AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116720 MtrunA17_Chr1g0181721 97.936 1502 29 2 1 1502 1 1500 0.0 3028
Msa0116720 MtrunA17_Chr4g0037101 48.696 690 301 9 912 1551 1195 1881 0.0 609
Msa0116720 MtrunA17_Chr4g0037101 37.004 781 420 8 97 810 175 950 1.90e-128 442
Msa0116720 MtrunA17_Chr7g0263641 50.000 452 145 7 919 1366 147 521 1.59e-126 405
Msa0116720 MtrunA17_Chr7g0263641 48.276 116 58 1 713 826 23 138 1.48e-26 116
Msa0116720 MtrunA17_Chr7g0263651 67.568 185 50 1 1377 1551 1 185 1.00e-80 263
Msa0116720 MtrunA17_Chr7g0263611 49.434 265 105 8 92 337 21 275 7.38e-63 216
Msa0116720 MtrunA17_Chr7g0263621 63.504 137 49 1 393 528 16 152 7.10e-46 162
Msa0116720 MtrunA17_Chr2g0293841 28.571 462 259 15 1102 1551 622 1024 3.60e-35 146
Msa0116720 MtrunA17_Chr3g0132611 28.750 400 238 10 1155 1548 3300 3658 9.67e-35 146
Msa0116720 MtrunA17_Chr5g0427791 28.607 402 236 11 1155 1548 3294 3652 1.52e-32 139
Msa0116720 MtrunA17_Chr4g0052561 28.678 401 231 12 1158 1548 3400 3755 4.57e-32 137
Msa0116720 MtrunA17_Chr4g0052551 28.250 400 234 12 1158 1548 3379 3734 8.14e-31 133
Msa0116720 MtrunA17_Chr7g0265431 26.596 470 263 13 1105 1551 738 1148 7.69e-27 119
Msa0116720 MtrunA17_Chr4g0075761 25.132 378 223 8 1181 1547 548 876 3.81e-19 94.4
Msa0116720 MtrunA17_Chr2g0289901 25.079 315 170 12 1264 1537 29 318 2.54e-17 85.1
Msa0116720 MtrunA17_Chr7g0263631 33.858 127 78 3 590 711 1 126 2.27e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116720 AT5G02880.1 54.528 1568 630 19 1 1551 1 1502 0.0 1556
Msa0116720 AT5G02880.2 53.975 1547 629 19 1 1530 1 1481 0.0 1516
Msa0116720 AT4G38600.3 48.547 688 293 9 918 1551 1208 1888 0.0 605
Msa0116720 AT4G38600.3 36.829 782 414 11 100 810 192 964 4.15e-133 456
Msa0116720 AT4G38600.1 48.547 688 293 9 918 1551 1208 1888 0.0 605
Msa0116720 AT4G38600.1 36.829 782 414 11 100 810 192 964 4.15e-133 456
Msa0116720 AT4G38600.2 48.110 688 293 10 918 1551 1117 1794 0.0 594
Msa0116720 AT4G38600.2 36.829 782 414 11 100 810 119 891 3.37e-133 455
Msa0116720 AT3G17205.1 28.139 462 261 13 1102 1551 627 1029 5.46e-36 149
Msa0116720 AT3G17205.3 28.139 462 261 13 1102 1551 627 1029 5.46e-36 149
Msa0116720 AT3G17205.2 28.139 462 261 13 1102 1551 613 1015 5.99e-36 149
Msa0116720 AT1G55860.1 27.545 501 286 17 1058 1548 3245 3678 9.83e-33 140
Msa0116720 AT1G70320.1 28.211 436 248 13 1130 1548 3268 3655 1.82e-32 139
Msa0116720 AT3G53090.1 30.864 324 178 7 1241 1551 852 1142 1.49e-29 129
Msa0116720 AT3G53090.2 30.864 324 178 7 1241 1551 852 1142 1.49e-29 129
Msa0116720 AT4G12570.1 24.185 368 219 12 1181 1537 540 858 2.74e-13 75.5

Find 361 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTACATTATAAATTAAT+TGG 0.108360 1_3:-35847690 None:intergenic
AGCCTGCAAGTTTGTCTTTA+TGG 0.127172 1_3:-35851682 None:intergenic
GCGTTGGCAGTATGCCTTTC+TGG 0.146304 1_3:+35851295 Msa0116720:CDS
GGCAGTTCATCTACCATTTC+TGG 0.157663 1_3:-35846381 None:intergenic
ACAGGAATCCATTCTCTTTA+TGG 0.164689 1_3:+35851711 Msa0116720:CDS
CTTGACTGGATCAGCTTATT+TGG 0.173323 1_3:+35855060 Msa0116720:three_prime_UTR
TTTATCACTTGGCCAATATA+TGG 0.187779 1_3:+35849765 Msa0116720:CDS
GCCTTCTATAAACTTATTCT+TGG 0.198719 1_3:+35851879 Msa0116720:CDS
CCTGATACTGTTCTTGCTTC+AGG 0.204370 1_3:+35852204 Msa0116720:CDS
CAAATTATGGACAAGCTTAT+TGG 0.211903 1_3:+35849679 Msa0116720:CDS
TAGAAGAAGATTGCATAATA+TGG 0.213469 1_3:-35847408 None:intergenic
GTCACAGCAAGTTGCTTTCT+TGG 0.217991 1_3:+35855158 Msa0116720:three_prime_UTR
CTTACAGGCAGGGGCAATTA+TGG 0.231409 1_3:+35847123 Msa0116720:CDS
TTTCTGGTGTAATCAGTTAT+TGG 0.236134 1_3:+35851311 Msa0116720:CDS
ATCATCTTCTTCAGGAATTC+AGG 0.237048 1_3:+35850546 Msa0116720:CDS
ATTGAGTGCAAAGAAGAAAA+AGG 0.254801 1_3:-35850114 None:intergenic
TTTGTTTGTTTGACCAAATC+TGG 0.262499 1_3:+35849034 Msa0116720:CDS
TTTGCACAGGTGTTTAATTC+TGG 0.267152 1_3:+35848965 Msa0116720:intron
ACAACCACTTGCTTGCTTAC+AGG 0.269423 1_3:+35847108 Msa0116720:CDS
TGTACGTTGCTCAGAATAAT+AGG 0.270713 1_3:-35849958 None:intergenic
AATTGAAGCGGTGGACTTTC+AGG 0.276996 1_3:-35850216 None:intergenic
CCCGTTTCACCTTGAAATAT+TGG 0.277617 1_3:-35849083 None:intergenic
TAGCAACAACTTGACCTAAA+AGG 0.279896 1_3:-35851812 None:intergenic
TCCAATGCTAGTTGATTATT+CGG 0.280130 1_3:-35848797 None:intergenic
TTTCTTGAAGTTATTTATAA+AGG 0.284298 1_3:+35849273 Msa0116720:CDS
AGATAATGTTGTTATCTATA+AGG 0.287139 1_3:+35846838 Msa0116720:CDS
TCACAGCAAGTTGCTTTCTT+GGG 0.290016 1_3:+35855159 Msa0116720:three_prime_UTR
ACACATCTCTTAAGTGTAAA+TGG 0.294828 1_3:+35847652 Msa0116720:CDS
TTTGTACAGTATTTAGTATT+GGG 0.305006 1_3:+35855316 Msa0116720:three_prime_UTR
TAGTGAACTTGTTTCTGATT+TGG 0.305509 1_3:+35851041 Msa0116720:CDS
CGCAGGGTTCGGTTTCCAAT+TGG 0.312562 1_3:+35846318 Msa0116720:intron
ACTCTATATCAGGCAATTCT+TGG 0.313246 1_3:+35850826 Msa0116720:CDS
ACCAGAAAGATCATCAAAAT+TGG 0.318013 1_3:+35849330 Msa0116720:CDS
CTTCACTGACTACAATTGTT+GGG 0.318568 1_3:+35855197 Msa0116720:three_prime_UTR
GCCTGATATAGAGTCAATTT+AGG 0.318810 1_3:-35850817 None:intergenic
TAGGGTACTGGATCAAATTA+TGG 0.322008 1_3:+35849666 Msa0116720:CDS
TCCAAGAATAAGTTTATAGA+AGG 0.323416 1_3:-35851880 None:intergenic
TGGGGAGTAGAAGCAATTAA+TGG 0.327149 1_3:+35846338 Msa0116720:exon
CCTTAACAAAACGTACTTTC+AGG 0.327563 1_3:-35850038 None:intergenic
AGTTTCAAGCACTAGTTAAC+AGG 0.335099 1_3:+35852070 Msa0116720:CDS
CTGATACTGTTCTTGCTTCA+GGG 0.335158 1_3:+35852205 Msa0116720:CDS
GCAGGGTTCGGTTTCCAATT+GGG 0.341089 1_3:+35846319 Msa0116720:intron
TCGTTTGCTACCGTTCCTAA+TGG 0.341445 1_3:+35849994 Msa0116720:CDS
CTCCACAAGCATGCCAGATT+TGG 0.343831 1_3:-35849047 None:intergenic
TTTGCTTGACAGGGTTTGAT+AGG 0.343922 1_3:+35847825 Msa0116720:intron
GAACAACGCTAGCAGGTAAA+TGG 0.344358 1_3:-35855356 None:intergenic
TGCTCACGAACTCATTTAGT+TGG 0.352397 1_3:-35851221 None:intergenic
TCCTAAATTGACTCTATATC+AGG 0.352943 1_3:+35850816 Msa0116720:CDS
CACTGGTCTTGGACCAACTT+TGG 0.353799 1_3:+35851584 Msa0116720:CDS
AGGTTTCACAGCTGCTCTAT+AGG 0.360588 1_3:-35850914 None:intergenic
CGGGATCAGTCGTAGCCTTC+AGG 0.360602 1_3:+35847868 Msa0116720:CDS
CCAAGCTTCTGCAGGAGATC+TGG 0.360951 1_3:-35848845 None:intergenic
TTCTCAGAATCATATAATTC+CGG 0.363354 1_3:-35849541 None:intergenic
AGAAAGCCCCACACCTTTCA+TGG 0.366588 1_3:+35847376 Msa0116720:CDS
CACCCCTTTCTATATTAATC+AGG 0.366699 1_3:+35849899 Msa0116720:CDS
GGTGTAATTATTAGGGTGAT+TGG 0.372397 1_3:+35855091 Msa0116720:three_prime_UTR
TAAATGGCTATTAATCATTA+AGG 0.375221 1_3:-35855340 None:intergenic
ATAGATAACAACATTATCTC+TGG 0.375506 1_3:-35846834 None:intergenic
AGTTTACCGCGACCGGATCT+TGG 0.377364 1_3:+35851485 Msa0116720:CDS
GCTGGGGAATCATCTTCTTC+AGG 0.379627 1_3:+35850538 Msa0116720:CDS
TACTTCAAACTGGCAGCATT+TGG 0.381453 1_3:+35851375 Msa0116720:CDS
TTAAGAACGCCAATATTTCA+AGG 0.382881 1_3:+35849074 Msa0116720:CDS
TTATCACTTGGCCAATATAT+GGG 0.385628 1_3:+35849766 Msa0116720:CDS
TCTCTGGCTCTTCCTCTGAA+TGG 0.387400 1_3:-35846539 None:intergenic
TACCATAAAGACAAACTTGC+AGG 0.388688 1_3:+35851680 Msa0116720:CDS
GATAATGTTGTTATCTATAA+GGG 0.388751 1_3:+35846839 Msa0116720:CDS
CCTGCTAGCGTTGTTCCCTT+TGG 0.390407 1_3:+35855363 Msa0116720:three_prime_UTR
TATAGAAGGCTTTAGAAAAG+TGG 0.391315 1_3:-35851866 None:intergenic
GAAGAAGTGGGCACTGGTCT+TGG 0.391848 1_3:+35851573 Msa0116720:CDS
ACACAGGACCTTGTATTTGA+TGG 0.392532 1_3:-35850240 None:intergenic
TCTTCAATCATCCTCTTCTC+TGG 0.393389 1_3:+35845259 Msa0116720:five_prime_UTR
CCTGAAGCAAGAACAGTATC+AGG 0.394520 1_3:-35852204 None:intergenic
GCTTACATTATAAATTAATT+GGG 0.396042 1_3:-35847689 None:intergenic
CTGGTTAAAGCCGGATTTGA+AGG 0.396606 1_3:-35852417 None:intergenic
ATGCAATCTTCTTCTATATG+AGG 0.398799 1_3:+35847415 Msa0116720:CDS
AATTGCTTCTACTCCCCAAT+TGG 0.398914 1_3:-35846333 None:intergenic
GCAACAGATGAGGGACTCTA+TGG 0.399457 1_3:+35851266 Msa0116720:CDS
TTGTTGGTGGACACTGTAAT+CGG 0.400693 1_3:+35847976 Msa0116720:CDS
AGGAAATTCTGAGTTGGAAC+AGG 0.403866 1_3:+35852119 Msa0116720:CDS
GGTCTAGGATGTGATGTCTT+TGG 0.403891 1_3:-35850493 None:intergenic
AAGACAAAGATCCTCAATTC+TGG 0.405489 1_3:-35852160 None:intergenic
TCTGTTTCTTCTTAAAAGCT+TGG 0.412107 1_3:+35851089 Msa0116720:CDS
ATTGGTAGCAATGTAGATAA+AGG 0.414810 1_3:+35855109 Msa0116720:three_prime_UTR
CCATCAGCTGAATCCTTCTC+TGG 0.415608 1_3:-35846555 None:intergenic
CAGATCTCCTGCAGAAGCTT+GGG 0.415893 1_3:+35848846 Msa0116720:CDS
ACTCAATTGAAAGATATCTA+TGG 0.416876 1_3:+35850130 Msa0116720:CDS
TTTGCGGAGAGAACGATTCT+TGG 0.417616 1_3:+35854271 Msa0116720:CDS
TTACCTTGAAGGACAACCTC+TGG 0.418065 1_3:+35850792 Msa0116720:CDS
TCTTCACTGACTACAATTGT+TGG 0.418381 1_3:+35855196 Msa0116720:three_prime_UTR
CCTGCACGTTCTGAGATTGC+TGG 0.419146 1_3:-35850273 None:intergenic
GCTGAGCGCACTGACTTCAT+TGG 0.424825 1_3:+35849927 Msa0116720:CDS
TGAAGGTAAAGTTGATAATC+TGG 0.429075 1_3:+35851170 Msa0116720:CDS
CATGACTTCATTCTCTTGAC+TGG 0.430780 1_3:+35855046 Msa0116720:exon
GAATTATATGATTCTGAGAA+AGG 0.434177 1_3:+35849544 Msa0116720:CDS
AGATCCTTGACCCTCTGTTA+TGG 0.436200 1_3:-35855013 None:intergenic
CTTCTTAATTATTTATCACT+TGG 0.436600 1_3:+35849754 Msa0116720:CDS
TAACTAGTTGCTAGCAGTGC+TGG 0.437225 1_3:+35855136 Msa0116720:three_prime_UTR
ACGAATACGGAGGTAGCTTA+AGG 0.440357 1_3:-35854856 None:intergenic
ATCATGTGATTCAGATGAAA+TGG 0.441384 1_3:+35846578 Msa0116720:CDS
AAGGTATAAAATTCCAAAGT+TGG 0.442534 1_3:-35851597 None:intergenic
CTTTAGAGATTCCAGAATTG+AGG 0.442539 1_3:+35852149 Msa0116720:CDS
TTCACATTGACTGCTTGATC+GGG 0.443383 1_3:-35850514 None:intergenic
GAGGTGTGCCGGTCACGAAC+TGG 0.444457 1_3:-35854621 None:intergenic
CTGTTTCTGCTTTATGTCAA+AGG 0.448199 1_3:+35846922 Msa0116720:CDS
ATGGACTCTTTCCTCGTCCA+TGG 0.448715 1_3:+35851730 Msa0116720:CDS
AACTTGCAGGCTGAGGAAAC+AGG 0.448741 1_3:+35851693 Msa0116720:CDS
AGGTCAAAAGCGTCCAGAAA+TGG 0.454675 1_3:+35846368 Msa0116720:CDS
GAGTTACAGAAGTCTGGTTC+GGG 0.454806 1_3:+35851630 Msa0116720:CDS
CCAGATCTCCTGCAGAAGCT+TGG 0.455365 1_3:+35848845 Msa0116720:CDS
AACAGTAAGTGACAGGCGAC+TGG 0.455428 1_3:+35851431 Msa0116720:CDS
TTCTGATGATGTAGGAGATT+GGG 0.456429 1_3:-35849446 None:intergenic
ATTCACATTGACTGCTTGAT+CGG 0.456516 1_3:-35850515 None:intergenic
GAATGAACTTCTCCCTGGCC+TGG 0.457614 1_3:+35848766 Msa0116720:CDS
TAAGGAACGGCACATCCATT+AGG 0.457643 1_3:-35850009 None:intergenic
TTGAGAGATGCCAATCCTCC+TGG 0.458208 1_3:-35854652 None:intergenic
TGCATGAAGAGAAGATCAAT+AGG 0.458937 1_3:+35849647 Msa0116720:CDS
TTGCGGAGAGAACGATTCTT+GGG 0.458952 1_3:+35854272 Msa0116720:CDS
GAACTTGAGCGTATACTTTG+CGG 0.459853 1_3:+35854255 Msa0116720:CDS
GGAGTTACAGAAGTCTGGTT+CGG 0.459957 1_3:+35851629 Msa0116720:CDS
AGAAGAAGATTGCATAATAT+GGG 0.461055 1_3:-35847407 None:intergenic
TTACTTGTCAAACTTTCATC+GGG 0.461212 1_3:+35847849 Msa0116720:CDS
ATCTTGCTTCAAAGCTGAAT+AGG 0.462435 1_3:-35851347 None:intergenic
AAGACGGAAGAAAACTTGTA+AGG 0.462689 1_3:-35845240 None:intergenic
CAGTAAGTTGACAGAGAAGC+TGG 0.464250 1_3:+35851242 Msa0116720:CDS
GAAAATCTGAAGATGTTCAA+TGG 0.464292 1_3:-35854223 None:intergenic
ATTACTTGTCAAACTTTCAT+CGG 0.465159 1_3:+35847848 Msa0116720:CDS
TAAGCATGGATTGATTCAAC+AGG 0.465195 1_3:+35847627 Msa0116720:CDS
AGTGGACAAACTGAACCTTC+TGG 0.465257 1_3:+35846687 Msa0116720:CDS
CTTCTGATGATGTAGGAGAT+TGG 0.465616 1_3:-35849447 None:intergenic
TTTCTTCTCAACAAGCATAC+AGG 0.466716 1_3:+35847165 Msa0116720:CDS
GATCCAGAGGTTGTCCTTCA+AGG 0.468009 1_3:-35850795 None:intergenic
TTGACTGCTTGATCGGGTCT+AGG 0.468019 1_3:-35850508 None:intergenic
TCCGAAGGCATTATGTCCTC+AGG 0.468713 1_3:-35850934 None:intergenic
GAAAGAGTCCATAAAGAGAA+TGG 0.468797 1_3:-35851719 None:intergenic
TGTGTTTCCCATGTTGATCC+AGG 0.470648 1_3:+35848874 Msa0116720:CDS
AAGAAAACTTGTAAGGGAAG+AGG 0.471692 1_3:-35845233 None:intergenic
CAGGGTTCGGTTTCCAATTG+GGG 0.471851 1_3:+35846320 Msa0116720:intron
CCACTTGCTTGCTTACAGGC+AGG 0.472378 1_3:+35847112 Msa0116720:CDS
GGGGAGTAGAAGCAATTAAT+GGG 0.473193 1_3:+35846339 Msa0116720:exon
CTATAAACTTATTCTTGGAA+AGG 0.474267 1_3:+35851884 Msa0116720:CDS
TATCCAGTGTCTTCAAGCAT+TGG 0.474555 1_3:+35847069 Msa0116720:intron
CAAGCAGTCAATGTGAATGC+TGG 0.474799 1_3:+35850520 Msa0116720:CDS
AAAATCTGAAGATGTTCAAT+GGG 0.474853 1_3:-35854222 None:intergenic
CAGAGACTATCGAGTGATCA+TGG 0.475475 1_3:+35846636 Msa0116720:CDS
TTCACTGACTACAATTGTTG+GGG 0.476116 1_3:+35855198 Msa0116720:three_prime_UTR
TGTCAGGAGTTACAGAAGTC+TGG 0.479773 1_3:+35851624 Msa0116720:CDS
CGATGTAAGTTCAACACAAT+CGG 0.479828 1_3:+35846470 Msa0116720:CDS
CTTGAAGTTATTTATAAAGG+AGG 0.480655 1_3:+35849276 Msa0116720:CDS
GTCTCTGTCTATGATATTCG+TGG 0.483373 1_3:-35846620 None:intergenic
CAGGTGGAAGCCTTCAAATC+CGG 0.484304 1_3:+35852407 Msa0116720:CDS
TCGGCTTCCTCCAGGAGGAT+TGG 0.487594 1_3:+35854642 Msa0116720:CDS
AGAAACAGAATATCATAAGT+TGG 0.490252 1_3:-35851075 None:intergenic
GTTGATGCAACTGTCAAGTC+TGG 0.490324 1_3:+35852374 Msa0116720:CDS
GATTCCTGATTAATATAGAA+AGG 0.490377 1_3:-35849903 None:intergenic
ACCTGAGGACATAATGCCTT+CGG 0.490897 1_3:+35850933 Msa0116720:CDS
TGGAGGAAGCCGAGGTGTGC+CGG 0.491431 1_3:-35854632 None:intergenic
CAAGAGAATGAAGTCATGAT+AGG 0.494168 1_3:-35855041 None:intergenic
TAGGTAGGTCTGTGTCTGCT+TGG 0.494170 1_3:-35854811 None:intergenic
TCCGAATAATCAACTAGCAT+TGG 0.494261 1_3:+35848796 Msa0116720:CDS
TGGTGTTAAGAGTGCCTCAA+TGG 0.495645 1_3:-35849311 None:intergenic
AAAAGTGTAACACAGGCACT+TGG 0.496525 1_3:-35849416 None:intergenic
TTCTGTCCTCTGTATAGAAA+CGG 0.497806 1_3:+35855259 Msa0116720:three_prime_UTR
ATTCCTGATTAATATAGAAA+GGG 0.497877 1_3:-35849902 None:intergenic
AAGATGCAAGTACTTCAAAC+TGG 0.497996 1_3:+35851365 Msa0116720:CDS
TTTCTTCTTAAAAGCTTGGA+AGG 0.499941 1_3:+35851093 Msa0116720:CDS
GGAAGTATCCATGTCATCAT+GGG 0.500695 1_3:-35846502 None:intergenic
CACAGCAAGTTGCTTTCTTG+GGG 0.501966 1_3:+35855160 Msa0116720:three_prime_UTR
GACTCTATGGCAGTCTGCGT+TGG 0.502622 1_3:+35851279 Msa0116720:CDS
TTGAAGTTATTTATAAAGGA+GGG 0.503425 1_3:+35849277 Msa0116720:CDS
ACAGCCTCCATGAAAGGTGT+GGG 0.503968 1_3:-35847383 None:intergenic
AAGCAGTCAATGTGAATGCT+GGG 0.505662 1_3:+35850521 Msa0116720:CDS
AACTGAACCTTCTGGTCAGT+TGG 0.508583 1_3:+35846695 Msa0116720:CDS
AGGAAGTATCCATGTCATCA+TGG 0.508828 1_3:-35846503 None:intergenic
GTATCAACGTCTCAGCTTGT+TGG 0.509233 1_3:+35847960 Msa0116720:CDS
CCAGAGAAGGATTCAGCTGA+TGG 0.509910 1_3:+35846555 Msa0116720:CDS
TGCAGTACCCTACCAAGCTC+AGG 0.510678 1_3:-35852045 None:intergenic
GGCACACCTCGGCTTCCTCC+AGG 0.511572 1_3:+35854634 Msa0116720:CDS
AGAAGTCTGGTTCGGGCATG+TGG 0.511577 1_3:+35851637 Msa0116720:CDS
TTCGCAGAGTTCAGTGAGTA+CGG 0.511720 1_3:-35846718 None:intergenic
CACTTGATCCTGAGCTTGGT+AGG 0.513265 1_3:+35852037 Msa0116720:CDS
AGAGAAGATCAATAGGGTAC+TGG 0.515205 1_3:+35849654 Msa0116720:CDS
GAGGATGAGAAATTATCATC+TGG 0.518325 1_3:+35850177 Msa0116720:CDS
GGAATGCTCGTCGTTGGCCA+TGG 0.520361 1_3:-35854597 None:intergenic
GACCAAATCTGGCATGCTTG+TGG 0.520594 1_3:+35849045 Msa0116720:CDS
CATCCATCCCAAGCTTCTGC+AGG 0.522550 1_3:-35848853 None:intergenic
CTTCAAATCCGGCTTTAACC+AGG 0.522768 1_3:+35852418 Msa0116720:CDS
GCATATTAAAACAAAATACT+TGG 0.524480 1_3:+35849516 Msa0116720:CDS
TTCAAGAACCACTTTATGAC+TGG 0.525002 1_3:-35851538 None:intergenic
TCGGATGAACTTTGTAAGCA+TGG 0.525137 1_3:+35847613 Msa0116720:CDS
TGTATCCTTACATTGACAAT+GGG 0.526252 1_3:-35854463 None:intergenic
GATCTGTATCCTCGATCAGC+TGG 0.526965 1_3:+35846879 Msa0116720:CDS
TATCACTTGGCCAATATATG+GGG 0.528827 1_3:+35849767 Msa0116720:CDS
GGGGAAAACAAGGGGATGCA+TGG 0.529152 1_3:+35849787 Msa0116720:CDS
TTGCTGAATGAACTTCTCCC+TGG 0.529652 1_3:+35848761 Msa0116720:CDS
CTGTGAAGGAAATTCTGAGT+TGG 0.530317 1_3:+35852113 Msa0116720:CDS
AGAAGCTGGAGCAACAGATG+AGG 0.530960 1_3:+35851256 Msa0116720:CDS
TTTGCAAGCTTTACAAGTAG+TGG 0.532154 1_3:-35846798 None:intergenic
CTGCACGCTCTCTTATCAGC+TGG 0.532896 1_3:-35846402 None:intergenic
TAGATAACAACATTATCTCT+GGG 0.534042 1_3:-35846833 None:intergenic
CCAAAGGGAACAACGCTAGC+AGG 0.534756 1_3:-35855363 None:intergenic
AGTGACAGGCGACTGGGCCA+TGG 0.535099 1_3:+35851438 Msa0116720:CDS
CACTTGCTTGCTTACAGGCA+GGG 0.535547 1_3:+35847113 Msa0116720:CDS
AAAGTGTAACACAGGCACTT+GGG 0.538825 1_3:-35849415 None:intergenic
ATCTGGATGATTAGCTAGGA+AGG 0.539146 1_3:-35848828 None:intergenic
TCATAAAGTGGTTCTTGAAG+TGG 0.540987 1_3:+35851542 Msa0116720:CDS
ATCTTCTTCTATATGAGGAT+CGG 0.543387 1_3:+35847420 Msa0116720:CDS
GTATCAAGACGTAGCCGACC+AGG 0.543633 1_3:+35846959 Msa0116720:CDS
TTCTCATTCCTCAGAAATGT+CGG 0.543799 1_3:+35847594 Msa0116720:CDS
ACTACATGCCAGTCATAAAG+TGG 0.544099 1_3:+35851530 Msa0116720:CDS
GCTTTGTTGCTACAAGATGC+AGG 0.544451 1_3:-35850751 None:intergenic
ACAAAACGTACTTTCAGGCA+AGG 0.545702 1_3:-35850033 None:intergenic
TGTTGGTGGACACTGTAATC+GGG 0.545964 1_3:+35847977 Msa0116720:CDS
AAAGACAAACTTGCAGGCTG+AGG 0.546000 1_3:+35851686 Msa0116720:CDS
GATTATCTCAGCTATCTGTA+AGG 0.546532 1_3:-35849230 None:intergenic
TCTTCTATATGAGGATCGGC+AGG 0.547401 1_3:+35847424 Msa0116720:CDS
CGTACTTTCAGGCAAGGGTA+AGG 0.547506 1_3:-35850027 None:intergenic
TTGTCAACACAAGATACATC+TGG 0.550545 1_3:+35851753 Msa0116720:CDS
TAACAAGTCTGAAGTCATGC+TGG 0.550885 1_3:-35846772 None:intergenic
GAAGCTGGAGCAACAGATGA+GGG 0.553462 1_3:+35851257 Msa0116720:CDS
CACAGCCTCCATGAAAGGTG+TGG 0.554075 1_3:-35847384 None:intergenic
TTATTGTGAGGTGGCATTCG+TGG 0.554265 1_3:-35851402 None:intergenic
GGAGATCTGGATGATTAGCT+AGG 0.556095 1_3:-35848832 None:intergenic
GCATTCCTCCAGTTCGTGAC+CGG 0.556754 1_3:+35854613 Msa0116720:CDS
CTAAAGCACTTCAAGACGGA+AGG 0.557300 1_3:+35851832 Msa0116720:CDS
GAATAGACATCCATGGCAAA+CGG 0.558982 1_3:-35848999 None:intergenic
TATGGACAAGCTTATTGGCA+AGG 0.559664 1_3:+35849684 Msa0116720:CDS
GAAAGGTGTGGGGCTTTCTG+AGG 0.560626 1_3:-35847372 None:intergenic
GTGCAGCGGACTCCAAGATC+CGG 0.561984 1_3:-35851497 None:intergenic
ACTTGCTTGCTTACAGGCAG+GGG 0.563872 1_3:+35847114 Msa0116720:CDS
GCAGAATCAGACTCAAAACT+AGG 0.564474 1_3:+35850718 Msa0116720:CDS
CAAGTCTGGAATTTCAAGAC+AGG 0.565412 1_3:+35852388 Msa0116720:CDS
GCATGAAGAGAAGATCAATA+GGG 0.565762 1_3:+35849648 Msa0116720:CDS
TCAACGTCTCAGCTTGTTGG+TGG 0.566127 1_3:+35847963 Msa0116720:CDS
GTTTCAGAGTTATTGTGAGG+TGG 0.566228 1_3:-35851411 None:intergenic
ACTCTGAAACAGTAAGTGAC+AGG 0.566598 1_3:+35851424 Msa0116720:CDS
AACTCATTTAGTTGGACAGA+AGG 0.567918 1_3:-35851213 None:intergenic
AACGACAGTTGAACGCCACT+AGG 0.569474 1_3:-35849358 None:intergenic
AGGGGTGTGTCGCCAGAGAG+AGG 0.571420 1_3:-35849883 None:intergenic
AAGTTCAACACAATCGGCAA+TGG 0.572318 1_3:+35846476 Msa0116720:CDS
ATTGATGAAAACCAGAGAAG+AGG 0.572627 1_3:-35845270 None:intergenic
ATGTATCCTTACATTGACAA+TGG 0.572984 1_3:-35854464 None:intergenic
GTGAGAGACCTGGTTAAAGC+CGG 0.573287 1_3:-35852426 None:intergenic
GTCTGGAATTTCAAGACAGG+TGG 0.575671 1_3:+35852391 Msa0116720:CDS
TAAGTGAAACATAATCCTCC+AGG 0.575930 1_3:-35852349 None:intergenic
TGTTTGGAATCGGTCTGTGA+AGG 0.576631 1_3:+35852099 Msa0116720:CDS
ACTATTATATCAAGCTTGAG+TGG 0.577573 1_3:+35846669 Msa0116720:CDS
TAAAACAAAATACTTGGCAC+CGG 0.578309 1_3:+35849522 Msa0116720:CDS
ACTTGATCCTGAGCTTGGTA+GGG 0.579205 1_3:+35852038 Msa0116720:CDS
TTCAATTGCCATCAAATACA+AGG 0.580500 1_3:+35850232 Msa0116720:CDS
AAGTGTAACACAGGCACTTG+GGG 0.583851 1_3:-35849414 None:intergenic
TTTCGGACAATAGTCAACTT+CGG 0.583993 1_3:-35854676 None:intergenic
CGATTGTGTTGAACTTACAT+CGG 0.584306 1_3:-35846469 None:intergenic
AGTGTAAATAGTATTCAAGA+GGG 0.584620 1_3:-35845199 None:intergenic
GCAAGTTTATCCGTTTGCCA+TGG 0.584844 1_3:+35848989 Msa0116720:CDS
CCAGCAATCTCAGAACGTGC+AGG 0.586068 1_3:+35850273 Msa0116720:CDS
CACTGACTACAATTGTTGGG+GGG 0.587521 1_3:+35855200 Msa0116720:three_prime_UTR
ATGGGCACAGCCTCCATGAA+AGG 0.588680 1_3:-35847389 None:intergenic
AGACGGAAGAAAACTTGTAA+GGG 0.588717 1_3:-35845239 None:intergenic
GTTGGCCATGGTCAAACTCT+CGG 0.589724 1_3:-35854585 None:intergenic
CAGTCACTTGATCCTGAGCT+TGG 0.590188 1_3:+35852033 Msa0116720:CDS
CAAAACGTACTTTCAGGCAA+GGG 0.590578 1_3:-35850032 None:intergenic
TATGATGAAGAAGTGGGCAC+TGG 0.590871 1_3:+35851567 Msa0116720:CDS
AAGCAATTAATGGGAAGTAG+AGG 0.591066 1_3:+35846348 Msa0116720:exon
GTAACAGCAGATGTACCAAA+GGG 0.591833 1_3:-35855378 None:intergenic
TCTGCATTTGACCTCTCACA+TGG 0.593150 1_3:+35847936 Msa0116720:CDS
AAAGGTGTGGGGCTTTCTGA+GGG 0.593542 1_3:-35847371 None:intergenic
GAGAATGAAGTCATGATAGG+TGG 0.593766 1_3:-35855038 None:intergenic
AGTAACAGCAGATGTACCAA+AGG 0.593777 1_3:-35855379 None:intergenic
ACTGAGGCGGTAGAAGAACT+AGG 0.594306 1_3:-35846441 None:intergenic
ACTGGAGGAATGCTCGTCGT+TGG 0.594696 1_3:-35854603 None:intergenic
TGTCGTTAGACTCTGGTCAA+AGG 0.595438 1_3:+35849374 Msa0116720:CDS
GTTCAACTGTCGTTAGACTC+TGG 0.597960 1_3:+35849367 Msa0116720:CDS
GTCTGCTTCAAGCCATTCAG+AGG 0.598638 1_3:+35846527 Msa0116720:CDS
AGAAAACTTGTAAGGGAAGA+GGG 0.598768 1_3:-35845232 None:intergenic
TAACTCATACAAAGTCCTGA+AGG 0.598862 1_3:-35847883 None:intergenic
AATGCTAAAACTTTATCATG+AGG 0.600450 1_3:-35850982 None:intergenic
AATAACTGATTACACCAGAA+AGG 0.600465 1_3:-35851309 None:intergenic
TCTCCTGCAGAAGCTTGGGA+TGG 0.601685 1_3:+35848850 Msa0116720:CDS
TAGTGTAAATAGTATTCAAG+AGG 0.603649 1_3:-35845200 None:intergenic
TGTGTTGACAACCATGGACG+AGG 0.605284 1_3:-35851741 None:intergenic
CTCTTGTATGCCATAACAGA+GGG 0.605670 1_3:+35855003 Msa0116720:CDS
GACTGCTAGCTGTGTAACCA+TGG 0.608389 1_3:-35854438 None:intergenic
GCTTCAAAGCTGAATAGGAA+AGG 0.609600 1_3:-35851342 None:intergenic
TAGTTTCATCATTTGTGCAG+CGG 0.609816 1_3:-35851511 None:intergenic
TTCAGAGGAAGAGCCAGAGA+AGG 0.609977 1_3:+35846542 Msa0116720:CDS
TCAAAATTGGTGTACCCTAG+TGG 0.610121 1_3:+35849343 Msa0116720:CDS
AGAACAGTATCAGGATACCC+AGG 0.611242 1_3:-35852195 None:intergenic
TTAACTAACCTGGATCAACA+TGG 0.611270 1_3:-35848882 None:intergenic
TGGTTCGGGCATGTGGAGAG+AGG 0.612565 1_3:+35851644 Msa0116720:CDS
TGCTGGAACTTCATCTACAC+AGG 0.614672 1_3:-35850256 None:intergenic
GAAGTTGACTATTGTCCGAA+AGG 0.615155 1_3:+35854678 Msa0116720:CDS
AAGTTCATCCGACATTTCTG+AGG 0.615184 1_3:-35847602 None:intergenic
TAACTAACCTGGATCAACAT+GGG 0.616198 1_3:-35848881 None:intergenic
TGCCCTCCGTTTCTATACAG+AGG 0.616284 1_3:-35855265 None:intergenic
ACAGTAAGTGACAGGCGACT+GGG 0.618520 1_3:+35851432 Msa0116720:CDS
GTAGGTAAATATGAGAAACC+TGG 0.620092 1_3:+35852331 Msa0116720:intron
TCACTGACTACAATTGTTGG+GGG 0.620886 1_3:+35855199 Msa0116720:three_prime_UTR
TCAAAGGTCTGCTTCTAGAG+AGG 0.621716 1_3:+35849390 Msa0116720:CDS
AGTACGGCCAACTGACCAGA+AGG 0.621879 1_3:-35846702 None:intergenic
ATCCTTACATTGACAATGGG+AGG 0.622117 1_3:-35854460 None:intergenic
AATCCTCCTGGAGGAAGCCG+AGG 0.623954 1_3:-35854640 None:intergenic
GAGAAGAGGATGATTGAAGA+CGG 0.624715 1_3:-35845256 None:intergenic
AGAGTCAATTTAGGATCCAG+AGG 0.625003 1_3:-35850808 None:intergenic
TGAAAGATATCTATGGCCAA+AGG 0.627351 1_3:+35850137 Msa0116720:CDS
ACTGTTTCAGAGTTATTGTG+AGG 0.627647 1_3:-35851414 None:intergenic
TGAATGGCTTGAAGCAGACG+AGG 0.628567 1_3:-35846523 None:intergenic
ATCACTTGGCCAATATATGG+GGG 0.630224 1_3:+35849768 Msa0116720:CDS
GGAAATTCTGAGTTGGAACA+GGG 0.632000 1_3:+35852120 Msa0116720:CDS
ACGACAGTTGAACGCCACTA+GGG 0.633007 1_3:-35849357 None:intergenic
TTGCTTGAGTGACTGTGCTG+AGG 0.633950 1_3:+35850074 Msa0116720:CDS
TTTGATGGCAATTGAAGCGG+TGG 0.634055 1_3:-35850225 None:intergenic
ACTTACATCGGTTTGAACTG+AGG 0.634578 1_3:-35846457 None:intergenic
TTCCTGATTAATATAGAAAG+GGG 0.636899 1_3:-35849901 None:intergenic
CGGACTCCAAGATCCGGTCG+CGG 0.637555 1_3:-35851491 None:intergenic
GTTGCTAAAGCACTTCAAGA+CGG 0.639670 1_3:+35851828 Msa0116720:CDS
GTATTTGATGGCAATTGAAG+CGG 0.640188 1_3:-35850228 None:intergenic
GTGTGCCGGTCACGAACTGG+AGG 0.640971 1_3:-35854618 None:intergenic
GACAGATCTATGTGAAACAC+AGG 0.642506 1_3:+35850302 Msa0116720:CDS
AACGGCACATCCATTAGGAA+CGG 0.644121 1_3:-35850004 None:intergenic
AGTGGAATATGATGAAGAAG+TGG 0.644187 1_3:+35851560 Msa0116720:CDS
CAGCCTCCATGAAAGGTGTG+GGG 0.644954 1_3:-35847382 None:intergenic
TAAAGCACTTCAAGACGGAA+GGG 0.648126 1_3:+35851833 Msa0116720:CDS
TATGCCATAACAGAGGGTCA+AGG 0.648375 1_3:+35855009 Msa0116720:CDS
AACGATTAAGAACTATAACT+AGG 0.649164 1_3:+35845478 Msa0116720:five_prime_UTR
ACATGACGAATAGACATCCA+TGG 0.650937 1_3:-35849006 None:intergenic
TTTGCACAAGTCATCACACT+AGG 0.653690 1_3:-35854830 None:intergenic
TTGAGCATGTCGACTGACGC+AGG 0.655636 1_3:+35849613 Msa0116720:CDS
TTAATTGGGATAGAGTCGCT+CGG 0.655783 1_3:-35847675 None:intergenic
TGTCCTCTGTATAGAAACGG+AGG 0.656728 1_3:+35855262 Msa0116720:three_prime_UTR
ACACCTCGGCTTCCTCCAGG+AGG 0.656878 1_3:+35854637 Msa0116720:CDS
ATTATCCGAGAGTTTGACCA+TGG 0.657833 1_3:+35854580 Msa0116720:CDS
GGAAGTACCAATTACCTGGT+CGG 0.658490 1_3:-35846973 None:intergenic
GATCACATTAAGTTCGACCA+TGG 0.659611 1_3:+35854421 Msa0116720:CDS
CTGTAACTCCTGACACACCA+AGG 0.659651 1_3:-35851616 None:intergenic
TACATCGGTTTGAACTGAGG+CGG 0.660125 1_3:-35846454 None:intergenic
GATGAAGAATGACAATCCGA+AGG 0.664348 1_3:-35850949 None:intergenic
CGGAGAGAACGATTCTTGGG+CGG 0.665814 1_3:+35854275 Msa0116720:CDS
CCTGCCTGTAAGCAAGCAAG+TGG 0.667610 1_3:-35847112 None:intergenic
AATGGAGCCCCATGATGACA+TGG 0.667701 1_3:+35846494 Msa0116720:CDS
GCGAGTGGCTCTTTCTACTG+TGG 0.668144 1_3:+35847328 Msa0116720:intron
ACGTTGATACACCATGTGAG+AGG 0.674768 1_3:-35847947 None:intergenic
ACAAGAAAACCAGCTGATCG+AGG 0.674778 1_3:-35846888 None:intergenic
GTGGTGTTAGTGCAAAATTG+TGG 0.675315 1_3:+35850872 Msa0116720:CDS
CACAAGTCATCACACTAGGT+AGG 0.681659 1_3:-35854826 None:intergenic
GAAGTATCCATGTCATCATG+GGG 0.681660 1_3:-35846501 None:intergenic
GCTCTTGTATGCCATAACAG+AGG 0.682277 1_3:+35855002 Msa0116720:CDS
AGCAGTCAATGTGAATGCTG+GGG 0.683168 1_3:+35850522 Msa0116720:CDS
TCTTTCGAGGCAATGCACCA+TGG 0.683196 1_3:-35851455 None:intergenic
AAACTTGTAAGGGAAGAGGG+TGG 0.684353 1_3:-35845229 None:intergenic
GTCCTCTGTATAGAAACGGA+GGG 0.684945 1_3:+35855263 Msa0116720:three_prime_UTR
GTGGAATATGATGAAGAAGT+GGG 0.686774 1_3:+35851561 Msa0116720:CDS
TTTCAGGCAAGGGTAAGGAA+CGG 0.690592 1_3:-35850022 None:intergenic
ATAGTAAAACAAAATGACAG+TGG 0.691364 1_3:+35850853 Msa0116720:CDS
GGTAAATATGAGAAACCTGG+AGG 0.695517 1_3:+35852334 Msa0116720:intron
AGTTCGTGACCGGCACACCT+CGG 0.697122 1_3:+35854623 Msa0116720:CDS
TAGAGCAGCTGTGAAACCTG+AGG 0.698518 1_3:+35850918 Msa0116720:CDS
AGAGATGCCAATCCTCCTGG+AGG 0.712039 1_3:-35854649 None:intergenic
GTATCTTGTGTTGACAACCA+TGG 0.715781 1_3:-35851747 None:intergenic
TTCAGGGTCTGATCACACCA+TGG 0.719758 1_3:+35852221 Msa0116720:CDS
TCAACACAAGATACATCTGG+TGG 0.725886 1_3:+35851756 Msa0116720:CDS
AAGCCCCACACCTTTCATGG+AGG 0.732117 1_3:+35847379 Msa0116720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGAAGGTGTAATTATT+AGG + chr1_3:35855083-35855102 Msa0116720:three_prime_UTR 20.0%
!!! TTTTGAAGGTGTAATTATTA+GGG + chr1_3:35855084-35855103 Msa0116720:three_prime_UTR 20.0%
!!! TTTTGTACAGTATTTAGTAT+TGG + chr1_3:35855315-35855334 Msa0116720:three_prime_UTR 20.0%
!! TTTGTACAGTATTTAGTATT+GGG + chr1_3:35855316-35855335 Msa0116720:three_prime_UTR 20.0%
!! TAAATGGCTATTAATCATTA+AGG - chr1_3:35855343-35855362 None:intergenic 20.0%
! AGTGTAAATAGTATTCAAGA+GGG - chr1_3:35845202-35845221 None:intergenic 25.0%
! TAGTGTAAATAGTATTCAAG+AGG - chr1_3:35845203-35845222 None:intergenic 25.0%
! TCAGCTTATTTGGATTTTGA+AGG + chr1_3:35855070-35855089 Msa0116720:three_prime_UTR 30.0%
! ATTGGTAGCAATGTAGATAA+AGG + chr1_3:35855109-35855128 Msa0116720:three_prime_UTR 30.0%
GGTGTAATTATTAGGGTGAT+TGG + chr1_3:35855091-35855110 Msa0116720:three_prime_UTR 35.0%
! TCTTCACTGACTACAATTGT+TGG + chr1_3:35855196-35855215 Msa0116720:three_prime_UTR 35.0%
! CTTCACTGACTACAATTGTT+GGG + chr1_3:35855197-35855216 Msa0116720:three_prime_UTR 35.0%
! TTCACTGACTACAATTGTTG+GGG + chr1_3:35855198-35855217 Msa0116720:three_prime_UTR 35.0%
AAAAACAGCTAACTATCAGC+AGG - chr1_3:35855235-35855254 None:intergenic 35.0%
!!! GCTGATAGTTAGCTGTTTTT+TGG + chr1_3:35855235-35855254 Msa0116720:three_prime_UTR 35.0%
TTCTGTCCTCTGTATAGAAA+CGG + chr1_3:35855259-35855278 Msa0116720:three_prime_UTR 35.0%
CATGACTTCATTCTCTTGAC+TGG + chr1_3:35855046-35855065 Msa0116720:exon 40.0%
CTTGACTGGATCAGCTTATT+TGG + chr1_3:35855060-35855079 Msa0116720:three_prime_UTR 40.0%
! TCACAGCAAGTTGCTTTCTT+GGG + chr1_3:35855159-35855178 Msa0116720:three_prime_UTR 40.0%
! TCACTGACTACAATTGTTGG+GGG + chr1_3:35855199-35855218 Msa0116720:three_prime_UTR 40.0%
GTAACAGCAGATGTACCAAA+GGG - chr1_3:35855381-35855400 None:intergenic 40.0%
AGTAACAGCAGATGTACCAA+AGG - chr1_3:35855382-35855401 None:intergenic 40.0%
TAACTAGTTGCTAGCAGTGC+TGG + chr1_3:35855136-35855155 Msa0116720:three_prime_UTR 45.0%
! GTCACAGCAAGTTGCTTTCT+TGG + chr1_3:35855158-35855177 Msa0116720:three_prime_UTR 45.0%
! CACAGCAAGTTGCTTTCTTG+GGG + chr1_3:35855160-35855179 Msa0116720:three_prime_UTR 45.0%
! CACTGACTACAATTGTTGGG+GGG + chr1_3:35855200-35855219 Msa0116720:three_prime_UTR 45.0%
TGTCCTCTGTATAGAAACGG+AGG + chr1_3:35855262-35855281 Msa0116720:three_prime_UTR 45.0%
GTCCTCTGTATAGAAACGGA+GGG + chr1_3:35855263-35855282 Msa0116720:three_prime_UTR 45.0%
GAACAACGCTAGCAGGTAAA+TGG - chr1_3:35855359-35855378 None:intergenic 45.0%
TGCCCTCCGTTTCTATACAG+AGG - chr1_3:35855268-35855287 None:intergenic 50.0%
CCAAAGGGAACAACGCTAGC+AGG - chr1_3:35855366-35855385 None:intergenic 55.0%
CCTGCTAGCGTTGTTCCCTT+TGG + chr1_3:35855363-35855382 Msa0116720:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 35845193 35855436 35845193 ID=Msa0116720;Name=Msa0116720
chr1_3 mRNA 35845193 35855436 35845193 ID=Msa0116720-mRNA-1;Parent=Msa0116720;Name=Msa0116720-mRNA-1;_AED=0.18;_eAED=0.18;_QI=228|1|1|1|0.83|0.78|19|386|1551
chr1_3 exon 35845193 35845280 35845193 ID=Msa0116720-mRNA-1:exon:11590;Parent=Msa0116720-mRNA-1
chr1_3 exon 35845394 35845499 35845394 ID=Msa0116720-mRNA-1:exon:11591;Parent=Msa0116720-mRNA-1
chr1_3 exon 35846323 35846980 35846323 ID=Msa0116720-mRNA-1:exon:11592;Parent=Msa0116720-mRNA-1
chr1_3 exon 35847076 35847186 35847076 ID=Msa0116720-mRNA-1:exon:11593;Parent=Msa0116720-mRNA-1
chr1_3 exon 35847329 35847445 35847329 ID=Msa0116720-mRNA-1:exon:11594;Parent=Msa0116720-mRNA-1
chr1_3 exon 35847547 35847705 35847547 ID=Msa0116720-mRNA-1:exon:11595;Parent=Msa0116720-mRNA-1
chr1_3 exon 35847837 35847998 35847837 ID=Msa0116720-mRNA-1:exon:11596;Parent=Msa0116720-mRNA-1
chr1_3 exon 35848743 35848895 35848743 ID=Msa0116720-mRNA-1:exon:11597;Parent=Msa0116720-mRNA-1
chr1_3 exon 35848974 35849095 35848974 ID=Msa0116720-mRNA-1:exon:11598;Parent=Msa0116720-mRNA-1
chr1_3 exon 35849180 35850323 35849180 ID=Msa0116720-mRNA-1:exon:11599;Parent=Msa0116720-mRNA-1
chr1_3 exon 35850484 35850567 35850484 ID=Msa0116720-mRNA-1:exon:11600;Parent=Msa0116720-mRNA-1
chr1_3 exon 35850691 35851905 35850691 ID=Msa0116720-mRNA-1:exon:11601;Parent=Msa0116720-mRNA-1
chr1_3 exon 35852012 35852242 35852012 ID=Msa0116720-mRNA-1:exon:11602;Parent=Msa0116720-mRNA-1
chr1_3 exon 35852335 35852439 35852335 ID=Msa0116720-mRNA-1:exon:11603;Parent=Msa0116720-mRNA-1
chr1_3 exon 35854216 35854296 35854216 ID=Msa0116720-mRNA-1:exon:11604;Parent=Msa0116720-mRNA-1
chr1_3 exon 35854406 35854474 35854406 ID=Msa0116720-mRNA-1:exon:11605;Parent=Msa0116720-mRNA-1
chr1_3 exon 35854571 35854699 35854571 ID=Msa0116720-mRNA-1:exon:11606;Parent=Msa0116720-mRNA-1
chr1_3 exon 35854800 35854883 35854800 ID=Msa0116720-mRNA-1:exon:11607;Parent=Msa0116720-mRNA-1
chr1_3 exon 35854985 35855436 35854985 ID=Msa0116720-mRNA-1:exon:11608;Parent=Msa0116720-mRNA-1
chr1_3 five_prime_UTR 35845193 35845280 35845193 ID=Msa0116720-mRNA-1:five_prime_utr;Parent=Msa0116720-mRNA-1
chr1_3 five_prime_UTR 35845394 35845499 35845394 ID=Msa0116720-mRNA-1:five_prime_utr;Parent=Msa0116720-mRNA-1
chr1_3 five_prime_UTR 35846323 35846356 35846323 ID=Msa0116720-mRNA-1:five_prime_utr;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35846357 35846980 35846357 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35847076 35847186 35847076 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35847329 35847445 35847329 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35847547 35847705 35847547 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35847837 35847998 35847837 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35848743 35848895 35848743 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35848974 35849095 35848974 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35849180 35850323 35849180 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35850484 35850567 35850484 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35850691 35851905 35850691 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35852012 35852242 35852012 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35852335 35852439 35852335 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35854216 35854296 35854216 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35854406 35854474 35854406 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35854571 35854699 35854571 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35854800 35854883 35854800 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 CDS 35854985 35855050 35854985 ID=Msa0116720-mRNA-1:cds;Parent=Msa0116720-mRNA-1
chr1_3 three_prime_UTR 35855051 35855436 35855051 ID=Msa0116720-mRNA-1:three_prime_utr;Parent=Msa0116720-mRNA-1
Gene Sequence

>Msa0116720

ATGGGAAGTAGAGGTCAAAAGCGTCCAGAAATGGTAGATGAACTGCCAGCTGATAAGAGAGCGTGCAGTTCGTTAGATTTTAGACCTAGTTCTTCTACCGCCTCAGTTCAAACCGATGTAAGTTCAACACAATCGGCAATGGAGCCCCATGATGACATGGATACTTCCTCGTCTGCTTCAAGCCATTCAGAGGAAGAGCCAGAGAAGGATTCAGCTGATGGATCATGTGATTCAGATGAAATGGAGCACTATCATAGCACTCTCCACGAATATCATAGACAGAGACTATCGAGTGATCATGGAAAATTTAAAACTATTATATCAAGCTTGAGTGGACAAACTGAACCTTCTGGTCAGTTGGCCGTACTCACTGAACTCTGCGAAGTTCTGTCATTTTGTACAGAGGGTTCAATCTCCAGCATGACTTCAGACTTGTTATCACCACTACTTGTAAAGCTTGCAAAACATGAGAGTAACCCAGAGATAATGTTGTTATCTATAAGGGCTATCACTTATATATGTGATCTGTATCCTCGATCAGCTGGTTTTCTTGTTCGTCATGATGCTGTTTCTGCTTTATGTCAAAGGTTACTAACTATTGAGTATCAAGACGTAGCCGACCAGTGTCTTCAAGCATTGGAGAAAATATCGAGAGAACAACCACTTGCTTGCTTACAGGCAGGGGCAATTATGGCTGTTCTGAATTATATTGATTTCTTCTCAACAAGCATACAGCGAGTGGCTCTTTCTACTGTGGTCAACATATGCAAGAAGCTTCCCTCAGAAAGCCCCACACCTTTCATGGAGGCTGTGCCCATATTATGCAATCTTCTTCTATATGAGGATCGGCAGCTTGTCGAAAACGTTGCTACCTGCTTAATCAAAATTGTTGATCGAGTTTCTCATTCCTCAGAAATGTCGGATGAACTTTGTAAGCATGGATTGATTCAACAGGTCACACATCTCTTAAGTGTAAATGGCCGAGCGACTCTATCCCAATTAATTTATAATGGTTTGATAGGATTACTTGTCAAACTTTCATCGGGATCAGTCGTAGCCTTCAGGACTTTGTATGAGTTAAATATAAGCATCACATTGAGAGATATATTGTCTGCATTTGACCTCTCACATGGTGTATCAACGTCTCAGCTTGTTGGTGGACACTGTAATCGGGTATATGAAGTACTCAAATTGCTGAATGAACTTCTCCCTGGCCTGGAAAAAGATCCGAATAATCAACTAGCATTGGACAAAGAATCCTTCCTAGCTAATCATCCAGATCTCCTGCAGAAGCTTGGGATGGATGTGTTTCCCATGTTGATCCAGGTGTTTAATTCTGGTGCAAGTTTATCCGTTTGCCATGGATGTCTATTCGTCATGTACAAGTTTGTTTGTTTGACCAAATCTGGCATGCTTGTGGAGCTTCTTAAGAACGCCAATATTTCAAGTTTTTTGGCTGGAGTTTTCACTCGGAAGGATCATCATATGCTAATGTTAGCCTTACAGATAGCTGAGATAATCCTTCAAAATTTTTCTGATATTTTCTTGAAGTTATTTATAAAGGAGGGTGTCTTTTTTGCCATTGAGGCACTCTTAACACCAGAAAGATCATCAAAATTGGTGTACCCTAGTGGCGTTCAACTGTCGTTAGACTCTGGTCAAAGGTCTGCTTCTAGAGAGGTCCCCAAGTGCCTGTGTTACACTTTTTCAACTGCCCAATCTCCTACATCATCAGAAGCCAAAAAGTGCAAACTTGACAAAGACTCTGTTCATAACCTTGCAGAGCATATTAAAACAAAATACTTGGCACCGGAATTATATGATTCTGAGAAAGGATTGACTGATATTTTGAAGAATCTCAGAGCACTGTCTAATGATTTGTTGAGCATGTCGACTGACGCAGGTGCTCTTGCTGTGCATGAAGAGAAGATCAATAGGGTACTGGATCAAATTATGGACAAGCTTATTGGCAAGGAAGAAGTTTCTACTTTTGAATTTATTGAGAGTGGAGTTGCAAAAGCACTTCTTAATTATTTATCACTTGGCCAATATATGGGGGAAAACAAGGGGATGCATGGTGTTTTTGGTCATAATGCTGTGATAGAAAAACGATTTGAGGCTTTAGCTAGTATATGCTTACGTACTTTTCAGCCTCTCTCTGGCGACACACCCCTTTCTATATTAATCAGGAATCTGCTGAGCGCACTGACTTCATTGGAAGCTTTTCCTATTATTCTGAGCAACGTACAAAAAATGAGAAATTCGTTTGCTACCGTTCCTAATGGATGTGCCGTTCCTTACCCTTGCCTGAAAGTACGTTTTGTTAAGGAGGAGAAAGAAACTTGCTTGAGTGACTGTGCTGAGGATTTTTTTACTGTCGACCCTTTTTCTTCTTTGCACTCAATTGAAAGATATCTATGGCCAAAGGTCAGCGTAAAAAGTGCAGAGGATGAGAAATTATCATCTGGTCAAGTAGTGTTGCAACCTGAAAGTCCACCGCTTCAATTGCCATCAAATACAAGGTCCTGTGTAGATGAAGTTCCAGCAATCTCAGAACGTGCAGGCATGTCGACAGATCTATGTGAAACACAGGGGGAAGAGCCAAAGACATCACATCCTAGACCCGATCAAGCAGTCAATGTGAATGCTGGGGAATCATCTTCTTCAGGAATTCAGATTGCAGAACAAGAAATGCATTTTGTTGCAGAATCAGACTCAAAACTAGGAAAAGAGCATCCTGCATCTTGTAGCAACAAAGCTGCTGATAAACTTATTTTTTACCTTGAAGGACAACCTCTGGATCCTAAATTGACTCTATATCAGGCAATTCTTGGCCAAATAGTAAAACAAAATGACAGTGGTGTTAGTGCAAAATTGTGGAGTCATGTGCATACATTAACCTATAGAGCAGCTGTGAAACCTGAGGACATAATGCCTTCGGATTGTCATTCTTCATCTCAAGATTTTCCTCATGATAAAGTTTTAGCATTATATCAGCGGACACCTTTTTTATCAGACATGTTCTATAGTGAACTTGTTTCTGATTTGGAGAAGTCAAGTCCAACTTATGATATTCTGTTTCTTCTTAAAAGCTTGGAAGGCATGAACAGATTTATTTTTCATCTCATGTCACGCGAAAGAATGTGTGCTTTTGCTGAAGGTAAAGTTGATAATCTGGATAGCCTAAAAATAACAGTTCCTTCTGTCCAACTAAATGAGTTCGTGAGCAGTAAGTTGACAGAGAAGCTGGAGCAACAGATGAGGGACTCTATGGCAGTCTGCGTTGGCAGTATGCCTTTCTGGTGTAATCAGTTATTGGCTTCTTGTCCTTTCCTATTCAGCTTTGAAGCAAGATGCAAGTACTTCAAACTGGCAGCATTTGGTCAGCCACGAATGCCACCTCACAATAACTCTGAAACAGTAAGTGACAGGCGACTGGGCCATGGTGCATTGCCTCGAAAGAAGTTTTTAGTTTACCGCGACCGGATCTTGGAGTCCGCTGCACAAATGATGAAACTACATGCCAGTCATAAAGTGGTTCTTGAAGTGGAATATGATGAAGAAGTGGGCACTGGTCTTGGACCAACTTTGGAATTTTATACCTTGGTGTGTCAGGAGTTACAGAAGTCTGGTTCGGGCATGTGGAGAGAGGATGCTTCTTCATATACCATAAAGACAAACTTGCAGGCTGAGGAAACAGGAATCCATTCTCTTTATGGACTCTTTCCTCGTCCATGGTTGTCAACACAAGATACATCTGGTGGCATACAGTTCTCTGAAGTAACAAATAAATTTTTCCTTTTAGGTCAAGTTGTTGCTAAAGCACTTCAAGACGGAAGGGTCTTAGATCTCCACTTTTCTAAAGCCTTCTATAAACTTATTCTTGGAAAGGAACTTTATCTTTACGACATACAGTCACTTGATCCTGAGCTTGGTAGGGTACTGCATGAGTTTCAAGCACTAGTTAACAGGAAATTTTGTTTGGAATCGGTCTGTGAAGGAAATTCTGAGTTGGAACAGGGACTAAGCTTTAGAGATTCCAGAATTGAGGATCTTTGTCTTGATTTTACTCTTCCTGGGTATCCTGATACTGTTCTTGCTTCAGGGTCTGATCACACCATGGTAAATATGAGAAACCTGGAGGATTATGTTTCACTTATTGTTGATGCAACTGTCAAGTCTGGAATTTCAAGACAGGTGGAAGCCTTCAAATCCGGCTTTAACCAGGTTTTTCCCATTGAACATCTTCAGATTTTCTACGAAGAAGAACTTGAGCGTATACTTTGCGGAGAGAACGATTCTTGGGCGATCAATGAGCTCGCAGATCACATTAAGTTCGACCATGGTTACACAGCTAGCAGTCCTCCCATTGTCAATTTGTTGGAAATTATCCGAGAGTTTGACCATGGCCAACGACGAGCATTCCTCCAGTTCGTGACCGGCACACCTCGGCTTCCTCCAGGAGGATTGGCATCTCTCAATCCGAAGTTGACTATTGTCCGAAAGCATTGTAGCAACCAAGCAGACACAGACCTACCTAGTGTGATGACTTGTGCAAATTACCTTAAGCTACCTCCGTATTCGTCAAAAGAGAAGATGAAAGAGAAGCTCTTGTATGCCATAACAGAGGGTCAAGGATCTTTCCACCTATCATGA
Protein sequence

>Msa0116720

MGSRGQKRPEMVDELPADKRACSSLDFRPSSSTASVQTDVSSTQSAMEPHDDMDTSSSASSHSEEEPEKDSADGSCDSDEMEHYHSTLHEYHRQRLSSDHGKFKTIISSLSGQTEPSGQLAVLTELCEVLSFCTEGSISSMTSDLLSPLLVKLAKHESNPEIMLLSIRAITYICDLYPRSAGFLVRHDAVSALCQRLLTIEYQDVADQCLQALEKISREQPLACLQAGAIMAVLNYIDFFSTSIQRVALSTVVNICKKLPSESPTPFMEAVPILCNLLLYEDRQLVENVATCLIKIVDRVSHSSEMSDELCKHGLIQQVTHLLSVNGRATLSQLIYNGLIGLLVKLSSGSVVAFRTLYELNISITLRDILSAFDLSHGVSTSQLVGGHCNRVYEVLKLLNELLPGLEKDPNNQLALDKESFLANHPDLLQKLGMDVFPMLIQVFNSGASLSVCHGCLFVMYKFVCLTKSGMLVELLKNANISSFLAGVFTRKDHHMLMLALQIAEIILQNFSDIFLKLFIKEGVFFAIEALLTPERSSKLVYPSGVQLSLDSGQRSASREVPKCLCYTFSTAQSPTSSEAKKCKLDKDSVHNLAEHIKTKYLAPELYDSEKGLTDILKNLRALSNDLLSMSTDAGALAVHEEKINRVLDQIMDKLIGKEEVSTFEFIESGVAKALLNYLSLGQYMGENKGMHGVFGHNAVIEKRFEALASICLRTFQPLSGDTPLSILIRNLLSALTSLEAFPIILSNVQKMRNSFATVPNGCAVPYPCLKVRFVKEEKETCLSDCAEDFFTVDPFSSLHSIERYLWPKVSVKSAEDEKLSSGQVVLQPESPPLQLPSNTRSCVDEVPAISERAGMSTDLCETQGEEPKTSHPRPDQAVNVNAGESSSSGIQIAEQEMHFVAESDSKLGKEHPASCSNKAADKLIFYLEGQPLDPKLTLYQAILGQIVKQNDSGVSAKLWSHVHTLTYRAAVKPEDIMPSDCHSSSQDFPHDKVLALYQRTPFLSDMFYSELVSDLEKSSPTYDILFLLKSLEGMNRFIFHLMSRERMCAFAEGKVDNLDSLKITVPSVQLNEFVSSKLTEKLEQQMRDSMAVCVGSMPFWCNQLLASCPFLFSFEARCKYFKLAAFGQPRMPPHNNSETVSDRRLGHGALPRKKFLVYRDRILESAAQMMKLHASHKVVLEVEYDEEVGTGLGPTLEFYTLVCQELQKSGSGMWREDASSYTIKTNLQAEETGIHSLYGLFPRPWLSTQDTSGGIQFSEVTNKFFLLGQVVAKALQDGRVLDLHFSKAFYKLILGKELYLYDIQSLDPELGRVLHEFQALVNRKFCLESVCEGNSELEQGLSFRDSRIEDLCLDFTLPGYPDTVLASGSDHTMVNMRNLEDYVSLIVDATVKSGISRQVEAFKSGFNQVFPIEHLQIFYEEELERILCGENDSWAINELADHIKFDHGYTASSPPIVNLLEIIREFDHGQRRAFLQFVTGTPRLPPGGLASLNPKLTIVRKHCSNQADTDLPSVMTCANYLKLPPYSSKEKMKEKLLYAITEGQGSFHLS*