AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116610 MtrunA17_Chr1g0181751 91.123 935 52 2 1 931 1 908 0.0 1709
Msa0116610 MtrunA17_Chr4g0030181 61.342 313 103 7 1 300 1 308 4.69e-118 385
Msa0116610 MtrunA17_Chr4g0030181 37.398 369 196 16 588 931 674 1032 9.16e-46 178
Msa0116610 MtrunA17_Chr2g0325921 66.192 281 84 3 1 273 1 278 2.86e-114 374
Msa0116610 MtrunA17_Chr2g0325921 34.349 361 208 14 592 931 643 995 1.14e-36 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116610 AT5G60170.2 34.604 1023 524 36 1 928 1 973 4.58e-139 440
Msa0116610 AT5G60170.1 34.574 1021 525 36 1 928 1 971 8.73e-139 439
Msa0116610 AT3G45630.2 62.136 309 105 4 1 300 1 306 1.76e-118 385
Msa0116610 AT3G45630.2 30.749 387 221 16 572 928 606 975 8.27e-31 131
Msa0116610 AT3G45630.1 62.136 309 105 4 1 300 1 306 1.76e-118 385
Msa0116610 AT3G45630.1 30.749 387 221 16 572 928 606 975 8.27e-31 131
Msa0116610 AT2G28540.1 55.556 324 128 6 1 313 1 319 1.34e-112 367
Msa0116610 AT2G28540.2 55.556 324 128 6 1 313 1 319 7.08e-112 367
Msa0116610 AT5G62910.1 43.333 60 28 1 8 67 251 304 1.27e-11 67.4
Msa0116610 AT5G62910.2 43.333 60 28 1 8 67 251 304 1.27e-11 67.4
Msa0116610 AT3G48070.1 44.828 58 26 1 8 65 243 294 2.51e-11 66.6
Msa0116610 AT3G48070.2 44.828 58 26 1 8 65 243 294 4.12e-11 66.2
Msa0116610 AT1G74870.1 49.180 61 24 2 2 62 206 259 4.91e-11 65.1
Msa0116610 AT3G48070.3 44.828 58 26 1 8 65 194 245 5.56e-11 65.1

Find 264 sgRNAs with CRISPR-Local

Find 567 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATTGTGACAGAATTTC+AGG 0.180494 1_3:+35675279 None:intergenic
CTCTTGTAAATCTACGATTT+TGG 0.193487 1_3:+35680421 None:intergenic
GATATATATTAAACTCTATT+TGG 0.214080 1_3:+35674618 None:intergenic
CGCAACCTCGTGTACATAAT+TGG 0.216432 1_3:-35681284 Msa0116610:CDS
GTTACTGTGACGAAACTTTC+TGG 0.228390 1_3:-35678611 Msa0116610:CDS
ACTTACATCTAAAGAACTTT+TGG 0.233420 1_3:+35679374 None:intergenic
TTCATTTGCAGGGCTTGTTT+TGG 0.243269 1_3:-35680634 Msa0116610:intron
AACTCGACCGATTCCTCTTT+AGG 0.255910 1_3:-35678344 Msa0116610:CDS
AATTCTGAACAAACAATTTC+AGG 0.260991 1_3:+35674754 None:intergenic
CAGCAATCATTTGGGGTTGC+TGG 0.261328 1_3:-35677783 Msa0116610:CDS
TTTCAGATCATATTGGAAAT+AGG 0.261331 1_3:-35675760 Msa0116610:CDS
CACTGCCAAGCACTGGAATC+TGG 0.262289 1_3:-35675207 Msa0116610:three_prime_UTR
GAAGTATTGAATAATGAAAT+AGG 0.264396 1_3:-35675560 Msa0116610:CDS
CTGATTTGCAGCAATCATTT+GGG 0.265234 1_3:-35677791 Msa0116610:CDS
AGACAGGCCACTGAAATAAT+TGG 0.270957 1_3:+35675589 None:intergenic
AATAATTTGAATCGTCCTTC+AGG 0.272128 1_3:-35679459 Msa0116610:CDS
TTTCCCTTCAATGCACTAAT+AGG 0.272870 1_3:-35675430 Msa0116610:three_prime_UTR
GCCGACCTTGGCGGTTATTA+TGG 0.274091 1_3:-35675110 Msa0116610:intron
GAAACTACAATCGAAGTTAT+AGG 0.282433 1_3:-35674845 Msa0116610:three_prime_UTR
TAAATTATCGCTGCCTTTGC+CGG 0.284152 1_3:+35678208 None:intergenic
ATTAGTTGTTCAGTCAATTC+AGG 0.284421 1_3:+35675489 None:intergenic
GCTTCAGATGATGGCTTGAT+TGG 0.295084 1_3:+35678144 None:intergenic
ATTCGTAACCAGAATCATTC+AGG 0.298934 1_3:-35678110 Msa0116610:CDS
ATTCAACCACACCAGCCTTT+TGG 0.298993 1_3:-35678283 Msa0116610:CDS
TATTATTCCGGAAATAATTC+TGG 0.308692 1_3:-35680462 Msa0116610:CDS
AAGCAGCCCCTGGCAGGGTT+TGG 0.311969 1_3:+35678789 None:intergenic
AAGGCTTCCCTGAATGATTC+TGG 0.318324 1_3:+35678102 None:intergenic
CGGTGCAAGCAGCCCCTGGC+AGG 0.321354 1_3:+35678783 None:intergenic
CAGTTCAGTAGTAATATTCT+TGG 0.321542 1_3:-35675644 Msa0116610:CDS
CCAGATGCATAATTCCCTTT+AGG 0.322792 1_3:+35677753 None:intergenic
ACTGGTACCAGAATTATTTC+CGG 0.324456 1_3:+35680455 None:intergenic
TCAAGACTTTCAGATCATAT+TGG 0.327796 1_3:-35675767 Msa0116610:CDS
TTCTGTGAGTACAAGCTTCC+TGG 0.329107 1_3:-35678519 Msa0116610:CDS
TCTGATTTGCAGCAATCATT+TGG 0.331891 1_3:-35677792 Msa0116610:CDS
AGACTTGTTTCAAATCTGTT+TGG 0.334593 1_3:-35675313 Msa0116610:three_prime_UTR
ACTCGACCGATTCCTCTTTA+GGG 0.334806 1_3:-35678343 Msa0116610:CDS
AGCAGCCCCTGGCAGGGTTT+GGG 0.337581 1_3:+35678790 None:intergenic
TTGTAGCACCAATGATTTGT+AGG 0.340037 1_3:+35679481 None:intergenic
GGCAGCTCCATTGCTTGAAC+CGG 0.342584 1_3:+35679195 None:intergenic
TTCATCACGTGCTGGTAATC+TGG 0.349908 1_3:-35678843 Msa0116610:CDS
ATCGAAGTTATAGGCCTTAC+TGG 0.351396 1_3:-35674836 Msa0116610:three_prime_UTR
ACCTGGACTGATTATTGTCT+TGG 0.354617 1_3:+35677853 None:intergenic
ATTTGATGGAAGTCTGTCTT+TGG 0.355483 1_3:-35677649 Msa0116610:CDS
GAATAACGGAATACCGAGTT+TGG 0.358182 1_3:+35674726 None:intergenic
AAGTATTGAATAATGAAATA+GGG 0.358868 1_3:-35675559 Msa0116610:CDS
AAGGTTTGCCCCAGGTTAAA+AGG 0.359911 1_3:+35675869 None:intergenic
CATGCTATGAATGGTGAAAT+AGG 0.361239 1_3:-35674804 Msa0116610:three_prime_UTR
GTGCTATCGGATAAATTTGA+TGG 0.365279 1_3:-35677663 Msa0116610:CDS
AAACTCACTGGAAAATTTAG+AGG 0.365826 1_3:+35677623 None:intergenic
GTTCTATAAGCATCACTTTG+AGG 0.368135 1_3:+35675731 None:intergenic
TGTATGTACAAAGTTAGTTT+TGG 0.371410 1_3:-35674665 Msa0116610:three_prime_UTR
ACTAGGGCAAGGTGTGTATC+TGG 0.372035 1_3:-35678893 Msa0116610:intron
GAATGCAGTTGTTCAGAAAA+TGG 0.376217 1_3:+35675671 None:intergenic
TTCATATTTCACTCGGGATT+CGG 0.378364 1_3:-35678387 Msa0116610:CDS
ACACAATTTCAGCCACATAA+AGG 0.380111 1_3:+35675356 None:intergenic
GAACAGAGTTGTAATAGTTC+TGG 0.383667 1_3:-35676142 Msa0116610:intron
TATAATGGAAATGGCTCATA+AGG 0.385777 1_3:-35681571 Msa0116610:CDS
TTCCTTCCATCTGATGATTT+AGG 0.390471 1_3:+35681335 None:intergenic
TTGAACCGGATTCTTTAATC+TGG 0.391628 1_3:+35679209 None:intergenic
GTGGCTGATGATACATGTTT+AGG 0.393495 1_3:+35679408 None:intergenic
AAAGAGGAATCGGTCGAGTT+AGG 0.394430 1_3:+35678347 None:intergenic
GCTGAAATTGTGTGGCAGTC+TGG 0.395484 1_3:-35675346 Msa0116610:three_prime_UTR
TCAGCAGCTTCCGTGGGCCT+TGG 0.396088 1_3:-35678560 Msa0116610:CDS
TCCTCCACTATTCCCCTACT+AGG 0.401309 1_3:+35675908 None:intergenic
GACTGAACAACTAATATTCA+TGG 0.407825 1_3:-35675481 Msa0116610:three_prime_UTR
GCGACTGAATTGAGGAAGTA+AGG 0.414883 1_3:+35675850 None:intergenic
GATTGCCGTTGACCATTTGA+TGG 0.426623 1_3:+35675256 None:intergenic
CTATGGTATTTGACCCTAGT+AGG 0.428418 1_3:-35675922 Msa0116610:CDS
TGTATCAAGAATAGACCTTT+CGG 0.429650 1_3:+35678763 None:intergenic
GAAGATGAACTAGTATCCTT+TGG 0.429995 1_3:+35678863 None:intergenic
GCGCAAAGCAGGTGCTTTGA+AGG 0.432491 1_3:+35677881 None:intergenic
GTATATCTATAGTATTATTC+CGG 0.435290 1_3:-35680474 Msa0116610:CDS
TGCAGGAAGTGCTGTTGAAT+TGG 0.437192 1_3:+35679174 None:intergenic
TCCATCTCTTCGGTACATAT+CGG 0.437890 1_3:+35682047 None:intergenic
TTACGGTTGTCAGACATAAC+TGG 0.438984 1_3:-35675174 Msa0116610:three_prime_UTR
ACAATGCGTTCTTTGTCATA+AGG 0.439574 1_3:+35681513 None:intergenic
CACAATTATATCTTCCCAAA+AGG 0.441190 1_3:+35678268 None:intergenic
TTGGCATCATATAATGGAAA+TGG 0.443228 1_3:-35681580 Msa0116610:CDS
CACAGATCTGTGTATGGTGT+TGG 0.443926 1_3:-35681599 Msa0116610:intron
AGATTCAATAGTTAAGTTGT+TGG 0.444149 1_3:-35677928 Msa0116610:CDS
CAAATAACCAGTGGGGAAGT+TGG 0.446372 1_3:-35675619 Msa0116610:CDS
ATTGATTCCCAAACCCTGCC+AGG 0.447448 1_3:-35678797 Msa0116610:CDS
ATCAGTCAGGTCCATCTCTT+CGG 0.447989 1_3:+35682037 None:intergenic
ACCAGTACCCTCACTCTTCA+CGG 0.451024 1_3:+35678037 None:intergenic
TCGATATCTCGTACAGCAAC+GGG 0.451883 1_3:-35681025 Msa0116610:CDS
CACTTCCTGCAGCCAACTCT+TGG 0.453295 1_3:-35679162 Msa0116610:intron
AGAGCCTATTAGTGCATTGA+AGG 0.454023 1_3:+35675426 None:intergenic
AAATTATCGCTGCCTTTGCC+GGG 0.458700 1_3:+35678209 None:intergenic
CACAATTTCAGCCACATAAA+GGG 0.460767 1_3:+35675357 None:intergenic
GATACATGTTTAGGATCATC+TGG 0.463183 1_3:+35679417 None:intergenic
TATGCATCTGGTGGTTGTAA+TGG 0.463874 1_3:-35677741 Msa0116610:CDS
CATGTGGTGCGGTGATCTCC+AGG 0.463912 1_3:+35678501 None:intergenic
CGTGGGCCTTGGTCAAGAAA+AGG 0.470197 1_3:-35678549 Msa0116610:CDS
AAGAACCAGATTAAAGAATC+CGG 0.476974 1_3:-35679214 Msa0116610:CDS
CTTTCGGTGCAAGCAGCCCC+TGG 0.477164 1_3:+35678779 None:intergenic
CCTAAAGGGAATTATGCATC+TGG 0.477224 1_3:-35677753 Msa0116610:CDS
TCAGAATTTGTTTCCAAACT+CGG 0.482425 1_3:-35674739 Msa0116610:three_prime_UTR
ACTGCCAAGCACTGGAATCT+GGG 0.485252 1_3:-35675206 Msa0116610:three_prime_UTR
GTCACAATTATGCCATCAAA+TGG 0.485642 1_3:-35675268 Msa0116610:three_prime_UTR
ATGCAAATGCTTCCCTAAAG+AGG 0.485653 1_3:+35678331 None:intergenic
CTCCATCTGTAAATATCAGC+AGG 0.487534 1_3:-35675970 Msa0116610:CDS
ATAATTTGAATCGTCCTTCA+GGG 0.488053 1_3:-35679458 Msa0116610:CDS
GTCTTTGGAACTAGATGCAT+GGG 0.488988 1_3:-35677952 Msa0116610:CDS
GCTTCAGATGCTGATCAGTC+AGG 0.491128 1_3:+35682024 None:intergenic
AGGGAGTACTTTGGAAGGTA+TGG 0.494301 1_3:-35681064 Msa0116610:CDS
ATGCTTCCCTAAAGAGGAAT+CGG 0.494776 1_3:+35678337 None:intergenic
GATAGCACAGAATTGCTTGA+TGG 0.494873 1_3:+35677678 None:intergenic
CAAAGAACGCATTGTGGCAA+TGG 0.497709 1_3:-35681505 Msa0116610:CDS
GGATGTGCATGGCTCATGTT+CGG 0.498770 1_3:-35678447 Msa0116610:CDS
TGACCCTAGTAGGGGAATAG+TGG 0.500098 1_3:-35675912 Msa0116610:CDS
CGGAGAAGAGAGAGTGGTGG+TGG 0.501583 1_3:+35682919 None:intergenic
TCAATACTTCAGACATAGAC+AGG 0.502092 1_3:+35675573 None:intergenic
TGAAGGTACAGATACACTAT+TGG 0.504841 1_3:+35678697 None:intergenic
TCTTCATTGCGACTGAATTG+AGG 0.507830 1_3:+35675842 None:intergenic
TTGTCTGGCAAAGGAAAACC+TGG 0.512658 1_3:+35677836 None:intergenic
ATCAAGCAATTCTGTGCTAT+CGG 0.515337 1_3:-35677676 Msa0116610:CDS
TCTGTAAATATCAGCAGGAT+AGG 0.517263 1_3:-35675965 Msa0116610:CDS
ATGCTTATAGAACTAATTCG+AGG 0.518286 1_3:-35675721 Msa0116610:CDS
TTGCTGGACATGATCCTAAA+GGG 0.518964 1_3:-35677767 Msa0116610:CDS
TGTTAAAAGATCCCTTTATG+TGG 0.522640 1_3:-35675368 Msa0116610:three_prime_UTR
ATAAATCCATTACCAAGAGT+TGG 0.523397 1_3:+35679150 None:intergenic
GCTCATGCTTCAAGTCCACC+TGG 0.528672 1_3:-35676214 Msa0116610:CDS
CATCTGAAGCCGTGCAAATG+TGG 0.529368 1_3:-35682011 Msa0116610:CDS
AATGATTCCAATTATTTCAG+TGG 0.530132 1_3:-35675596 Msa0116610:CDS
TCCGATATGTACCGAAGAGA+TGG 0.530600 1_3:-35682048 Msa0116610:CDS
CCTCCACTATTCCCCTACTA+GGG 0.530781 1_3:+35675909 None:intergenic
AGTAGGGTCCTACAAATCAT+TGG 0.533965 1_3:-35679489 Msa0116610:CDS
TTAGCTTCACTGCCAAGCAC+TGG 0.533987 1_3:-35675214 Msa0116610:three_prime_UTR
AACTTATTCAGCAGCTTCCG+TGG 0.534099 1_3:-35678567 Msa0116610:CDS
ATTATATCTTCCCAAAAGGC+TGG 0.535132 1_3:+35678272 None:intergenic
ATCTTCCCAAAAGGCTGGTG+TGG 0.535708 1_3:+35678277 None:intergenic
GCATGAATTTCCCACCAGTA+AGG 0.536061 1_3:+35674822 None:intergenic
AAAGAATCCGGTTCAAGCAA+TGG 0.536155 1_3:-35679202 Msa0116610:CDS
AATCATTCCAACTTCCCCAC+TGG 0.536419 1_3:+35675612 None:intergenic
ATCAAGCCATCATCTGAAGC+AGG 0.536789 1_3:-35678141 Msa0116610:CDS
AATCTGGGTCCTATGCATTA+CGG 0.537519 1_3:-35675191 Msa0116610:three_prime_UTR
AGTATTGAATAATGAAATAG+GGG 0.537525 1_3:-35675558 Msa0116610:CDS
TTGCTTGATGGGAAAGCGTA+TGG 0.541973 1_3:+35677690 None:intergenic
GTTGCTGGACATGATCCTAA+AGG 0.542234 1_3:-35677768 Msa0116610:CDS
ACCTCATAGCCACATTTGCA+CGG 0.542997 1_3:+35682002 None:intergenic
ATGGTGTTGGCATCATATAA+TGG 0.543359 1_3:-35681586 Msa0116610:CDS
TATGGTATTTGACCCTAGTA+GGG 0.545322 1_3:-35675921 Msa0116610:CDS
GTCAGGAGAGCCGACCTTGG+CGG 0.545951 1_3:-35675119 Msa0116610:three_prime_UTR
TTCGTAACCAGAATCATTCA+GGG 0.546044 1_3:-35678109 Msa0116610:CDS
CTTGATTGGCTTAGATTCTG+AGG 0.546144 1_3:+35678158 None:intergenic
TGTCTTTGGAACTAGATGCA+TGG 0.546869 1_3:-35677953 Msa0116610:CDS
TTGATTCCCAAACCCTGCCA+GGG 0.546915 1_3:-35678796 Msa0116610:CDS
CAGGGGCTGCTTGCACCGAA+AGG 0.546984 1_3:-35678778 Msa0116610:CDS
GGTGCAAGCAGCCCCTGGCA+GGG 0.547321 1_3:+35678784 None:intergenic
TAACAAGGCAGTTTCAAGTC+GGG 0.547611 1_3:-35678468 Msa0116610:CDS
GTCGATATCTCGTACAGCAA+CGG 0.548555 1_3:-35681026 Msa0116610:CDS
TGTTGAGTTCAAGAATCCTA+TGG 0.549167 1_3:-35675939 Msa0116610:CDS
TTGAAGATTCATATTTCACT+CGG 0.550404 1_3:-35678394 Msa0116610:CDS
AGGTACAGATACACTATTGG+TGG 0.551077 1_3:+35678700 None:intergenic
CATTACCAAGAGTTGGCTGC+AGG 0.551503 1_3:+35679157 None:intergenic
GCAGCGATAATTTAGCCTCC+AGG 0.551527 1_3:-35678199 Msa0116610:CDS
CCATGCATGACAATACTTTG+TGG 0.552172 1_3:+35680609 None:intergenic
ATACACTAATTAGTGAATAA+CGG 0.552368 1_3:+35674712 None:intergenic
TGATTTGCAGCAATCATTTG+GGG 0.553932 1_3:-35677790 Msa0116610:CDS
ACAATGAGGTGAATAATGCC+TGG 0.554007 1_3:+35678181 None:intergenic
AGGACCCAGATTCCAGTGCT+TGG 0.554245 1_3:+35675202 None:intergenic
CTTCAACGTAGGGAGTACTT+TGG 0.557460 1_3:-35681073 Msa0116610:CDS
GAAATAATTCTGGTACCAGT+AGG 0.557629 1_3:-35680452 Msa0116610:CDS
TCCAAGACAATAATCAGTCC+AGG 0.558162 1_3:-35677854 Msa0116610:CDS
GTACTTTGGAAGGTATGGAA+AGG 0.558874 1_3:-35681059 Msa0116610:CDS
GCAGGCAGGACAACGGCCCT+CGG 0.559341 1_3:+35681542 None:intergenic
TAAGCAAACAAGAGTGGGTG+AGG 0.562447 1_3:+35675234 None:intergenic
TCATAAGGTGAACGGCAGGC+AGG 0.563242 1_3:+35681528 None:intergenic
GTGAGTGAATGAGAGAGAGA+AGG 0.563915 1_3:+35682971 None:intergenic
AGCCTAAATCATCAGATGGA+AGG 0.565652 1_3:-35681337 Msa0116610:CDS
TCTTGGTTCAAATAACCAGT+GGG 0.566345 1_3:-35675627 Msa0116610:CDS
ATAATTGTGACAGAATTTCA+GGG 0.567695 1_3:+35675280 None:intergenic
TGGTTCAGATGTTGATAACA+AGG 0.567738 1_3:-35678018 Msa0116610:CDS
GAGAAGACCGTGAAGAGTGA+GGG 0.567760 1_3:-35678044 Msa0116610:CDS
ACCATAATAACCGCCAAGGT+CGG 0.571077 1_3:+35675109 None:intergenic
TGAGTCAATTGTTATCAATG+AGG 0.573873 1_3:-35678633 Msa0116610:CDS
TTTGTCATAAGGTGAACGGC+AGG 0.574302 1_3:+35681524 None:intergenic
TCTTCATCTGCAAGGTGAAG+AGG 0.574669 1_3:+35681257 None:intergenic
AAGTTATAGGCCTTACTGGT+GGG 0.576685 1_3:-35674832 Msa0116610:three_prime_UTR
AGTTCATCTTCATCACGTGC+TGG 0.577681 1_3:-35678851 Msa0116610:CDS
TTAAAGCCTAAATCATCAGA+TGG 0.577945 1_3:-35681341 Msa0116610:CDS
TTGAACAAACATCACATTGG+TGG 0.578775 1_3:-35678671 Msa0116610:CDS
AACTTGATATTCTCATAACT+AGG 0.580208 1_3:+35675518 None:intergenic
CTACTAGGGTCAAATACCAT+AGG 0.581897 1_3:+35675923 None:intergenic
TGAAGATTCATATTTCACTC+GGG 0.583365 1_3:-35678393 Msa0116610:CDS
TTAGGATCATCTGGTGGTGG+AGG 0.584690 1_3:+35679426 None:intergenic
GTAGGGGAATAGTGGAGGAA+AGG 0.584951 1_3:-35675904 Msa0116610:CDS
ATAGCACAGAATTGCTTGAT+GGG 0.586568 1_3:+35677679 None:intergenic
CTTAGATTCTGAGGACAATG+AGG 0.586654 1_3:+35678167 None:intergenic
CAGATTTGAAACAAGTCTCA+AGG 0.587356 1_3:+35675318 None:intergenic
AACTCACATCTTCATCTGCA+AGG 0.587859 1_3:+35681249 None:intergenic
AGAGAAGACCGTGAAGAGTG+AGG 0.588042 1_3:-35678045 Msa0116610:CDS
GGCTCTCAGATGGCAGTGTG+TGG 0.592367 1_3:-35675409 Msa0116610:three_prime_UTR
TGTTTAGGATCATCTGGTGG+TGG 0.593160 1_3:+35679423 None:intergenic
GAGGAAGTAAGGTTTGCCCC+AGG 0.593890 1_3:+35675861 None:intergenic
GAAGCTAAGCAAACAAGAGT+GGG 0.594190 1_3:+35675229 None:intergenic
TACTAGAAGGTAGATCATTG+AGG 0.594731 1_3:-35680728 Msa0116610:intron
CCACAAAGTATTGTCATGCA+TGG 0.596103 1_3:-35680609 Msa0116610:CDS
CCACCAGCTACTTCAACGTA+GGG 0.597126 1_3:-35681083 Msa0116610:intron
AAATGATTGCTGCAAATCAG+AGG 0.597628 1_3:+35677794 None:intergenic
AGGAAGCTTGTACTCACAGA+AGG 0.598102 1_3:+35678521 None:intergenic
GGTTCAGTAAAATATTCAGA+AGG 0.600729 1_3:+35678083 None:intergenic
CTGCTGATATTTACAGATGG+AGG 0.601283 1_3:+35675971 None:intergenic
GGTGCTTTGAAGGATGTGTA+TGG 0.601951 1_3:+35677891 None:intergenic
ACTTATTCAGCAGCTTCCGT+GGG 0.602554 1_3:-35678566 Msa0116610:CDS
GAAGTTATAGGCCTTACTGG+TGG 0.604366 1_3:-35674833 Msa0116610:three_prime_UTR
TGAGAGCGGAGAAGAGAGAG+TGG 0.604806 1_3:+35682913 None:intergenic
AATGTCAGGAGAGCCGACCT+TGG 0.605273 1_3:-35675122 Msa0116610:three_prime_UTR
TGAAGCTAAGCAAACAAGAG+TGG 0.610309 1_3:+35675228 None:intergenic
GTTTCAAGTCGGGATGTGCA+TGG 0.610826 1_3:-35678458 Msa0116610:CDS
TGTATCTGGCAGTCTTCCAA+AGG 0.610994 1_3:-35678879 Msa0116610:CDS
ACCGTGAAGAGTGAGGGTAC+TGG 0.611276 1_3:-35678038 Msa0116610:CDS
ATCCTGCTGATATTTACAGA+TGG 0.611333 1_3:+35675968 None:intergenic
CTAACAAGGCAGTTTCAAGT+CGG 0.612322 1_3:-35678469 Msa0116610:CDS
TGATGTTTGTTCAACTCTGA+AGG 0.613376 1_3:+35678680 None:intergenic
TCCACCAGCTACTTCAACGT+AGG 0.615567 1_3:-35681084 Msa0116610:intron
CTCATGCTTCAAGTCCACCT+GGG 0.617092 1_3:-35676213 Msa0116610:CDS
CCCTAGTAGGGGAATAGTGG+AGG 0.622353 1_3:-35675909 Msa0116610:CDS
GTTCTTTGTCATAAGGTGAA+CGG 0.623891 1_3:+35681520 None:intergenic
TGGGAAATTCATGCTATGAA+TGG 0.624607 1_3:-35674813 Msa0116610:three_prime_UTR
AACGTAGGGAGTACTTTGGA+AGG 0.624800 1_3:-35681069 Msa0116610:CDS
GGCTCATAAGGATGAAACCG+AGG 0.625328 1_3:-35681559 Msa0116610:CDS
AACTCACTGGAAAATTTAGA+GGG 0.627206 1_3:+35677624 None:intergenic
CAATGGCAGCTAACTGTCGA+AGG 0.628948 1_3:-35681488 Msa0116610:intron
AACAAGGTTTCTTCAGACGT+CGG 0.630644 1_3:-35678002 Msa0116610:CDS
TGCTTGATGGGAAAGCGTAT+GGG 0.632136 1_3:+35677691 None:intergenic
TTCTTGGTTCAAATAACCAG+TGG 0.634073 1_3:-35675628 Msa0116610:CDS
GGAGGTAAAACACTCCCTGA+AGG 0.636149 1_3:+35679444 None:intergenic
CTGTCTGACATTGCAAACCC+AGG 0.638003 1_3:+35676196 None:intergenic
GTCTGACAACCGTAATGCAT+AGG 0.638270 1_3:+35675182 None:intergenic
AGAAAAGCTTACACTGAGAG+CGG 0.639961 1_3:+35682899 None:intergenic
TGCACTAATAGGCTCTCAGA+TGG 0.639965 1_3:-35675419 Msa0116610:three_prime_UTR
GAGCCTATTAGTGCATTGAA+GGG 0.641833 1_3:+35675427 None:intergenic
GATCAACAACAACCCGGCAA+AGG 0.642337 1_3:-35678221 Msa0116610:CDS
GACTGTGATCAACAACAACC+CGG 0.643140 1_3:-35678227 Msa0116610:CDS
GAGCGGAGAAGAGAGAGTGG+TGG 0.646204 1_3:+35682916 None:intergenic
TTATGCCATCAAATGGTCAA+CGG 0.646638 1_3:-35675261 Msa0116610:three_prime_UTR
TTTATGTGGCTGAAATTGTG+TGG 0.649931 1_3:-35675354 Msa0116610:three_prime_UTR
TTGTTAGTATTCAAATCATG+TGG 0.654500 1_3:+35678485 None:intergenic
TGATTCCCAAACCCTGCCAG+GGG 0.654633 1_3:-35678795 Msa0116610:CDS
ACTCTCCCGCGAGAAAACCC+AGG 0.659154 1_3:+35676166 None:intergenic
AAAGGGAATTATGCATCTGG+TGG 0.660201 1_3:-35677750 Msa0116610:CDS
GTGAACGGCAGGCAGGACAA+CGG 0.664000 1_3:+35681535 None:intergenic
GCTCATAAGGATGAAACCGA+GGG 0.665241 1_3:-35681558 Msa0116610:CDS
TCTGACATTGCAAACCCAGG+TGG 0.667610 1_3:+35676199 None:intergenic
ATGGTATTTGACCCTAGTAG+GGG 0.670671 1_3:-35675920 Msa0116610:CDS
GCCGTGCAAATGTGGCTATG+AGG 0.674534 1_3:-35682003 Msa0116610:intron
ACTCACCATAATAACCGCCA+AGG 0.679005 1_3:+35675105 None:intergenic
ATGTCAGACAGAATACCACC+TGG 0.679445 1_3:-35676184 Msa0116610:CDS
ACATGATTTGAATACTAACA+AGG 0.682637 1_3:-35678483 Msa0116610:CDS
TCATGCATGGCTCAGAAATG+TGG 0.685600 1_3:-35680596 Msa0116610:intron
TGAACAACTAATATTCATGG+TGG 0.689343 1_3:-35675478 Msa0116610:three_prime_UTR
GAGTTGAACAAACATCACAT+TGG 0.697798 1_3:-35678674 Msa0116610:CDS
CTTGGTTCAAATAACCAGTG+GGG 0.702385 1_3:-35675626 Msa0116610:CDS
TATTGTGTAGCTGAATACCG+TGG 0.706869 1_3:-35682103 Msa0116610:intron
ACAGATGGAGGAGCATACTG+TGG 0.707322 1_3:+35675983 None:intergenic
TTATGACAAAGAACGCATTG+TGG 0.713769 1_3:-35681511 Msa0116610:CDS
GCAGTCCAATTATGTACACG+AGG 0.715517 1_3:+35681279 None:intergenic
TGTCAGACAGAATACCACCT+GGG 0.740545 1_3:-35676183 Msa0116610:CDS
AGTATTCAAATCATGTGGTG+CGG 0.743229 1_3:+35678490 None:intergenic
CTCCCGCGAGAAAACCCAGG+TGG 0.744790 1_3:+35676169 None:intergenic
GTATTGAATAATGAAATAGG+GGG 0.745932 1_3:-35675557 Msa0116610:CDS
ATGAGGTGAATAATGCCTGG+AGG 0.749776 1_3:+35678184 None:intergenic
ACATGTTTAGGATCATCTGG+TGG 0.761344 1_3:+35679420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAAAAAATGAGTTA+GGG + chr1_3:35677305-35677324 None:intergenic 10.0%
!! TTAAATAAAAAAAATGAGTT+AGG + chr1_3:35677306-35677325 None:intergenic 10.0%
!!! TTTTTTTTATTTAACTATAG+AGG - chr1_3:35677312-35677331 Msa0116610:intron 10.0%
!! ACTATAATATAAAAAACATT+TGG - chr1_3:35680758-35680777 Msa0116610:CDS 10.0%
!!! ATATCAAGTAATCAATTTTT+AGG - chr1_3:35676164-35676183 Msa0116610:CDS 15.0%
!!! GATTTAATTTTCTTATCTTT+AGG - chr1_3:35676787-35676806 Msa0116610:intron 15.0%
!!! TTCTACTATTTTGTTTTTTT+AGG - chr1_3:35678308-35678327 Msa0116610:CDS 15.0%
!! AAAAAAATAAAAAAACTCAC+TGG + chr1_3:35679991-35680010 None:intergenic 15.0%
!!! TTCTGTTTTATTTTATTATG+TGG - chr1_3:35680513-35680532 Msa0116610:intron 15.0%
!! AAATTTATCAATTGAACATT+TGG - chr1_3:35680783-35680802 Msa0116610:CDS 15.0%
!!! TTTTTTTACTTTTCTACTAT+AGG - chr1_3:35680814-35680833 Msa0116610:intron 15.0%
!!! AAGTATTGAATAATGAAATA+GGG - chr1_3:35682040-35682059 Msa0116610:CDS 15.0%
!!! TAAAATTTAAGGTATAAACA+TGG + chr1_3:35682644-35682663 None:intergenic 15.0%
!! CATATAAAAGGTAAAATTTA+AGG + chr1_3:35682655-35682674 None:intergenic 15.0%
!! GATATATATTAAACTCTATT+TGG + chr1_3:35682984-35683003 None:intergenic 15.0%
!!! TTTCATTTCACTTTTTCTTA+GGG - chr1_3:35674770-35674789 Msa0116610:three_prime_UTR 20.0%
!!! TGAAATTTGTTGCAATTATT+AGG - chr1_3:35675072-35675091 Msa0116610:intron 20.0%
!!! TTGTTATTCTTCTTGTTTTT+AGG - chr1_3:35675366-35675385 Msa0116610:three_prime_UTR 20.0%
!!! TGTTATTCTTCTTGTTTTTA+GGG - chr1_3:35675367-35675386 Msa0116610:three_prime_UTR 20.0%
!! TTAAGATGAAAAAACCTATT+TGG - chr1_3:35675867-35675886 Msa0116610:CDS 20.0%
!! TTAAACTACACAAACTAATA+TGG + chr1_3:35676440-35676459 None:intergenic 20.0%
!! AAAACATGTTATCAATTGAA+GGG + chr1_3:35676489-35676508 None:intergenic 20.0%
!! AAAAACATGTTATCAATTGA+AGG + chr1_3:35676490-35676509 None:intergenic 20.0%
!!! TCAATTGATAACATGTTTTT+TGG - chr1_3:35676490-35676509 Msa0116610:intron 20.0%
!! GAAAATAATGACATAAACAA+GGG + chr1_3:35676703-35676722 None:intergenic 20.0%
!! AGAAAATAATGACATAAACA+AGG + chr1_3:35676704-35676723 None:intergenic 20.0%
!! GTATATCTATAGTATTATTC+CGG - chr1_3:35677125-35677144 Msa0116610:intron 20.0%
!! GATAATTTATATAGTATGTG+AGG + chr1_3:35677516-35677535 None:intergenic 20.0%
!! TACTATATAAATTATCTTGC+TGG - chr1_3:35677520-35677539 Msa0116610:intron 20.0%
!! ATTCAAAAGTTCAATCAAAA+TGG + chr1_3:35677678-35677697 None:intergenic 20.0%
!!! TTTGGTAGTTCAAATTTTAA+TGG - chr1_3:35677756-35677775 Msa0116610:CDS 20.0%
!!! GTAATGGATTTATGAATATT+TGG - chr1_3:35678459-35678478 Msa0116610:CDS 20.0%
!! ATTCTTGATACAAAAAAATC+AGG - chr1_3:35678847-35678866 Msa0116610:CDS 20.0%
!! TTCTTGATACAAAAAAATCA+GGG - chr1_3:35678848-35678867 Msa0116610:CDS 20.0%
!!! TATATCTAACATTTTGTCTT+TGG - chr1_3:35679632-35679651 Msa0116610:intron 20.0%
!!! TTGTTTTTTTGTTTTTTGAG+AGG - chr1_3:35680342-35680361 Msa0116610:intron 20.0%
!! TTAACAAAATTTGATGTTCA+TGG - chr1_3:35680436-35680455 Msa0116610:CDS 20.0%
!! TAACAAAATTTGATGTTCAT+GGG - chr1_3:35680437-35680456 Msa0116610:CDS 20.0%
!!! TTATAGTTGCACTTTTTAAT+AGG + chr1_3:35680745-35680764 None:intergenic 20.0%
!! ATAATGCATCTTTAATAAAG+CGG - chr1_3:35681151-35681170 Msa0116610:intron 20.0%
!!! GAAGTATTGAATAATGAAAT+AGG - chr1_3:35682039-35682058 Msa0116610:CDS 20.0%
!!! AGTATTGAATAATGAAATAG+GGG - chr1_3:35682041-35682060 Msa0116610:CDS 20.0%
!!! TATTATGGTGAGTTTTAAAT+TGG - chr1_3:35682504-35682523 Msa0116610:intron 20.0%
!! ATACACTAATTAGTGAATAA+CGG + chr1_3:35682890-35682909 None:intergenic 20.0%
!!! CTTTCATTTCACTTTTTCTT+AGG - chr1_3:35674769-35674788 Msa0116610:three_prime_UTR 25.0%
! ATAAACAAACGCAGAATAAT+CGG + chr1_3:35674923-35674942 None:intergenic 25.0%
! CAACGTATACAAAAAATAAG+CGG + chr1_3:35674961-35674980 None:intergenic 25.0%
!!! TTTTTCCTCTCTTTGTTTTT+AGG - chr1_3:35675285-35675304 Msa0116610:three_prime_UTR 25.0%
!!! TTTTCCTCTCTTTGTTTTTA+GGG - chr1_3:35675286-35675305 Msa0116610:three_prime_UTR 25.0%
!!! ATTGTTTTCTTGTTGTCATT+AGG - chr1_3:35675453-35675472 Msa0116610:three_prime_UTR 25.0%
!!! TTGTTTTCTTGTTGTCATTA+GGG - chr1_3:35675454-35675473 Msa0116610:three_prime_UTR 25.0%
! ATGATACACATGTAAGAAAA+TGG + chr1_3:35675675-35675694 None:intergenic 25.0%
! AAGAACTCATAATATGTCTT+CGG + chr1_3:35675827-35675846 None:intergenic 25.0%
! TATCAATTGAAGGGATAAAA+TGG + chr1_3:35676480-35676499 None:intergenic 25.0%
! TCTACCTAATTATCATTTGA+AGG - chr1_3:35676723-35676742 Msa0116610:intron 25.0%
!!! GTTCATTTTTTTGTACTAGA+AGG - chr1_3:35676858-35676877 Msa0116610:intron 25.0%
!!! TAAGGATATACCATTTTGAT+TGG - chr1_3:35676894-35676913 Msa0116610:intron 25.0%
!!! AAGGATATACCATTTTGATT+GGG - chr1_3:35676895-35676914 Msa0116610:intron 25.0%
! TGGATTAAACTTTGTAGAAT+GGG - chr1_3:35677103-35677122 Msa0116610:intron 25.0%
! TATTATTCCGGAAATAATTC+TGG - chr1_3:35677137-35677156 Msa0116610:intron 25.0%
! TAAAACTGAAAAGATAACAC+AGG - chr1_3:35677211-35677230 Msa0116610:intron 25.0%
! AAAACTGAAAAGATAACACA+GGG - chr1_3:35677212-35677231 Msa0116610:intron 25.0%
! TACGTAAGGAAATAATTTAG+TGG + chr1_3:35677385-35677404 None:intergenic 25.0%
! TGCTAATACTAATTCATCTT+TGG + chr1_3:35677612-35677631 None:intergenic 25.0%
! AATTAGTATTAGCATTTGCA+AGG - chr1_3:35677618-35677637 Msa0116610:intron 25.0%
! TACCAAATGAATACACAATA+TGG + chr1_3:35677743-35677762 None:intergenic 25.0%
! TGACATATTTGTGGAAATTA+TGG + chr1_3:35677897-35677916 None:intergenic 25.0%
! ATACTTGTTTGACATATTTG+TGG + chr1_3:35677906-35677925 None:intergenic 25.0%
! ACAAATATGTCAAACAAGTA+TGG - chr1_3:35677905-35677924 Msa0116610:CDS 25.0%
! CAAATATGTCAAACAAGTAT+GGG - chr1_3:35677906-35677925 Msa0116610:CDS 25.0%
!! ATCTTCTTTGATTGTAGTTT+TGG - chr1_3:35678064-35678083 Msa0116610:CDS 25.0%
!! TTTTGTCTTTTGTGTGTTAA+AGG - chr1_3:35678087-35678106 Msa0116610:CDS 25.0%
!! ACTTACATCTAAAGAACTTT+TGG + chr1_3:35678228-35678247 None:intergenic 25.0%
! ATTAATGAACATTACTTCTG+TGG - chr1_3:35678248-35678267 Msa0116610:CDS 25.0%
! TGTGGTAAACTTATTTATTG+TGG - chr1_3:35678266-35678285 Msa0116610:CDS 25.0%
! GTGGTAAACTTATTTATTGT+GGG - chr1_3:35678267-35678286 Msa0116610:CDS 25.0%
! ACTAAAAAAAATGCTAGAAG+TGG + chr1_3:35678659-35678678 None:intergenic 25.0%
!!! ACTTTTTGGTATATTGTACT+AGG - chr1_3:35678689-35678708 Msa0116610:CDS 25.0%
!!! CTTTTTGGTATATTGTACTA+GGG - chr1_3:35678690-35678709 Msa0116610:CDS 25.0%
! TCTTGATACAAAAAAATCAG+GGG - chr1_3:35678849-35678868 Msa0116610:CDS 25.0%
! TTGTTAGTATTCAAATCATG+TGG + chr1_3:35679117-35679136 None:intergenic 25.0%
! ACATGATTTGAATACTAACA+AGG - chr1_3:35679116-35679135 Msa0116610:intron 25.0%
! TTGAAGATTCATATTTCACT+CGG - chr1_3:35679205-35679224 Msa0116610:CDS 25.0%
!! AGATTCAATAGTTAAGTTGT+TGG - chr1_3:35679671-35679690 Msa0116610:intron 25.0%
!! TGGATTTTTCCTTAAAAATC+CGG - chr1_3:35680207-35680226 Msa0116610:intron 25.0%
! TAATAGCTATGACATAATGT+TGG - chr1_3:35680382-35680401 Msa0116610:intron 25.0%
! CATTAATTTAGTGCTTCTAT+AGG - chr1_3:35680411-35680430 Msa0116610:intron 25.0%
! TTATTCCTGTATATATGTTC+TGG - chr1_3:35680539-35680558 Msa0116610:intron 25.0%
! GATGTCTTTATGAAGTTATT+TGG - chr1_3:35680561-35680580 Msa0116610:intron 25.0%
!!! ACTTTAAAACTAGCCAATTA+AGG - chr1_3:35680698-35680717 Msa0116610:intron 25.0%
!! ATTTTCGAATGGTTTTCTAA+TGG + chr1_3:35680971-35680990 None:intergenic 25.0%
! AAAACCATTCGAAAATTTAG+AGG - chr1_3:35680975-35680994 Msa0116610:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG + chr1_3:35681015-35681034 None:intergenic 25.0%
! TTTCAGATCATATTGGAAAT+AGG - chr1_3:35681839-35681858 Msa0116610:intron 25.0%
! AATGATTCCAATTATTTCAG+TGG - chr1_3:35682003-35682022 Msa0116610:intron 25.0%
! GTATTGAATAATGAAATAGG+GGG - chr1_3:35682042-35682061 Msa0116610:CDS 25.0%
! AACTTGATATTCTCATAACT+AGG + chr1_3:35682084-35682103 None:intergenic 25.0%
!!! ATCTTTTAACATTTTGAGAC+AGG + chr1_3:35682222-35682241 None:intergenic 25.0%
! ATAATTGTGACAGAATTTCA+GGG + chr1_3:35682322-35682341 None:intergenic 25.0%
! TCAGAAACTGATCATATAAA+AGG + chr1_3:35682667-35682686 None:intergenic 25.0%
!!! TCTATTTTTGCAGTTAAACT+GGG - chr1_3:35682704-35682723 Msa0116610:intron 25.0%
! AATTCTGAACAAACAATTTC+AGG + chr1_3:35682848-35682867 None:intergenic 25.0%
!!! TGTATGTACAAAGTTAGTTT+TGG - chr1_3:35682934-35682953 Msa0116610:five_prime_UTR 25.0%
! AACTCTATTTGGTAAAAAGT+TGG + chr1_3:35682973-35682992 None:intergenic 25.0%
AATGAAGAATCTCGAAATGA+GGG + chr1_3:35674739-35674758 None:intergenic 30.0%
AAATGAAGAATCTCGAAATG+AGG + chr1_3:35674740-35674759 None:intergenic 30.0%
AAGTGAAATGAAAGTAACGA+GGG + chr1_3:35674763-35674782 None:intergenic 30.0%
AAAGTGAAATGAAAGTAACG+AGG + chr1_3:35674764-35674783 None:intergenic 30.0%
ATCTTCACATGTTGAAATCA+CGG + chr1_3:35674895-35674914 None:intergenic 30.0%
AAACCAGTCACAAAAAATGA+CGG + chr1_3:35675108-35675127 None:intergenic 30.0%
AAAACCCTAAAAACAAAGAG+AGG + chr1_3:35675293-35675312 None:intergenic 30.0%
AGATGAAAAAACCTATTTGG+TGG - chr1_3:35675870-35675889 Msa0116610:CDS 30.0%
GATGAAAAAACCTATTTGGT+GGG - chr1_3:35675871-35675890 Msa0116610:CDS 30.0%
! AAAAGCAAGAAAAGCATAAC+AGG - chr1_3:35675944-35675963 Msa0116610:CDS 30.0%
! TTGGCATCATATAATGGAAA+TGG - chr1_3:35676019-35676038 Msa0116610:intron 30.0%
! TATAATGGAAATGGCTCATA+AGG - chr1_3:35676028-35676047 Msa0116610:intron 30.0%
TTAAAGCCTAAATCATCAGA+TGG - chr1_3:35676258-35676277 Msa0116610:intron 30.0%
CCAACCTTCAAATGATAATT+AGG + chr1_3:35676730-35676749 None:intergenic 30.0%
CCTAATTATCATTTGAAGGT+TGG - chr1_3:35676727-35676746 Msa0116610:intron 30.0%
ATCATTTGAAGGTTGGAATT+TGG - chr1_3:35676734-35676753 Msa0116610:intron 30.0%
AAGTAACAACCCAATCAAAA+TGG + chr1_3:35676907-35676926 None:intergenic 30.0%
! TTTTCGTGATTTTGTGATGA+TGG - chr1_3:35676933-35676952 Msa0116610:intron 30.0%
! TTTCGTGATTTTGTGATGAT+GGG - chr1_3:35676934-35676953 Msa0116610:intron 30.0%
CTGGATTAAACTTTGTAGAA+TGG - chr1_3:35677102-35677121 Msa0116610:intron 30.0%
! CTCTTGTAAATCTACGATTT+TGG + chr1_3:35677181-35677200 None:intergenic 30.0%
AGGAAATAATTTAGTGGTTC+AGG + chr1_3:35677379-35677398 None:intergenic 30.0%
AATTAAGTAGCAGATTGCAT+GGG + chr1_3:35677434-35677453 None:intergenic 30.0%
TAATTAAGTAGCAGATTGCA+TGG + chr1_3:35677435-35677454 None:intergenic 30.0%
CTACTACTATGGTCTATATT+AGG + chr1_3:35677490-35677509 None:intergenic 30.0%
CTAATATAGACCATAGTAGT+AGG - chr1_3:35677488-35677507 Msa0116610:intron 30.0%
TGTTTGTATCTACATGATCA+TGG - chr1_3:35677566-35677585 Msa0116610:intron 30.0%
GACCATATTGTGTATTCATT+TGG - chr1_3:35677738-35677757 Msa0116610:CDS 30.0%
! TCAATGTCTTTTTACTTCTC+TGG - chr1_3:35677786-35677805 Msa0116610:CDS 30.0%
TGAAAGCAATCAAACTTAAG+AGG + chr1_3:35677820-35677839 None:intergenic 30.0%
ATCATGCATAACATAGTCTT+AGG - chr1_3:35677866-35677885 Msa0116610:CDS 30.0%
AAATAAAGAGGTCATACAGA+AGG + chr1_3:35677962-35677981 None:intergenic 30.0%
! TATGACCTCTTTATTTGTCT+TGG - chr1_3:35677966-35677985 Msa0116610:CDS 30.0%
! TTTTGTGTGTTAAAGGAGTA+GGG - chr1_3:35678094-35678113 Msa0116610:CDS 30.0%
AATAATTTGAATCGTCCTTC+AGG - chr1_3:35678140-35678159 Msa0116610:CDS 30.0%
ATAATTTGAATCGTCCTTCA+GGG - chr1_3:35678141-35678160 Msa0116610:CDS 30.0%
AAGAACCAGATTAAAGAATC+CGG - chr1_3:35678385-35678404 Msa0116610:CDS 30.0%
ATAAATCCATTACCAAGAGT+TGG + chr1_3:35678452-35678471 None:intergenic 30.0%
!!! TCGCATTAATTTGTTTTGCA+TGG - chr1_3:35678487-35678506 Msa0116610:CDS 30.0%
AACTGCCATAAAAATATAGC+TGG + chr1_3:35678610-35678629 None:intergenic 30.0%
!! GAAGTGGATTTGTTATTTCA+TGG + chr1_3:35678643-35678662 None:intergenic 30.0%
TGTATCAAGAATAGACCTTT+CGG + chr1_3:35678839-35678858 None:intergenic 30.0%
TGAGTCAATTGTTATCAATG+AGG - chr1_3:35678966-35678985 Msa0116610:intron 30.0%
TGAAGATTCATATTTCACTC+GGG - chr1_3:35679206-35679225 Msa0116610:CDS 30.0%
CACAATTATATCTTCCCAAA+AGG + chr1_3:35679334-35679353 None:intergenic 30.0%
!! CTTTTGGGAAGATATAATTG+TGG - chr1_3:35679332-35679351 Msa0116610:intron 30.0%
GGTTCAGTAAAATATTCAGA+AGG + chr1_3:35679519-35679538 None:intergenic 30.0%
! TGAATATTTTACTGAACCCT+TGG - chr1_3:35679521-35679540 Msa0116610:intron 30.0%
! GAATATTTTACTGAACCCTT+GGG - chr1_3:35679522-35679541 Msa0116610:intron 30.0%
! AATATTTTACTGAACCCTTG+GGG - chr1_3:35679523-35679542 Msa0116610:intron 30.0%
! ATTCAAGGAATCATTTTGTC+TGG + chr1_3:35679781-35679800 None:intergenic 30.0%
!!! CAAATCAGAGGTTTTATTCA+AGG + chr1_3:35679796-35679815 None:intergenic 30.0%
AACTCACTGGAAAATTTAGA+GGG + chr1_3:35679978-35679997 None:intergenic 30.0%
AAACTCACTGGAAAATTTAG+AGG + chr1_3:35679979-35679998 None:intergenic 30.0%
GTTACTCATTAACACACATT+GGG + chr1_3:35680029-35680048 None:intergenic 30.0%
TGTTACTCATTAACACACAT+TGG + chr1_3:35680030-35680049 None:intergenic 30.0%
AAGTACTTCATCTTTGAGTA+TGG - chr1_3:35680055-35680074 Msa0116610:intron 30.0%
! TAAGTGTTTTCTTTCCAATC+AGG - chr1_3:35680082-35680101 Msa0116610:intron 30.0%
! ATAGATTCTCCGGATTTTTA+AGG + chr1_3:35680219-35680238 None:intergenic 30.0%
TAAGTGAACGAGAAAGATAA+AGG + chr1_3:35680247-35680266 None:intergenic 30.0%
TTTCTCGTTCACTTAATTGA+TGG - chr1_3:35680252-35680271 Msa0116610:intron 30.0%
CACTTAATTGATGGAGTAAA+TGG - chr1_3:35680261-35680280 Msa0116610:intron 30.0%
ATCAACAATGTTGCAATCTT+TGG - chr1_3:35680595-35680614 Msa0116610:intron 30.0%
!! AGTTGCACTTTTTAATAGGT+TGG + chr1_3:35680741-35680760 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr1_3:35680902-35680921 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr1_3:35680903-35680922 Msa0116610:intron 30.0%
! GGTTTTCTAATGGTTTTCTT+AGG + chr1_3:35680961-35680980 None:intergenic 30.0%
! TTGACCTCTAAATTTTCGAA+TGG + chr1_3:35680982-35681001 None:intergenic 30.0%
AAATTTAGAGGTCAATGAGT+TGG - chr1_3:35680987-35681006 Msa0116610:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr1_3:35681019-35681038 Msa0116610:CDS 30.0%
AACATTTCATGATACACCAA+GGG + chr1_3:35681209-35681228 None:intergenic 30.0%
AAACATTTCATGATACACCA+AGG + chr1_3:35681210-35681229 None:intergenic 30.0%
! AATAGTACACCTTTTAACCT+GGG - chr1_3:35681721-35681740 Msa0116610:intron 30.0%
TCAAGACTTTCAGATCATAT+TGG - chr1_3:35681832-35681851 Msa0116610:intron 30.0%
ATGCTTATAGAACTAATTCG+AGG - chr1_3:35681878-35681897 Msa0116610:intron 30.0%
CAGTTCAGTAGTAATATTCT+TGG - chr1_3:35681955-35681974 Msa0116610:intron 30.0%
ATTAGTTGTTCAGTCAATTC+AGG + chr1_3:35682113-35682132 None:intergenic 30.0%
GACTGAACAACTAATATTCA+TGG - chr1_3:35682118-35682137 Msa0116610:intron 30.0%
TGAACAACTAATATTCATGG+TGG - chr1_3:35682121-35682140 Msa0116610:intron 30.0%
TGTTAAAAGATCCCTTTATG+TGG - chr1_3:35682231-35682250 Msa0116610:intron 30.0%
! AGACTTGTTTCAAATCTGTT+TGG - chr1_3:35682286-35682305 Msa0116610:intron 30.0%
CATAATTGTGACAGAATTTC+AGG + chr1_3:35682323-35682342 None:intergenic 30.0%
!! AACGATGTCAACTTTTTCTA+TGG - chr1_3:35682450-35682469 Msa0116610:intron 30.0%
!! ACGATGTCAACTTTTTCTAT+GGG - chr1_3:35682451-35682470 Msa0116610:intron 30.0%
ATAAACATGGAGCAATCTTA+GGG + chr1_3:35682631-35682650 None:intergenic 30.0%
TATAAACATGGAGCAATCTT+AGG + chr1_3:35682632-35682651 None:intergenic 30.0%
!!! CTCTATTTTTGCAGTTAAAC+TGG - chr1_3:35682703-35682722 Msa0116610:intron 30.0%
GAAACTACAATCGAAGTTAT+AGG - chr1_3:35682754-35682773 Msa0116610:intron 30.0%
! TCAGAATTTGTTTCCAAACT+CGG - chr1_3:35682860-35682879 Msa0116610:intron 30.0%
GTATACGTTGTCAGAGTTAA+CGG - chr1_3:35674971-35674990 Msa0116610:intron 35.0%
ACGGAATGTTCATTTCTGTT+AGG - chr1_3:35674990-35675009 Msa0116610:intron 35.0%
CGGAATGTTCATTTCTGTTA+GGG - chr1_3:35674991-35675010 Msa0116610:intron 35.0%
! AATGTTGATGTGCTGTGTTT+TGG - chr1_3:35675200-35675219 Msa0116610:three_prime_UTR 35.0%
CTGAGTAGGTTTATCATTTC+TGG - chr1_3:35675253-35675272 Msa0116610:three_prime_UTR 35.0%
! TATTGTGCAGCTTTTGTCAT+TGG - chr1_3:35675336-35675355 Msa0116610:three_prime_UTR 35.0%
TGAATACCGTGGAGAAAAAT+GGG - chr1_3:35675507-35675526 Msa0116610:CDS 35.0%
TAATCTACCGTTGAATACTC+TGG - chr1_3:35675694-35675713 Msa0116610:CDS 35.0%
! CATCAAACCAGAGTATTCAA+CGG + chr1_3:35675704-35675723 None:intergenic 35.0%
! TCTTTTCACAGATCTGTGTA+TGG - chr1_3:35675994-35676013 Msa0116610:CDS 35.0%
!! ATGGTGTTGGCATCATATAA+TGG - chr1_3:35676013-35676032 Msa0116610:intron 35.0%
GTTCTTTGTCATAAGGTGAA+CGG + chr1_3:35676082-35676101 None:intergenic 35.0%
ACAATGCGTTCTTTGTCATA+AGG + chr1_3:35676089-35676108 None:intergenic 35.0%
TTATGACAAAGAACGCATTG+TGG - chr1_3:35676088-35676107 Msa0116610:intron 35.0%
TTCCTTCCATCTGATGATTT+AGG + chr1_3:35676267-35676286 None:intergenic 35.0%
TTCCTACTTGAACAACACTT+TGG + chr1_3:35676668-35676687 None:intergenic 35.0%
! GGAATTTGGAATTTGTTCCT+TGG - chr1_3:35676748-35676767 Msa0116610:intron 35.0%
TACTAGAAGGTAGATCATTG+AGG - chr1_3:35676871-35676890 Msa0116610:intron 35.0%
!! GGTGGTTATTTTCATTTGCA+GGG - chr1_3:35676955-35676974 Msa0116610:intron 35.0%
ACATAGTAGCACAAAGATGT+AGG + chr1_3:35677076-35677095 None:intergenic 35.0%
! TGTGCTACTATGTTAGAAAC+TGG - chr1_3:35677083-35677102 Msa0116610:intron 35.0%
ACTGGTACCAGAATTATTTC+CGG + chr1_3:35677147-35677166 None:intergenic 35.0%
GAAATAATTCTGGTACCAGT+AGG - chr1_3:35677147-35677166 Msa0116610:intron 35.0%
AAATGAGTAGTCCTACAAGT+CGG + chr1_3:35677266-35677285 None:intergenic 35.0%
! CTTGTAGGACTACTCATTTT+CGG - chr1_3:35677267-35677286 Msa0116610:intron 35.0%
ATGAGTTAGGGTGAAGAAAA+AGG + chr1_3:35677293-35677312 None:intergenic 35.0%
ATTTCCTTACGTACATCACT+AGG - chr1_3:35677392-35677411 Msa0116610:intron 35.0%
TATATTAGGATACAGCGGAA+AGG + chr1_3:35677476-35677495 None:intergenic 35.0%
TGGTCTATATTAGGATACAG+CGG + chr1_3:35677481-35677500 None:intergenic 35.0%
TAGCATTTGCAAGGTATGAT+TGG - chr1_3:35677627-35677646 Msa0116610:intron 35.0%
! TCTTTTTACTTCTCTGGTGT+TGG - chr1_3:35677792-35677811 Msa0116610:CDS 35.0%
GACTATGTTATGCATGATGT+AGG + chr1_3:35677864-35677883 None:intergenic 35.0%
AAACAAGTATGGGTATGTCA+TGG - chr1_3:35677916-35677935 Msa0116610:CDS 35.0%
GCAATCCAAGACAAATAAAG+AGG + chr1_3:35677974-35677993 None:intergenic 35.0%
! TGAGAGTATGTCTAACTAGA+AGG + chr1_3:35678005-35678024 None:intergenic 35.0%
! CTTTTGTGTGTTAAAGGAGT+AGG - chr1_3:35678093-35678112 Msa0116610:CDS 35.0%
! TTGTAGCACCAATGATTTGT+AGG + chr1_3:35678121-35678140 None:intergenic 35.0%
! GATACATGTTTAGGATCATC+TGG + chr1_3:35678185-35678204 None:intergenic 35.0%
! AGAACTTTTGGACACTACTT+TGG + chr1_3:35678216-35678235 None:intergenic 35.0%
! CTGGTTCTTAATTGTCAAGA+TGG + chr1_3:35678374-35678393 None:intergenic 35.0%
TTGAACCGGATTCTTTAATC+TGG + chr1_3:35678393-35678412 None:intergenic 35.0%
!!! ATTTGTTTTGCATGGCAGTA+CGG - chr1_3:35678495-35678514 Msa0116610:CDS 35.0%
!! CGTCACCAGCTATATTTTTA+TGG - chr1_3:35678602-35678621 Msa0116610:CDS 35.0%
!! GTGGATTTGTTATTTCATGG+TGG + chr1_3:35678640-35678659 None:intergenic 35.0%
GAAGATGAACTAGTATCCTT+TGG + chr1_3:35678739-35678758 None:intergenic 35.0%
! TGAAGGTACAGATACACTAT+TGG + chr1_3:35678905-35678924 None:intergenic 35.0%
TGATGTTTGTTCAACTCTGA+AGG + chr1_3:35678922-35678941 None:intergenic 35.0%
GAGTTGAACAAACATCACAT+TGG - chr1_3:35678925-35678944 Msa0116610:intron 35.0%
TTGAACAAACATCACATTGG+TGG - chr1_3:35678928-35678947 Msa0116610:intron 35.0%
AGTATTCAAATCATGTGGTG+CGG + chr1_3:35679112-35679131 None:intergenic 35.0%
TTCATATTTCACTCGGGATT+CGG - chr1_3:35679212-35679231 Msa0116610:CDS 35.0%
ATTATATCTTCCCAAAAGGC+TGG + chr1_3:35679330-35679349 None:intergenic 35.0%
ATTCGTAACCAGAATCATTC+AGG - chr1_3:35679489-35679508 Msa0116610:CDS 35.0%
TTCGTAACCAGAATCATTCA+GGG - chr1_3:35679490-35679509 Msa0116610:CDS 35.0%
! ATATTTTACTGAACCCTTGG+GGG - chr1_3:35679524-35679543 Msa0116610:intron 35.0%
AAATGATTGCTGCAAATCAG+AGG + chr1_3:35679808-35679827 None:intergenic 35.0%
! TCTGATTTGCAGCAATCATT+TGG - chr1_3:35679807-35679826 Msa0116610:intron 35.0%
! CTGATTTGCAGCAATCATTT+GGG - chr1_3:35679808-35679827 Msa0116610:intron 35.0%
! TGATTTGCAGCAATCATTTG+GGG - chr1_3:35679809-35679828 Msa0116610:intron 35.0%
ATAGCACAGAATTGCTTGAT+GGG + chr1_3:35679923-35679942 None:intergenic 35.0%
ATCAAGCAATTCTGTGCTAT+CGG - chr1_3:35679923-35679942 Msa0116610:intron 35.0%
GTGCTATCGGATAAATTTGA+TGG - chr1_3:35679936-35679955 Msa0116610:intron 35.0%
ATTTGATGGAAGTCTGTCTT+TGG - chr1_3:35679950-35679969 Msa0116610:intron 35.0%
TACTTCATCTTTGAGTATGG+TGG - chr1_3:35680058-35680077 Msa0116610:intron 35.0%
GACAATACAGAAAACCTGAT+TGG + chr1_3:35680099-35680118 None:intergenic 35.0%
ATCCTGCTTGCTCAATTAAT+TGG - chr1_3:35680187-35680206 Msa0116610:intron 35.0%
ATCCAATTAATTGAGCAAGC+AGG + chr1_3:35680192-35680211 None:intergenic 35.0%
AAAGGTGAGAATAGATTCTC+CGG + chr1_3:35680229-35680248 None:intergenic 35.0%
TGAAACACATTCATTGTCGA+TGG - chr1_3:35680297-35680316 Msa0116610:intron 35.0%
! TTCTGTCATTTGCTTGTGAA+TGG - chr1_3:35680462-35680481 Msa0116610:CDS 35.0%
! CTTGTGAATGGAAAGTATGA+TGG - chr1_3:35680474-35680493 Msa0116610:CDS 35.0%
GACATCCAGAACATATATAC+AGG + chr1_3:35680547-35680566 None:intergenic 35.0%
!! TGTGCATGAACTTTAGCTTT+AGG - chr1_3:35680652-35680671 Msa0116610:intron 35.0%
!! GTGCATGAACTTTAGCTTTA+GGG - chr1_3:35680653-35680672 Msa0116610:intron 35.0%
TTCTACTATAGGTGCTAAGT+TGG - chr1_3:35680825-35680844 Msa0116610:intron 35.0%
!! GTGCTAAGTTGGTAGAAAAT+AGG - chr1_3:35680836-35680855 Msa0116610:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr1_3:35680845-35680864 Msa0116610:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr1_3:35680850-35680869 Msa0116610:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr1_3:35680906-35680925 Msa0116610:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr1_3:35680999-35681018 Msa0116610:CDS 35.0%
ATGCATCTTTAATAAAGCGG+AGG - chr1_3:35681154-35681173 Msa0116610:intron 35.0%
!! ATAGTAGAAGTTTTGTCCCT+TGG - chr1_3:35681190-35681209 Msa0116610:intron 35.0%
TTTCCTCTGTCTTTCATTAG+TGG - chr1_3:35681357-35681376 Msa0116610:CDS 35.0%
GAACAGAGTTGTAATAGTTC+TGG - chr1_3:35681457-35681476 Msa0116610:intron 35.0%
! AGTTCTGGTATAACTCTTCA+TGG - chr1_3:35681472-35681491 Msa0116610:intron 35.0%
ATCCTGCTGATATTTACAGA+TGG + chr1_3:35681634-35681653 None:intergenic 35.0%
TCTGTAAATATCAGCAGGAT+AGG - chr1_3:35681634-35681653 Msa0116610:intron 35.0%
TGTTGAGTTCAAGAATCCTA+TGG - chr1_3:35681660-35681679 Msa0116610:intron 35.0%
TATGGTATTTGACCCTAGTA+GGG - chr1_3:35681678-35681697 Msa0116610:intron 35.0%
! GAATAGTACACCTTTTAACC+TGG - chr1_3:35681720-35681739 Msa0116610:intron 35.0%
! ATAGTACACCTTTTAACCTG+GGG - chr1_3:35681722-35681741 Msa0116610:intron 35.0%
GTTCTATAAGCATCACTTTG+AGG + chr1_3:35681871-35681890 None:intergenic 35.0%
GAATGCAGTTGTTCAGAAAA+TGG + chr1_3:35681931-35681950 None:intergenic 35.0%
TTCTTGGTTCAAATAACCAG+TGG - chr1_3:35681971-35681990 Msa0116610:intron 35.0%
TCTTGGTTCAAATAACCAGT+GGG - chr1_3:35681972-35681991 Msa0116610:intron 35.0%
TCAATACTTCAGACATAGAC+AGG + chr1_3:35682029-35682048 None:intergenic 35.0%
TTTCCCTTCAATGCACTAAT+AGG - chr1_3:35682169-35682188 Msa0116610:intron 35.0%
CACAATTTCAGCCACATAAA+GGG + chr1_3:35682245-35682264 None:intergenic 35.0%
ACACAATTTCAGCCACATAA+AGG + chr1_3:35682246-35682265 None:intergenic 35.0%
TTTATGTGGCTGAAATTGTG+TGG - chr1_3:35682245-35682264 Msa0116610:intron 35.0%
! CAGATTTGAAACAAGTCTCA+AGG + chr1_3:35682284-35682303 None:intergenic 35.0%
GTCACAATTATGCCATCAAA+TGG - chr1_3:35682331-35682350 Msa0116610:intron 35.0%
TTATGCCATCAAATGGTCAA+CGG - chr1_3:35682338-35682357 Msa0116610:intron 35.0%
!! CGATGTCAACTTTTTCTATG+GGG - chr1_3:35682452-35682471 Msa0116610:intron 35.0%
! TTTTCTATGGGGTAAATGTC+AGG - chr1_3:35682463-35682482 Msa0116610:intron 35.0%
! TTCAAAAGGGAAAGTACAAG+TGG + chr1_3:35682601-35682620 None:intergenic 35.0%
TTAGGGCAGAGATTTCAAAA+GGG + chr1_3:35682614-35682633 None:intergenic 35.0%
TGGGAAATTCATGCTATGAA+TGG - chr1_3:35682786-35682805 Msa0116610:intron 35.0%
CATGCTATGAATGGTGAAAT+AGG - chr1_3:35682795-35682814 Msa0116610:intron 35.0%
AGAAAAGCTTACACTGAGAG+CGG + chr1_3:35674703-35674722 None:intergenic 40.0%
GAATCTCGAAATGAGGGTTA+GGG + chr1_3:35674733-35674752 None:intergenic 40.0%
AGAATCTCGAAATGAGGGTT+AGG + chr1_3:35674734-35674753 None:intergenic 40.0%
!!! TTGCCGTCATTTTTTGTGAC+TGG - chr1_3:35675102-35675121 Msa0116610:intron 40.0%
TTTGGACCAATGAGTTTCAC+TGG - chr1_3:35675218-35675237 Msa0116610:three_prime_UTR 40.0%
CCATAACCAGTGAAACTCAT+TGG + chr1_3:35675227-35675246 None:intergenic 40.0%
! CCAATGAGTTTCACTGGTTA+TGG - chr1_3:35675224-35675243 Msa0116610:three_prime_UTR 40.0%
TATTGTGTAGCTGAATACCG+TGG - chr1_3:35675496-35675515 Msa0116610:exon 40.0%
CTGAATACCGTGGAGAAAAA+TGG - chr1_3:35675506-35675525 Msa0116610:CDS 40.0%
TCCATCTCTTCGGTACATAT+CGG + chr1_3:35675555-35675574 None:intergenic 40.0%
ACAAAAGCAACCCACCAAAT+AGG + chr1_3:35675884-35675903 None:intergenic 40.0%
AACTGTCGAAGGTTGAGTTA+TGG - chr1_3:35676122-35676141 Msa0116610:intron 40.0%
AGCCTAAATCATCAGATGGA+AGG - chr1_3:35676262-35676281 Msa0116610:intron 40.0%
AACTCACATCTTCATCTGCA+AGG + chr1_3:35676353-35676372 None:intergenic 40.0%
TGTTGCTAGATGTAACTGTG+TGG - chr1_3:35676397-35676416 Msa0116610:intron 40.0%
! GTACTTTGGAAGGTATGGAA+AGG - chr1_3:35676540-35676559 Msa0116610:intron 40.0%
!! CACCAAAGTGTTGTTCAAGT+AGG - chr1_3:35676663-35676682 Msa0116610:intron 40.0%
GAAGGTAGATCATTGAGGTA+AGG - chr1_3:35676876-35676895 Msa0116610:intron 40.0%
!! GGGTGGTTATTTTCATTTGC+AGG - chr1_3:35676954-35676973 Msa0116610:intron 40.0%
!! TTCATTTGCAGGGCTTGTTT+TGG - chr1_3:35676965-35676984 Msa0116610:intron 40.0%
CCATGCATGACAATACTTTG+TGG + chr1_3:35676993-35677012 None:intergenic 40.0%
!! CCACAAAGTATTGTCATGCA+TGG - chr1_3:35676990-35677009 Msa0116610:intron 40.0%
ACAACACAAAAAGGGAATCC+AGG + chr1_3:35677354-35677373 None:intergenic 40.0%
TTCAGGCGACAACACAAAAA+GGG + chr1_3:35677362-35677381 None:intergenic 40.0%
ATACAGCGGAAAGGAAAACA+GGG + chr1_3:35677467-35677486 None:intergenic 40.0%
ATGTGAGGAACCTACTACTA+TGG + chr1_3:35677501-35677520 None:intergenic 40.0%
AAACAGTCTCTATTGCTGCA+AGG + chr1_3:35677551-35677570 None:intergenic 40.0%
AAAGAGGTCATACAGAAGGA+AGG + chr1_3:35677958-35677977 None:intergenic 40.0%
AGTAGGGTCCTACAAATCAT+TGG - chr1_3:35678110-35678129 Msa0116610:CDS 40.0%
! ACATGTTTAGGATCATCTGG+TGG + chr1_3:35678182-35678201 None:intergenic 40.0%
GTGGCTGATGATACATGTTT+AGG + chr1_3:35678194-35678213 None:intergenic 40.0%
! ACTTTTGGACACTACTTTGG+TGG + chr1_3:35678213-35678232 None:intergenic 40.0%
AAAGAATCCGGTTCAAGCAA+TGG - chr1_3:35678397-35678416 Msa0116610:CDS 40.0%
!!! TAGTGTGAACGCTGACTTTT+TGG - chr1_3:35678675-35678694 Msa0116610:CDS 40.0%
TGGTATATTGTACTAGGGCA+AGG - chr1_3:35678695-35678714 Msa0116610:CDS 40.0%
AGGTACAGATACACTATTGG+TGG + chr1_3:35678902-35678921 None:intergenic 40.0%
GTTACTGTGACGAAACTTTC+TGG - chr1_3:35678988-35679007 Msa0116610:intron 40.0%
! CTAACAAGGCAGTTTCAAGT+CGG - chr1_3:35679130-35679149 Msa0116610:intron 40.0%
! TAACAAGGCAGTTTCAAGTC+GGG - chr1_3:35679131-35679150 Msa0116610:intron 40.0%
ATGCTTCCCTAAAGAGGAAT+CGG + chr1_3:35679265-35679284 None:intergenic 40.0%
ATGCAAATGCTTCCCTAAAG+AGG + chr1_3:35679271-35679290 None:intergenic 40.0%
TAAATTATCGCTGCCTTTGC+CGG + chr1_3:35679394-35679413 None:intergenic 40.0%
ACAATGAGGTGAATAATGCC+TGG + chr1_3:35679421-35679440 None:intergenic 40.0%
! CTTAGATTCTGAGGACAATG+AGG + chr1_3:35679435-35679454 None:intergenic 40.0%
!! CTTGATTGGCTTAGATTCTG+AGG + chr1_3:35679444-35679463 None:intergenic 40.0%
! GATTTTCCTGCTTCAGATGA+TGG + chr1_3:35679467-35679486 None:intergenic 40.0%
AACAAGGTTTCTTCAGACGT+CGG - chr1_3:35679597-35679616 Msa0116610:intron 40.0%
!! TGTCTTTGGAACTAGATGCA+TGG - chr1_3:35679646-35679665 Msa0116610:intron 40.0%
!! GTCTTTGGAACTAGATGCAT+GGG - chr1_3:35679647-35679666 Msa0116610:intron 40.0%
TCCAAGACAATAATCAGTCC+AGG - chr1_3:35679745-35679764 Msa0116610:intron 40.0%
ACCTGGACTGATTATTGTCT+TGG + chr1_3:35679749-35679768 None:intergenic 40.0%
! GGAATCATTTTGTCTGGCAA+AGG + chr1_3:35679775-35679794 None:intergenic 40.0%
TTGCTGGACATGATCCTAAA+GGG - chr1_3:35679832-35679851 Msa0116610:intron 40.0%
CCAGATGCATAATTCCCTTT+AGG + chr1_3:35679849-35679868 None:intergenic 40.0%
CCTAAAGGGAATTATGCATC+TGG - chr1_3:35679846-35679865 Msa0116610:intron 40.0%
AAAGGGAATTATGCATCTGG+TGG - chr1_3:35679849-35679868 Msa0116610:intron 40.0%
TATGCATCTGGTGGTTGTAA+TGG - chr1_3:35679858-35679877 Msa0116610:intron 40.0%
GATAGCACAGAATTGCTTGA+TGG + chr1_3:35679924-35679943 None:intergenic 40.0%
! TCATGATGCCAGTTTTCTTG+TGG - chr1_3:35680163-35680182 Msa0116610:intron 40.0%
GTACAGTTGAGGTCCTTAAT+TGG + chr1_3:35680714-35680733 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr1_3:35680893-35680912 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_3:35680931-35680950 Msa0116610:intron 40.0%
ATAAAGCGGAGGTTCTTAGT+TGG - chr1_3:35681165-35681184 Msa0116610:intron 40.0%
ACTTGATATGTCACAGACAC+AGG + chr1_3:35681261-35681280 None:intergenic 40.0%
TTGCCACTAATGAAAGACAG+AGG + chr1_3:35681363-35681382 None:intergenic 40.0%
CTGCTGATATTTACAGATGG+AGG + chr1_3:35681631-35681650 None:intergenic 40.0%
CTCCATCTGTAAATATCAGC+AGG - chr1_3:35681629-35681648 Msa0116610:intron 40.0%
CTACTAGGGTCAAATACCAT+AGG + chr1_3:35681679-35681698 None:intergenic 40.0%
CTATGGTATTTGACCCTAGT+AGG - chr1_3:35681677-35681696 Msa0116610:intron 40.0%
ATGGTATTTGACCCTAGTAG+GGG - chr1_3:35681679-35681698 Msa0116610:intron 40.0%
TCTTCATTGCGACTGAATTG+AGG + chr1_3:35681760-35681779 None:intergenic 40.0%
CTTGGTTCAAATAACCAGTG+GGG - chr1_3:35681973-35681992 Msa0116610:intron 40.0%
AGACAGGCCACTGAAATAAT+TGG + chr1_3:35682013-35682032 None:intergenic 40.0%
GAGCCTATTAGTGCATTGAA+GGG + chr1_3:35682175-35682194 None:intergenic 40.0%
AGAGCCTATTAGTGCATTGA+AGG + chr1_3:35682176-35682195 None:intergenic 40.0%
GAAGCTAAGCAAACAAGAGT+GGG + chr1_3:35682373-35682392 None:intergenic 40.0%
TGAAGCTAAGCAAACAAGAG+TGG + chr1_3:35682374-35682393 None:intergenic 40.0%
AATCTGGGTCCTATGCATTA+CGG - chr1_3:35682408-35682427 Msa0116610:intron 40.0%
TTACGGTTGTCAGACATAAC+TGG - chr1_3:35682425-35682444 Msa0116610:intron 40.0%
TGTGTGCTAACATACATAGC+AGG - chr1_3:35682553-35682572 Msa0116610:intron 40.0%
TGCTAACATACATAGCAGGA+TGG - chr1_3:35682557-35682576 Msa0116610:intron 40.0%
CTTAGGGCAGAGATTTCAAA+AGG + chr1_3:35682615-35682634 None:intergenic 40.0%
ATCGAAGTTATAGGCCTTAC+TGG - chr1_3:35682763-35682782 Msa0116610:intron 40.0%
AAGTTATAGGCCTTACTGGT+GGG - chr1_3:35682767-35682786 Msa0116610:intron 40.0%
! GAATAACGGAATACCGAGTT+TGG + chr1_3:35682876-35682895 None:intergenic 40.0%
GTGAGTGAATGAGAGAGAGA+AGG + chr1_3:35674631-35674650 None:intergenic 45.0%
TCGAAATGAGGGTTAGGGTT+TGG + chr1_3:35674728-35674747 None:intergenic 45.0%
GGTTATGGTGCATTCTGAGT+AGG - chr1_3:35675239-35675258 Msa0116610:three_prime_UTR 45.0%
! TGTGCAGCTTTTGTCATTGG+TGG - chr1_3:35675339-35675358 Msa0116610:three_prime_UTR 45.0%
!! TTGTCGCCCATTTTTCTCCA+CGG + chr1_3:35675516-35675535 None:intergenic 45.0%
TGGAGAAAAATGGGCGACAA+AGG - chr1_3:35675516-35675535 Msa0116610:CDS 45.0%
AGAAAAATGGGCGACAAAGG+AGG - chr1_3:35675519-35675538 Msa0116610:CDS 45.0%
GAAAAATGGGCGACAAAGGA+GGG - chr1_3:35675520-35675539 Msa0116610:CDS 45.0%
TCCGATATGTACCGAAGAGA+TGG - chr1_3:35675551-35675570 Msa0116610:CDS 45.0%
ATCAGTCAGGTCCATCTCTT+CGG + chr1_3:35675565-35675584 None:intergenic 45.0%
ACCTCATAGCCACATTTGCA+CGG + chr1_3:35675600-35675619 None:intergenic 45.0%
CACAGATCTGTGTATGGTGT+TGG - chr1_3:35676000-35676019 Msa0116610:CDS 45.0%
GCTCATAAGGATGAAACCGA+GGG - chr1_3:35676041-35676060 Msa0116610:intron 45.0%
TTTGTCATAAGGTGAACGGC+AGG + chr1_3:35676078-35676097 None:intergenic 45.0%
CAAAGAACGCATTGTGGCAA+TGG - chr1_3:35676094-35676113 Msa0116610:intron 45.0%
CTTGCCTTGCTTTAGCAGAT+TGG - chr1_3:35676200-35676219 Msa0116610:CDS 45.0%
GCAACCAATCTGCTAAAGCA+AGG + chr1_3:35676207-35676226 None:intergenic 45.0%
CGCAACCTCGTGTACATAAT+TGG - chr1_3:35676315-35676334 Msa0116610:intron 45.0%
GCAGTCCAATTATGTACACG+AGG + chr1_3:35676323-35676342 None:intergenic 45.0%
TCTTCATCTGCAAGGTGAAG+AGG + chr1_3:35676345-35676364 None:intergenic 45.0%
GTAACTGTGTGGAGCATGAA+AGG - chr1_3:35676408-35676427 Msa0116610:intron 45.0%
!! CTTCAACGTAGGGAGTACTT+TGG - chr1_3:35676526-35676545 Msa0116610:intron 45.0%
!! AACGTAGGGAGTACTTTGGA+AGG - chr1_3:35676530-35676549 Msa0116610:intron 45.0%
!! AGGGAGTACTTTGGAAGGTA+TGG - chr1_3:35676535-35676554 Msa0116610:intron 45.0%
GTCGATATCTCGTACAGCAA+CGG - chr1_3:35676573-35676592 Msa0116610:intron 45.0%
TCGATATCTCGTACAGCAAC+GGG - chr1_3:35676574-35676593 Msa0116610:intron 45.0%
CAACGAATGCAAAACAGCCA+AGG + chr1_3:35676768-35676787 None:intergenic 45.0%
! TGATTGGGTTGTTACTTGCG+AGG - chr1_3:35676910-35676929 Msa0116610:intron 45.0%
!!! CGTGATTTTGTGATGATGGG+TGG - chr1_3:35676937-35676956 Msa0116610:intron 45.0%
TCATGCATGGCTCAGAAATG+TGG - chr1_3:35677003-35677022 Msa0116610:intron 45.0%
!! ATTTTGGCACTGCTTCCTAC+TGG + chr1_3:35677165-35677184 None:intergenic 45.0%
AGTCGGTAAAGCAGAGTGAA+GGG + chr1_3:35677249-35677268 None:intergenic 45.0%
AAGTCGGTAAAGCAGAGTGA+AGG + chr1_3:35677250-35677269 None:intergenic 45.0%
!! ACTCTGCTTTACCGACTTGT+AGG - chr1_3:35677252-35677271 Msa0116610:intron 45.0%
ACAAAAAGGGAATCCAGGCT+GGG + chr1_3:35677349-35677368 None:intergenic 45.0%
GTTCAGGCGACAACACAAAA+AGG + chr1_3:35677363-35677382 None:intergenic 45.0%
TACGCCTAGTGATGTACGTA+AGG + chr1_3:35677399-35677418 None:intergenic 45.0%
GTACATCACTAGGCGTATCT+TGG - chr1_3:35677402-35677421 Msa0116610:intron 45.0%
GATACAGCGGAAAGGAAAAC+AGG + chr1_3:35677468-35677487 None:intergenic 45.0%
GGTCAAAAGACAACTAGCTG+AGG + chr1_3:35677722-35677741 None:intergenic 45.0%
! TGTTTAGGATCATCTGGTGG+TGG + chr1_3:35678179-35678198 None:intergenic 45.0%
!! TGCAGGAAGTGCTGTTGAAT+TGG + chr1_3:35678428-35678447 None:intergenic 45.0%
! CAACCTAAAGCAGAAGCATG+CGG + chr1_3:35678582-35678601 None:intergenic 45.0%
TGTATCTGGCAGTCTTCCAA+AGG - chr1_3:35678720-35678739 Msa0116610:CDS 45.0%
AGTTCATCTTCATCACGTGC+TGG - chr1_3:35678748-35678767 Msa0116610:CDS 45.0%
! TTCATCACGTGCTGGTAATC+TGG - chr1_3:35678756-35678775 Msa0116610:CDS 45.0%
AACTTATTCAGCAGCTTCCG+TGG - chr1_3:35679032-35679051 Msa0116610:intron 45.0%
ACTTATTCAGCAGCTTCCGT+GGG - chr1_3:35679033-35679052 Msa0116610:intron 45.0%
! GTGCAACCTTTTCTTGACCA+AGG + chr1_3:35679059-35679078 None:intergenic 45.0%
AGGAAGCTTGTACTCACAGA+AGG + chr1_3:35679081-35679100 None:intergenic 45.0%
TTCTGTGAGTACAAGCTTCC+TGG - chr1_3:35679080-35679099 Msa0116610:intron 45.0%
AAAGAGGAATCGGTCGAGTT+AGG + chr1_3:35679255-35679274 None:intergenic 45.0%
! AACTCGACCGATTCCTCTTT+AGG - chr1_3:35679255-35679274 Msa0116610:intron 45.0%
! ACTCGACCGATTCCTCTTTA+GGG - chr1_3:35679256-35679275 Msa0116610:intron 45.0%
! ATTCAACCACACCAGCCTTT+TGG - chr1_3:35679316-35679335 Msa0116610:intron 45.0%
! TTCAACCACACCAGCCTTTT+GGG - chr1_3:35679317-35679336 Msa0116610:intron 45.0%
GACTGTGATCAACAACAACC+CGG - chr1_3:35679372-35679391 Msa0116610:intron 45.0%
AAATTATCGCTGCCTTTGCC+GGG + chr1_3:35679393-35679412 None:intergenic 45.0%
ATGAGGTGAATAATGCCTGG+AGG + chr1_3:35679418-35679437 None:intergenic 45.0%
! GCTTCAGATGATGGCTTGAT+TGG + chr1_3:35679458-35679477 None:intergenic 45.0%
! ATCAAGCCATCATCTGAAGC+AGG - chr1_3:35679458-35679477 Msa0116610:CDS 45.0%
AAGGCTTCCCTGAATGATTC+TGG + chr1_3:35679500-35679519 None:intergenic 45.0%
!! GGTGCTTTGAAGGATGTGTA+TGG + chr1_3:35679711-35679730 None:intergenic 45.0%
! TCTTGGATTTTGCGCAAAGC+AGG + chr1_3:35679732-35679751 None:intergenic 45.0%
TTGTCTGGCAAAGGAAAACC+TGG + chr1_3:35679766-35679785 None:intergenic 45.0%
GTTGCTGGACATGATCCTAA+AGG - chr1_3:35679831-35679850 Msa0116610:intron 45.0%
! TGCTTGATGGGAAAGCGTAT+GGG + chr1_3:35679911-35679930 None:intergenic 45.0%
! TTGCTTGATGGGAAAGCGTA+TGG + chr1_3:35679912-35679931 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr1_3:35680892-35680911 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr1_3:35680915-35680934 Msa0116610:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr1_3:35680925-35680944 Msa0116610:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_3:35681068-35681087 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_3:35681069-35681088 None:intergenic 45.0%
ATGTCAGACAGAATACCACC+TGG - chr1_3:35681415-35681434 Msa0116610:intron 45.0%
TGTCAGACAGAATACCACCT+GGG - chr1_3:35681416-35681435 Msa0116610:intron 45.0%
TGTGGCTGCAAATGTTCAAC+TGG + chr1_3:35681601-35681620 None:intergenic 45.0%
AAGGTTTGCCCCAGGTTAAA+AGG + chr1_3:35681733-35681752 None:intergenic 45.0%
GCGACTGAATTGAGGAAGTA+AGG + chr1_3:35681752-35681771 None:intergenic 45.0%
CAAATAACCAGTGGGGAAGT+TGG - chr1_3:35681980-35681999 Msa0116610:intron 45.0%
AATCATTCCAACTTCCCCAC+TGG + chr1_3:35681990-35682009 None:intergenic 45.0%
TGCACTAATAGGCTCTCAGA+TGG - chr1_3:35682180-35682199 Msa0116610:intron 45.0%
GATTGCCGTTGACCATTTGA+TGG + chr1_3:35682346-35682365 None:intergenic 45.0%
TAAGCAAACAAGAGTGGGTG+AGG + chr1_3:35682368-35682387 None:intergenic 45.0%
GTCTGACAACCGTAATGCAT+AGG + chr1_3:35682420-35682439 None:intergenic 45.0%
ACCATAATAACCGCCAAGGT+CGG + chr1_3:35682493-35682512 None:intergenic 45.0%
ACTCACCATAATAACCGCCA+AGG + chr1_3:35682497-35682516 None:intergenic 45.0%
GAAGTTATAGGCCTTACTGG+TGG - chr1_3:35682766-35682785 Msa0116610:intron 45.0%
GCATGAATTTCCCACCAGTA+AGG + chr1_3:35682780-35682799 None:intergenic 45.0%
GCTTCAGATGCTGATCAGTC+AGG + chr1_3:35675578-35675597 None:intergenic 50.0%
! CATCTGAAGCCGTGCAAATG+TGG - chr1_3:35675588-35675607 Msa0116610:CDS 50.0%
GGCTCATAAGGATGAAACCG+AGG - chr1_3:35676040-35676059 Msa0116610:intron 50.0%
CAATGGCAGCTAACTGTCGA+AGG - chr1_3:35676111-35676130 Msa0116610:intron 50.0%
GTCGAAGGTTGAGTTATGGC+TGG - chr1_3:35676126-35676145 Msa0116610:intron 50.0%
TCCACCAGCTACTTCAACGT+AGG - chr1_3:35676515-35676534 Msa0116610:intron 50.0%
CCACCAGCTACTTCAACGTA+GGG - chr1_3:35676516-35676535 Msa0116610:intron 50.0%
ACTCCCTACGTTGAAGTAGC+TGG + chr1_3:35676522-35676541 None:intergenic 50.0%
AAAAAGGGAATCCAGGCTGG+GGG + chr1_3:35677347-35677366 None:intergenic 50.0%
CAAAAAGGGAATCCAGGCTG+GGG + chr1_3:35677348-35677367 None:intergenic 50.0%
CACAAAAAGGGAATCCAGGC+TGG + chr1_3:35677350-35677369 None:intergenic 50.0%
AGTCTCTATTGCTGCAAGGC+TGG + chr1_3:35677547-35677566 None:intergenic 50.0%
GGAGGTAAAACACTCCCTGA+AGG + chr1_3:35678158-35678177 None:intergenic 50.0%
!! TTAGGATCATCTGGTGGTGG+AGG + chr1_3:35678176-35678195 None:intergenic 50.0%
CATTACCAAGAGTTGGCTGC+AGG + chr1_3:35678445-35678464 None:intergenic 50.0%
CTGCAGCCAACTCTTGGTAA+TGG - chr1_3:35678443-35678462 Msa0116610:CDS 50.0%
!!! CAGTACGGCTGCTGTTTTCA+TGG - chr1_3:35678510-35678529 Msa0116610:CDS 50.0%
!!! TACGGCTGCTGTTTTCATGG+TGG - chr1_3:35678513-35678532 Msa0116610:CDS 50.0%
TAGCCGCATGCTTCTGCTTT+AGG - chr1_3:35678576-35678595 Msa0116610:CDS 50.0%
ACTAGGGCAAGGTGTGTATC+TGG - chr1_3:35678706-35678725 Msa0116610:CDS 50.0%
! ATTGATTCCCAAACCCTGCC+AGG - chr1_3:35678802-35678821 Msa0116610:CDS 50.0%
TTGATTCCCAAACCCTGCCA+GGG - chr1_3:35678803-35678822 Msa0116610:CDS 50.0%
! CTTTTCTTGACCAAGGCCCA+CGG + chr1_3:35679052-35679071 None:intergenic 50.0%
! GTTTCAAGTCGGGATGTGCA+TGG - chr1_3:35679141-35679160 Msa0116610:intron 50.0%
GGATGTGCATGGCTCATGTT+CGG - chr1_3:35679152-35679171 Msa0116610:intron 50.0%
ATCTTCCCAAAAGGCTGGTG+TGG + chr1_3:35679325-35679344 None:intergenic 50.0%
GATCAACAACAACCCGGCAA+AGG - chr1_3:35679378-35679397 Msa0116610:intron 50.0%
GCAGCGATAATTTAGCCTCC+AGG - chr1_3:35679400-35679419 Msa0116610:CDS 50.0%
TTCTCTAATCCTGCCCCCAA+GGG + chr1_3:35679540-35679559 None:intergenic 50.0%
AGAGAAGACCGTGAAGAGTG+AGG - chr1_3:35679554-35679573 Msa0116610:intron 50.0%
GAGAAGACCGTGAAGAGTGA+GGG - chr1_3:35679555-35679574 Msa0116610:intron 50.0%
ACCAGTACCCTCACTCTTCA+CGG + chr1_3:35679565-35679584 None:intergenic 50.0%
! CAGCAATCATTTGGGGTTGC+TGG - chr1_3:35679816-35679835 Msa0116610:intron 50.0%
GCAGGATGCCACAAGAAAAC+TGG + chr1_3:35680174-35680193 None:intergenic 50.0%
AGGTTGGCACTGTACAGTTG+AGG + chr1_3:35680725-35680744 None:intergenic 50.0%
ACTAAGTGGGGTAGGCTACA+TGG + chr1_3:35681056-35681075 None:intergenic 50.0%
ATGTAGCCTACCCCACTTAG+TGG - chr1_3:35681055-35681074 Msa0116610:CDS 50.0%
TGTAGCCTACCCCACTTAGT+GGG - chr1_3:35681056-35681075 Msa0116610:CDS 50.0%
CTTATCCCACTAAGTGGGGT+AGG + chr1_3:35681064-35681083 None:intergenic 50.0%
CTACCCCACTTAGTGGGATA+AGG - chr1_3:35681062-35681081 Msa0116610:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_3:35681070-35681089 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_3:35681067-35681086 Msa0116610:CDS 50.0%
CTCATGCTTCAAGTCCACCT+GGG - chr1_3:35681386-35681405 Msa0116610:intron 50.0%
TCTGACATTGCAAACCCAGG+TGG + chr1_3:35681403-35681422 None:intergenic 50.0%
CTGTCTGACATTGCAAACCC+AGG + chr1_3:35681406-35681425 None:intergenic 50.0%
! ATACCACCTGGGTTTTCTCG+CGG - chr1_3:35681427-35681446 Msa0116610:intron 50.0%
! ACAGATGGAGGAGCATACTG+TGG + chr1_3:35681619-35681638 None:intergenic 50.0%
TGACCCTAGTAGGGGAATAG+TGG - chr1_3:35681687-35681706 Msa0116610:intron 50.0%
CCTCCACTATTCCCCTACTA+GGG + chr1_3:35681693-35681712 None:intergenic 50.0%
TCCTCCACTATTCCCCTACT+AGG + chr1_3:35681694-35681713 None:intergenic 50.0%
! GTAGGGGAATAGTGGAGGAA+AGG - chr1_3:35681695-35681714 Msa0116610:intron 50.0%
GCTGAAATTGTGTGGCAGTC+TGG - chr1_3:35682253-35682272 Msa0116610:intron 50.0%
TTAGCTTCACTGCCAAGCAC+TGG - chr1_3:35682385-35682404 Msa0116610:intron 50.0%
!! ACTGCCAAGCACTGGAATCT+GGG - chr1_3:35682393-35682412 Msa0116610:intron 50.0%
! CAAGTGGATTTCGCAAGTGC+TGG + chr1_3:35682585-35682604 None:intergenic 50.0%
TGAGAGCGGAGAAGAGAGAG+TGG + chr1_3:35674689-35674708 None:intergenic 55.0%
GCCGTGCAAATGTGGCTATG+AGG - chr1_3:35675596-35675615 Msa0116610:CDS 55.0%
TCATAAGGTGAACGGCAGGC+AGG + chr1_3:35676074-35676093 None:intergenic 55.0%
CCCTACGTTGAAGTAGCTGG+TGG + chr1_3:35676519-35676538 None:intergenic 55.0%
GGCAGCTCCATTGCTTGAAC+CGG + chr1_3:35678407-35678426 None:intergenic 55.0%
CACTTCCTGCAGCCAACTCT+TGG - chr1_3:35678437-35678456 Msa0116610:CDS 55.0%
TGATTCCCAAACCCTGCCAG+GGG - chr1_3:35678804-35678823 Msa0116610:CDS 55.0%
CGTGGGCCTTGGTCAAGAAA+AGG - chr1_3:35679050-35679069 Msa0116610:intron 55.0%
TTTACTGAACCCTTGGGGGC+AGG - chr1_3:35679528-35679547 Msa0116610:intron 55.0%
CTTCTCTAATCCTGCCCCCA+AGG + chr1_3:35679541-35679560 None:intergenic 55.0%
! ACCGTGAAGAGTGAGGGTAC+TGG - chr1_3:35679561-35679580 Msa0116610:intron 55.0%
GCGCAAAGCAGGTGCTTTGA+AGG + chr1_3:35679721-35679740 None:intergenic 55.0%
GCTCATGCTTCAAGTCCACC+TGG - chr1_3:35681385-35681404 Msa0116610:intron 55.0%
! TACCACCTGGGTTTTCTCGC+GGG - chr1_3:35681428-35681447 Msa0116610:intron 55.0%
CCCTAGTAGGGGAATAGTGG+AGG - chr1_3:35681690-35681709 Msa0116610:intron 55.0%
GAGGAAGTAAGGTTTGCCCC+AGG + chr1_3:35681741-35681760 None:intergenic 55.0%
!! CACTGCCAAGCACTGGAATC+TGG - chr1_3:35682392-35682411 Msa0116610:intron 55.0%
AGGACCCAGATTCCAGTGCT+TGG + chr1_3:35682400-35682419 None:intergenic 55.0%
AATGTCAGGAGAGCCGACCT+TGG - chr1_3:35682477-35682496 Msa0116610:intron 55.0%
GCCGACCTTGGCGGTTATTA+TGG - chr1_3:35682489-35682508 Msa0116610:intron 55.0%
CGGAGAAGAGAGAGTGGTGG+TGG + chr1_3:35674683-35674702 None:intergenic 60.0%
GAGCGGAGAAGAGAGAGTGG+TGG + chr1_3:35674686-35674705 None:intergenic 60.0%
GTGAACGGCAGGCAGGACAA+CGG + chr1_3:35676067-35676086 None:intergenic 60.0%
CATGTGGTGCGGTGATCTCC+AGG + chr1_3:35679101-35679120 None:intergenic 60.0%
ACTCTCCCGCGAGAAAACCC+AGG + chr1_3:35681436-35681455 None:intergenic 60.0%
GGCTCTCAGATGGCAGTGTG+TGG - chr1_3:35682190-35682209 Msa0116610:intron 60.0%
GGTCAACTATGCCCCCAGCC+TGG - chr1_3:35677333-35677352 Msa0116610:intron 65.0%
AGCAGCCCCTGGCAGGGTTT+GGG + chr1_3:35678812-35678831 None:intergenic 65.0%
AAGCAGCCCCTGGCAGGGTT+TGG + chr1_3:35678813-35678832 None:intergenic 65.0%
! CTTTCGGTGCAAGCAGCCCC+TGG + chr1_3:35678823-35678842 None:intergenic 65.0%
CAGGGGCTGCTTGCACCGAA+AGG - chr1_3:35678821-35678840 Msa0116610:CDS 65.0%
TCAGCAGCTTCCGTGGGCCT+TGG - chr1_3:35679039-35679058 Msa0116610:intron 65.0%
CTCCCGCGAGAAAACCCAGG+TGG + chr1_3:35681433-35681452 None:intergenic 65.0%
GTCAGGAGAGCCGACCTTGG+CGG - chr1_3:35682480-35682499 Msa0116610:intron 65.0%
GCAGGCAGGACAACGGCCCT+CGG + chr1_3:35676060-35676079 None:intergenic 70.0%
GGTGCAAGCAGCCCCTGGCA+GGG + chr1_3:35678818-35678837 None:intergenic 70.0%
CGGTGCAAGCAGCCCCTGGC+AGG + chr1_3:35678819-35678838 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 35674597 35683024 35674597 ID=Msa0116610;Name=Msa0116610
chr1_3 mRNA 35674597 35683024 35674597 ID=Msa0116610-mRNA-1;Parent=Msa0116610;Name=Msa0116610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=133|0.84|0.85|1|0.69|0.71|14|699|931
chr1_3 exon 35674597 35674904 35674597 ID=Msa0116610-mRNA-1:exon:11508;Parent=Msa0116610-mRNA-1
chr1_3 exon 35675111 35676019 35675111 ID=Msa0116610-mRNA-1:exon:11507;Parent=Msa0116610-mRNA-1
chr1_3 exon 35676143 35676244 35676143 ID=Msa0116610-mRNA-1:exon:11506;Parent=Msa0116610-mRNA-1
chr1_3 exon 35677631 35678910 35677631 ID=Msa0116610-mRNA-1:exon:11505;Parent=Msa0116610-mRNA-1
chr1_3 exon 35679163 35679233 35679163 ID=Msa0116610-mRNA-1:exon:11504;Parent=Msa0116610-mRNA-1
chr1_3 exon 35679380 35679512 35679380 ID=Msa0116610-mRNA-1:exon:11503;Parent=Msa0116610-mRNA-1
chr1_3 exon 35680422 35680501 35680422 ID=Msa0116610-mRNA-1:exon:11502;Parent=Msa0116610-mRNA-1
chr1_3 exon 35680597 35680645 35680597 ID=Msa0116610-mRNA-1:exon:11501;Parent=Msa0116610-mRNA-1
chr1_3 exon 35680729 35680812 35680729 ID=Msa0116610-mRNA-1:exon:11500;Parent=Msa0116610-mRNA-1
chr1_3 exon 35680989 35681098 35680989 ID=Msa0116610-mRNA-1:exon:11499;Parent=Msa0116610-mRNA-1
chr1_3 exon 35681256 35681403 35681256 ID=Msa0116610-mRNA-1:exon:11498;Parent=Msa0116610-mRNA-1
chr1_3 exon 35681489 35681616 35681489 ID=Msa0116610-mRNA-1:exon:11497;Parent=Msa0116610-mRNA-1
chr1_3 exon 35682004 35682115 35682004 ID=Msa0116610-mRNA-1:exon:11496;Parent=Msa0116610-mRNA-1
chr1_3 exon 35682911 35683024 35682911 ID=Msa0116610-mRNA-1:exon:11495;Parent=Msa0116610-mRNA-1
chr1_3 five_prime_UTR 35682911 35683024 35682911 ID=Msa0116610-mRNA-1:five_prime_utr;Parent=Msa0116610-mRNA-1
chr1_3 five_prime_UTR 35682097 35682115 35682097 ID=Msa0116610-mRNA-1:five_prime_utr;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35682004 35682096 35682004 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35681489 35681616 35681489 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35681256 35681403 35681256 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35680989 35681098 35680989 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35680729 35680812 35680729 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35680597 35680645 35680597 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35680422 35680501 35680422 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35679380 35679512 35679380 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35679163 35679233 35679163 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35677631 35678910 35677631 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35676143 35676244 35676143 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 CDS 35675502 35676019 35675502 ID=Msa0116610-mRNA-1:cds;Parent=Msa0116610-mRNA-1
chr1_3 three_prime_UTR 35675111 35675501 35675111 ID=Msa0116610-mRNA-1:three_prime_utr;Parent=Msa0116610-mRNA-1
chr1_3 three_prime_UTR 35674597 35674904 35674597 ID=Msa0116610-mRNA-1:three_prime_utr;Parent=Msa0116610-mRNA-1
Gene Sequence

>Msa0116610

ATGGGCGACAAAGGAGGGAAATCATGTCCGATATGTACCGAAGAGATGGACCTGACTGATCAGCATCTGAAGCCGTGCAAATGTGGCTATGAGATCTGTGTATGGTGTTGGCATCATATAATGGAAATGGCTCATAAGGATGAAACCGAGGGCCGTTGTCCTGCCTGCCGTTCACCTTATGACAAAGAACGCATTGTGGCAATGGCAGCTAACTGTCGAAGATTGGTTGCTGAAATGAATTCTAAAAAGAAAATACAGAAGTTAAAGCCTAAATCATCAGATGGAAGGAAACATCTTACTGATGTTAGAGTCATTCAGCGCAACCTCGTGTACATAATTGGACTGCCTCTTCACCTTGCAGATGAAGATCTACTTCAACGTAGGGAGTACTTTGGAAGGTATGGAAAGGTTTTGAAAGTGTCGATATCTCGTACAGCAACGGGCGTTATTCAACATTCTGCAAACAACATTTGCTGTGTGTATATAACTTACTCAAAAGAATCTGAAGCAGTTCGATGTATTCAATCAGTTCATTTTTTTGTACTAGAAGGTAGATCATTGAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCATGGCTCAGAAATGTGAATGGGTATATCTATAGTATTATTCCGGAAATAATTCTGGTACCAGTAGGAAGCAGTGCCAAAATCGTAGATTTACAAGAGAGTAGGGTCCTACAAATCATTGGTGCTACAAATAATTTGAATCGTCCTTCAGGGAGTGTTTTACCTCCACCACCAGATGATCCTAAACATGTATCATCAGCCACCAAAGTAGTGTCCAAAAGTTCTTTAGATAACCAGATTAAAGAATCCGGTTCAAGCAATGGAGCTGCCAATTCAACAGCACTTCCTGCAGCCAACTCTTGGGCAAGGTGTGTATCTGGCAGTCTTCCAAAGGATACTAGTTCATCTTCATCACGTGCTGGTAATCTGGTCAATAGAAAGATTGAAGCATCTATTGATTCCCAAACCCTGCCAGGGGCTGCTTGCACCGAAAGGTCTATTCTTGATACAAAAAAATCAGGGGAAGTTAAAGACAGCTCTGACGTGCATTCCACCAATAGTGTATCTGTACCTTCAGAGTTGAACAAACATCACATTGGTGGAAATTTTCAAACATGTGAGTCAATTGTTATCAATGAGGTTACTGTGACGAAACTTTCTGGCATTATTTTGTCTAACTGTGAAACTTATTCAGCAGCTTCCGTGGGCCTTGGTCAAGAAAAGGTTGCACCTTCTGTGAGTACAAGCTTCCTGGAGATCACCGCACCACATGATTTGAATACTAACAAGGCAGTTTCAAGTCGGGATGTGCATGGCTCATGTTCGGAGTTATCATCTGTTAGCATCAACAGTCATCTTGAAGATTCATATTTCACTCGGGATTCGGACAGAATACTTTTTACTCCTAACTCGACCGATTCCTCTTTAGGGAAGCATTTGCATCAAGATAATGAGTATTGTAAAGATCATTCAACCACACCAGCCTTTTGGGAAGATATAATTGTGGATGATATGCTAAACAAAGACTGTGATCAACAACAACCCGGCAAAGGCAGCGATAATTTAGCCTCCAGGCATTATTCACCTCATTGTCCTCAGAATCTAAGCCAATCAAGCCATCATCTGAAGCAGGAAAATCAAATTCGTAACCAGAATCATTCAGGGAAGCCTTCTGAATATTTTACTGAACCCTTGGGGGCAGGATTAGAGAAGACCGTGAAGAGTGAGGGTACTGGTTCAGATGTTGATAACAAGGTTTCTTCAGACGTCGGCGAAAACAACATTATATCTAACATTTTGTCTTTGGAACTAGATGCATGGGAAGATTCAATAGTTAAGTTGTTGGATGAAAGTGATGAGCCATACACATCCTTCAAAGCACCTGCTTTGCGCAAAATCCAAGACAATAATCAGTCCAGGTTTTCCTTTGCCAGACAAAATGATTCCTTGAATAAAACCTCTGATTTGCAGCAATCATTTGGGGTTGCTGGACATGATCCTAAAGGGAATTATGCATCTGGTGGTTGTAATGGAAACAAAGACATGTTCGCTGTGAAACACCCATACGCTTTCCCATCAAGCAATTCTGTGCTATCGGATAAATTTGATGGAAGTCTGTCTTTGGCGCCCTCTAAATTTTCCATGGCAAAAGCTCATGCTTCAAGTCCACCTGGGTTTGCAATGTCAGACAGAATACCACCTGGGTTTTCTCGCGGGAGAGTAGAACAGAGTTGTAATAGTTCTGTTGAACATTTGCAGCCACAGTATGCTCCTCCATCTGTAAATATCAGCAGGATAGGAAATGTTGAGTTCAAGAATCCTATGGTATTTGACCCTAGTAGGGGAATAGTGGAGGAAAGGCTGAATAGTACACCTTTTAACCTGGGGCAAACCTTACTTCCTCAATTCAGTCGCAATGAAGATGATGCTAGACTTAAGCTGTTAATACAACAACAATCTACAGCTTTGCAGAATTCAAGACTTTCAGATCATATTGGAAATAGGTTTTCACCTCAAAGTGATGCTTATAGAACTAATTCGAGGTTTCTCGATCAATTTCAGTCTAACACACCATTTTCTGAACAACTGCATTCTCAACAGTTCAGTAGTAATATTCTTGGTTCAAATAACCAGTGGGGAAGTTGGAATGATTCCAATTATTTCAGTGGCCTGTCTATGTCTGAAGTATTGAATAATGAAATAGGGGGATTCAACAATTTCATGCCTAGTTATGAGAATATCAAGTTTAAGCACCTGAATTGA
Protein sequence

>Msa0116610

MGDKGGKSCPICTEEMDLTDQHLKPCKCGYEICVWCWHHIMEMAHKDETEGRCPACRSPYDKERIVAMAANCRRLVAEMNSKKKIQKLKPKSSDGRKHLTDVRVIQRNLVYIIGLPLHLADEDLLQRREYFGRYGKVLKVSISRTATGVIQHSANNICCVYITYSKESEAVRCIQSVHFFVLEGRSLRACFGTTKYCHAWLRNVNGYIYSIIPEIILVPVGSSAKIVDLQESRVLQIIGATNNLNRPSGSVLPPPPDDPKHVSSATKVVSKSSLDNQIKESGSSNGAANSTALPAANSWARCVSGSLPKDTSSSSSRAGNLVNRKIEASIDSQTLPGAACTERSILDTKKSGEVKDSSDVHSTNSVSVPSELNKHHIGGNFQTCESIVINEVTVTKLSGIILSNCETYSAASVGLGQEKVAPSVSTSFLEITAPHDLNTNKAVSSRDVHGSCSELSSVSINSHLEDSYFTRDSDRILFTPNSTDSSLGKHLHQDNEYCKDHSTTPAFWEDIIVDDMLNKDCDQQQPGKGSDNLASRHYSPHCPQNLSQSSHHLKQENQIRNQNHSGKPSEYFTEPLGAGLEKTVKSEGTGSDVDNKVSSDVGENNIISNILSLELDAWEDSIVKLLDESDEPYTSFKAPALRKIQDNNQSRFSFARQNDSLNKTSDLQQSFGVAGHDPKGNYASGGCNGNKDMFAVKHPYAFPSSNSVLSDKFDGSLSLAPSKFSMAKAHASSPPGFAMSDRIPPGFSRGRVEQSCNSSVEHLQPQYAPPSVNISRIGNVEFKNPMVFDPSRGIVEERLNSTPFNLGQTLLPQFSRNEDDARLKLLIQQQSTALQNSRLSDHIGNRFSPQSDAYRTNSRFLDQFQSNTPFSEQLHSQQFSSNILGSNNQWGSWNDSNYFSGLSMSEVLNNEIGGFNNFMPSYENIKFKHLN*