-35809218 Msa0116700:CDS 35.0%
GCAATCCAAGACAAATAAAG+AGG + chr1_3:35809257-35809276 None:intergenic 35.0%
! TGAGAGTATGTCTAACTAGA+AGG + chr1_3:35809288-35809307 None:intergenic 35.0%
! CTTTTGTGTGTTAAAGGAGT+AGG - chr1_3:35809376-35809395 Msa0116700:CDS 35.0%
! TTGTAGCACCAATGATTTGT+AGG + chr1_3:35809404-35809423 None:intergenic 35.0%
! GATACATGTTTAGGATCATC+TGG + chr1_3:35809468-35809487 None:intergenic 35.0%
! AGAACTTTTGGACACTACTT+TGG + chr1_3:35809499-35809518 None:intergenic 35.0%
! CTGGTTCTTAATTGTCAAGA+TGG + chr1_3:35809657-35809676 None:intergenic 35.0%
TTGAACCGGATTCTTTAATC+TGG + chr1_3:35809676-35809695 None:intergenic 35.0%
!!! ATTTGTTTTGCATGGCAGTA+CGG - chr1_3:35809778-35809797 Msa0116700:CDS 35.0%
!! CGTCACCAGCTATATTTTTA+TGG - chr1_3:35809885-35809904 Msa0116700:CDS 35.0%
!! GTGGATTTGTTATTTCATGG+TGG + chr1_3:35809923-35809942 None:intergenic 35.0%
GAAGATGAACTAGTATCCTT+TGG + chr1_3:35810022-35810041 None:intergenic 35.0%
! TGAAGGTACAGATACACTAT+TGG + chr1_3:35810188-35810207 None:intergenic 35.0%
TGATGTTTGTTCAACTCTGA+AGG + chr1_3:35810205-35810224 None:intergenic 35.0%
GAGTTGAACAAACATCACAT+TGG - chr1_3:35810208-35810227 Msa0116700:intron 35.0%
TTGAACAAACATCACATTGG+TGG - chr1_3:35810211-35810230 Msa0116700:intron 35.0%
AGTATTCAAATCATGTGGTG+CGG + chr1_3:35810395-35810414 None:intergenic 35.0%
CTAACAAGGCAGTTTCAAAT+CGG - chr1_3:35810413-35810432 Msa0116700:intron 35.0%
TAACAAGGCAGTTTCAAATC+GGG - chr1_3:35810414-35810433 Msa0116700:intron 35.0%
TTCATATTTCACTCGGGATT+CGG - chr1_3:35810495-35810514 Msa0116700:CDS 35.0%
ATTATATCTTCCCAAAAGGC+TGG + chr1_3:35810613-35810632 None:intergenic 35.0%
ATTCGTAACCAGAATCATTC+AGG - chr1_3:35810772-35810791 Msa0116700:CDS 35.0%
TTCGTAACCAGAATCATTCA+GGG - chr1_3:35810773-35810792 Msa0116700:CDS 35.0%
! ATATTTTACTGAACCCTTGG+GGG - chr1_3:35810807-35810826 Msa0116700:intron 35.0%
AAATGATTGCTGCAAATCAG+AGG + chr1_3:35811091-35811110 None:intergenic 35.0%
! TCTGATTTGCAGCAATCATT+TGG - chr1_3:35811090-35811109 Msa0116700:intron 35.0%
! CTGATTTGCAGCAATCATTT+GGG - chr1_3:35811091-35811110 Msa0116700:intron 35.0%
! TGATTTGCAGCAATCATTTG+GGG - chr1_3:35811092-35811111 Msa0116700:intron 35.0%
ATAGCACAGAATTGCTTGAT+GGG + chr1_3:35811206-35811225 None:intergenic 35.0%
ATCAAGCAATTCTGTGCTAT+CGG - chr1_3:35811206-35811225 Msa0116700:intron 35.0%
GTGCTATCGGATAAATTTGA+TGG - chr1_3:35811219-35811238 Msa0116700:intron 35.0%
ATTTGATGGAAGTCTGTCTT+TGG - chr1_3:35811233-35811252 Msa0116700:intron 35.0%
TACTTCATCTTTGAGTATGG+TGG - chr1_3:35811341-35811360 Msa0116700:intron 35.0%
GACAATACAGAAAACCTGAT+TGG + chr1_3:35811382-35811401 None:intergenic 35.0%
ATCCTGCTTGCTCAATTAAT+TGG - chr1_3:35811470-35811489 Msa0116700:intron 35.0%
ATCCAATTAATTGAGCAAGC+AGG + chr1_3:35811475-35811494 None:intergenic 35.0%
AAAGGTGAGAATAGATTCTC+CGG + chr1_3:35811512-35811531 None:intergenic 35.0%
TGAAACACATTCATTGTCGA+TGG - chr1_3:35811580-35811599 Msa0116700:intron 35.0%
! TTCTGTCATTTGCTTGTGAA+TGG - chr1_3:35811744-35811763 Msa0116700:CDS 35.0%
! CTTGTGAATGGAAAGTATGA+TGG - chr1_3:35811756-35811775 Msa0116700:CDS 35.0%
GACATCCAGAACATATATAC+AGG + chr1_3:35811832-35811851 None:intergenic 35.0%
!! GTGCATGAACTTTAGCTTTA+CGG - chr1_3:35811939-35811958 Msa0116700:intron 35.0%
TTCTACTATAGGTGCTAAGT+TGG - chr1_3:35812112-35812131 Msa0116700:intron 35.0%
!! GTGCTAAGTTGGTAGAAAAT+AGG - chr1_3:35812123-35812142 Msa0116700:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr1_3:35812132-35812151 Msa0116700:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr1_3:35812137-35812156 Msa0116700:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr1_3:35812193-35812212 Msa0116700:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr1_3:35812289-35812308 Msa0116700:CDS 35.0%
ATGCATCTTTAATAAAGCGG+AGG - chr1_3:35812444-35812463 Msa0116700:intron 35.0%
!! ATAGTAGAAGTTTTGTCCCT+TGG - chr1_3:35812480-35812499 Msa0116700:intron 35.0%
TTTCCTCTGTCTTTCATTAG+TGG - chr1_3:35812647-35812666 Msa0116700:CDS 35.0%
GAACAGAGTTGTAATAGTTC+TGG - chr1_3:35812747-35812766 Msa0116700:intron 35.0%
! AGTTCTGGTATAACTCTTCA+TGG - chr1_3:35812762-35812781 Msa0116700:intron 35.0%
ATCCTGCTGATATTTACAGA+TGG + chr1_3:35812924-35812943 None:intergenic 35.0%
TCTGTAAATATCAGCAGGAT+AGG - chr1_3:35812924-35812943 Msa0116700:intron 35.0%
TGTTGAGTTCAAGAATCCTA+TGG - chr1_3:35812950-35812969 Msa0116700:intron 35.0%
TATGGTATTTGACCCTAGTA+GGG - chr1_3:35812968-35812987 Msa0116700:intron 35.0%
! GAATAGTACACCTTTTAACC+TGG - chr1_3:35813010-35813029 Msa0116700:intron 35.0%
! ATAGTACACCTTTTAACCTG+GGG - chr1_3:35813012-35813031 Msa0116700:intron 35.0%
GTTCTATAAGCATCACTTTG+AGG + chr1_3:35813161-35813180 None:intergenic 35.0%
GAATGCAGTTGTTCAGAAAA+TGG + chr1_3:35813221-35813240 None:intergenic 35.0%
TTCTTGGTTCAAATAACCAG+TGG - chr1_3:35813261-35813280 Msa0116700:intron 35.0%
TCTTGGTTCAAATAACCAGT+GGG - chr1_3:35813262-35813281 Msa0116700:intron 35.0%
TCAATACTTCAGACATAGAC+AGG + chr1_3:35813319-35813338 None:intergenic 35.0%
TTTCCCTTCAATGCACTAAT+AGG - chr1_3:35813459-35813478 Msa0116700:intron 35.0%
CACAATTTCAGCCACATAAA+GGG + chr1_3:35813535-35813554 None:intergenic 35.0%
ACACAATTTCAGCCACATAA+AGG + chr1_3:35813536-35813555 None:intergenic 35.0%
TTTATGTGGCTGAAATTGTG+TGG - chr1_3:35813535-35813554 Msa0116700:intron 35.0%
! CAGATTTGAAACAAGTCTCA+AGG + chr1_3:35813574-35813593 None:intergenic 35.0%
GTCACAATTATGCCATCAAA+TGG - chr1_3:35813621-35813640 Msa0116700:intron 35.0%
TTATGCCATCAAATGGTCAA+CGG - chr1_3:35813628-35813647 Msa0116700:intron 35.0%
!! CGATGTCAACTTTTTCTATG+GGG - chr1_3:35813742-35813761 Msa0116700:intron 35.0%
! TTTTCTATGGGGTAAATGTC+AGG - chr1_3:35813753-35813772 Msa0116700:intron 35.0%
! TTCAAAAGGGAAAGTACAAG+TGG + chr1_3:35813891-35813910 None:intergenic 35.0%
TTAGGGCAGAGATTTCAAAA+GGG + chr1_3:35813904-35813923 None:intergenic 35.0%
TGGGAAATTCATGCTATGAA+TGG - chr1_3:35814076-35814095 Msa0116700:intron 35.0%
CATGCTATGAATGGTGAAAT+AGG - chr1_3:35814085-35814104 Msa0116700:intron 35.0%
AGAAAAGCTTACACTGAGAG+CGG + chr1_3:35805985-35806004 None:intergenic 40.0%
GAATCTCGAAATGAGGGTTA+GGG + chr1_3:35806015-35806034 None:intergenic 40.0%
AGAATCTCGAAATGAGGGTT+AGG + chr1_3:35806016-35806035 None:intergenic 40.0%
!!! TTGCCGTCATTTTTTGTGAC+TGG - chr1_3:35806384-35806403 Msa0116700:intron 40.0%
TTTGGACCAATGAGTTTCAC+TGG - chr1_3:35806500-35806519 Msa0116700:three_prime_UTR 40.0%
CCATAACCAGTGAAACTCAT+TGG + chr1_3:35806509-35806528 None:intergenic 40.0%
! CCAATGAGTTTCACTGGTTA+TGG - chr1_3:35806506-35806525 Msa0116700:three_prime_UTR 40.0%
TATTGTGTAGCTGAATACCG+TGG - chr1_3:35806779-35806798 Msa0116700:exon 40.0%
CTGAATACCGTGGAGAAAAA+TGG - chr1_3:35806789-35806808 Msa0116700:CDS 40.0%
TCCATCTCTTCGGTACATAT+CGG + chr1_3:35806838-35806857 None:intergenic 40.0%
ACAAAAGCAACCCACCAAAT+AGG + chr1_3:35807167-35807186 None:intergenic 40.0%
AACTGTCGAAGGTTGAGTTA+TGG - chr1_3:35807405-35807424 Msa0116700:intron 40.0%
AGCCTAAATCATCAGATGGA+AGG - chr1_3:35807545-35807564 Msa0116700:intron 40.0%
AACTCACATCTTCATCTGCA+AGG + chr1_3:35807636-35807655 None:intergenic 40.0%
TGTTGCTAGATGTAACTGTG+TGG - chr1_3:35807680-35807699 Msa0116700:intron 40.0%
! GTACTTTGGAAGGTATGGAA+AGG - chr1_3:35807823-35807842 Msa0116700:intron 40.0%
!! CACCAAAGTGTTGTTCAAGT+AGG - chr1_3:35807946-35807965 Msa0116700:intron 40.0%
GAAGGTAGATCATTGAGGTA+AGG - chr1_3:35808159-35808178 Msa0116700:intron 40.0%
!! GGGTGGTTATTTTCATTTGC+AGG - chr1_3:35808237-35808256 Msa0116700:intron 40.0%
!! TTCATTTGCAGGGCTTGTTT+TGG - chr1_3:35808248-35808267 Msa0116700:intron 40.0%
CCATGCATGACAATACTTTG+TGG + chr1_3:35808276-35808295 None:intergenic 40.0%
!! CCACAAAGTATTGTCATGCA+TGG - chr1_3:35808273-35808292 Msa0116700:intron 40.0%
ACAACACAAAAAGGGAATCC+AGG + chr1_3:35808637-35808656 None:intergenic 40.0%
TTCAGGCGACAACACAAAAA+GGG + chr1_3:35808645-35808664 None:intergenic 40.0%
ATACAGCGGAAAGGAAAACA+GGG + chr1_3:35808750-35808769 None:intergenic 40.0%
ATGTGAGGAACCTACTACTA+TGG + chr1_3:35808784-35808803 None:intergenic 40.0%
AAACAGTCTCTATTGCTGCA+AGG + chr1_3:35808834-35808853 None:intergenic 40.0%
AAAGAGGTCATACAGAAGGA+AGG + chr1_3:35809241-35809260 None:intergenic 40.0%
AGTAGGGTCCTACAAATCAT+TGG - chr1_3:35809393-35809412 Msa0116700:CDS 40.0%
! ACATGTTTAGGATCATCTGG+TGG + chr1_3:35809465-35809484 None:intergenic 40.0%
GTGGCTGATGATACATGTTT+AGG + chr1_3:35809477-35809496 None:intergenic 40.0%
! ACTTTTGGACACTACTTTGG+TGG + chr1_3:35809496-35809515 None:intergenic 40.0%
AAAGAATCCGGTTCAAGCAA+TGG - chr1_3:35809680-35809699 Msa0116700:CDS 40.0%
!!! TAGTGTGAACGCTGACTTTT+TGG - chr1_3:35809958-35809977 Msa0116700:CDS 40.0%
TGGTATATTGTACTAGGGCA+AGG - chr1_3:35809978-35809997 Msa0116700:CDS 40.0%
AGGTACAGATACACTATTGG+TGG + chr1_3:35810185-35810204 None:intergenic 40.0%
GTTACTGTGACGAAACTTTC+TGG - chr1_3:35810271-35810290 Msa0116700:intron 40.0%
ATGCTTCCCTAAAGAGGAAT+CGG + chr1_3:35810548-35810567 None:intergenic 40.0%
ATGCAAATGCTTCCCTAAAG+AGG + chr1_3:35810554-35810573 None:intergenic 40.0%
TAAATTATCGCTGCCTTTGC+CGG + chr1_3:35810677-35810696 None:intergenic 40.0%
ACAATGAGGTGAATAATGCC+TGG + chr1_3:35810704-35810723 None:intergenic 40.0%
CTTAGATTCTGAGCACAATG+AGG + chr1_3:35810718-35810737 None:intergenic 40.0%
! GATTTTCCTGCTTCAGATGA+TGG + chr1_3:35810750-35810769 None:intergenic 40.0%
AACAAGGTTTCTTCAGACGT+CGG - chr1_3:35810880-35810899 Msa0116700:intron 40.0%
!! TGTCTTTGGAACTAGATGCA+TGG - chr1_3:35810929-35810948 Msa0116700:intron 40.0%
!! GTCTTTGGAACTAGATGCAT+GGG - chr1_3:35810930-35810949 Msa0116700:intron 40.0%
TCCAAGACAATAATCAGTCC+AGG - chr1_3:35811028-35811047 Msa0116700:intron 40.0%
ACCTGGACTGATTATTGTCT+TGG + chr1_3:35811032-35811051 None:intergenic 40.0%
! GGAATCATTTTGTCTGGCAA+AGG + chr1_3:35811058-35811077 None:intergenic 40.0%
TTGCTGGACATGATCCTAAA+GGG - chr1_3:35811115-35811134 Msa0116700:intron 40.0%
CCAGATGCATAATTCCCTTT+AGG + chr1_3:35811132-35811151 None:intergenic 40.0%
CCTAAAGGGAATTATGCATC+TGG - chr1_3:35811129-35811148 Msa0116700:intron 40.0%
AAAGGGAATTATGCATCTGG+TGG - chr1_3:35811132-35811151 Msa0116700:intron 40.0%
TATGCATCTGGTGGTTGTAA+TGG - chr1_3:35811141-35811160 Msa0116700:intron 40.0%
! TGCTTGATGGGAAAGTGTAT+GGG + chr1_3:35811194-35811213 None:intergenic 40.0%
! TTGCTTGATGGGAAAGTGTA+TGG + chr1_3:35811195-35811214 None:intergenic 40.0%
GATAGCACAGAATTGCTTGA+TGG + chr1_3:35811207-35811226 None:intergenic 40.0%
! TCATGATGCCAGTTTTCTTG+TGG - chr1_3:35811446-35811465 Msa0116700:intron 40.0%
GTACAGTTGAGGTCCTTAAT+TGG + chr1_3:35812000-35812019 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr1_3:35812180-35812199 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_3:35812218-35812237 Msa0116700:intron 40.0%
ATAAAGCGGAGGTTCTTAGT+TGG - chr1_3:35812455-35812474 Msa0116700:intron 40.0%
ACTTGATATGTCACAGACAC+AGG + chr1_3:35812551-35812570 None:intergenic 40.0%
TTGCCACTAATGAAAGACAG+AGG + chr1_3:35812653-35812672 None:intergenic 40.0%
CTGCTGATATTTACAGATGG+AGG + chr1_3:35812921-35812940 None:intergenic 40.0%
CTCCATCTGTAAATATCAGC+AGG - chr1_3:35812919-35812938 Msa0116700:intron 40.0%
CTACTAGGGTCAAATACCAT+AGG + chr1_3:35812969-35812988 None:intergenic 40.0%
CTATGGTATTTGACCCTAGT+AGG - chr1_3:35812967-35812986 Msa0116700:intron 40.0%
ATGGTATTTGACCCTAGTAG+GGG - chr1_3:35812969-35812988 Msa0116700:intron 40.0%
TCTTCATTGCGACTGAATTG+AGG + chr1_3:35813050-35813069 None:intergenic 40.0%
CTTGGTTCAAATAACCAGTG+GGG - chr1_3:35813263-35813282 Msa0116700:intron 40.0%
AGACAGGCCACTGAAATAAT+TGG + chr1_3:35813303-35813322 None:intergenic 40.0%
GAGCCTATTAGTGCATTGAA+GGG + chr1_3:35813465-35813484 None:intergenic 40.0%
AGAGCCTATTAGTGCATTGA+AGG + chr1_3:35813466-35813485 None:intergenic 40.0%
GAAGCTAAGCAAACAAGAGT+GGG + chr1_3:35813663-35813682 None:intergenic 40.0%
TGAAGCTAAGCAAACAAGAG+TGG + chr1_3:35813664-35813683 None:intergenic 40.0%
AATCTGGGTCCTATGCATTA+CGG - chr1_3:35813698-35813717 Msa0116700:intron 40.0%
TTACGGTTGTCAGACATAAC+TGG - chr1_3:35813715-35813734 Msa0116700:intron 40.0%
TGTGTGCTAACATACATAGC+AGG - chr1_3:35813843-35813862 Msa0116700:intron 40.0%
TGCTAACATACATAGCAGGA+TGG - chr1_3:35813847-35813866 Msa0116700:intron 40.0%
CTTAGGGCAGAGATTTCAAA+AGG + chr1_3:35813905-35813924 None:intergenic 40.0%
ATCGAAGTTATAGGCCTTAC+TGG - chr1_3:35814053-35814072 Msa0116700:intron 40.0%
AAGTTATAGGCCTTACTGGT+GGG - chr1_3:35814057-35814076 Msa0116700:intron 40.0%
! GAATAACGGAATACCGAGTT+TGG + chr1_3:35814166-35814185 None:intergenic 40.0%
GTGAGTGAATGAGAGAGAGA+AGG + chr1_3:35805913-35805932 None:intergenic 45.0%
TCGAAATGAGGGTTAGGGTT+TGG + chr1_3:35806010-35806029 None:intergenic 45.0%
GGTTATGGTGCATTCTGAGT+AGG - chr1_3:35806521-35806540 Msa0116700:three_prime_UTR 45.0%
! TGTGCAGCTTTTGTCATTGG+TGG - chr1_3:35806621-35806640 Msa0116700:three_prime_UTR 45.0%
!! TTGTCGCCCATTTTTCTCCA+CGG + chr1_3:35806799-35806818 None:intergenic 45.0%
TGGAGAAAAATGGGCGACAA+AGG - chr1_3:35806799-35806818 Msa0116700:CDS 45.0%
AGAAAAATGGGCGACAAAGG+AGG - chr1_3:35806802-35806821 Msa0116700:CDS 45.0%
GAAAAATGGGCGACAAAGGA+GGG - chr1_3:35806803-35806822 Msa0116700:CDS 45.0%
TCCGATATGTACCGAAGAGA+TGG - chr1_3:35806834-35806853 Msa0116700:CDS 45.0%
ATCAGTCAGGTCCATCTCTT+CGG + chr1_3:35806848-35806867 None:intergenic 45.0%
ACCTCATAGCCACATTTGCA+CGG + chr1_3:35806883-35806902 None:intergenic 45.0%
CACAGATCTGTGTATGGTGT+TGG - chr1_3:35807283-35807302 Msa0116700:CDS 45.0%
GCTCATAAGGATGAAACCGA+GGG - chr1_3:35807324-35807343 Msa0116700:intron 45.0%
TTTGTCATAAGGTGAACGGC+AGG + chr1_3:35807361-35807380 None:intergenic 45.0%
CAAAGAACGCATTGTGGCAA+TGG - chr1_3:35807377-35807396 Msa0116700:intron 45.0%
CTTGCCTTGCTTTAGCAGAT+TGG - chr1_3:35807483-35807502 Msa0116700:CDS 45.0%
GCAACCAATCTGCTAAAGCA+AGG + chr1_3:35807490-35807509 None:intergenic 45.0%
CGCAACCTCGTGTACATAAT+TGG - chr1_3:35807598-35807617 Msa0116700:intron 45.0%
GCAGTCCAATTATGTACACG+AGG + chr1_3:35807606-35807625 None:intergenic 45.0%
TCTTCATCTGCAAGGTGAAG+AGG + chr1_3:35807628-35807647 None:intergenic 45.0%
GTAACTGTGTGGAGCATGAA+AGG - chr1_3:35807691-35807710 Msa0116700:intron 45.0%
!! CTTCAACGTAGGGAGTACTT+TGG - chr1_3:35807809-35807828 Msa0116700:intron 45.0%
!! AACGTAGGGAGTACTTTGGA+AGG - chr1_3:35807813-35807832 Msa0116700:intron 45.0%
!! AGGGAGTACTTTGGAAGGTA+TGG - chr1_3:35807818-35807837 Msa0116700:intron 45.0%
GTCGATATCTCGTACAGCAA+CGG - chr1_3:35807856-35807875 Msa0116700:intron 45.0%
TCGATATCTCGTACAGCAAC+GGG - chr1_3:35807857-35807876 Msa0116700:intron 45.0%
CAACGAATGCAAAACAGCCA+AGG + chr1_3:35808051-35808070 None:intergenic 45.0%
! TGATTGGGTTGTTACTTGCG+AGG - chr1_3:35808193-35808212 Msa0116700:intron 45.0%
!!! CGTGATTTTGTGATGATGGG+TGG - chr1_3:35808220-35808239 Msa0116700:intron 45.0%
TCATGCATGGCTCAGAAATG+TGG - chr1_3:35808286-35808305 Msa0116700:intron 45.0%
!! ATTTTGGCACTGCTTCCTAC+TGG + chr1_3:35808448-35808467 None:intergenic 45.0%
AGTCGGTAAAGCAGAGTGAA+GGG + chr1_3:35808532-35808551 None:intergenic 45.0%
AAGTCGGTAAAGCAGAGTGA+AGG + chr1_3:35808533-35808552 None:intergenic 45.0%
!! ACTCTGCTTTACCGACTTGT+AGG - chr1_3:35808535-35808554 Msa0116700:intron 45.0%
ACAAAAAGGGAATCCAGGCT+GGG + chr1_3:35808632-35808651 None:intergenic 45.0%
GTTCAGGCGACAACACAAAA+AGG + chr1_3:35808646-35808665 None:intergenic 45.0%
TACGCCTAGTGATGTACGTA+AGG + chr1_3:35808682-35808701 None:intergenic 45.0%
GTACATCACTAGGCGTATCT+TGG - chr1_3:35808685-35808704 Msa0116700:intron 45.0%
GATACAGCGGAAAGGAAAAC+AGG + chr1_3:35808751-35808770 None:intergenic 45.0%
GGTCAAAAGACAACTAGCTG+AGG + chr1_3:35809005-35809024 None:intergenic 45.0%
! TGTTTAGGATCATCTGGTGG+TGG + chr1_3:35809462-35809481 None:intergenic 45.0%
!! TGCAGGAAGTGCTGTTGAAT+TGG + chr1_3:35809711-35809730 None:intergenic 45.0%
! CAACCTAAAGCAGAAGCATG+CGG + chr1_3:35809865-35809884 None:intergenic 45.0%
TGTATCTGGCAGTCTTCCAA+AGG - chr1_3:35810003-35810022 Msa0116700:CDS 45.0%
AGTTCATCTTCATCACGTGC+TGG - chr1_3:35810031-35810050 Msa0116700:CDS 45.0%
! TTCATCACGTGCTGGTAATC+TGG - chr1_3:35810039-35810058 Msa0116700:CDS 45.0%
AACTTATTCAGCAGCTTCCG+TGG - chr1_3:35810315-35810334 Msa0116700:intron 45.0%
ACTTATTCAGCAGCTTCCGT+GGG - chr1_3:35810316-35810335 Msa0116700:intron 45.0%
! GTGCAACCTTTTCTTGACCA+AGG + chr1_3:35810342-35810361 None:intergenic 45.0%
AGGAAGCTTGTACTCACAGA+AGG + chr1_3:35810364-35810383 None:intergenic 45.0%
TTCTGTGAGTACAAGCTTCC+TGG - chr1_3:35810363-35810382 Msa0116700:intron 45.0%
GTTTCAAATCGGGATGTGCA+TGG - chr1_3:35810424-35810443 Msa0116700:intron 45.0%
AAAGAGGAATCGGTCGAGTT+AGG + chr1_3:35810538-35810557 None:intergenic 45.0%
! AACTCGACCGATTCCTCTTT+AGG - chr1_3:35810538-35810557 Msa0116700:intron 45.0%
! ACTCGACCGATTCCTCTTTA+GGG - chr1_3:35810539-35810558 Msa0116700:intron 45.0%
! ATTCAACCACACCAGCCTTT+TGG - chr1_3:35810599-35810618 Msa0116700:intron 45.0%
! TTCAACCACACCAGCCTTTT+GGG - chr1_3:35810600-35810619 Msa0116700:intron 45.0%
GACTGTGATCAACAACAACC+CGG - chr1_3:35810655-35810674 Msa0116700:intron 45.0%
AAATTATCGCTGCCTTTGCC+GGG + chr1_3:35810676-35810695 None:intergenic 45.0%
ATGAGGTGAATAATGCCTGG+AGG + chr1_3:35810701-35810720 None:intergenic 45.0%
! GCTTCAGATGATGGCTTGAT+TGG + chr1_3:35810741-35810760 None:intergenic 45.0%
! ATCAAGCCATCATCTGAAGC+AGG - chr1_3:35810741-35810760 Msa0116700:CDS 45.0%
AAGGCTTCCCTGAATGATTC+TGG + chr1_3:35810783-35810802 None:intergenic 45.0%
!! GGTGCTTTGAAGGATGTGTA+TGG + chr1_3:35810994-35811013 None:intergenic 45.0%
! TCTTGGATTTTGCGCAAAGC+AGG + chr1_3:35811015-35811034 None:intergenic 45.0%
TTGTCTGGCAAAGGAAAACC+TGG + chr1_3:35811049-35811068 None:intergenic 45.0%
GTTGCTGGACATGATCCTAA+AGG - chr1_3:35811114-35811133 Msa0116700:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr1_3:35812179-35812198 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr1_3:35812202-35812221 Msa0116700:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr1_3:35812212-35812231 Msa0116700:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_3:35812358-35812377 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_3:35812359-35812378 None:intergenic 45.0%
ATGTCAGACAGAATACCACC+TGG - chr1_3:35812705-35812724 Msa0116700:intron 45.0%
TGTCAGACAGAATACCACCT+GGG - chr1_3:35812706-35812725 Msa0116700:intron 45.0%
TGTGGCTGCAAATGTTCAAC+TGG + chr1_3:35812891-35812910 None:intergenic 45.0%
AAGGTTTGCCCCAGGTTAAA+AGG + chr1_3:35813023-35813042 None:intergenic 45.0%
GCGACTGAATTGAGGAAGTA+AGG + chr1_3:35813042-35813061 None:intergenic 45.0%
CAAATAACCAGTGGGGAAGT+TGG - chr1_3:35813270-35813289 Msa0116700:intron 45.0%
AATCATTCCAACTTCCCCAC+TGG + chr1_3:35813280-35813299 None:intergenic 45.0%
TGCACTAATAGGCTCTCAGA+TGG - chr1_3:35813470-35813489 Msa0116700:intron 45.0%
GATTGCCGTTGACCATTTGA+TGG + chr1_3:35813636-35813655 None:intergenic 45.0%
TAAGCAAACAAGAGTGGGTG+AGG + chr1_3:35813658-35813677 None:intergenic 45.0%
GTCTGACAACCGTAATGCAT+AGG + chr1_3:35813710-35813729 None:intergenic 45.0%
ACCATAATAACCGCCAAGGT+CGG + chr1_3:35813783-35813802 None:intergenic 45.0%
ACTCACCATAATAACCGCCA+AGG + chr1_3:35813787-35813806 None:intergenic 45.0%
GAAGTTATAGGCCTTACTGG+TGG - chr1_3:35814056-35814075 Msa0116700:intron 45.0%
GCATGAATTTCCCACCAGTA+AGG + chr1_3:35814070-35814089 None:intergenic 45.0%
GCTTCAGATGCTGATCAGTC+AGG + chr1_3:35806861-35806880 None:intergenic 50.0%
! CATCTGAAGCCGTGCAAATG+TGG - chr1_3:35806871-35806890 Msa0116700:CDS 50.0%
GGCTCATAAGGATGAAACCG+AGG - chr1_3:35807323-35807342 Msa0116700:intron 50.0%
CAATGGCAGCTAACTGTCGA+AGG - chr1_3:35807394-35807413 Msa0116700:intron 50.0%
GTCGAAGGTTGAGTTATGGC+TGG - chr1_3:35807409-35807428 Msa0116700:intron 50.0%
TCCACCAGCTACTTCAACGT+AGG - chr1_3:35807798-35807817 Msa0116700:intron 50.0%
CCACCAGCTACTTCAACGTA+GGG - chr1_3:35807799-35807818 Msa0116700:intron 50.0%
ACTCCCTACGTTGAAGTAGC+TGG + chr1_3:35807805-35807824 None:intergenic 50.0%
AAAAAGGGAATCCAGGCTGG+GGG + chr1_3:35808630-35808649 None:intergenic 50.0%
CAAAAAGGGAATCCAGGCTG+GGG + chr1_3:35808631-35808650 None:intergenic 50.0%
CACAAAAAGGGAATCCAGGC+TGG + chr1_3:35808633-35808652 None:intergenic 50.0%
AGTCTCTATTGCTGCAAGGC+TGG + chr1_3:35808830-35808849 None:intergenic 50.0%
GGAGGTAAAACACTCCCTGA+AGG + chr1_3:35809441-35809460 None:intergenic 50.0%
!! TTAGGATCATCTGGTGGTGG+AGG + chr1_3:35809459-35809478 None:intergenic 50.0%
CATTACCAAGAGTTGGCTGC+AGG + chr1_3:35809728-35809747 None:intergenic 50.0%
CTGCAGCCAACTCTTGGTAA+TGG - chr1_3:35809726-35809745 Msa0116700:CDS 50.0%
!!! CAGTACGGCTGCTGTTTTCA+TGG - chr1_3:35809793-35809812 Msa0116700:CDS 50.0%
!!! TACGGCTGCTGTTTTCATGG+TGG - chr1_3:35809796-35809815 Msa0116700:CDS 50.0%
TAGCCGCATGCTTCTGCTTT+AGG - chr1_3:35809859-35809878 Msa0116700:CDS 50.0%
ACTAGGGCAAGGTGTGTATC+TGG - chr1_3:35809989-35810008 Msa0116700:CDS 50.0%
! ATTGATTCCCAAACCCTGCC+AGG - chr1_3:35810085-35810104 Msa0116700:CDS 50.0%
TTGATTCCCAAACCCTGCCA+GGG - chr1_3:35810086-35810105 Msa0116700:CDS 50.0%
! CTTTTCTTGACCAAGGCCCA+CGG + chr1_3:35810335-35810354 None:intergenic 50.0%
GGATGTGCATGGCTCATGTT+CGG - chr1_3:35810435-35810454 Msa0116700:intron 50.0%
ATCTTCCCAAAAGGCTGGTG+TGG + chr1_3:35810608-35810627 None:intergenic 50.0%
GATCAACAACAACCCGGCAA+AGG - chr1_3:35810661-35810680 Msa0116700:intron 50.0%
GCAGCGATAATTTAGCCTCC+AGG - chr1_3:35810683-35810702 Msa0116700:CDS 50.0%
TTCTCTAATCCTGCCCCCAA+GGG + chr1_3:35810823-35810842 None:intergenic 50.0%
AGAGAAGACCGTGAAGAGTG+AGG - chr1_3:35810837-35810856 Msa0116700:intron 50.0%
GAGAAGACCGTGAAGAGTGA+GGG - chr1_3:35810838-35810857 Msa0116700:intron 50.0%
ACCAGTACCCTCACTCTTCA+CGG + chr1_3:35810848-35810867 None:intergenic 50.0%
! CAGCAATCATTTGGGGTTGC+TGG - chr1_3:35811099-35811118 Msa0116700:intron 50.0%
GCAGGATGCCACAAGAAAAC+TGG + chr1_3:35811457-35811476 None:intergenic 50.0%
AGGTTGGCACTGTACAGTTG+AGG + chr1_3:35812011-35812030 None:intergenic 50.0%
ACTAAGTGGGGTAGGCTACA+TGG + chr1_3:35812346-35812365 None:intergenic 50.0%
ATGTAGCCTACCCCACTTAG+TGG - chr1_3:35812345-35812364 Msa0116700:CDS 50.0%
TGTAGCCTACCCCACTTAGT+GGG - chr1_3:35812346-35812365 Msa0116700:CDS 50.0%
CTTATCCCACTAAGTGGGGT+AGG + chr1_3:35812354-35812373 None:intergenic 50.0%
CTACCCCACTTAGTGGGATA+AGG - chr1_3:35812352-35812371 Msa0116700:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_3:35812360-35812379 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_3:35812357-35812376 Msa0116700:CDS 50.0%
CTCATGCTTCAAGTCCACCT+GGG - chr1_3:35812676-35812695 Msa0116700:intron 50.0%
TCTGACATTGCAAACCCAGG+TGG + chr1_3:35812693-35812712 None:intergenic 50.0%
CTGTCTGACATTGCAAACCC+AGG + chr1_3:35812696-35812715 None:intergenic 50.0%
! ATACCACCTGGGTTTTCTCG+CGG - chr1_3:35812717-35812736 Msa0116700:intron 50.0%
! ACAGATGGAGGAGCATACTG+TGG + chr1_3:35812909-35812928 None:intergenic 50.0%
TGACCCTAGTAGGGGAATAG+TGG - chr1_3:35812977-35812996 Msa0116700:intron 50.0%
CCTCCACTATTCCCCTACTA+GGG + chr1_3:35812983-35813002 None:intergenic 50.0%
TCCTCCACTATTCCCCTACT+AGG + chr1_3:35812984-35813003 None:intergenic 50.0%
! GTAGGGGAATAGTGGAGGAA+AGG - chr1_3:35812985-35813004 Msa0116700:intron 50.0%
GCTGAAATTGTGTGGCAGTC+TGG - chr1_3:35813543-35813562 Msa0116700:intron 50.0%
TTAGCTTCACTGCCAAGCAC+TGG - chr1_3:35813675-35813694 Msa0116700:intron 50.0%
!! ACTGCCAAGCACTGGAATCT+GGG - chr1_3:35813683-35813702 Msa0116700:intron 50.0%
! CAAGTGGATTTCGCAAGTGC+TGG + chr1_3:35813875-35813894 None:intergenic 50.0%
TGAGAGCGGAGAAGAGAGAG+TGG + chr1_3:35805971-35805990 None:intergenic 55.0%
GCCGTGCAAATGTGGCTATG+AGG - chr1_3:35806879-35806898 Msa0116700:CDS 55.0%
TCATAAGGTGAACGGCAGGC+AGG + chr1_3:35807357-35807376 None:intergenic 55.0%
CCCTACGTTGAAGTAGCTGG+TGG + chr1_3:35807802-35807821 None:intergenic 55.0%
GGCAGCTCCATTGCTTGAAC+CGG + chr1_3:35809690-35809709 None:intergenic 55.0%
CACTTCCTGCAGCCAACTCT+TGG - chr1_3:35809720-35809739 Msa0116700:CDS 55.0%
TGATTCCCAAACCCTGCCAG+GGG - chr1_3:35810087-35810106 Msa0116700:CDS 55.0%
CGTGGGCCTTGGTCAAGAAA+AGG - chr1_3:35810333-35810352 Msa0116700:intron 55.0%
TTTACTGAACCCTTGGGGGC+AGG - chr1_3:35810811-35810830 Msa0116700:intron 55.0%
CTTCTCTAATCCTGCCCCCA+AGG + chr1_3:35810824-35810843 None:intergenic 55.0%
! ACCGTGAAGAGTGAGGGTAC+TGG - chr1_3:35810844-35810863 Msa0116700:intron 55.0%
GCGCAAAGCAGGTGCTTTGA+AGG + chr1_3:35811004-35811023 None:intergenic 55.0%
GCTCATGCTTCAAGTCCACC+TGG - chr1_3:35812675-35812694 Msa0116700:CDS 55.0%
! TACCACCTGGGTTTTCTCGC+GGG - chr1_3:35812718-35812737 Msa0116700:intron 55.0%
CCCTAGTAGGGGAATAGTGG+AGG - chr1_3:35812980-35812999 Msa0116700:intron 55.0%
GAGGAAGTAAGGTTTGCCCC+AGG + chr1_3:35813031-35813050 None:intergenic 55.0%
!! CACTGCCAAGCACTGGAATC+TGG - chr1_3:35813682-35813701 Msa0116700:intron 55.0%
AGGACCCAGATTCCAGTGCT+TGG + chr1_3:35813690-35813709 None:intergenic 55.0%
AATGTCAGGAGAGCCGACCT+TGG - chr1_3:35813767-35813786 Msa0116700:intron 55.0%
GCCGACCTTGGCGGTTATTA+TGG - chr1_3:35813779-35813798 Msa0116700:intron 55.0%
CGGAGAAGAGAGAGTGGTGG+TGG + chr1_3:35805965-35805984 None:intergenic 60.0%
GAGCGGAGAAGAGAGAGTGG+TGG + chr1_3:35805968-35805987 None:intergenic 60.0%
GTGAACGGCAGGCAGGACAA+CGG + chr1_3:35807350-35807369 None:intergenic 60.0%
CATGTGGTGCGGTGATCTCC+AGG + chr1_3:35810384-35810403 None:intergenic 60.0%
ACTCTCCCGCGAGAAAACCC+AGG + chr1_3:35812726-35812745 None:intergenic 60.0%
GGCTCTCAGATGGCAGTGTG+TGG - chr1_3:35813480-35813499 Msa0116700:intron 60.0%
GGTCAACTATGCCCCCAGCC+TGG - chr1_3:35808616-35808635 Msa0116700:intron 65.0%
AGCAGCCCCTGGCAGGGTTT+GGG + chr1_3:35810095-35810114 None:intergenic 65.0%
AAGCAGCCCCTGGCAGGGTT+TGG + chr1_3:35810096-35810115 None:intergenic 65.0%
! CTTTCGGTGCAAGCAGCCCC+TGG + chr1_3:35810106-35810125 None:intergenic 65.0%
CAGGGGCTGCTTGCACCGAA+AGG - chr1_3:35810104-35810123 Msa0116700:CDS 65.0%
TCAGCAGCTTCCGTGGGCCT+TGG - chr1_3:35810322-35810341 Msa0116700:intron 65.0%
CTCCCGCGAGAAAACCCAGG+TGG + chr1_3:35812723-35812742 None:intergenic 65.0%
GTCAGGAGAGCCGACCTTGG+CGG - chr1_3:35813770-35813789 Msa0116700:intron 65.0%
GCAGGCAGGACAACGGCCCT+CGG + chr1_3:35807343-35807362 None:intergenic 70.0%
GGTGCAAGCAGCCCCTGGCA+GGG + chr1_3:35810101-35810120 None:intergenic 70.0%
CGGTGCAAGCAGCCCCTGGC+AGG + chr1_3:35810102-35810121 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 35805879 35814316 35805879 ID=Msa0116700;Name=Msa0116700
chr1_3 mRNA 35805879 35814316 35805879 ID=Msa0116700-mRNA-1;Parent=Msa0116700;Name=Msa0116700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=133|0.84|0.85|1|0.69|0.64|14|701|931
chr1_3 exon 35805879 35806188 35805879 ID=Msa0116700-mRNA-1:exon:11625;Parent=Msa0116700-mRNA-1
chr1_3 exon 35806395 35807303 35806395 ID=Msa0116700-mRNA-1:exon:11624;Parent=Msa0116700-mRNA-1
chr1_3 exon 35807427 35807528 35807427 ID=Msa0116700-mRNA-1:exon:11623;Parent=Msa0116700-mRNA-1
chr1_3 exon 35808922 35810201 35808922 ID=Msa0116700-mRNA-1:exon:11622;Parent=Msa0116700-mRNA-1
chr1_3 exon 35810454 35810524 35810454 ID=Msa0116700-mRNA-1:exon:11621;Parent=Msa0116700-mRNA-1
chr1_3 exon 35810671 35810803 35810671 ID=Msa0116700-mRNA-1:exon:11620;Parent=Msa0116700-mRNA-1
chr1_3 exon 35811713 35811792 35811713 ID=Msa0116700-mRNA-1:exon:11619;Parent=Msa0116700-mRNA-1
chr1_3 exon 35811888 35811936 35811888 ID=Msa0116700-mRNA-1:exon:11618;Parent=Msa0116700-mRNA-1
chr1_3 exon 35812020 35812103 35812020 ID=Msa0116700-mRNA-1:exon:11617;Parent=Msa0116700-mRNA-1
chr1_3 exon 35812280 35812389 35812280 ID=Msa0116700-mRNA-1:exon:11616;Parent=Msa0116700-mRNA-1
chr1_3 exon 35812547 35812694 35812547 ID=Msa0116700-mRNA-1:exon:11615;Parent=Msa0116700-mRNA-1
chr1_3 exon 35812780 35812907 35812780 ID=Msa0116700-mRNA-1:exon:11614;Parent=Msa0116700-mRNA-1
chr1_3 exon 35813295 35813406 35813295 ID=Msa0116700-mRNA-1:exon:11613;Parent=Msa0116700-mRNA-1
chr1_3 exon 35814203 35814316 35814203 ID=Msa0116700-mRNA-1:exon:11612;Parent=Msa0116700-mRNA-1
chr1_3 five_prime_UTR 35814203 35814316 35814203 ID=Msa0116700-mRNA-1:five_prime_utr;Parent=Msa0116700-mRNA-1
chr1_3 five_prime_UTR 35813388 35813406 35813388 ID=Msa0116700-mRNA-1:five_prime_utr;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35813295 35813387 35813295 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35812780 35812907 35812780 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35812547 35812694 35812547 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35812280 35812389 35812280 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35812020 35812103 35812020 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35811888 35811936 35811888 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35811713 35811792 35811713 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35810671 35810803 35810671 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35810454 35810524 35810454 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35808922 35810201 35808922 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35807427 35807528 35807427 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 CDS 35806786 35807303 35806786 ID=Msa0116700-mRNA-1:cds;Parent=Msa0116700-mRNA-1
chr1_3 three_prime_UTR 35806395 35806785 35806395 ID=Msa0116700-mRNA-1:three_prime_utr;Parent=Msa0116700-mRNA-1
chr1_3 three_prime_UTR 35805879 35806188 35805879 ID=Msa0116700-mRNA-1:three_prime_utr;Parent=Msa0116700-mRNA-1
Gene Sequence

>Msa0116700

ATGGGCGACAAAGGAGGGAAATCATGTCCGATATGTACCGAAGAGATGGACCTGACTGATCAGCATCTGAAGCCGTGCAAATGTGGCTATGAGATCTGTGTATGGTGTTGGCATCATATAATGGAAATGGCTCATAAGGATGAAACCGAGGGCCGTTGTCCTGCCTGCCGTTCACCTTATGACAAAGAACGCATTGTGGCAATGGCAGCTAACTGTCGAAGATTGGTTGCTGAAATGAATTCTAAAAAGAAAATACAGAAGTTAAAGCCTAAATCATCAGATGGAAGGAAACATCTTACTGATGTTAGAGTCATTCAGCGCAACCTCGTGTACATAATTGGACTGCCTCTTCACCTTGCAGATGAAGATCTACTTCAACGTAGGGAGTACTTTGGAAGGTATGGAAAGGTTTTGAAAGTGTCGATATCTCGTACAGCAACGGGCGTTATTCAACATTCTGCAAACAACATTTGCTGTGTGTATATAACGTACTCAAAAGAATCTGAAGCAGTTCGATGTATTCAATCAGTTCATTTTTTTGTACTAGAAGGTAGATCATTGAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCATGGCTCAGAAATGTGAATGGGTATATCTATAGTATTATTCCGGAAATAATTCTGGTACCAGTAGGAAGCAGTGCCAAAATCGTAGATTTACAAGAGAGTAGGGTCCTACAAATCATTGGTGCTACAAATAATTTGAATCGTCCTTCAGGGAGTGTTTTACCTCCACCACCAGATGATCCTAAACATGTATCATCAGCCACCAAAGTAGTGTCCAAAAGTTCTTTAGATAACCAGATTAAAGAATCCGGTTCAAGCAATGGAGCTGCCAATTCAACAGCACTTCCTGCAGCCAACTCTTGGGCAAGGTGTGTATCTGGCAGTCTTCCAAAGGATACTAGTTCATCTTCATCACGTGCTGGTAATCTGGTCAATAGAAAGATTGAAGCATCTATTGATTCCCAAACCCTGCCAGGGGCTGCTTGCACCGAAAGGTCTATTCTTGATACAAAAAAATCAGGGGAAGTTAAAGACAGCTCTGACGTGCATTCCACCAATAGTGTATCTGTACCTTCAGAGTTGAACAAACATCACATTGGTGGAAATTTTCAAACATGTGAGTCAATTGTTATCAATGAGGTTACTGTGACGAAACTTTCTGGCATTATTTTGTCTAACTGTGAAACTTATTCAGCAGCTTCCGTGGGCCTTGGTCAAGAAAAGGTTGCACCTTCTGTGAGTACAAGCTTCCTGGAGATCACCGCACCACATGATTTGAATACTAACAAGGCAGTTTCAAATCGGGATGTGCATGGCTCATGTTCGGAGTTATCATCTGTTAGCATCAACAGTCATCTTGAAGATTCATATTTCACTCGGGATTCGGACAGAATACTTTTTACTCCTAACTCGACCGATTCCTCTTTAGGGAAGCATTTGCATCAAGATAATGAGTATTGTAAAGATCATTCAACCACACCAGCCTTTTGGGAAGATATAATTGTGGATGATATGCTAAACAAAGACTGTGATCAACAACAACCCGGCAAAGGCAGCGATAATTTAGCCTCCAGGCATTATTCACCTCATTGTGCTCAGAATCTAAGCCAATCAAGCCATCATCTGAAGCAGGAAAATCAAATTCGTAACCAGAATCATTCAGGGAAGCCTTCTGAATATTTTACTGAACCCTTGGGGGCAGGATTAGAGAAGACCGTGAAGAGTGAGGGTACTGGTTCAGATGTTGATAACAAGGTTTCTTCAGACGTCGGCGAAAACAACATTATATCTAACATTTTGTCTTTGGAACTAGATGCATGGGAAGATTCAATAGTTAAGTTGTTGGATGAAAGTGATGAGCCATACACATCCTTCAAAGCACCTGCTTTGCGCAAAATCCAAGACAATAATCAGTCCAGGTTTTCCTTTGCCAGACAAAATGATTCCTTGAATAAAACCTCTGATTTGCAGCAATCATTTGGGGTTGCTGGACATGATCCTAAAGGGAATTATGCATCTGGTGGTTGTAATGGAAACAAAGACATGTTCGCTGTGAAACACCCATACACTTTCCCATCAAGCAATTCTGTGCTATCGGATAAATTTGATGGAAGTCTGTCTTTGGCGCCCTCTAAATTTTCCATGGCAAAAGCTCATGCTTCAAGTCCACCTGGGTTTGCAATGTCAGACAGAATACCACCTGGGTTTTCTCGCGGGAGAGTAGAACAGAGTTGTAATAGTTCTGTTGAACATTTGCAGCCACAGTATGCTCCTCCATCTGTAAATATCAGCAGGATAGGAAATGTTGAGTTCAAGAATCCTATGGTATTTGACCCTAGTAGGGGAATAGTGGAGGAAAGGCTGAATAGTACACCTTTTAACCTGGGGCAAACCTTACTTCCTCAATTCAGTCGCAATGAAGATGATGCTAGACTTAAGCTGTTAATACAACAACAATCTACAGCTTTGCAGAATTCAAGACTTTCAGATCATATTGGAAATAGGTTTTCACCTCAAAGTGATGCTTATAGAACTAATTCGAGGTTTCTCGATCAATTTCAGTCTAACACACCATTTTCTGAACAACTGCATTCTCAACAGTTCAGTAGTAATATTCTTGGTTCAAATAACCAGTGGGGAAGTTGGAATGATTCCAATTATTTCAGTGGCCTGTCTATGTCTGAAGTATTGAATAATGAAATAGGGGGATTCAACAATTTCATGCCTAGTTATGAGAATATCAAGTTTAAGCACCTGAATTGA
Protein sequence

>Msa0116700

MGDKGGKSCPICTEEMDLTDQHLKPCKCGYEICVWCWHHIMEMAHKDETEGRCPACRSPYDKERIVAMAANCRRLVAEMNSKKKIQKLKPKSSDGRKHLTDVRVIQRNLVYIIGLPLHLADEDLLQRREYFGRYGKVLKVSISRTATGVIQHSANNICCVYITYSKESEAVRCIQSVHFFVLEGRSLRACFGTTKYCHAWLRNVNGYIYSIIPEIILVPVGSSAKIVDLQESRVLQIIGATNNLNRPSGSVLPPPPDDPKHVSSATKVVSKSSLDNQIKESGSSNGAANSTALPAANSWARCVSGSLPKDTSSSSSRAGNLVNRKIEASIDSQTLPGAACTERSILDTKKSGEVKDSSDVHSTNSVSVPSELNKHHIGGNFQTCESIVINEVTVTKLSGIILSNCETYSAASVGLGQEKVAPSVSTSFLEITAPHDLNTNKAVSNRDVHGSCSELSSVSINSHLEDSYFTRDSDRILFTPNSTDSSLGKHLHQDNEYCKDHSTTPAFWEDIIVDDMLNKDCDQQQPGKGSDNLASRHYSPHCAQNLSQSSHHLKQENQIRNQNHSGKPSEYFTEPLGAGLEKTVKSEGTGSDVDNKVSSDVGENNIISNILSLELDAWEDSIVKLLDESDEPYTSFKAPALRKIQDNNQSRFSFARQNDSLNKTSDLQQSFGVAGHDPKGNYASGGCNGNKDMFAVKHPYTFPSSNSVLSDKFDGSLSLAPSKFSMAKAHASSPPGFAMSDRIPPGFSRGRVEQSCNSSVEHLQPQYAPPSVNISRIGNVEFKNPMVFDPSRGIVEERLNSTPFNLGQTLLPQFSRNEDDARLKLLIQQQSTALQNSRLSDHIGNRFSPQSDAYRTNSRFLDQFQSNTPFSEQLHSQQFSSNILGSNNQWGSWNDSNYFSGLSMSEVLNNEIGGFNNFMPSYENIKFKHLN*