AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116920 MtrunA17_Chr7g0257751 90.816 98 9 0 9 106 214 311 7.00e-62 196
Msa0116920 MtrunA17_Chr1g0173541 81.132 106 20 0 1 106 200 305 7.08e-61 194
Msa0116920 MtrunA17_Chr4g0059951 80.612 98 19 0 9 106 229 326 2.26e-53 175
Msa0116920 MtrunA17_Chr7g0242561 80.612 98 19 0 9 106 212 309 1.06e-52 172
Msa0116920 MtrunA17_Chr4g0033371 75.248 101 25 0 6 106 225 325 1.25e-52 172
Msa0116920 MtrunA17_Chr0c02g0489761 68.627 102 32 0 7 108 232 333 1.62e-45 154
Msa0116920 MtrunA17_Chr4g0074811 68.750 96 30 0 11 106 249 344 1.41e-44 151
Msa0116920 MtrunA17_Chr5g0441691 62.745 102 38 0 7 108 222 323 1.15e-43 148
Msa0116920 MtrunA17_Chr3g0131181 64.286 98 35 0 9 106 185 282 1.22e-43 148
Msa0116920 MtrunA17_Chr5g0397101 65.686 102 35 0 11 112 225 326 2.65e-43 147
Msa0116920 MtrunA17_Chr1g0200601 63.265 98 36 0 9 106 186 283 7.35e-43 146
Msa0116920 MtrunA17_Chr1g0170281 60.185 108 43 0 1 108 266 373 7.95e-43 147
Msa0116920 MtrunA17_Chr5g0444191 64.000 100 36 0 5 104 60 159 1.19e-42 139
Msa0116920 MtrunA17_Chr3g0098951 68.750 96 30 0 11 106 242 337 1.82e-42 145
Msa0116920 MtrunA17_Chr8g0385341 65.657 99 34 0 8 106 185 283 4.05e-42 144
Msa0116920 MtrunA17_Chr5g0448721 64.583 96 34 0 11 106 254 349 5.06e-42 144
Msa0116920 MtrunA17_Chr1g0176421 62.000 100 38 0 9 108 317 416 1.72e-41 144
Msa0116920 MtrunA17_Chr1g0176751 66.667 96 32 0 11 106 282 377 4.10e-41 142
Msa0116920 MtrunA17_Chr8g0387671 66.327 98 33 0 11 108 224 321 6.43e-41 141
Msa0116920 MtrunA17_Chr5g0444171 65.625 96 33 0 11 106 250 345 7.07e-41 141
Msa0116920 MtrunA17_Chr1g0157131 60.377 106 42 0 1 106 222 327 1.94e-40 140
Msa0116920 MtrunA17_Chr7g0267771 58.000 100 42 0 9 108 244 343 3.83e-38 133
Msa0116920 MtrunA17_Chr4g0074791 60.417 96 38 0 11 106 254 349 2.05e-36 129
Msa0116920 MtrunA17_Chr5g0405421 58.000 100 42 0 9 108 257 356 5.09e-36 128
Msa0116920 MtrunA17_Chr7g0267751 55.000 100 45 0 9 108 291 390 1.84e-35 127
Msa0116920 MtrunA17_Chr8g0374701 54.000 100 46 0 9 108 288 387 7.06e-35 125
Msa0116920 MtrunA17_Chr7g0256001 55.000 100 45 0 9 108 301 400 2.13e-34 124
Msa0116920 MtrunA17_Chr4g0045261 53.000 100 47 0 9 108 297 396 1.03e-33 122
Msa0116920 MtrunA17_Chr7g0276111 55.102 98 44 0 9 106 304 401 3.66e-33 120
Msa0116920 MtrunA17_Chr5g0402551 53.000 100 47 0 9 108 294 393 5.74e-33 120
Msa0116920 MtrunA17_Chr3g0127571 52.000 100 48 0 9 108 298 397 1.79e-32 119
Msa0116920 MtrunA17_Chr1g0203881 47.170 106 56 0 1 106 189 294 6.45e-29 108
Msa0116920 MtrunA17_Chr1g0190131 40.594 101 59 1 9 108 161 261 9.91e-25 94.4
Msa0116920 MtrunA17_Chr7g0274941 41.237 97 55 1 12 106 173 269 2.92e-21 85.5
Msa0116920 MtrunA17_Chr3g0132591 38.679 106 65 0 1 106 250 355 5.63e-21 86.3
Msa0116920 MtrunA17_Chr2g0304111 41.414 99 52 4 16 112 185 279 6.36e-17 74.7
Msa0116920 MtrunA17_Chr4g0069301 40.404 99 53 4 16 112 188 282 7.11e-17 74.7
Msa0116920 MtrunA17_Chr2g0302431 41.414 99 52 4 16 112 182 276 5.31e-16 72.4
Msa0116920 MtrunA17_Chr1g0166101 39.450 109 60 4 6 112 176 280 4.85e-15 69.3
Msa0116920 MtrunA17_Chr5g0441011 40.385 104 56 4 11 112 170 269 6.02e-15 69.3
Msa0116920 MtrunA17_Chr6g0478601 41.489 94 45 3 15 103 301 389 6.38e-15 69.3
Msa0116920 MtrunA17_Chr2g0284011 36.607 112 57 5 7 112 164 267 2.32e-14 67.4
Msa0116920 MtrunA17_Chr8g0355131 36.283 113 67 2 1 108 191 303 2.85e-14 67.4
Msa0116920 MtrunA17_Chr1g0188031 35.455 110 64 3 6 112 173 278 4.78e-14 66.6
Msa0116920 MtrunA17_Chr4g0001331 37.000 100 57 3 15 112 180 275 1.08e-13 65.9
Msa0116920 MtrunA17_Chr4g0018201 42.045 88 49 2 14 100 947 1033 5.10e-13 63.9
Msa0116920 MtrunA17_Chr1g0150321 40.426 94 50 4 15 106 173 262 5.58e-13 63.5
Msa0116920 MtrunA17_Chr7g0266031 39.175 97 54 4 10 104 722 815 6.70e-13 63.5
Msa0116920 MtrunA17_Chr7g0244521 35.577 104 61 2 11 112 168 267 7.11e-13 63.2
Msa0116920 MtrunA17_Chr4g0008561 37.634 93 55 3 14 104 178 269 7.73e-13 63.2
Msa0116920 MtrunA17_Chr4g0013131 35.185 108 56 4 11 112 168 267 8.24e-13 63.2
Msa0116920 MtrunA17_Chr5g0428981 42.045 88 49 2 14 100 951 1037 9.58e-13 63.2
Msa0116920 MtrunA17_Chr4g0063881 37.963 108 57 5 2 105 157 258 1.16e-12 62.8
Msa0116920 MtrunA17_Chr3g0132671 35.577 104 61 3 11 112 203 302 1.63e-12 62.4
Msa0116920 MtrunA17_Chr6g0468751 39.785 93 50 2 15 105 177 265 1.63e-12 62.4
Msa0116920 MtrunA17_Chr6g0453681 39.785 93 50 2 15 105 177 265 1.66e-12 62.4
Msa0116920 MtrunA17_Chr1g0167311 40.659 91 51 3 14 103 315 403 2.54e-12 61.6
Msa0116920 MtrunA17_Chr7g0234641 37.383 107 57 3 9 112 236 335 2.92e-12 61.6
Msa0116920 MtrunA17_Chr3g0125381 31.683 101 66 2 7 106 103 201 4.29e-12 60.1
Msa0116920 MtrunA17_Chr3g0131061 35.849 106 63 5 4 105 150 254 4.98e-12 60.8
Msa0116920 MtrunA17_Chr2g0284031 31.731 104 65 3 11 112 187 286 9.05e-12 60.1
Msa0116920 MtrunA17_Chr8g0379091 34.286 105 62 4 11 112 182 282 1.14e-11 60.1
Msa0116920 MtrunA17_Chr8g0338741 32.381 105 65 2 9 112 245 344 1.15e-11 59.7
Msa0116920 MtrunA17_Chr3g0135951 39.806 103 55 5 15 112 302 402 2.38e-11 58.9
Msa0116920 MtrunA17_Chr8g0346081 39.000 100 55 4 15 112 176 271 2.52e-11 58.9
Msa0116920 MtrunA17_Chr1g0167351 40.244 82 44 3 14 92 310 389 3.61e-11 58.5
Msa0116920 MtrunA17_Chr8g0345801 35.354 99 62 2 2 98 162 260 6.93e-11 57.4
Msa0116920 MtrunA17_Chr1g0187581 40.244 82 44 3 14 92 316 395 9.17e-11 57.4
Msa0116920 MtrunA17_Chr3g0140631 34.000 100 63 2 10 108 188 285 9.88e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116920 AT3G57530.1 86.735 98 13 0 9 106 219 316 9.80e-59 189
Msa0116920 AT3G57530.2 84.158 101 16 0 8 108 218 318 1.71e-58 186
Msa0116920 AT2G41860.1 84.694 98 15 0 9 106 210 307 5.54e-57 184
Msa0116920 AT5G12480.2 83.673 98 16 0 9 106 121 218 9.32e-57 181
Msa0116920 AT2G41860.2 83.673 98 16 0 9 106 210 307 1.79e-56 183
Msa0116920 AT5G12480.1 83.673 98 16 0 9 106 215 312 4.32e-56 182
Msa0116920 AT3G51850.2 80.612 98 19 0 9 106 210 307 4.41e-55 179
Msa0116920 AT5G19450.2 81.633 98 18 0 9 106 213 310 2.78e-54 177
Msa0116920 AT5G19450.1 81.633 98 18 0 9 106 213 310 2.78e-54 177
Msa0116920 AT3G51850.3 80.612 98 19 0 9 106 210 307 2.95e-54 174
Msa0116920 AT3G51850.1 80.612 98 19 0 9 106 210 307 2.10e-53 175
Msa0116920 AT1G74740.1 74.257 101 26 0 8 108 214 314 1.63e-49 164
Msa0116920 AT2G31500.1 76.768 99 23 0 8 106 221 319 1.82e-49 165
Msa0116920 AT1G18890.1 72.277 101 28 0 8 108 218 318 2.80e-49 164
Msa0116920 AT5G12180.1 67.000 100 33 0 9 108 229 328 2.21e-43 148
Msa0116920 AT2G17290.1 65.625 96 33 0 11 106 243 338 3.05e-43 148
Msa0116920 AT2G17290.2 65.625 96 33 0 11 106 243 338 3.05e-43 148
Msa0116920 AT4G04740.4 67.708 96 31 0 11 106 227 322 6.26e-43 147
Msa0116920 AT4G04740.6 67.708 96 31 0 11 106 227 322 6.26e-43 147
Msa0116920 AT4G04740.5 67.708 96 31 0 11 106 227 322 6.26e-43 147
Msa0116920 AT4G04740.3 67.708 96 31 0 11 106 227 322 6.26e-43 147
Msa0116920 AT4G04740.1 67.708 96 31 0 11 106 227 322 6.26e-43 147
Msa0116920 AT4G04740.7 67.708 96 31 0 11 106 227 322 6.26e-43 147
Msa0116920 AT3G10660.2 65.000 100 35 0 9 108 342 441 1.17e-42 147
Msa0116920 AT3G10660.1 65.000 100 35 0 9 108 342 441 1.17e-42 147
Msa0116920 AT4G23650.1 67.327 101 33 0 8 108 233 333 1.26e-42 146
Msa0116920 AT5G04870.1 65.625 96 33 0 11 106 308 403 1.37e-42 147
Msa0116920 AT4G04740.2 67.708 96 31 0 11 106 227 322 1.55e-42 146
Msa0116920 AT1G50700.3 68.750 96 30 0 11 106 231 326 2.52e-42 144
Msa0116920 AT1G50700.1 68.750 96 30 0 11 106 231 326 4.99e-42 144
Msa0116920 AT1G50700.2 68.750 96 30 0 11 106 231 326 5.84e-42 144
Msa0116920 AT4G35310.2 64.583 96 34 0 11 106 255 350 1.69e-41 143
Msa0116920 AT4G35310.1 64.583 96 34 0 11 106 255 350 1.69e-41 143
Msa0116920 AT4G04720.2 65.625 96 33 0 11 106 238 333 2.79e-41 142
Msa0116920 AT4G04720.1 65.625 96 33 0 11 106 238 333 2.79e-41 142
Msa0116920 AT3G20410.2 65.625 96 33 0 11 106 249 344 2.90e-41 142
Msa0116920 AT3G20410.1 65.625 96 33 0 11 106 249 344 2.90e-41 142
Msa0116920 AT4G09570.1 65.625 96 33 0 13 108 185 280 8.81e-41 140
Msa0116920 AT2G35890.2 56.604 106 46 0 1 106 280 385 1.38e-40 140
Msa0116920 AT2G35890.1 56.604 106 46 0 1 106 280 385 1.38e-40 140
Msa0116920 AT2G38910.1 61.224 98 38 0 9 106 290 387 2.43e-40 140
Msa0116920 AT4G38230.4 61.458 96 37 0 11 106 182 277 2.43e-40 139
Msa0116920 AT4G38230.3 61.458 96 37 0 11 106 182 277 2.43e-40 139
Msa0116920 AT4G38230.2 61.458 96 37 0 11 106 212 307 4.53e-40 139
Msa0116920 AT4G38230.1 61.458 96 37 0 11 106 38 133 6.57e-40 135
Msa0116920 AT5G19360.1 63.366 101 37 0 8 108 223 323 8.75e-40 138
Msa0116920 AT1G76040.1 62.500 96 36 0 11 106 32 127 1.03e-39 134
Msa0116920 AT1G76040.4 62.500 96 36 0 11 106 32 127 1.03e-39 134
Msa0116920 AT1G35670.1 63.542 96 35 0 13 108 186 281 1.87e-39 137
Msa0116920 AT5G23580.1 60.000 100 40 0 9 108 178 277 2.43e-39 137
Msa0116920 AT1G61950.1 65.625 96 33 0 11 106 257 352 3.12e-39 137
Msa0116920 AT1G76040.3 62.500 96 36 0 11 106 270 365 3.36e-39 137
Msa0116920 AT1G76040.2 62.500 96 36 0 11 106 270 365 4.98e-39 137
Msa0116920 AT4G21940.3 60.417 96 38 0 11 106 260 355 7.38e-39 135
Msa0116920 AT4G21940.1 60.417 96 38 0 11 106 260 355 1.41e-38 135
Msa0116920 AT4G21940.2 60.417 96 38 0 11 106 260 355 1.50e-38 135
Msa0116920 AT5G66210.6 58.000 100 42 0 9 108 220 319 1.52e-36 129
Msa0116920 AT5G66210.4 58.000 100 42 0 9 108 220 319 1.52e-36 129
Msa0116920 AT5G66210.5 58.000 100 42 0 9 108 220 319 2.58e-36 128
Msa0116920 AT5G66210.1 58.000 100 42 0 9 108 220 319 3.85e-36 129
Msa0116920 AT5G66210.2 58.000 100 42 0 9 108 220 319 3.85e-36 129
Msa0116920 AT5G66210.3 58.000 100 42 0 9 108 220 319 4.80e-36 128
Msa0116920 AT2G17890.1 56.000 100 44 0 9 108 266 365 1.38e-34 125
Msa0116920 AT3G50530.2 55.000 100 45 0 9 108 339 438 3.08e-34 124
Msa0116920 AT3G50530.1 55.000 100 45 0 9 108 308 407 3.79e-34 124
Msa0116920 AT4G36070.2 54.545 99 45 0 10 108 230 328 4.07e-33 120
Msa0116920 AT4G36070.1 54.545 99 45 0 10 108 230 328 4.31e-33 120
Msa0116920 AT2G41140.1 54.000 100 46 0 9 108 283 382 6.43e-33 120
Msa0116920 AT1G49580.1 55.102 98 44 0 9 106 310 407 6.93e-33 120
Msa0116920 AT2G46700.2 53.061 98 46 0 9 106 122 219 8.80e-33 118
Msa0116920 AT2G46700.3 53.061 98 46 0 9 106 122 219 8.80e-33 118
Msa0116920 AT3G56760.1 53.000 100 47 0 9 108 284 383 9.25e-33 120
Msa0116920 AT3G19100.1 55.102 98 44 0 9 106 304 401 1.09e-32 120
Msa0116920 AT2G46700.1 53.061 98 46 0 9 106 303 400 3.16e-32 118
Msa0116920 AT3G49370.1 49.000 100 51 0 9 108 302 401 3.18e-30 113
Msa0116920 AT5G24430.1 48.000 100 52 0 9 108 303 402 3.76e-30 112
Msa0116920 AT4G04700.1 50.980 102 50 0 11 112 190 291 2.53e-28 107
Msa0116920 AT1G12580.1 45.370 108 59 0 1 108 192 299 3.01e-28 107
Msa0116920 AT4G04710.2 53.000 100 41 1 7 106 194 287 3.56e-28 106
Msa0116920 AT4G04710.3 53.000 100 41 1 7 106 180 273 4.87e-28 106
Msa0116920 AT4G04710.1 49.533 107 47 1 7 106 194 300 4.28e-27 103
Msa0116920 AT4G04710.4 49.533 107 47 1 7 106 194 300 4.32e-27 103
Msa0116920 AT1G12680.1 43.396 106 60 0 1 106 245 350 8.53e-25 97.4
Msa0116920 AT4G04695.1 46.226 106 57 0 7 112 186 291 9.64e-24 94.4
Msa0116920 AT1G08650.2 41.748 103 59 1 5 106 166 268 2.80e-23 90.9
Msa0116920 AT1G08650.1 41.748 103 59 1 5 106 166 268 3.25e-23 90.9
Msa0116920 AT3G04530.1 41.228 114 58 2 6 110 163 276 1.32e-22 89.4
Msa0116920 AT4G30960.1 42.424 99 51 4 16 112 185 279 1.69e-16 73.9
Msa0116920 AT1G30270.3 39.423 104 57 4 11 112 91 190 1.80e-16 73.9
Msa0116920 AT1G30270.2 39.423 104 57 4 11 112 188 287 1.88e-16 73.9
Msa0116920 AT1G30270.1 39.423 104 57 4 11 112 188 287 2.19e-16 73.6
Msa0116920 AT5G10930.1 43.820 89 44 3 15 101 173 257 3.21e-15 70.5
Msa0116920 AT5G39440.1 42.857 91 47 2 16 105 178 264 5.58e-15 69.7
Msa0116920 AT5G21222.1 41.000 100 53 4 15 112 174 269 7.52e-15 69.3
Msa0116920 AT5G21222.2 41.000 100 53 4 15 112 174 269 7.52e-15 69.3
Msa0116920 AT5G21222.4 41.000 100 53 4 15 112 174 269 7.52e-15 69.3
Msa0116920 AT5G21222.3 41.000 100 53 4 15 112 174 269 7.52e-15 69.3
Msa0116920 AT5G21326.1 41.000 100 53 4 15 112 174 269 1.86e-14 68.2
Msa0116920 AT5G62310.1 41.000 100 49 3 8 102 937 1031 3.43e-14 67.8
Msa0116920 AT5G01810.1 35.354 99 58 3 16 112 173 267 3.85e-14 67.4
Msa0116920 AT5G01810.2 35.354 99 58 3 16 112 173 267 3.85e-14 67.4
Msa0116920 AT5G01810.3 35.354 99 58 3 16 112 173 267 4.38e-14 67.0
Msa0116920 AT1G45160.1 38.710 93 47 3 15 102 856 943 5.81e-14 67.0
Msa0116920 AT1G45160.2 38.710 93 47 3 15 102 856 943 5.93e-14 67.0
Msa0116920 AT3G17510.1 41.000 100 51 4 16 112 182 276 7.68e-14 66.6
Msa0116920 AT3G53930.1 37.500 96 51 3 14 104 179 270 7.87e-14 66.6
Msa0116920 AT3G53930.2 37.500 96 51 3 14 104 179 270 7.87e-14 66.6
Msa0116920 AT3G17850.1 36.522 115 60 4 6 112 1063 1172 1.08e-13 66.2
Msa0116920 AT3G17510.2 39.048 105 56 4 11 112 97 196 1.09e-13 65.9
Msa0116920 AT5G45810.1 37.500 104 59 3 11 112 184 283 1.20e-13 65.9
Msa0116920 AT3G29160.3 39.394 99 54 2 16 112 179 273 1.92e-13 65.1
Msa0116920 AT1G48260.2 40.000 100 52 4 16 112 88 182 1.99e-13 65.1
Msa0116920 AT1G48260.4 40.000 100 52 4 16 112 88 182 1.99e-13 65.1
Msa0116920 AT1G48260.3 40.000 100 52 4 16 112 88 182 1.99e-13 65.1
Msa0116920 AT1G48260.5 40.000 100 52 4 16 112 88 182 1.99e-13 65.1
Msa0116920 AT1G48490.4 41.111 90 51 2 15 103 1013 1101 2.14e-13 65.5
Msa0116920 AT1G48260.1 40.000 100 52 4 16 112 173 267 2.27e-13 65.1
Msa0116920 AT1G48490.3 41.111 90 51 2 15 103 1012 1100 2.29e-13 65.1
Msa0116920 AT1G48490.2 41.111 90 51 2 15 103 1012 1100 2.29e-13 65.1
Msa0116920 AT1G48490.1 41.111 90 51 2 15 103 1012 1100 2.29e-13 65.1
Msa0116920 AT5G25110.1 42.697 89 45 4 15 101 203 287 2.49e-13 65.1
Msa0116920 AT2G25090.1 38.710 93 51 4 15 105 184 272 3.16e-13 64.7
Msa0116920 AT4G18700.1 35.577 104 61 3 11 112 182 281 5.07e-13 64.3
Msa0116920 AT3G29160.1 39.000 100 55 2 15 112 178 273 5.96e-13 63.9
Msa0116920 AT3G29160.2 39.000 100 55 2 15 112 178 273 5.96e-13 63.9
Msa0116920 AT5G03640.2 37.755 98 54 4 10 104 774 867 8.43e-13 63.5
Msa0116920 AT5G03640.1 37.755 98 54 4 10 104 774 867 8.43e-13 63.5
Msa0116920 AT3G01090.2 40.860 93 49 2 15 105 200 288 1.04e-12 63.2
Msa0116920 AT3G01090.3 40.860 93 49 2 15 105 177 265 1.09e-12 63.2
Msa0116920 AT3G01090.1 40.860 93 49 2 15 105 177 265 1.09e-12 63.2
Msa0116920 AT1G01140.2 36.000 100 60 3 15 112 180 277 1.31e-12 63.2
Msa0116920 AT5G45820.1 35.644 101 55 5 16 112 173 267 1.54e-12 62.8
Msa0116920 AT4G40010.1 36.842 95 56 4 15 105 160 254 1.99e-12 62.4
Msa0116920 AT4G24400.2 40.860 93 47 3 16 105 169 256 2.37e-12 62.4
Msa0116920 AT2G20050.1 35.644 101 58 3 6 103 930 1026 2.65e-12 62.4
Msa0116920 AT2G20050.2 35.644 101 58 3 6 103 927 1023 2.73e-12 62.0
Msa0116920 AT2G37840.1 36.458 96 52 3 14 104 171 262 3.52e-12 62.0
Msa0116920 AT2G37840.2 36.458 96 52 3 14 104 34 125 4.80e-12 61.2
Msa0116920 AT4G24400.1 40.426 94 48 4 15 105 168 256 6.24e-12 60.8
Msa0116920 AT3G25250.1 30.973 113 72 2 1 112 223 330 7.57e-12 60.8
Msa0116920 AT2G30360.1 33.673 98 59 4 11 106 179 272 8.91e-12 60.5
Msa0116920 AT5G09890.1 41.772 79 45 1 15 92 305 383 1.09e-11 60.5
Msa0116920 AT5G09890.2 41.772 79 45 1 15 92 305 383 1.18e-11 60.5
Msa0116920 AT2G26980.2 41.667 84 43 4 15 96 175 254 9.26e-11 57.4

Find 22 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTTACATCTTACTTTC+TGG 0.208402 1_3:-36400457 Msa0116920:CDS
ACTTCAGGGGCCATGTAATA+TGG 0.287926 1_3:+36400529 None:intergenic
GCACTCCAGATATCAATTTC+AGG 0.289113 1_3:+36400487 None:intergenic
GTGCAGTAAGCCGGCGCTTT+GGG 0.289898 1_3:+36399717 None:intergenic
TGTGCAGTAAGCCGGCGCTT+TGG 0.327314 1_3:+36399716 None:intergenic
GAAAGATTTAACGAGATAGT+TGG 0.378078 1_3:-36400556 Msa0116920:CDS
GTAAGCCGGCGCTTTGGGTC+AGG 0.420975 1_3:+36399722 None:intergenic
ATGGCCCTGAAATTGATATC+TGG 0.424350 1_3:-36400492 Msa0116920:CDS
CTTACTGCACAGGAAGTGTT+AGG 0.448592 1_3:-36399704 Msa0116920:CDS
TTCGCATTATCAGAAACCTT+TGG 0.449362 1_3:+36399770 None:intergenic
TTAAAATGCAGAAACTGAGC+AGG 0.461264 1_3:-36399846 Msa0116920:intron
AAAGCGCCGGCTTACTGCAC+AGG 0.477508 1_3:-36399714 Msa0116920:CDS
CACTCCAGATATCAATTTCA+GGG 0.504258 1_3:+36400488 None:intergenic
GAAATTGATATCTGGAGTGC+TGG 0.520506 1_3:-36400484 Msa0116920:CDS
TTATCAGAAACCTTTGGCCA+TGG 0.532002 1_3:+36399776 None:intergenic
TTGACTTTACAAGGGTTCCA+TGG 0.534211 1_3:-36399793 Msa0116920:CDS
TACAAGGGTTCCATGGCCAA+AGG 0.558449 1_3:-36399786 Msa0116920:CDS
ACACTTCCTGTGCAGTAAGC+CGG 0.574215 1_3:+36399708 None:intergenic
AGTTGGAAGTCCATATTACA+TGG 0.582119 1_3:-36400539 Msa0116920:CDS
TTGATCCTGACCCAAAGCGC+CGG 0.592831 1_3:-36399727 Msa0116920:CDS
GATCAAGCATCTTCTTAACA+AGG 0.646363 1_3:+36399744 None:intergenic
TAAAATGCAGAAACTGAGCA+GGG 0.661481 1_3:-36399845 Msa0116920:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATACATAACATAAA+TGG - chr1_3:36399950-36399969 Msa0116920:intron 10.0%
!! ATATATATCATGTTAACATT+TGG - chr1_3:36401274-36401293 Msa0116920:intron 15.0%
!!! AATTTCTTTTTAATACTTCA+GGG + chr1_3:36401733-36401752 None:intergenic 15.0%
!!! TAATTTCTTTTTAATACTTC+AGG + chr1_3:36401734-36401753 None:intergenic 15.0%
!!! GAAGTATTAAAAAGAAATTA+TGG - chr1_3:36401734-36401753 Msa0116920:intron 15.0%
!! AATATACAAATGTAAATACA+AGG + chr1_3:36402257-36402276 None:intergenic 15.0%
!! TTTATTGTTGGATTAAAATG+TGG + chr1_3:36400315-36400334 None:intergenic 20.0%
!! CAAAATACTAGTGATATTAA+AGG - chr1_3:36400605-36400624 Msa0116920:intron 20.0%
!!! TGTTTTATAACTTAAAAGCT+TGG - chr1_3:36401103-36401122 Msa0116920:intron 20.0%
!!! ATATCACTTATCAAAGTTTT+TGG - chr1_3:36401202-36401221 Msa0116920:intron 20.0%
!!! TAAAGTTTACAATTTTGTGT+AGG - chr1_3:36401665-36401684 Msa0116920:intron 20.0%
!!! ATTTCTTTTTAATACTTCAG+GGG + chr1_3:36401732-36401751 None:intergenic 20.0%
!!! ATCTTTTATTGACTTTACAA+GGG - chr1_3:36402444-36402463 Msa0116920:intron 20.0%
! TGTACTTCATTAGTGAAATT+CGG - chr1_3:36399791-36399810 Msa0116920:CDS 25.0%
!!! GCTGATTTTCTAAATCAAAA+CGG - chr1_3:36399844-36399863 Msa0116920:intron 25.0%
!!! GTCTGTTTTTTTTTTCTTGA+AGG - chr1_3:36399895-36399914 Msa0116920:intron 25.0%
! AAAAATTTACGGAAGGAATT+AGG - chr1_3:36400696-36400715 Msa0116920:intron 25.0%
! AAAATTTACGGAAGGAATTA+GGG - chr1_3:36400697-36400716 Msa0116920:intron 25.0%
! GAAACAATATTTGCATGTTT+AGG + chr1_3:36400867-36400886 None:intergenic 25.0%
! TGCAAATATTGTTTCATTGA+AGG - chr1_3:36400872-36400891 Msa0116920:intron 25.0%
!! TGATGATGTTCATCTTATTA+TGG - chr1_3:36400911-36400930 Msa0116920:intron 25.0%
! AAAAAAGATGAGAAAAGAGA+GGG + chr1_3:36401045-36401064 None:intergenic 25.0%
! AAAAAAAGATGAGAAAAGAG+AGG + chr1_3:36401046-36401065 None:intergenic 25.0%
! TTATAACTTAAAAGCTTGGT+CGG - chr1_3:36401107-36401126 Msa0116920:intron 25.0%
!! ACATTTGGAGTTAAAATGTT+AGG - chr1_3:36401289-36401308 Msa0116920:intron 25.0%
! ATATATCATAACCAACAGAA+GGG + chr1_3:36401390-36401409 None:intergenic 25.0%
! AATATATCATAACCAACAGA+AGG + chr1_3:36401391-36401410 None:intergenic 25.0%
!! TTCTGTTGGTTATGATATAT+TGG - chr1_3:36401390-36401409 Msa0116920:intron 25.0%
!! TCTGTTGGTTATGATATATT+GGG - chr1_3:36401391-36401410 Msa0116920:intron 25.0%
! AAACTTTAGTTAACTGTGTA+TGG + chr1_3:36401653-36401672 None:intergenic 25.0%
! ATTCTTTACATCTTACTTTC+TGG - chr1_3:36401788-36401807 Msa0116920:intron 25.0%
! CACTTTAACCTAAATTCTTA+AGG + chr1_3:36401978-36401997 None:intergenic 25.0%
!! AACTACTCTAAAAAAAGAGT+AGG + chr1_3:36402104-36402123 None:intergenic 25.0%
! TTACTATAACCTACTTGAAA+GGG - chr1_3:36402122-36402141 Msa0116920:intron 25.0%
!!! GATCTTTTATTGACTTTACA+AGG - chr1_3:36402443-36402462 Msa0116920:intron 25.0%
AAACAGACGTGTAAAATTGT+AGG + chr1_3:36399883-36399902 None:intergenic 30.0%
!! AGCCAGGAATATTTTTATGA+GGG + chr1_3:36399978-36399997 None:intergenic 30.0%
TCCGGTTATAAAACTAGTTA+CGG - chr1_3:36400011-36400030 Msa0116920:intron 30.0%
!!! TCCGTAACTAGTTTTATAAC+CGG + chr1_3:36400015-36400034 None:intergenic 30.0%
ATAGAATTTGCCTATAATCG+TGG - chr1_3:36400108-36400127 Msa0116920:intron 30.0%
AATAACCAATCCACGATTAT+AGG + chr1_3:36400121-36400140 None:intergenic 30.0%
!!! ATTTATTTTGCGTTGGAATG+AGG + chr1_3:36400165-36400184 None:intergenic 30.0%
!!! CAAGACTATTTATTTTGCGT+TGG + chr1_3:36400172-36400191 None:intergenic 30.0%
CAACGCAAAATAAATAGTCT+TGG - chr1_3:36400170-36400189 Msa0116920:intron 30.0%
CAAGTTATGTAGGTTGTTTA+TGG - chr1_3:36400255-36400274 Msa0116920:intron 30.0%
!! AAGGTGGAGTATTTTATTGT+TGG + chr1_3:36400327-36400346 None:intergenic 30.0%
TTAACAGTCGCTTAAAACAA+AGG + chr1_3:36400346-36400365 None:intergenic 30.0%
ATTACTAGATCTCCAATTGA+TGG - chr1_3:36400494-36400513 Msa0116920:CDS 30.0%
TTACTAGATCTCCAATTGAT+GGG - chr1_3:36400495-36400514 Msa0116920:CDS 30.0%
!!! GTTTTGTTTATTGTTCCTAC+TGG + chr1_3:36400541-36400560 None:intergenic 30.0%
GAACAATAAACAAAACCGAA+AGG - chr1_3:36400545-36400564 Msa0116920:CDS 30.0%
GAGAATTCGGGAAAAATTTA+CGG - chr1_3:36400685-36400704 Msa0116920:intron 30.0%
CTATGCAAAGATAGAAATAC+TGG - chr1_3:36400744-36400763 Msa0116920:intron 30.0%
AGCGTGTAAATCAATTTCAA+AGG - chr1_3:36400776-36400795 Msa0116920:intron 30.0%
TATTGAAGATGTTAGAAGAG+AGG - chr1_3:36400821-36400840 Msa0116920:intron 30.0%
!!! ACAAGGTATACTTTGTTTTC+TGG - chr1_3:36401312-36401331 Msa0116920:intron 30.0%
! TCTTTGAAAGCAATTGACTT+TGG - chr1_3:36401521-36401540 Msa0116920:intron 30.0%
! CTGTCAATTTTCTTTAAACC+AGG - chr1_3:36401545-36401564 Msa0116920:intron 30.0%
ACTAGTAAATAGCATTTACC+TGG + chr1_3:36401566-36401585 None:intergenic 30.0%
! CTTGTTCTTCATCATCATTT+TGG - chr1_3:36401618-36401637 Msa0116920:intron 30.0%
TTTAGTTAACTGTGTATGGA+TGG + chr1_3:36401649-36401668 None:intergenic 30.0%
GAAAGATTTAACGAGATAGT+TGG - chr1_3:36401689-36401708 Msa0116920:intron 30.0%
TATCTTGCCAAAGCTATATT+TGG - chr1_3:36401840-36401859 Msa0116920:intron 30.0%
TCAAAAGCCAAATATAGCTT+TGG + chr1_3:36401850-36401869 None:intergenic 30.0%
! TTGAACCTTTTATAAGTGAG+AGG - chr1_3:36401936-36401955 Msa0116920:intron 30.0%
GTTACTATAACCTACTTGAA+AGG - chr1_3:36402121-36402140 Msa0116920:intron 30.0%
TTACCATGATCTTTCTTATG+TGG - chr1_3:36402168-36402187 Msa0116920:intron 30.0%
TGATGTCATGAATATTGTGA+TGG + chr1_3:36402325-36402344 None:intergenic 30.0%
!! CCAGGAATATTTTTATGAGG+GGG + chr1_3:36399976-36399995 None:intergenic 35.0%
!! GCCAGGAATATTTTTATGAG+GGG + chr1_3:36399977-36399996 None:intergenic 35.0%
!! GAGCCAGGAATATTTTTATG+AGG + chr1_3:36399979-36399998 None:intergenic 35.0%
ATTTGCCTATAATCGTGGAT+TGG - chr1_3:36400113-36400132 Msa0116920:intron 35.0%
CTAACATGCACAAGTTATGT+AGG - chr1_3:36400245-36400264 Msa0116920:intron 35.0%
AGCGACTGTTAAGACAAATT+TGG - chr1_3:36400354-36400373 Msa0116920:intron 35.0%
AAAATGTCAACTCAATGAGC+TGG + chr1_3:36400392-36400411 None:intergenic 35.0%
AGAGAGAAACAAAGAGAAAG+AGG - chr1_3:36400453-36400472 Msa0116920:CDS 35.0%
GAGAGAAACAAAGAGAAAGA+GGG - chr1_3:36400454-36400473 Msa0116920:CDS 35.0%
TGTTTATTGTTCCTACTGGA+TGG + chr1_3:36400537-36400556 None:intergenic 35.0%
! ATTTTCCAGGCTTTTCCTTT+CGG + chr1_3:36400563-36400582 None:intergenic 35.0%
! TTCACTTGCTCATATTTTCC+AGG + chr1_3:36400576-36400595 None:intergenic 35.0%
ATTGAGCTTAGATACGAGTT+AGG - chr1_3:36400645-36400664 Msa0116920:intron 35.0%
TTGAGCTTAGATACGAGTTA+GGG - chr1_3:36400646-36400665 Msa0116920:intron 35.0%
GAACTGTGTAGAAGAGAATT+CGG - chr1_3:36400672-36400691 Msa0116920:intron 35.0%
AACTGTGTAGAAGAGAATTC+GGG - chr1_3:36400673-36400692 Msa0116920:intron 35.0%
ATTCGGGAAAAATTTACGGA+AGG - chr1_3:36400689-36400708 Msa0116920:intron 35.0%
TTCATTGAAGGAGACATATG+AGG - chr1_3:36400884-36400903 Msa0116920:intron 35.0%
CTTATTATGGAACACTGTGA+AGG - chr1_3:36400924-36400943 Msa0116920:intron 35.0%
GCTTGGTCGGATATATAATA+TGG - chr1_3:36401120-36401139 Msa0116920:intron 35.0%
GGAGTTAAAATGTTAGGACA+AGG - chr1_3:36401295-36401314 Msa0116920:intron 35.0%
! GTGTAAATTTTCCCTTCTGT+TGG - chr1_3:36401376-36401395 Msa0116920:intron 35.0%
! TTTTAGATGTGCCACAAACA+TGG - chr1_3:36401437-36401456 Msa0116920:intron 35.0%
TCTGCAAACAAAAAGTTCTC+GGG + chr1_3:36401485-36401504 None:intergenic 35.0%
GTCTGCAAACAAAAAGTTCT+CGG + chr1_3:36401486-36401505 None:intergenic 35.0%
!! CTTTTTGTTTGCAGACAAGA+AGG - chr1_3:36401490-36401509 Msa0116920:intron 35.0%
AGTTGGAAGTCCATATTACA+TGG - chr1_3:36401706-36401725 Msa0116920:intron 35.0%
CACTCCAGATATCAATTTCA+GGG + chr1_3:36401760-36401779 None:intergenic 35.0%
!! TTTCTGGTGTCAATCCTTTT+TGG - chr1_3:36401804-36401823 Msa0116920:intron 35.0%
!! TTCTGGTGTCAATCCTTTTT+GGG - chr1_3:36401805-36401824 Msa0116920:intron 35.0%
!!! GCTATATTTGGCTTTTGAGT+CGG - chr1_3:36401852-36401871 Msa0116920:intron 35.0%
! AGTATCCTAGATGTGGATTT+TGG + chr1_3:36401895-36401914 None:intergenic 35.0%
! AAAATCCACATCTAGGATAC+TGG - chr1_3:36401894-36401913 Msa0116920:intron 35.0%
! TCTTAAGGCGTTAGGTTTAT+GGG + chr1_3:36401963-36401982 None:intergenic 35.0%
! TTCTTAAGGCGTTAGGTTTA+TGG + chr1_3:36401964-36401983 None:intergenic 35.0%
ACCTAACGCCTTAAGAATTT+AGG - chr1_3:36401967-36401986 Msa0116920:intron 35.0%
! ACCTAAATTCTTAAGGCGTT+AGG + chr1_3:36401971-36401990 None:intergenic 35.0%
AGAAACCATACAAGTGAGTT+GGG + chr1_3:36402006-36402025 None:intergenic 35.0%
AAAATATGTGCGCCTCTATT+AGG + chr1_3:36402069-36402088 None:intergenic 35.0%
! ATTACAACACCCTTTCAAGT+AGG + chr1_3:36402134-36402153 None:intergenic 35.0%
CATCCACATAAGAAAGATCA+TGG + chr1_3:36402174-36402193 None:intergenic 35.0%
CTTTCTTATGTGGATGAAGA+TGG - chr1_3:36402178-36402197 Msa0116920:intron 35.0%
!! AGATGGTATTTTTGTGCTTG+TGG - chr1_3:36402195-36402214 Msa0116920:intron 35.0%
TTAAAATGCAGAAACTGAGC+AGG - chr1_3:36402399-36402418 Msa0116920:intron 35.0%
TAAAATGCAGAAACTGAGCA+GGG - chr1_3:36402400-36402419 Msa0116920:intron 35.0%
TTCGCATTATCAGAAACCTT+TGG + chr1_3:36402478-36402497 None:intergenic 35.0%
GATCAAGCATCTTCTTAACA+AGG + chr1_3:36402504-36402523 None:intergenic 35.0%
ACTAAGTAACAGGCACTACA+TGG + chr1_3:36399697-36399716 None:intergenic 40.0%
CGACAGAGAAACTAAGTAAC+AGG + chr1_3:36399707-36399726 None:intergenic 40.0%
CCCCCTCATAAAAATATTCC+TGG - chr1_3:36399973-36399992 Msa0116920:intron 40.0%
! TTTTATAACCGGACTTGCAG+TGG + chr1_3:36400004-36400023 None:intergenic 40.0%
GTGAAAACAAACCACTTGTG+TGG - chr1_3:36400048-36400067 Msa0116920:intron 40.0%
! TTTTAACCAGTCCACACAAG+TGG + chr1_3:36400062-36400081 None:intergenic 40.0%
ACAGTCGCTTAAAACAAAGG+TGG + chr1_3:36400343-36400362 None:intergenic 40.0%
CACAGCAATTTCCCATCAAT+TGG + chr1_3:36400509-36400528 None:intergenic 40.0%
GTGATATTAAAGGAACCCAC+TGG - chr1_3:36400615-36400634 Msa0116920:intron 40.0%
GAATTAGGGAGAGGAGAATT+TGG - chr1_3:36400711-36400730 Msa0116920:intron 40.0%
GAAGAGAGGTTGAGATTATG+AGG - chr1_3:36400835-36400854 Msa0116920:intron 40.0%
! GATGGATTTAACCACACTTG+CGG + chr1_3:36401003-36401022 None:intergenic 40.0%
ATCCATCGTCCAAATTGTTC+AGG - chr1_3:36401016-36401035 Msa0116920:intron 40.0%
! TTGGTAAAAGAGCTGCTTTG+AGG - chr1_3:36401221-36401240 Msa0116920:intron 40.0%
!!! GGTATACTTTGTTTTCTGGC+TGG - chr1_3:36401316-36401335 Msa0116920:intron 40.0%
ACAAACATGGTGTGATGCAT+CGG - chr1_3:36401450-36401469 Msa0116920:intron 40.0%
ATGGCCCTGAAATTGATATC+TGG - chr1_3:36401753-36401772 Msa0116920:intron 40.0%
GCACTCCAGATATCAATTTC+AGG + chr1_3:36401761-36401780 None:intergenic 40.0%
! GAAATTGATATCTGGAGTGC+TGG - chr1_3:36401761-36401780 Msa0116920:intron 40.0%
AAAAACCAACCTGCCCAAAA+AGG + chr1_3:36401821-36401840 None:intergenic 40.0%
ACCAACCAAAATCCACATCT+AGG - chr1_3:36401887-36401906 Msa0116920:intron 40.0%
!! TCCTAGATGTGGATTTTGGT+TGG + chr1_3:36401891-36401910 None:intergenic 40.0%
CATAACCAGTATCCTAGATG+TGG + chr1_3:36401902-36401921 None:intergenic 40.0%
! AGGATACTGGTTATGTAGCA+AGG - chr1_3:36401907-36401926 Msa0116920:intron 40.0%
! GGATACTGGTTATGTAGCAA+GGG - chr1_3:36401908-36401927 Msa0116920:intron 40.0%
TGGGTCCTCTCACTTATAAA+AGG + chr1_3:36401944-36401963 None:intergenic 40.0%
GAGAAACCATACAAGTGAGT+TGG + chr1_3:36402007-36402026 None:intergenic 40.0%
TTGACTTTACAAGGGTTCCA+TGG - chr1_3:36402452-36402471 Msa0116920:intron 40.0%
TTATCAGAAACCTTTGGCCA+TGG + chr1_3:36402472-36402491 None:intergenic 40.0%
AACAAACCACTTGTGTGGAC+TGG - chr1_3:36400053-36400072 Msa0116920:intron 45.0%
AACTCAATGAGCTGGTTGCT+TGG + chr1_3:36400384-36400403 None:intergenic 45.0%
CAAAACCGAAAGGAAAAGCC+TGG - chr1_3:36400555-36400574 Msa0116920:CDS 45.0%
AGCTTAGATACGAGTTAGGG+AGG - chr1_3:36400649-36400668 Msa0116920:intron 45.0%
GCTTAGATACGAGTTAGGGA+GGG - chr1_3:36400650-36400669 Msa0116920:intron 45.0%
TTACGGAAGGAATTAGGGAG+AGG - chr1_3:36400702-36400721 Msa0116920:intron 45.0%
GTTGATCGTATTGTCGCTAG+AGG - chr1_3:36400957-36400976 Msa0116920:intron 45.0%
GACCTGAACAATTTGGACGA+TGG + chr1_3:36401021-36401040 None:intergenic 45.0%
AGAGGGAGACCTGAACAATT+TGG + chr1_3:36401028-36401047 None:intergenic 45.0%
GATGCATCACACCATGTTTG+TGG + chr1_3:36401451-36401470 None:intergenic 45.0%
CAAACATGGTGTGATGCATC+GGG - chr1_3:36401451-36401470 Msa0116920:intron 45.0%
GTTAACTGTGTATGGATGGC+AGG + chr1_3:36401645-36401664 None:intergenic 45.0%
ACTTCAGGGGCCATGTAATA+TGG + chr1_3:36401719-36401738 None:intergenic 45.0%
!! TCAATCCTTTTTGGGCAGGT+TGG - chr1_3:36401813-36401832 Msa0116920:intron 45.0%
TGATGCCCAACTCACTTGTA+TGG - chr1_3:36401998-36402017 Msa0116920:intron 45.0%
!! CTTACTGCACAGGAAGTGTT+AGG - chr1_3:36402541-36402560 Msa0116920:intron 45.0%
TGGAATGAGGTCGCTCATGA+TGG + chr1_3:36400152-36400171 None:intergenic 50.0%
TCTCTCTCTCTCTCTCTCTC+TGG + chr1_3:36400422-36400441 None:intergenic 50.0%
GCTGTGCAAATCCATCCAGT+AGG - chr1_3:36400523-36400542 Msa0116920:CDS 50.0%
AGCTCAATCTCTCGACCAGT+GGG + chr1_3:36400633-36400652 None:intergenic 50.0%
AAGCTCAATCTCTCGACCAG+TGG + chr1_3:36400634-36400653 None:intergenic 50.0%
!! GGTGTCAATCCTTTTTGGGC+AGG - chr1_3:36401809-36401828 Msa0116920:intron 50.0%
CTGGTTATGTAGCAAGGGTG+AGG - chr1_3:36401913-36401932 Msa0116920:intron 50.0%
TGGTTTCTCTGAGCCCAATG+TGG - chr1_3:36402018-36402037 Msa0116920:intron 50.0%
CTCTCCTCGTGACCTAATAG+AGG - chr1_3:36402054-36402073 Msa0116920:intron 50.0%
TACAAGGGTTCCATGGCCAA+AGG - chr1_3:36402459-36402478 Msa0116920:intron 50.0%
ACACTTCCTGTGCAGTAAGC+CGG + chr1_3:36402540-36402559 None:intergenic 50.0%
CTCAGGGGATCGTCCACATT+GGG + chr1_3:36402034-36402053 None:intergenic 55.0%
TAGGTCACGAGGAGAGCTCA+GGG + chr1_3:36402050-36402069 None:intergenic 55.0%
TTAGGTCACGAGGAGAGCTC+AGG + chr1_3:36402051-36402070 None:intergenic 55.0%
TGCGCCTCTATTAGGTCACG+AGG + chr1_3:36402061-36402080 None:intergenic 55.0%
TTGATCCTGACCCAAAGCGC+CGG - chr1_3:36402518-36402537 Msa0116920:intron 55.0%
! TGGCTCTGCCACTGCAAGTC+CGG - chr1_3:36399993-36400012 Msa0116920:intron 60.0%
CACACTTGCGGCTGCGTGTT+CGG + chr1_3:36400991-36401010 None:intergenic 60.0%
GCTCAGGGGATCGTCCACAT+TGG + chr1_3:36402035-36402054 None:intergenic 60.0%
AGGTCACGAGGAGAGCTCAG+GGG + chr1_3:36402049-36402068 None:intergenic 60.0%
GTGCAGTAAGCCGGCGCTTT+GGG + chr1_3:36402531-36402550 None:intergenic 60.0%
TGTGCAGTAAGCCGGCGCTT+TGG + chr1_3:36402532-36402551 None:intergenic 60.0%
!! AAAGCGCCGGCTTACTGCAC+AGG - chr1_3:36402531-36402550 Msa0116920:intron 60.0%
GGACTTGCAGTGGCAGAGCC+AGG + chr1_3:36399994-36400013 None:intergenic 65.0%
CGAACACGCAGCCGCAAGTG+TGG - chr1_3:36400989-36401008 Msa0116920:intron 65.0%
! GTAAGCCGGCGCTTTGGGTC+AGG + chr1_3:36402526-36402545 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 36399685 36402582 36399685 ID=Msa0116920;Name=Msa0116920
chr1_3 mRNA 36399685 36402582 36399685 ID=Msa0116920-mRNA-1;Parent=Msa0116920;Name=Msa0116920-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0|0|0.4|0.25|0.4|5|0|112
chr1_3 exon 36402576 36402582 36402576 ID=Msa0116920-mRNA-1:exon:11754;Parent=Msa0116920-mRNA-1
chr1_3 exon 36402476 36402483 36402476 ID=Msa0116920-mRNA-1:exon:11753;Parent=Msa0116920-mRNA-1
chr1_3 exon 36401111 36401117 36401111 ID=Msa0116920-mRNA-1:exon:11752;Parent=Msa0116920-mRNA-1
chr1_3 exon 36400437 36400580 36400437 ID=Msa0116920-mRNA-1:exon:11751;Parent=Msa0116920-mRNA-1
chr1_3 exon 36399685 36399857 36399685 ID=Msa0116920-mRNA-1:exon:11750;Parent=Msa0116920-mRNA-1
chr1_3 CDS 36402576 36402582 36402576 ID=Msa0116920-mRNA-1:cds;Parent=Msa0116920-mRNA-1
chr1_3 CDS 36402476 36402483 36402476 ID=Msa0116920-mRNA-1:cds;Parent=Msa0116920-mRNA-1
chr1_3 CDS 36401111 36401117 36401111 ID=Msa0116920-mRNA-1:cds;Parent=Msa0116920-mRNA-1
chr1_3 CDS 36400437 36400580 36400437 ID=Msa0116920-mRNA-1:cds;Parent=Msa0116920-mRNA-1
chr1_3 CDS 36399685 36399857 36399685 ID=Msa0116920-mRNA-1:cds;Parent=Msa0116920-mRNA-1
Gene Sequence

>Msa0116920

ATGGCACTATCACTTTTGAAAAGTGAAAGATTTAACGAGATAGTTGGAAGTCCATATTACATGGCCCCTGAAGTATTAAAAAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGAGTTATTCTTTACATCTTACTTTCTGGTGTCAATCCTTTTTGGGCAGAAACTGAGCAGGGAGTTGCTCAAGCAATTTTAAGATCTTTTATTGACTTTACAAGGGTTCCATGGCCAAAGGTTTCTGATAATGCGAAAGACCTTGTTAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTAGGTAATATGCAGTTCAAATAA
Protein sequence

>Msa0116920

MALSLLKSERFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLSGVNPFWAETEQGVAQAILRSFIDFTRVPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLGNMQFK*