AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0117830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117830 MtrunA17_Chr1g0175191 66.038 212 10 4 1 152 145 354 2.20e-65 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 22 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGAACGGCAAGAGGAAT+TGG 0.385497 1_3:-39740288 Msa0117830:CDS
CGTTTGAGTAACTCCTCAAT+TGG 0.395839 1_3:+39740239 None:intergenic
TCATCATGATCAGGTGCATC+AGG 0.404662 1_3:+39741481 None:intergenic
GGCAGCTTTGCACAGCGAAA+TGG 0.419767 1_3:-39740267 Msa0117830:CDS
CCACCAACATTAGCTTCCTT+AGG 0.444869 1_3:+39741586 None:intergenic
ATTAGCATCCACAAGATTCT+CGG 0.460988 1_3:+39741687 None:intergenic
TCATATTCTTCATCATGATC+AGG 0.480587 1_3:+39741472 None:intergenic
AACGACTCCAGCACGGTCCT+CGG 0.521854 1_3:-39739260 Msa0117830:intron
CGAAATGGATCTTCCAATTG+AGG 0.526693 1_3:-39740252 Msa0117830:CDS
AGACATTATCAATGAACCTA+AGG 0.541993 1_3:-39741602 Msa0117830:CDS
AAATAATCTATCTCAAAATG+AGG 0.555369 1_3:-39739112 Msa0117830:CDS
GAACCTAAGGAAGCTAATGT+TGG 0.567654 1_3:-39741589 Msa0117830:intron
TGTACAATCTGACGATGTAT+CGG 0.585579 1_3:-39741449 Msa0117830:intron
AACTAAAGAAGAACGGCAAG+AGG 0.597437 1_3:-39740294 Msa0117830:CDS
AACTTACACAACGTCGACCG+AGG 0.601690 1_3:+39739243 None:intergenic
CTCTTATAACTAAAGAAGAA+CGG 0.602781 1_3:-39740301 Msa0117830:CDS
TCAATCTGAAAATCTCAAAG+AGG 0.608393 1_3:-39739085 Msa0117830:CDS
TAATTACAGGATGACAGTAA+CGG 0.608571 1_3:-39739153 Msa0117830:intron
GCAAACGCTCGAGGAAGATG+AGG 0.634088 1_3:-39740324 Msa0117830:CDS
TGATGATGAGCAAACGCTCG+AGG 0.644327 1_3:-39740333 Msa0117830:CDS
TTTCAATGCAAAGATATAGG+CGG 0.660123 1_3:-39741625 Msa0117830:CDS
TATGTTGGCCGAGAATCTTG+TGG 0.707455 1_3:-39741695 Msa0117830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACTTTGTTTTAAAAAAAT+AGG - chr1_3:39739974-39739993 Msa0117830:intron 10.0%
!!! AACTTTGTTTTAAAAAAATA+GGG - chr1_3:39739975-39739994 Msa0117830:intron 10.0%
!!! ACTTTGTTTTAAAAAAATAG+GGG - chr1_3:39739976-39739995 Msa0117830:intron 15.0%
!! TTAAAACAACATTATGTAAT+AGG - chr1_3:39740180-39740199 Msa0117830:intron 15.0%
!!! AAATGGTTTTCTTTTAAAAA+AGG + chr1_3:39741111-39741130 None:intergenic 15.0%
!!! TTTTTTAAAAGAAAACCATT+TGG - chr1_3:39741110-39741129 Msa0117830:intron 15.0%
!! AATTTCTACTTGTAACTTTA+AGG + chr1_3:39739180-39739199 None:intergenic 20.0%
!! TATAAAGTAGAAAATCTATC+CGG + chr1_3:39739389-39739408 None:intergenic 20.0%
!! AAATTCCATAATAATGATGA+TGG + chr1_3:39739444-39739463 None:intergenic 20.0%
!!! ATTAGTTTTTCCAACAAATA+TGG + chr1_3:39739568-39739587 None:intergenic 20.0%
!! AATAACTATTCCAACAAATA+TGG + chr1_3:39739647-39739666 None:intergenic 20.0%
!!! GAAATTTTATCAGTTAAAAG+TGG - chr1_3:39740005-39740024 Msa0117830:intron 20.0%
!!! ATACAATTTTTTTTAGCACA+TGG + chr1_3:39740158-39740177 None:intergenic 20.0%
!! ATAGAATATTTCTTATCCTA+GGG + chr1_3:39740943-39740962 None:intergenic 20.0%
!! AATAGAATATTTCTTATCCT+AGG + chr1_3:39740944-39740963 None:intergenic 20.0%
!! AGGATAAGAAATATTCTATT+TGG - chr1_3:39740944-39740963 Msa0117830:intron 20.0%
!! AGAATTCCATAATGAAAAAA+AGG + chr1_3:39741009-39741028 None:intergenic 20.0%
!!! TTTTGAGATAGATTATTTGT+TGG + chr1_3:39741612-39741631 None:intergenic 20.0%
!! AAATAATCTATCTCAAAATG+AGG - chr1_3:39741614-39741633 Msa0117830:CDS 20.0%
!! AGTTTTCAATGCAAAGATAT+AGG - chr1_3:39739098-39739117 Msa0117830:CDS 25.0%
! AAAAGTAAAGAATCTGAGAA+TGG + chr1_3:39739325-39739344 None:intergenic 25.0%
! ATAAAGTAGAAAATCTATCC+GGG + chr1_3:39739388-39739407 None:intergenic 25.0%
!! CTTGCTAGTTTAGATATATA+AGG - chr1_3:39739745-39739764 Msa0117830:intron 25.0%
!!! AAATAACATAGCTTTATCTC+TGG + chr1_3:39739806-39739825 None:intergenic 25.0%
!!! TTTTAAAAAAATAGGGGAAG+TGG - chr1_3:39739982-39740001 Msa0117830:intron 25.0%
! TTTAAAAAAATAGGGGAAGT+GGG - chr1_3:39739983-39740002 Msa0117830:intron 25.0%
! GAAAAGAAAATTCACACTTA+AGG + chr1_3:39740119-39740138 None:intergenic 25.0%
!! GATATCTGCATTTTCTAATT+AGG - chr1_3:39740202-39740221 Msa0117830:intron 25.0%
! AACTTCCAATAGAAAAATGA+TGG + chr1_3:39740272-39740291 None:intergenic 25.0%
! ATCATGTTTATTGTTCCAAA+TGG - chr1_3:39740325-39740344 Msa0117830:CDS 25.0%
! TCATGTTTATTGTTCCAAAT+GGG - chr1_3:39740326-39740345 Msa0117830:CDS 25.0%
! ATTAAGTCCATATATGAGAT+TGG + chr1_3:39740363-39740382 None:intergenic 25.0%
! TATATGGACTTAATATTTCC+AGG - chr1_3:39740369-39740388 Msa0117830:intron 25.0%
! CTCTTATAACTAAAGAAGAA+CGG - chr1_3:39740425-39740444 Msa0117830:intron 25.0%
! CTCATATCATTAAGAAGAAA+AGG - chr1_3:39740580-39740599 Msa0117830:intron 25.0%
! AGTTGGAATTTATAGATAAC+TGG - chr1_3:39740680-39740699 Msa0117830:intron 25.0%
! AGAAATATTCTATTTGGTAG+AGG - chr1_3:39740950-39740969 Msa0117830:intron 25.0%
! GAAATATTCTATTTGGTAGA+GGG - chr1_3:39740951-39740970 Msa0117830:intron 25.0%
!!! AACCAACCTTTTTTTCATTA+TGG - chr1_3:39741000-39741019 Msa0117830:intron 25.0%
! TTCCATAATGAAAAAAAGGT+TGG + chr1_3:39741005-39741024 None:intergenic 25.0%
! TTTAAAAGAAAACCATTTGG+TGG - chr1_3:39741113-39741132 Msa0117830:intron 25.0%
! TGTCTAATATATGCAGAAAA+TGG - chr1_3:39741412-39741431 Msa0117830:intron 25.0%
!!! AATGCTCAGTTTTTAATTAC+AGG - chr1_3:39741560-39741579 Msa0117830:intron 25.0%
!! ATCAAATGGAACATTTTCAT+TGG + chr1_3:39741682-39741701 None:intergenic 25.0%
TTTCAATGCAAAGATATAGG+CGG - chr1_3:39739101-39739120 Msa0117830:CDS 30.0%
AGACATTATCAATGAACCTA+AGG - chr1_3:39739124-39739143 Msa0117830:CDS 30.0%
GTTTATACTCTGCTACAAAA+TGG + chr1_3:39739226-39739245 None:intergenic 30.0%
TCATATTCTTCATCATGATC+AGG + chr1_3:39739257-39739276 None:intergenic 30.0%
GAGAGACAAGTTAAAATCTT+AGG + chr1_3:39739360-39739379 None:intergenic 30.0%
ATTTATTACAGAACACTGAC+AGG - chr1_3:39739460-39739479 Msa0117830:intron 30.0%
ATGGATTTCAGTCAAACAAT+GGG + chr1_3:39739549-39739568 None:intergenic 30.0%
TATGGATTTCAGTCAAACAA+TGG + chr1_3:39739550-39739569 None:intergenic 30.0%
TGACTGAAATCCATATTTGT+TGG - chr1_3:39739555-39739574 Msa0117830:intron 30.0%
AGTAACAAAACATATGAAGC+AGG + chr1_3:39739599-39739618 None:intergenic 30.0%
TTGTTTCAATGTCAGAATGA+AGG + chr1_3:39739713-39739732 None:intergenic 30.0%
AAAGCTTATATCCCACTAAA+GGG + chr1_3:39739935-39739954 None:intergenic 30.0%
AAAAGCTTATATCCCACTAA+AGG + chr1_3:39739936-39739955 None:intergenic 30.0%
! TTAGTGGGATATAAGCTTTT+TGG - chr1_3:39739936-39739955 Msa0117830:intron 30.0%
!! TGCAACCATCATTTTTCTAT+TGG - chr1_3:39740264-39740283 Msa0117830:CDS 30.0%
TGATAATCAGATGAGAAAGA+CGG + chr1_3:39740309-39740328 None:intergenic 30.0%
AGAAAAGGTTCAATACAAGT+AGG - chr1_3:39740595-39740614 Msa0117830:intron 30.0%
TAGGAGAATACTCAAAAACT+TGG - chr1_3:39740614-39740633 Msa0117830:intron 30.0%
TATCAGGTGACAAGAAAATA+TGG + chr1_3:39740647-39740666 None:intergenic 30.0%
ATCTATAAATTCCAACTTCG+AGG + chr1_3:39740677-39740696 None:intergenic 30.0%
TGAATCAGATTCTAGTACTT+TGG + chr1_3:39740773-39740792 None:intergenic 30.0%
TGATTACCTTAATAGACCAT+TGG - chr1_3:39741162-39741181 Msa0117830:intron 30.0%
AATGATCCAATGGTCTATTA+AGG + chr1_3:39741171-39741190 None:intergenic 30.0%
TGGCATAATAAATGATCCAA+TGG + chr1_3:39741181-39741200 None:intergenic 30.0%
TGGATCATTTATTATGCCAT+TGG - chr1_3:39741182-39741201 Msa0117830:intron 30.0%
TTCTTTGCAATTAGGAGAAT+TGG - chr1_3:39741206-39741225 Msa0117830:intron 30.0%
TAATTACAGGATGACAGTAA+CGG - chr1_3:39741573-39741592 Msa0117830:intron 30.0%
TCAATCTGAAAATCTCAAAG+AGG - chr1_3:39741641-39741660 Msa0117830:CDS 30.0%
TCTTCGTCAGAAAAATCAAA+TGG + chr1_3:39741696-39741715 None:intergenic 30.0%
ATTAGCATCCACAAGATTCT+CGG + chr1_3:39739042-39739061 None:intergenic 35.0%
! ATGGATTGAGAAGTTAGAGA+AGG + chr1_3:39739207-39739226 None:intergenic 35.0%
TGTACAATCTGACGATGTAT+CGG - chr1_3:39739277-39739296 Msa0117830:intron 35.0%
GCATGCCATCATCATTATTA+TGG - chr1_3:39739436-39739455 Msa0117830:intron 35.0%
!! ACTCTGCATGAGCTTTAAAA+TGG - chr1_3:39739502-39739521 Msa0117830:intron 35.0%
AAACATATGAAGCAGGAATC+TGG + chr1_3:39739592-39739611 None:intergenic 35.0%
TCGACTGAATCCATATTTGT+TGG - chr1_3:39739634-39739653 Msa0117830:intron 35.0%
AATTTCCATTATCATGCAGC+AGG + chr1_3:39739678-39739697 None:intergenic 35.0%
TATATAAGGTTCCACTACAC+AGG - chr1_3:39739759-39739778 Msa0117830:intron 35.0%
! TCCACTACACAGGTTTATTT+TGG - chr1_3:39739769-39739788 Msa0117830:intron 35.0%
TCAGTTAAAAGTGGCACTAA+TGG - chr1_3:39740014-39740033 Msa0117830:intron 35.0%
TACTGGTCCAATCTCATATA+TGG - chr1_3:39740353-39740372 Msa0117830:intron 35.0%
AAACGTTATGCTGGAGATAA+AGG - chr1_3:39740505-39740524 Msa0117830:intron 35.0%
AAATCGGATAGCTTCCAAAA+GGG - chr1_3:39740825-39740844 Msa0117830:intron 35.0%
ATTCTATTTGGTAGAGGGAT+AGG - chr1_3:39740956-39740975 Msa0117830:intron 35.0%
!! TCTTTGTTGTTCTCACTTAG+TGG - chr1_3:39741026-39741045 Msa0117830:intron 35.0%
! AGTTTTACTTAGCGATAGCT+AGG - chr1_3:39741071-39741090 Msa0117830:intron 35.0%
CCTAATTGCAAAGAAACCAA+TGG + chr1_3:39741201-39741220 None:intergenic 35.0%
!! CCATTGGTTTCTTTGCAATT+AGG - chr1_3:39741198-39741217 Msa0117830:intron 35.0%
AAGTTATGAACCCACTTAGT+GGG - chr1_3:39741343-39741362 Msa0117830:intron 35.0%
!! TGTATGCTTGTTTCTGACAT+AGG - chr1_3:39741387-39741406 Msa0117830:intron 35.0%
! TTTAATTTCACCGCGTTGAA+TGG - chr1_3:39741513-39741532 Msa0117830:intron 35.0%
TTGAATGGCATAGTGAGTTA+AGG - chr1_3:39741528-39741547 Msa0117830:intron 35.0%
TGAATGGCATAGTGAGTTAA+GGG - chr1_3:39741529-39741548 Msa0117830:intron 35.0%
! TCTGCAGAATTTTTCTCTGC+TGG + chr1_3:39739068-39739087 None:intergenic 40.0%
GAACCTAAGGAAGCTAATGT+TGG - chr1_3:39739137-39739156 Msa0117830:CDS 40.0%
CTAAGGAAGCTAATGTTGGT+GGG - chr1_3:39739141-39739160 Msa0117830:CDS 40.0%
AGAATCTGAGAATGGTCTTC+AGG + chr1_3:39739317-39739336 None:intergenic 40.0%
AAAGCTCATGCAGAGTGAAA+TGG + chr1_3:39739498-39739517 None:intergenic 40.0%
ATTATCATGCAGCAGGAATC+TGG + chr1_3:39739671-39739690 None:intergenic 40.0%
AGATTCCTGCTGCATGATAA+TGG - chr1_3:39739670-39739689 Msa0117830:intron 40.0%
GCCAAAATAAACCTGTGTAG+TGG + chr1_3:39739773-39739792 None:intergenic 40.0%
ATGTAGTTGAGTCCCTTTAG+TGG - chr1_3:39739920-39739939 Msa0117830:intron 40.0%
TGTAGTTGAGTCCCTTTAGT+GGG - chr1_3:39739921-39739940 Msa0117830:intron 40.0%
TACTTAGCTCAAATCCCTTC+GGG + chr1_3:39740055-39740074 None:intergenic 40.0%
GTACTTAGCTCAAATCCCTT+CGG + chr1_3:39740056-39740075 None:intergenic 40.0%
AATACTCTTTCATGCGCAGA+TGG + chr1_3:39740243-39740262 None:intergenic 40.0%
TCAGATGAGAAAGACGGTAA+TGG + chr1_3:39740303-39740322 None:intergenic 40.0%
TGTTCCAAATGGGTGAATAC+TGG - chr1_3:39740336-39740355 Msa0117830:CDS 40.0%
AACTAAAGAAGAACGGCAAG+AGG - chr1_3:39740432-39740451 Msa0117830:intron 40.0%
CGAAATGGATCTTCCAATTG+AGG - chr1_3:39740474-39740493 Msa0117830:intron 40.0%
CGTTTGAGTAACTCCTCAAT+TGG + chr1_3:39740490-39740509 None:intergenic 40.0%
GAGTTACTCAAACGTTATGC+TGG - chr1_3:39740496-39740515 Msa0117830:intron 40.0%
ACTTCGAGGTGAAGTTTATC+AGG + chr1_3:39740663-39740682 None:intergenic 40.0%
GATAAACTTCACCTCGAAGT+TGG - chr1_3:39740663-39740682 Msa0117830:intron 40.0%
TAAAACTCAGAAGCTCCATG+TGG - chr1_3:39740727-39740746 Msa0117830:intron 40.0%
CAAATCGGATAGCTTCCAAA+AGG - chr1_3:39740824-39740843 Msa0117830:intron 40.0%
!!! GGTTTTAGAGGAAGACTTGA+TGG + chr1_3:39740851-39740870 None:intergenic 40.0%
!!! AGCACATATGTCGGTTTTAG+AGG + chr1_3:39740863-39740882 None:intergenic 40.0%
! TTGTTGTTCTCACTTAGTGG+AGG - chr1_3:39741029-39741048 Msa0117830:intron 40.0%
TGTTGTTCTCACTTAGTGGA+GGG - chr1_3:39741030-39741049 Msa0117830:intron 40.0%
TTACTTAGCGATAGCTAGGA+TGG - chr1_3:39741075-39741094 Msa0117830:intron 40.0%
TGCAATTAGGAGAATTGGCA+AGG - chr1_3:39741211-39741230 Msa0117830:intron 40.0%
GGTGGACAAATAGTTAGAAC+TGG - chr1_3:39741264-39741283 Msa0117830:intron 40.0%
AAGAACTTGCATCAGGTATG+CGG - chr1_3:39741304-39741323 Msa0117830:intron 40.0%
CAAGTTATGAACCCACTTAG+TGG - chr1_3:39741342-39741361 Msa0117830:intron 40.0%
CAAGCATTATCCCACTAAGT+GGG + chr1_3:39741356-39741375 None:intergenic 40.0%
! CCACCAACATTAGCTTCCTT+AGG + chr1_3:39739143-39739162 None:intergenic 45.0%
CCTAAGGAAGCTAATGTTGG+TGG - chr1_3:39739140-39739159 Msa0117830:CDS 45.0%
TCATCATGATCAGGTGCATC+AGG + chr1_3:39739248-39739267 None:intergenic 45.0%
! TAACTTGTCTCTCAGAAGCC+CGG - chr1_3:39739367-39739386 Msa0117830:intron 45.0%
GAACACTGACAGGTTCCAAT+TGG - chr1_3:39739470-39739489 Msa0117830:intron 45.0%
CAGAGTGAAATGGCACCAAT+TGG + chr1_3:39739488-39739507 None:intergenic 45.0%
ACTTAGCTCAAATCCCTTCG+GGG + chr1_3:39740054-39740073 None:intergenic 45.0%
CTAAGTACCTTGAAGCTGCA+AGG - chr1_3:39740068-39740087 Msa0117830:intron 45.0%
TGGACCAGTATTCACCCATT+TGG + chr1_3:39740343-39740362 None:intergenic 45.0%
AGAAGAACGGCAAGAGGAAT+TGG - chr1_3:39740438-39740457 Msa0117830:intron 45.0%
ACGTACCTCCTGATTCACAA+AGG - chr1_3:39740911-39740930 Msa0117830:intron 45.0%
ATTAGGAGAATTGGCAAGGC+AGG - chr1_3:39741215-39741234 Msa0117830:intron 45.0%
AGTCCAGAGAGTAGTGAAGA+TGG - chr1_3:39741243-39741262 Msa0117830:intron 45.0%
GTTAGAACTGGTGATCCTGA+TGG - chr1_3:39741276-39741295 Msa0117830:intron 45.0%
CCAAGCATTATCCCACTAAG+TGG + chr1_3:39741357-39741376 None:intergenic 45.0%
CCACTTAGTGGGATAATGCT+TGG - chr1_3:39741354-39741373 Msa0117830:intron 45.0%
ATGTACAAACGACTCCAGCA+CGG - chr1_3:39741459-39741478 Msa0117830:CDS 45.0%
ACTCACTATGCCATTCAACG+CGG + chr1_3:39741526-39741545 None:intergenic 45.0%
CATTTACAACCGTCCCCGAA+GGG - chr1_3:39740038-39740057 Msa0117830:intron 50.0%
!! AGCTTAGCCTTGCAGCTTCA+AGG + chr1_3:39740078-39740097 None:intergenic 50.0%
GCGTTTGCTCATCATCATCC+TGG + chr1_3:39740390-39740409 None:intergenic 50.0%
! TGATGATGAGCAAACGCTCG+AGG - chr1_3:39740393-39740412 Msa0117830:intron 50.0%
TCCATGTGGTTGCGTTGAGA+GGG - chr1_3:39740741-39740760 Msa0117830:intron 50.0%
! ATCCGATTTGCCCGTGCTAA+GGG + chr1_3:39740814-39740833 None:intergenic 50.0%
! TATCCGATTTGCCCGTGCTA+AGG + chr1_3:39740815-39740834 None:intergenic 50.0%
!! GGAAGACTTGATGGCCCTTT+TGG + chr1_3:39740842-39740861 None:intergenic 50.0%
GTGGCAGCAAGCACATATGT+CGG + chr1_3:39740872-39740891 None:intergenic 50.0%
TTGTAGCAGCGCAAACGATG+TGG + chr1_3:39740891-39740910 None:intergenic 50.0%
TGCTGCCTTTGTGAATCAGG+AGG + chr1_3:39740919-39740938 None:intergenic 50.0%
GGATGCTGCCTTTGTGAATC+AGG + chr1_3:39740922-39740941 None:intergenic 50.0%
TTCACAAAGGCAGCATCCCT+AGG - chr1_3:39740924-39740943 Msa0117830:intron 50.0%
CCACCATCTTCACTACTCTC+TGG + chr1_3:39741249-39741268 None:intergenic 50.0%
CCAGAGAGTAGTGAAGATGG+TGG - chr1_3:39741246-39741265 Msa0117830:intron 50.0%
AACTGGTGATCCTGATGGTC+AGG - chr1_3:39741281-39741300 Msa0117830:intron 50.0%
GCAAGTTCTTCCTGACCATC+AGG + chr1_3:39741294-39741313 None:intergenic 50.0%
GGTCAGGAAGAACTTGCATC+AGG - chr1_3:39741297-39741316 Msa0117830:intron 50.0%
AACTTACACAACGTCGACCG+AGG + chr1_3:39741486-39741505 None:intergenic 50.0%
CCTTCGGGGACGGTTGTAAA+TGG + chr1_3:39740040-39740059 None:intergenic 55.0%
CCATTTACAACCGTCCCCGA+AGG - chr1_3:39740037-39740056 Msa0117830:intron 55.0%
AGCTCAAATCCCTTCGGGGA+CGG + chr1_3:39740050-39740069 None:intergenic 55.0%
GCAAACGCTCGAGGAAGATG+AGG - chr1_3:39740402-39740421 Msa0117830:intron 55.0%
GGCAGCTTTGCACAGCGAAA+TGG - chr1_3:39740459-39740478 Msa0117830:intron 55.0%
CTCCATGTGGTTGCGTTGAG+AGG - chr1_3:39740740-39740759 Msa0117830:intron 55.0%
CTTTACCCCACCCCTTAGCA+CGG - chr1_3:39740800-39740819 Msa0117830:intron 55.0%
TTTACCCCACCCCTTAGCAC+GGG - chr1_3:39740801-39740820 Msa0117830:intron 55.0%
ATTTGCCCGTGCTAAGGGGT+GGG + chr1_3:39740809-39740828 None:intergenic 55.0%
ACCCCTTAGCACGGGCAAAT+CGG - chr1_3:39740809-39740828 Msa0117830:intron 55.0%
! TCCGATTTGCCCGTGCTAAG+GGG + chr1_3:39740813-39740832 None:intergenic 55.0%
CGTCAGAGCTAGCCACCAAA+TGG + chr1_3:39741128-39741147 None:intergenic 55.0%
GCCCTCTCAACGCAACCACA+TGG + chr1_3:39740745-39740764 None:intergenic 60.0%
TTTGCCCGTGCTAAGGGGTG+GGG + chr1_3:39740808-39740827 None:intergenic 60.0%
GATTTGCCCGTGCTAAGGGG+TGG + chr1_3:39740810-39740829 None:intergenic 60.0%
AACGACTCCAGCACGGTCCT+CGG - chr1_3:39741466-39741485 Msa0117830:CDS 60.0%
ACGTCGACCGAGGACCGTGC+TGG + chr1_3:39741476-39741495 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 39739032 39741716 39739032 ID=Msa0117830;Name=Msa0117830
chr1_3 mRNA 39739032 39741716 39739032 ID=Msa0117830-mRNA-1;Parent=Msa0117830;Name=Msa0117830-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0|1|1|1|5|0|152
chr1_3 exon 39741590 39741716 39741590 ID=Msa0117830-mRNA-1:exon:12212;Parent=Msa0117830-mRNA-1
chr1_3 exon 39741450 39741514 39741450 ID=Msa0117830-mRNA-1:exon:12211;Parent=Msa0117830-mRNA-1
chr1_3 exon 39740251 39740357 39740251 ID=Msa0117830-mRNA-1:exon:12210;Parent=Msa0117830-mRNA-1
chr1_3 exon 39739250 39739271 39739250 ID=Msa0117830-mRNA-1:exon:12209;Parent=Msa0117830-mRNA-1
chr1_3 exon 39739032 39739166 39739032 ID=Msa0117830-mRNA-1:exon:12208;Parent=Msa0117830-mRNA-1
chr1_3 CDS 39741590 39741716 39741590 ID=Msa0117830-mRNA-1:cds;Parent=Msa0117830-mRNA-1
chr1_3 CDS 39741450 39741514 39741450 ID=Msa0117830-mRNA-1:cds;Parent=Msa0117830-mRNA-1
chr1_3 CDS 39740251 39740357 39740251 ID=Msa0117830-mRNA-1:cds;Parent=Msa0117830-mRNA-1
chr1_3 CDS 39739250 39739271 39739250 ID=Msa0117830-mRNA-1:cds;Parent=Msa0117830-mRNA-1
chr1_3 CDS 39739032 39739166 39739032 ID=Msa0117830-mRNA-1:cds;Parent=Msa0117830-mRNA-1
Gene Sequence

>Msa0117830

ATGTTGGCCGAGAATCTTGTGGATGCTAATGCACCAGCAGAGAAAAATTCTGCAGAGCATCAGATGAGTTTTCAATGCAAAGATATAGGCGGAGACATTATCAATGAACCTAAGGAAGCTAATGTTGCAGAGTATAAACCTGATGCACCTGATCATGATGAAGAATATGATGTACAATCTGACGATGTATCGGATGATGATGAGCAAACGCTCGAGGAAGATGAGGCTCTTATAACTAAAGAAGAACGGCAAGAGGAATTGGCAGCTTTGCACAGCGAAATGGATCTTCCAATTGAGGACACGGTCCTCGGTCGACGTTGTGATGACAGTAACGGTGATGTAGCTACACCAACAAATAATCTATCTCAAAATGAGGTTCATCAATCTGAAAATCTCAAAGAGGTTCTCAGTGAGACAGCCAATGAAAATGTTCCATTTGATTTTTCTGACGAAGAG
Protein sequence

>Msa0117830

MLAENLVDANAPAEKNSAEHQMSFQCKDIGGDIINEPKEANVAEYKPDAPDHDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALHSEMDLPIEDTVLGRRCDDSNGDVATPTNNLSQNEVHQSENLKEVLSETANENVPFDFSDEE