Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120650 | GAU37388.1 | 83.072 | 319 | 46 | 2 | 1 | 319 | 1 | 311 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120650 | sp|Q9SR62|RLPH2_ARATH | 62.857 | 315 | 109 | 2 | 4 | 318 | 2 | 308 | 1.43e-149 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120650 | A0A2Z6MXU0 | 83.072 | 319 | 46 | 2 | 1 | 319 | 1 | 311 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072320 | Msa0120650 | 0.815660 | 8.250881e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120650 | MtrunA17_Chr1g0179141 | 78.997 | 319 | 59 | 2 | 1 | 319 | 1 | 311 | 0.0 | 513 |
| Msa0120650 | MtrunA17_Chr1g0179131 | 95.402 | 174 | 7 | 1 | 1 | 174 | 1 | 173 | 2.26e-123 | 351 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120650 | AT3G09970.1 | 62.857 | 315 | 109 | 2 | 4 | 318 | 2 | 308 | 1.45e-150 | 425 |
| Msa0120650 | AT3G09960.1 | 60.383 | 313 | 115 | 3 | 4 | 315 | 3 | 307 | 1.56e-140 | 400 |
| Msa0120650 | AT3G09970.2 | 61.538 | 260 | 92 | 2 | 4 | 263 | 2 | 253 | 3.78e-120 | 346 |
Find 84 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAAATTTCTTGCGAATT+TGG | 0.143154 | 1_3:+45717999 | Msa0120650:CDS |
| CGCAGGGTGGCGGGAGGAGG+TGG | 0.275927 | 1_3:-45715117 | None:intergenic |
| GAGAGAGAAGGGTGGTTTAC+TGG | 0.282278 | 1_3:+45715187 | Msa0120650:CDS |
| ACAGCCATTATCATCTTCTT+AGG | 0.288773 | 1_3:+45714965 | Msa0120650:CDS |
| AATTTCTTGCGAATTTGGTT+TGG | 0.357446 | 1_3:+45718004 | Msa0120650:CDS |
| AACTCCATGTTGAAGGCTTA+AGG | 0.360440 | 1_3:+45718481 | Msa0120650:CDS |
| GGAAGAATAATTGCAGCTAT+TGG | 0.364132 | 1_3:-45718540 | None:intergenic |
| AGAAATTTCTTATGCTCATC+AGG | 0.364876 | 1_3:-45717988 | None:intergenic |
| AGCTTGAACCATAGGACTTC+GGG | 0.368046 | 1_3:-45718282 | None:intergenic |
| CGTCGCAGGGTGGCGGGAGG+AGG | 0.368315 | 1_3:-45715120 | None:intergenic |
| TGTATCACGAATAATCTTCA+TGG | 0.369384 | 1_3:-45718565 | None:intergenic |
| ATTTCTTGCGAATTTGGTTT+GGG | 0.378397 | 1_3:+45718005 | Msa0120650:CDS |
| AAGTTGATTGCTGTCCATGC+TGG | 0.382258 | 1_3:+45718203 | Msa0120650:CDS |
| AGGGTGGCGGGAGGAGGTGG+AGG | 0.385820 | 1_3:-45715114 | None:intergenic |
| TAAGTGGTAGAAAGAATGTA+TGG | 0.406045 | 1_3:+45718306 | Msa0120650:CDS |
| CTCCTCCCGCCACCCTGCGA+CGG | 0.424125 | 1_3:+45715121 | Msa0120650:CDS |
| CTATAAGAAAATCAATTACT+TGG | 0.429125 | 1_3:-45715018 | None:intergenic |
| AGTTCAACCATCATTGTTAG+TGG | 0.435708 | 1_3:+45718447 | Msa0120650:CDS |
| AGCATTGTGAGGAGAGAGAA+GGG | 0.442648 | 1_3:+45715176 | Msa0120650:CDS |
| ATCACCTAAGAAGATGATAA+TGG | 0.445960 | 1_3:-45714969 | None:intergenic |
| AGAAAATTCTGACCCGTCGC+AGG | 0.447690 | 1_3:-45715134 | None:intergenic |
| AGCATACGACCCTTGCTTCA+TGG | 0.447806 | 1_3:-45714856 | None:intergenic |
| GACTAAATTTAATGTTGCTA+AGG | 0.450224 | 1_3:+45715267 | Msa0120650:CDS |
| GAGGTGGAGGAAGGCGGCGA+AGG | 0.455694 | 1_3:-45715101 | None:intergenic |
| CGGGAGGAGGTGGAGGAAGG+CGG | 0.456011 | 1_3:-45715107 | None:intergenic |
| TCTGACCCGTCGCAGGGTGG+CGG | 0.457196 | 1_3:-45715127 | None:intergenic |
| CGAAGTCATGGTTTCCAGCT+AGG | 0.462451 | 1_3:-45715078 | None:intergenic |
| TCCTCCCGCCACCCTGCGAC+GGG | 0.467836 | 1_3:+45715122 | Msa0120650:CDS |
| AAGAAAATCAATTACTTGGC+GGG | 0.469881 | 1_3:-45715014 | None:intergenic |
| CATGCAAAACTCCATGTTGA+AGG | 0.471442 | 1_3:+45718474 | Msa0120650:CDS |
| GCATACGACCCTTGCTTCAT+GGG | 0.476270 | 1_3:-45714855 | None:intergenic |
| GTCTTTATAAACATTGATGA+TGG | 0.479812 | 1_3:+45718167 | Msa0120650:CDS |
| CTGACCCGTCGCAGGGTGGC+GGG | 0.487506 | 1_3:-45715126 | None:intergenic |
| ATTGCATGCAGATTTGGTTA+AGG | 0.487545 | 1_3:+45717960 | Msa0120650:intron |
| TCGAGATACCCGAAGTCCTA+TGG | 0.490954 | 1_3:+45718274 | Msa0120650:CDS |
| CAGTCCTACGGAGTTTCTCA+TGG | 0.499977 | 1_3:+45715334 | Msa0120650:CDS |
| ACTAAATTTAATGTTGCTAA+GGG | 0.501234 | 1_3:+45715268 | Msa0120650:CDS |
| GGAGTTTCTCATGGTTCTGC+CGG | 0.504337 | 1_3:+45715343 | Msa0120650:CDS |
| CCACTTAGAGCTTGAACCAT+AGG | 0.508217 | 1_3:-45718290 | None:intergenic |
| TAAGAAAATCAATTACTTGG+CGG | 0.510428 | 1_3:-45715015 | None:intergenic |
| GAGCTTGAACCATAGGACTT+CGG | 0.510904 | 1_3:-45718283 | None:intergenic |
| AAGCATTGTGAGGAGAGAGA+AGG | 0.511990 | 1_3:+45715175 | Msa0120650:CDS |
| TTAGGTGATTACTGTGACAG+AGG | 0.513807 | 1_3:+45714983 | Msa0120650:CDS |
| TGGCGGGAGGAGGTGGAGGA+AGG | 0.517276 | 1_3:-45715110 | None:intergenic |
| TATGCAGCTTCTACCTGTGT+TGG | 0.521371 | 1_3:+45717573 | Msa0120650:intron |
| CAAGGTTCTGTAAATGATGC+TGG | 0.521943 | 1_3:+45715301 | Msa0120650:CDS |
| AGTTGATTGCTGTCCATGCT+GGG | 0.538411 | 1_3:+45718204 | Msa0120650:CDS |
| GCTTCTACCTGTGTTGGCAA+TGG | 0.542663 | 1_3:+45717579 | Msa0120650:intron |
| TTAAGGTTGATAATTGATGA+AGG | 0.545370 | 1_3:+45718498 | Msa0120650:CDS |
| TTTGGTTTGGGTTCATGAAG+AGG | 0.545936 | 1_3:+45718017 | Msa0120650:CDS |
| GCAAGGGTCGTATGCTGCAT+CGG | 0.547959 | 1_3:+45714863 | Msa0120650:CDS |
| GCTAAGGGTCGTGTGTATCA+AGG | 0.548845 | 1_3:+45715283 | Msa0120650:CDS |
| GTCCATGCTGGGTTGGAGAA+AGG | 0.556867 | 1_3:+45718215 | Msa0120650:CDS |
| TGCCTTTCTCCAACCCAGCA+TGG | 0.558579 | 1_3:-45718217 | None:intergenic |
| AACTCCGTAGGACTGAAAAG+TGG | 0.560340 | 1_3:-45715326 | None:intergenic |
| ACCCGTCGCAGGGTGGCGGG+AGG | 0.572448 | 1_3:-45715123 | None:intergenic |
| TGTCAGAATCCCATGAAGCA+AGG | 0.572451 | 1_3:+45714846 | Msa0120650:CDS |
| AGGCGGCGAAGGCGAAGTCA+TGG | 0.581598 | 1_3:-45715090 | None:intergenic |
| TTGATAATTGATGAAGGTGG+TGG | 0.585017 | 1_3:+45718504 | Msa0120650:CDS |
| TGCTGCATCGGTGACATCCA+CGG | 0.585229 | 1_3:+45714875 | Msa0120650:CDS |
| GATTGCTGTCCATGCTGGGT+TGG | 0.586278 | 1_3:+45718208 | Msa0120650:CDS |
| AGATGCATGTGCAAGGCAGA+AGG | 0.592829 | 1_3:+45715227 | Msa0120650:CDS |
| GAAAATTCTGACCCGTCGCA+GGG | 0.595212 | 1_3:-45715133 | None:intergenic |
| TCAATTACTTGGCGGGTGTG+AGG | 0.598041 | 1_3:-45715007 | None:intergenic |
| AAGTGGTAGAAAGAATGTAT+GGG | 0.600330 | 1_3:+45718307 | Msa0120650:CDS |
| GTCAGAATCCCATGAAGCAA+GGG | 0.600383 | 1_3:+45714847 | Msa0120650:CDS |
| TGCATGTGCAAGGCAGAAGG+TGG | 0.605884 | 1_3:+45715230 | Msa0120650:CDS |
| ACTCCGTAGGACTGAAAAGT+GGG | 0.612295 | 1_3:-45715325 | None:intergenic |
| TCACGAATAATCTTCATGGA+AGG | 0.612634 | 1_3:-45718561 | None:intergenic |
| TATGAGAAGATGCATGTGCA+AGG | 0.618350 | 1_3:+45715220 | Msa0120650:CDS |
| GATGGAGTTTAAGCATTGTG+AGG | 0.619332 | 1_3:+45715165 | Msa0120650:CDS |
| GTGCAAGGCAGAAGGTGGAG+TGG | 0.622956 | 1_3:+45715235 | Msa0120650:CDS |
| CCTATGGTTCAAGCTCTAAG+TGG | 0.624904 | 1_3:+45718290 | Msa0120650:CDS |
| TCAACCTTAAGCCTTCAACA+TGG | 0.637711 | 1_3:-45718485 | None:intergenic |
| ACACATACCATTGCCAACAC+AGG | 0.647877 | 1_3:-45717586 | None:intergenic |
| ATGGTGACCACTAACAATGA+TGG | 0.654637 | 1_3:-45718454 | None:intergenic |
| ATTGTGAGGAGAGAGAAGGG+TGG | 0.669873 | 1_3:+45715179 | Msa0120650:CDS |
| GGGTGGTTTACTGGTGACGA+CGG | 0.681112 | 1_3:+45715196 | Msa0120650:CDS |
| AATTCTGACCCGTCGCAGGG+TGG | 0.692479 | 1_3:-45715130 | None:intergenic |
| GAATGTATGGGATATTCCAG+AGG | 0.693556 | 1_3:+45718319 | Msa0120650:CDS |
| ATGGTCAAATCTCGAAAACA+CGG | 0.705782 | 1_3:+45714922 | Msa0120650:CDS |
| TGAGCTTGTCAATGAAACCG+TGG | 0.713510 | 1_3:-45714892 | None:intergenic |
| AGGTTGATAATTGATGAAGG+TGG | 0.714328 | 1_3:+45718501 | Msa0120650:CDS |
| AGAACCATGAGAAACTCCGT+AGG | 0.725251 | 1_3:-45715338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTGATACATTATTT+GGG | - | chr1_3:45716411-45716430 | None:intergenic | 10.0% |
| !!! | AATAATTTTGATACATTATT+TGG | - | chr1_3:45716412-45716431 | None:intergenic | 10.0% |
| !! | ATTGTTAATTTAATAAACAA+TGG | - | chr1_3:45718110-45718129 | None:intergenic | 10.0% |
| !! | TTATTAAATGATATGTATGT+AGG | + | chr1_3:45716375-45716394 | Msa0120650:intron | 15.0% |
| !!! | TAATTTTGATACATTATTTG+GGG | - | chr1_3:45716410-45716429 | None:intergenic | 15.0% |
| !!! | TAATAAAACTGTTATTTCTT+TGG | - | chr1_3:45716769-45716788 | None:intergenic | 15.0% |
| !! | ATTAAGAAATATGATAGAAT+AGG | + | chr1_3:45716785-45716804 | Msa0120650:intron | 15.0% |
| !!! | ATTTAGATTTTAGATACAAT+TGG | - | chr1_3:45717379-45717398 | None:intergenic | 15.0% |
| !! | TATAATCAAAAGATAGAATA+TGG | - | chr1_3:45717839-45717858 | None:intergenic | 15.0% |
| !! | CTATAAGAAAATCAATTACT+TGG | - | chr1_3:45715021-45715040 | None:intergenic | 20.0% |
| !! | ACTAAATTTAATGTTGCTAA+GGG | + | chr1_3:45715268-45715287 | Msa0120650:CDS | 20.0% |
| !! | TTTAGTTAAGTGATTATGTT+TGG | + | chr1_3:45715669-45715688 | Msa0120650:intron | 20.0% |
| !! | TTAGTTAAGTGATTATGTTT+GGG | + | chr1_3:45715670-45715689 | Msa0120650:intron | 20.0% |
| !! | ACTAAAATAAACATAGCTAA+AGG | - | chr1_3:45715968-45715987 | None:intergenic | 20.0% |
| !!! | ATTACAAAAGAGAGTTTTAA+AGG | + | chr1_3:45716215-45716234 | Msa0120650:intron | 20.0% |
| !!! | TTACAAAAGAGAGTTTTAAA+GGG | + | chr1_3:45716216-45716235 | Msa0120650:intron | 20.0% |
| !! | AATCTAAATAACCAAACAAA+AGG | + | chr1_3:45717390-45717409 | Msa0120650:intron | 20.0% |
| ! | TAAGAAAATCAATTACTTGG+CGG | - | chr1_3:45715018-45715037 | None:intergenic | 25.0% |
| !!! | AGGAAAACATGTTTTTGATT+CGG | - | chr1_3:45715061-45715080 | None:intergenic | 25.0% |
| ! | GACTAAATTTAATGTTGCTA+AGG | + | chr1_3:45715267-45715286 | Msa0120650:CDS | 25.0% |
| ! | TACTTAAGACGATTATATGT+CGG | - | chr1_3:45715379-45715398 | None:intergenic | 25.0% |
| !!! | TTTTTGGCTAGAATTGTTTT+TGG | - | chr1_3:45715761-45715780 | None:intergenic | 25.0% |
| ! | AAAGAAGGAGAATTGATAAA+GGG | - | chr1_3:45715936-45715955 | None:intergenic | 25.0% |
| ! | TAAAGAAGGAGAATTGATAA+AGG | - | chr1_3:45715937-45715956 | None:intergenic | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | - | chr1_3:45715951-45715970 | None:intergenic | 25.0% |
| !!! | TAAACAAACTGATTTGTGTT+TGG | - | chr1_3:45716027-45716046 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr1_3:45716071-45716090 | None:intergenic | 25.0% |
| ! | ACATAAATTTAGTGTGTGTT+TGG | - | chr1_3:45716163-45716182 | None:intergenic | 25.0% |
| !!! | TACAAAAGAGAGTTTTAAAG+GGG | + | chr1_3:45716217-45716236 | Msa0120650:intron | 25.0% |
| !! | AACAAACATGGAGAAAATTT+TGG | + | chr1_3:45716264-45716283 | Msa0120650:intron | 25.0% |
| !!! | TAAGTGTTTTATTTGGTTAG+TGG | - | chr1_3:45716549-45716568 | None:intergenic | 25.0% |
| !!! | GGAAGATTAAGTGTTTTATT+TGG | - | chr1_3:45716556-45716575 | None:intergenic | 25.0% |
| ! | CATACAAAAAATCATTGTGA+GGG | + | chr1_3:45717139-45717158 | Msa0120650:intron | 25.0% |
| ! | ACATATTGCAGATAAATCAA+CGG | - | chr1_3:45717290-45717309 | None:intergenic | 25.0% |
| !!! | AGCTTTAAATTATGTGTGAA+TGG | + | chr1_3:45717613-45717632 | Msa0120650:intron | 25.0% |
| ! | AATCCATATGCATTGTATTT+GGG | - | chr1_3:45717898-45717917 | None:intergenic | 25.0% |
| ! | AAATCCATATGCATTGTATT+TGG | - | chr1_3:45717899-45717918 | None:intergenic | 25.0% |
| ! | GAGTACTAATTTATCTATTG+CGG | - | chr1_3:45717925-45717944 | None:intergenic | 25.0% |
| ! | AGATAAATTAGTACTCTCTA+AGG | + | chr1_3:45717929-45717948 | Msa0120650:intron | 25.0% |
| ! | TAAGAAATTTCTTGCGAATT+TGG | + | chr1_3:45717999-45718018 | Msa0120650:CDS | 25.0% |
| ! | ATATGAGTATAGAAACAAAG+AGG | - | chr1_3:45718061-45718080 | None:intergenic | 25.0% |
| !!! | TAACAATTCTGAAAGCATTT+TGG | + | chr1_3:45718123-45718142 | Msa0120650:intron | 25.0% |
| !! | ATTTTGGATTATGTTTTACC+AGG | + | chr1_3:45718139-45718158 | Msa0120650:intron | 25.0% |
| ! | GTCTTTATAAACATTGATGA+TGG | + | chr1_3:45718167-45718186 | Msa0120650:CDS | 25.0% |
| ! | TTCTTCAAATTCGAATAGAA+TGG | + | chr1_3:45718394-45718413 | Msa0120650:intron | 25.0% |
| !!! | TTAAGGTTGATAATTGATGA+AGG | + | chr1_3:45718498-45718517 | Msa0120650:CDS | 25.0% |
| ATCACCTAAGAAGATGATAA+TGG | - | chr1_3:45714972-45714991 | None:intergenic | 30.0% | |
| AAGAAAATCAATTACTTGGC+GGG | - | chr1_3:45715017-45715036 | None:intergenic | 30.0% | |
| !! | GGAAAACATGTTTTTGATTC+GGG | - | chr1_3:45715060-45715079 | None:intergenic | 30.0% |
| ACTTAAGACGATTATATGTC+GGG | - | chr1_3:45715378-45715397 | None:intergenic | 30.0% | |
| TTTGGGTGGATATATGTATA+AGG | + | chr1_3:45715687-45715706 | Msa0120650:intron | 30.0% | |
| TTGGGTGGATATATGTATAA+GGG | + | chr1_3:45715688-45715707 | Msa0120650:intron | 30.0% | |
| GGGCAATAAAGGAAAATAAT+AGG | - | chr1_3:45715916-45715935 | None:intergenic | 30.0% | |
| GAATTGATAAAGGGCAATAA+AGG | - | chr1_3:45715927-45715946 | None:intergenic | 30.0% | |
| ! | AACATGGAGAAAATTTTGGA+TGG | + | chr1_3:45716268-45716287 | Msa0120650:intron | 30.0% |
| TATACAATGAGAAGCAATCT+TGG | - | chr1_3:45716460-45716479 | None:intergenic | 30.0% | |
| ACGACTACAATCTCAATATT+AGG | + | chr1_3:45716522-45716541 | Msa0120650:intron | 30.0% | |
| CTTCCTTACTTTAGTGAAAA+TGG | + | chr1_3:45716571-45716590 | Msa0120650:intron | 30.0% | |
| !! | AAGCCATTTTCACTAAAGTA+AGG | - | chr1_3:45716577-45716596 | None:intergenic | 30.0% |
| TTAGTGAAAATGGCTTCTAA+TGG | + | chr1_3:45716581-45716600 | Msa0120650:intron | 30.0% | |
| ATTCCATAAGACAATTGTGT+CGG | - | chr1_3:45716694-45716713 | None:intergenic | 30.0% | |
| ACACAATTGTCTTATGGAAT+AGG | + | chr1_3:45716694-45716713 | Msa0120650:intron | 30.0% | |
| ! | TGAATAGAGTATTCTCTCTT+AGG | - | chr1_3:45716840-45716859 | None:intergenic | 30.0% |
| AAAAACTGCTCAAGAACTTA+AGG | + | chr1_3:45716859-45716878 | Msa0120650:intron | 30.0% | |
| AAAACTGCTCAAGAACTTAA+GGG | + | chr1_3:45716860-45716879 | Msa0120650:intron | 30.0% | |
| !! | GACTAGGTTGATTAATTCTA+GGG | - | chr1_3:45716980-45716999 | None:intergenic | 30.0% |
| !! | AGACTAGGTTGATTAATTCT+AGG | - | chr1_3:45716981-45717000 | None:intergenic | 30.0% |
| !!! | CACAATGATTTTTTGTATGC+AGG | - | chr1_3:45717138-45717157 | None:intergenic | 30.0% |
| GCATACAAAAAATCATTGTG+AGG | + | chr1_3:45717138-45717157 | Msa0120650:intron | 30.0% | |
| AAAAAATCATTGTGAGGGTT+AGG | + | chr1_3:45717144-45717163 | Msa0120650:intron | 30.0% | |
| AAAAATCATTGTGAGGGTTA+GGG | + | chr1_3:45717145-45717164 | Msa0120650:intron | 30.0% | |
| CGGAAGAGTAAAATAAATCT+TGG | - | chr1_3:45717270-45717289 | None:intergenic | 30.0% | |
| !! | ATAACCAAACAAAAGGTGTT+AGG | + | chr1_3:45717397-45717416 | Msa0120650:intron | 30.0% |
| TTAGATGACAGATAACCATA+GGG | - | chr1_3:45717467-45717486 | None:intergenic | 30.0% | |
| ATTAGATGACAGATAACCAT+AGG | - | chr1_3:45717468-45717487 | None:intergenic | 30.0% | |
| CATCTAATTTCACTATGTAC+TGG | + | chr1_3:45717480-45717499 | Msa0120650:intron | 30.0% | |
| GAATGGCATAGTTGAATTAT+AGG | + | chr1_3:45717630-45717649 | Msa0120650:intron | 30.0% | |
| TACGAACTCTCAAACATTTA+CGG | - | chr1_3:45717714-45717733 | None:intergenic | 30.0% | |
| ! | CTGTTTTCGTAAGTTATCAT+AGG | - | chr1_3:45717790-45717809 | None:intergenic | 30.0% |
| ! | TGCATTGTATTTGGGTTAAT+GGG | - | chr1_3:45717890-45717909 | None:intergenic | 30.0% |
| ! | ATGCATTGTATTTGGGTTAA+TGG | - | chr1_3:45717891-45717910 | None:intergenic | 30.0% |
| TAACCCAAATACAATGCATA+TGG | + | chr1_3:45717892-45717911 | Msa0120650:intron | 30.0% | |
| AGAAATTTCTTATGCTCATC+AGG | - | chr1_3:45717991-45718010 | None:intergenic | 30.0% | |
| AATTTCTTGCGAATTTGGTT+TGG | + | chr1_3:45718004-45718023 | Msa0120650:CDS | 30.0% | |
| ! | ATTTCTTGCGAATTTGGTTT+GGG | + | chr1_3:45718005-45718024 | Msa0120650:CDS | 30.0% |
| TGTTTATAAAGACATCATCC+TGG | - | chr1_3:45718160-45718179 | None:intergenic | 30.0% | |
| TAAGTGGTAGAAAGAATGTA+TGG | + | chr1_3:45718306-45718325 | Msa0120650:CDS | 30.0% | |
| AAGTGGTAGAAAGAATGTAT+GGG | + | chr1_3:45718307-45718326 | Msa0120650:CDS | 30.0% | |
| ! | ATGGCTAATTGTTTTCTTGT+AGG | + | chr1_3:45718413-45718432 | Msa0120650:intron | 30.0% |
| TGTATCACGAATAATCTTCA+TGG | - | chr1_3:45718568-45718587 | None:intergenic | 30.0% | |
| TTGACAAGCTCAAAAACCTA+TGG | + | chr1_3:45714903-45714922 | Msa0120650:CDS | 35.0% | |
| !! | TGTTTTCGAGATTTGACCAT+AGG | - | chr1_3:45714922-45714941 | None:intergenic | 35.0% |
| ATGGTCAAATCTCGAAAACA+CGG | + | chr1_3:45714922-45714941 | Msa0120650:CDS | 35.0% | |
| !! | ATGGCTGTTTTGAATTGTGA+TGG | - | chr1_3:45714953-45714972 | None:intergenic | 35.0% |
| ACAGCCATTATCATCTTCTT+AGG | + | chr1_3:45714965-45714984 | Msa0120650:CDS | 35.0% | |
| !!! | ATGTTTTTGATTCGGGTAAC+GGG | - | chr1_3:45715053-45715072 | None:intergenic | 35.0% |
| !!! | CATGTTTTTGATTCGGGTAA+CGG | - | chr1_3:45715054-45715073 | None:intergenic | 35.0% |
| ! | CAAAAACATGTTTTCCTAGC+TGG | + | chr1_3:45715064-45715083 | Msa0120650:CDS | 35.0% |
| ! | CTAGTGCGTGTTTTATATCA+CGG | - | chr1_3:45715558-45715577 | None:intergenic | 35.0% |
| GTTAAGTGATTATGTTTGGG+TGG | + | chr1_3:45715673-45715692 | Msa0120650:intron | 35.0% | |
| TATATGTATAAGGGCCTGTT+TGG | + | chr1_3:45715697-45715716 | Msa0120650:intron | 35.0% | |
| !! | CAAACCAAACACGTTGTTTT+TGG | - | chr1_3:45715777-45715796 | None:intergenic | 35.0% |
| CAAAAACAACGTGTTTGGTT+TGG | + | chr1_3:45715775-45715794 | Msa0120650:intron | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | chr1_3:45715854-45715873 | None:intergenic | 35.0% |
| !!! | AAGAGAGTTTTAAAGGGGAA+TGG | + | chr1_3:45716222-45716241 | Msa0120650:intron | 35.0% |
| CTTTCCTCTCAAAACAAACA+TGG | + | chr1_3:45716252-45716271 | Msa0120650:intron | 35.0% | |
| !!! | TTCTCCATGTTTGTTTTGAG+AGG | - | chr1_3:45716259-45716278 | None:intergenic | 35.0% |
| ATGAGAAGCAATCTTGGTTA+GGG | - | chr1_3:45716454-45716473 | None:intergenic | 35.0% | |
| AATGAGAAGCAATCTTGGTT+AGG | - | chr1_3:45716455-45716474 | None:intergenic | 35.0% | |
| TCCAAAACTTCACAAAAGTC+TGG | + | chr1_3:45716485-45716504 | Msa0120650:intron | 35.0% | |
| ! | ACCAGACTTTTGTGAAGTTT+TGG | - | chr1_3:45716489-45716508 | None:intergenic | 35.0% |
| GTGTCTCATATGGTCTAAAT+AGG | - | chr1_3:45716664-45716683 | None:intergenic | 35.0% | |
| !! | CGGTATAAAAGTGTCTCATA+TGG | - | chr1_3:45716674-45716693 | None:intergenic | 35.0% |
| ATACCGACACAATTGTCTTA+TGG | + | chr1_3:45716688-45716707 | Msa0120650:intron | 35.0% | |
| AAATTCTACTAGTGCAGCTT+TGG | - | chr1_3:45716742-45716761 | None:intergenic | 35.0% | |
| ! | TAGAGTATTCTCTCTTAGGA+AGG | - | chr1_3:45716836-45716855 | None:intergenic | 35.0% |
| GTTACTTAGAAATGAAGAGG+CGG | - | chr1_3:45717116-45717135 | None:intergenic | 35.0% | |
| CAGGTTACTTAGAAATGAAG+AGG | - | chr1_3:45717119-45717138 | None:intergenic | 35.0% | |
| ATGGATGCTTGATTCATTCA+CGG | + | chr1_3:45717218-45717237 | Msa0120650:intron | 35.0% | |
| ATGCATAAGAAGCCAAACAA+AGG | + | chr1_3:45717311-45717330 | Msa0120650:intron | 35.0% | |
| TAAGAAGCCAAACAAAGGAT+TGG | + | chr1_3:45717316-45717335 | Msa0120650:intron | 35.0% | |
| AACGAATCCAATCCTTTGTT+TGG | - | chr1_3:45717326-45717345 | None:intergenic | 35.0% | |
| TAGATGACAGATAACCATAG+GGG | - | chr1_3:45717466-45717485 | None:intergenic | 35.0% | |
| CAATTCATTGCATGCAGATT+TGG | + | chr1_3:45717954-45717973 | Msa0120650:intron | 35.0% | |
| ! | ATTGCATGCAGATTTGGTTA+AGG | + | chr1_3:45717960-45717979 | Msa0120650:intron | 35.0% |
| AGTTCAACCATCATTGTTAG+TGG | + | chr1_3:45718447-45718466 | Msa0120650:CDS | 35.0% | |
| !! | AGGTTGATAATTGATGAAGG+TGG | + | chr1_3:45718501-45718520 | Msa0120650:CDS | 35.0% |
| ! | TTGATAATTGATGAAGGTGG+TGG | + | chr1_3:45718504-45718523 | Msa0120650:CDS | 35.0% |
| GGAAGAATAATTGCAGCTAT+TGG | - | chr1_3:45718543-45718562 | None:intergenic | 35.0% | |
| TCACGAATAATCTTCATGGA+AGG | - | chr1_3:45718564-45718583 | None:intergenic | 35.0% | |
| TTAGGTGATTACTGTGACAG+AGG | + | chr1_3:45714983-45715002 | Msa0120650:CDS | 40.0% | |
| ! | GATGGAGTTTAAGCATTGTG+AGG | + | chr1_3:45715165-45715184 | Msa0120650:CDS | 40.0% |
| TATGAGAAGATGCATGTGCA+AGG | + | chr1_3:45715220-45715239 | Msa0120650:CDS | 40.0% | |
| CAAGGTTCTGTAAATGATGC+TGG | + | chr1_3:45715301-45715320 | Msa0120650:CDS | 40.0% | |
| ATATGTCGGGACATACTTAC+CGG | - | chr1_3:45715365-45715384 | None:intergenic | 40.0% | |
| AACACAAACTAGTGCGTGTT+TGG | - | chr1_3:45715621-45715640 | None:intergenic | 40.0% | |
| !! | GTAGAGAATTGCTTTTGGCT+GGG | - | chr1_3:45715734-45715753 | None:intergenic | 40.0% |
| !! | TGTAGAGAATTGCTTTTGGC+TGG | - | chr1_3:45715735-45715754 | None:intergenic | 40.0% |
| ! | GCACTGTAGAGAATTGCTTT+TGG | - | chr1_3:45715739-45715758 | None:intergenic | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | + | chr1_3:45715770-45715789 | Msa0120650:intron | 40.0% | |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | chr1_3:45715821-45715840 | None:intergenic | 40.0% |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | chr1_3:45715824-45715843 | None:intergenic | 40.0% |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr1_3:45715838-45715857 | None:intergenic | 40.0% | |
| !!! | AGAGTTTTAAAGGGGAATGG+AGG | + | chr1_3:45716225-45716244 | Msa0120650:intron | 40.0% |
| TTTGGATGGTCACAACGATT+TGG | + | chr1_3:45716282-45716301 | Msa0120650:intron | 40.0% | |
| ! | CAGCTTTGGCAAGACTAAAA+AGG | - | chr1_3:45716728-45716747 | None:intergenic | 40.0% |
| TAGGAGAAAATCTCTCCTCA+AGG | + | chr1_3:45716804-45716823 | Msa0120650:intron | 40.0% | |
| AGGAGAAAATCTCTCCTCAA+GGG | + | chr1_3:45716805-45716824 | Msa0120650:intron | 40.0% | |
| TTGACCTTAGCTCAAACTCA+CGG | - | chr1_3:45717016-45717035 | None:intergenic | 40.0% | |
| ! | TTGCTCTTGTAGTCCTTTTG+TGG | - | chr1_3:45717065-45717084 | None:intergenic | 40.0% |
| CAAAAGGACTACAAGAGCAA+AGG | + | chr1_3:45717065-45717084 | Msa0120650:intron | 40.0% | |
| ! | TCATTCACGGTTTTGCAATG+AGG | + | chr1_3:45717231-45717250 | Msa0120650:intron | 40.0% |
| ! | CATTCACGGTTTTGCAATGA+GGG | + | chr1_3:45717232-45717251 | Msa0120650:intron | 40.0% |
| ! | GTTTTGCAATGAGGGCAATA+AGG | + | chr1_3:45717240-45717259 | Msa0120650:intron | 40.0% |
| ACAAAGGATTGGATTCGTTC+TGG | + | chr1_3:45717327-45717346 | Msa0120650:intron | 40.0% | |
| ! | AGTGCCTAACACCTTTTGTT+TGG | - | chr1_3:45717404-45717423 | None:intergenic | 40.0% |
| TGTGCAAAGACTCAAGTTCA+CGG | + | chr1_3:45717435-45717454 | Msa0120650:intron | 40.0% | |
| !! | TTTGGTTTGGGTTCATGAAG+AGG | + | chr1_3:45718017-45718036 | Msa0120650:CDS | 40.0% |
| GAATGTATGGGATATTCCAG+AGG | + | chr1_3:45718319-45718338 | Msa0120650:CDS | 40.0% | |
| ATGGTGACCACTAACAATGA+TGG | - | chr1_3:45718457-45718476 | None:intergenic | 40.0% | |
| ! | CTTCAACATGGAGTTTTGCA+TGG | - | chr1_3:45718476-45718495 | None:intergenic | 40.0% |
| CATGCAAAACTCCATGTTGA+AGG | + | chr1_3:45718474-45718493 | Msa0120650:CDS | 40.0% | |
| AACTCCATGTTGAAGGCTTA+AGG | + | chr1_3:45718481-45718500 | Msa0120650:CDS | 40.0% | |
| TCAACCTTAAGCCTTCAACA+TGG | - | chr1_3:45718488-45718507 | None:intergenic | 40.0% | |
| TGTCAGAATCCCATGAAGCA+AGG | + | chr1_3:45714846-45714865 | Msa0120650:CDS | 45.0% | |
| GTCAGAATCCCATGAAGCAA+GGG | + | chr1_3:45714847-45714866 | Msa0120650:CDS | 45.0% | |
| TGAGCTTGTCAATGAAACCG+TGG | - | chr1_3:45714895-45714914 | None:intergenic | 45.0% | |
| !!! | TTTTGATTCGGGTAACGGGT+TGG | - | chr1_3:45715049-45715068 | None:intergenic | 45.0% |
| ! | GACGGGTCAGAATTTTCTGA+GGG | + | chr1_3:45715139-45715158 | Msa0120650:CDS | 45.0% |
| ! | ACGGGTCAGAATTTTCTGAG+GGG | + | chr1_3:45715140-45715159 | Msa0120650:CDS | 45.0% |
| !! | AGAATTTTCTGAGGGGTGGA+TGG | + | chr1_3:45715147-45715166 | Msa0120650:CDS | 45.0% |
| ! | AAGCATTGTGAGGAGAGAGA+AGG | + | chr1_3:45715175-45715194 | Msa0120650:CDS | 45.0% |
| AGCATTGTGAGGAGAGAGAA+GGG | + | chr1_3:45715176-45715195 | Msa0120650:CDS | 45.0% | |
| ACTCCGTAGGACTGAAAAGT+GGG | - | chr1_3:45715328-45715347 | None:intergenic | 45.0% | |
| AACTCCGTAGGACTGAAAAG+TGG | - | chr1_3:45715329-45715348 | None:intergenic | 45.0% | |
| AGAACCATGAGAAACTCCGT+AGG | - | chr1_3:45715341-45715360 | None:intergenic | 45.0% | |
| TTAGGAAGGAGTAACCCTTG+AGG | - | chr1_3:45716822-45716841 | None:intergenic | 45.0% | |
| CTTATCCCCGAAATATCCTC+CGG | + | chr1_3:45716891-45716910 | Msa0120650:intron | 45.0% | |
| TTATCCCCGAAATATCCTCC+GGG | + | chr1_3:45716892-45716911 | Msa0120650:intron | 45.0% | |
| AAGTCTCCCGGAGGATATTT+CGG | - | chr1_3:45716901-45716920 | None:intergenic | 45.0% | |
| AGCTCAAACTCACGGATACA+TGG | - | chr1_3:45717008-45717027 | None:intergenic | 45.0% | |
| GTATCCGTGAGTTTGAGCTA+AGG | + | chr1_3:45717009-45717028 | Msa0120650:intron | 45.0% | |
| !! | TCCTTTTGTGGCTGAGTTGA+GGG | - | chr1_3:45717053-45717072 | None:intergenic | 45.0% |
| AGAGATTGCCCTCAGGAAAA+GGG | - | chr1_3:45717192-45717211 | None:intergenic | 45.0% | |
| !!! | TGTTTTGAGAGATTGCCCTC+AGG | - | chr1_3:45717199-45717218 | None:intergenic | 45.0% |
| GAGGGCAATCTCTCAAAACA+TGG | + | chr1_3:45717199-45717218 | Msa0120650:intron | 45.0% | |
| TATGCAGCTTCTACCTGTGT+TGG | + | chr1_3:45717573-45717592 | Msa0120650:intron | 45.0% | |
| ACACATACCATTGCCAACAC+AGG | - | chr1_3:45717589-45717608 | None:intergenic | 45.0% | |
| ! | AAGTTGATTGCTGTCCATGC+TGG | + | chr1_3:45718203-45718222 | Msa0120650:CDS | 45.0% |
| AGTTGATTGCTGTCCATGCT+GGG | + | chr1_3:45718204-45718223 | Msa0120650:CDS | 45.0% | |
| AGCTTGAACCATAGGACTTC+GGG | - | chr1_3:45718285-45718304 | None:intergenic | 45.0% | |
| GAGCTTGAACCATAGGACTT+CGG | - | chr1_3:45718286-45718305 | None:intergenic | 45.0% | |
| CCACTTAGAGCTTGAACCAT+AGG | - | chr1_3:45718293-45718312 | None:intergenic | 45.0% | |
| !! | CCTATGGTTCAAGCTCTAAG+TGG | + | chr1_3:45718290-45718309 | Msa0120650:CDS | 45.0% |
| AAGAAGCAAGCTATCACCTC+TGG | - | chr1_3:45718338-45718357 | None:intergenic | 45.0% | |
| !!! | AATAAAATTTTTAAAAAGTA+AGG | - | chr1_3:45715445-45715464 | None:intergenic | 5.0% |
| GCATACGACCCTTGCTTCAT+GGG | - | chr1_3:45714858-45714877 | None:intergenic | 50.0% | |
| AGCATACGACCCTTGCTTCA+TGG | - | chr1_3:45714859-45714878 | None:intergenic | 50.0% | |
| ! | TCAATTACTTGGCGGGTGTG+AGG | - | chr1_3:45715010-45715029 | None:intergenic | 50.0% |
| CGAAGTCATGGTTTCCAGCT+AGG | - | chr1_3:45715081-45715100 | None:intergenic | 50.0% | |
| GAAAATTCTGACCCGTCGCA+GGG | - | chr1_3:45715136-45715155 | None:intergenic | 50.0% | |
| AGAAAATTCTGACCCGTCGC+AGG | - | chr1_3:45715137-45715156 | None:intergenic | 50.0% | |
| ! | CGACGGGTCAGAATTTTCTG+AGG | + | chr1_3:45715138-45715157 | Msa0120650:CDS | 50.0% |
| !! | GGTCAGAATTTTCTGAGGGG+TGG | + | chr1_3:45715143-45715162 | Msa0120650:CDS | 50.0% |
| ATTGTGAGGAGAGAGAAGGG+TGG | + | chr1_3:45715179-45715198 | Msa0120650:CDS | 50.0% | |
| GAGAGAGAAGGGTGGTTTAC+TGG | + | chr1_3:45715187-45715206 | Msa0120650:CDS | 50.0% | |
| AGATGCATGTGCAAGGCAGA+AGG | + | chr1_3:45715227-45715246 | Msa0120650:CDS | 50.0% | |
| GCTAAGGGTCGTGTGTATCA+AGG | + | chr1_3:45715283-45715302 | Msa0120650:CDS | 50.0% | |
| !! | GGTCCCACTTTTCAGTCCTA+CGG | + | chr1_3:45715322-45715341 | Msa0120650:CDS | 50.0% |
| CAGTCCTACGGAGTTTCTCA+TGG | + | chr1_3:45715334-45715353 | Msa0120650:CDS | 50.0% | |
| ! | GGAGTTTCTCATGGTTCTGC+CGG | + | chr1_3:45715343-45715362 | Msa0120650:CDS | 50.0% |
| AGTCTCCCGGAGGATATTTC+GGG | - | chr1_3:45716900-45716919 | None:intergenic | 50.0% | |
| CGGATACATGGCAGTAGACT+AGG | - | chr1_3:45716996-45717015 | None:intergenic | 50.0% | |
| !!! | GAGTTGAGGGGAGTTTTGGA+AGG | - | chr1_3:45717040-45717059 | None:intergenic | 50.0% |
| !! | CCTTTTGTGGCTGAGTTGAG+GGG | - | chr1_3:45717052-45717071 | None:intergenic | 50.0% |
| ! | GTCCTTTTGTGGCTGAGTTG+AGG | - | chr1_3:45717054-45717073 | None:intergenic | 50.0% |
| GAGAGATTGCCCTCAGGAAA+AGG | - | chr1_3:45717193-45717212 | None:intergenic | 50.0% | |
| AGTTCACGGTATAGCCCCTA+TGG | + | chr1_3:45717449-45717468 | Msa0120650:intron | 50.0% | |
| ! | GCTTCTACCTGTGTTGGCAA+TGG | + | chr1_3:45717579-45717598 | Msa0120650:intron | 50.0% |
| ! | GGTTTGGGTTCATGAAGAGG+TGG | + | chr1_3:45718020-45718039 | Msa0120650:intron | 50.0% |
| TCGAGATACCCGAAGTCCTA+TGG | + | chr1_3:45718274-45718293 | Msa0120650:CDS | 50.0% | |
| GCAAGGGTCGTATGCTGCAT+CGG | + | chr1_3:45714863-45714882 | Msa0120650:CDS | 55.0% | |
| ! | TGCTGCATCGGTGACATCCA+CGG | + | chr1_3:45714875-45714894 | Msa0120650:CDS | 55.0% |
| ! | GGGTGGTTTACTGGTGACGA+CGG | + | chr1_3:45715196-45715215 | Msa0120650:CDS | 55.0% |
| TGCATGTGCAAGGCAGAAGG+TGG | + | chr1_3:45715230-45715249 | Msa0120650:CDS | 55.0% | |
| GGGCAGAAGCTGAACCAAAC+AGG | - | chr1_3:45715714-45715733 | None:intergenic | 55.0% | |
| GTCTCCCGGAGGATATTTCG+GGG | - | chr1_3:45716899-45716918 | None:intergenic | 55.0% | |
| GCACACAGGAGAAAGTCTCC+CGG | - | chr1_3:45716913-45716932 | None:intergenic | 55.0% | |
| !! | GGCTGAGTTGAGGGGAGTTT+TGG | - | chr1_3:45717044-45717063 | None:intergenic | 55.0% |
| CCCCTCAACTCAGCCACAAA+AGG | + | chr1_3:45717049-45717068 | Msa0120650:intron | 55.0% | |
| ! | GCCACACACCCTTTTCCTGA+GGG | + | chr1_3:45717181-45717200 | Msa0120650:intron | 55.0% |
| GATTGCTGTCCATGCTGGGT+TGG | + | chr1_3:45718208-45718227 | Msa0120650:CDS | 55.0% | |
| ! | GTCCATGCTGGGTTGGAGAA+AGG | + | chr1_3:45718215-45718234 | Msa0120650:CDS | 55.0% |
| TGCCTTTCTCCAACCCAGCA+TGG | - | chr1_3:45718220-45718239 | None:intergenic | 55.0% | |
| AATTCTGACCCGTCGCAGGG+TGG | - | chr1_3:45715133-45715152 | None:intergenic | 60.0% | |
| GTGCAAGGCAGAAGGTGGAG+TGG | + | chr1_3:45715235-45715254 | Msa0120650:CDS | 60.0% | |
| CACAGGAGAAAGTCTCCCGG+AGG | - | chr1_3:45716910-45716929 | None:intergenic | 60.0% | |
| GCGCGGATCGCGGCATATAT+AGG | + | chr1_3:45716941-45716960 | Msa0120650:intron | 60.0% | |
| GGGTTAGGGTGAACAAGCCG+CGG | + | chr1_3:45717159-45717178 | Msa0120650:intron | 60.0% | |
| ! | AGGAAAAGGGTGTGTGGCCG+CGG | - | chr1_3:45717179-45717198 | None:intergenic | 60.0% |
| ! | GGCCACACACCCTTTTCCTG+AGG | + | chr1_3:45717180-45717199 | Msa0120650:intron | 60.0% |
| ! | GCCCTCAGGAAAAGGGTGTG+TGG | - | chr1_3:45717185-45717204 | None:intergenic | 60.0% |
| AGGCGGCGAAGGCGAAGTCA+TGG | - | chr1_3:45715093-45715112 | None:intergenic | 65.0% | |
| ATATGCCGCGATCCGCGCGA+GGG | - | chr1_3:45716939-45716958 | None:intergenic | 65.0% | |
| TATATGCCGCGATCCGCGCG+AGG | - | chr1_3:45716940-45716959 | None:intergenic | 65.0% | |
| GAGGTGGAGGAAGGCGGCGA+AGG | - | chr1_3:45715104-45715123 | None:intergenic | 70.0% | |
| CGGGAGGAGGTGGAGGAAGG+CGG | - | chr1_3:45715110-45715129 | None:intergenic | 70.0% | |
| TGGCGGGAGGAGGTGGAGGA+AGG | - | chr1_3:45715113-45715132 | None:intergenic | 70.0% | |
| TCTGACCCGTCGCAGGGTGG+CGG | - | chr1_3:45715130-45715149 | None:intergenic | 70.0% | |
| !! | AGGGTGGCGGGAGGAGGTGG+AGG | - | chr1_3:45715117-45715136 | None:intergenic | 75.0% |
| CTCCTCCCGCCACCCTGCGA+CGG | + | chr1_3:45715121-45715140 | Msa0120650:CDS | 75.0% | |
| TCCTCCCGCCACCCTGCGAC+GGG | + | chr1_3:45715122-45715141 | Msa0120650:CDS | 75.0% | |
| CTGACCCGTCGCAGGGTGGC+GGG | - | chr1_3:45715129-45715148 | None:intergenic | 75.0% | |
| CCTGTGTGCCCACCCTCGCG+CGG | + | chr1_3:45716924-45716943 | Msa0120650:intron | 75.0% | |
| !!! | CGCAGGGTGGCGGGAGGAGG+TGG | - | chr1_3:45715120-45715139 | None:intergenic | 80.0% |
| !!! | CGTCGCAGGGTGGCGGGAGG+AGG | - | chr1_3:45715123-45715142 | None:intergenic | 80.0% |
| !!! | ACCCGTCGCAGGGTGGCGGG+AGG | - | chr1_3:45715126-45715145 | None:intergenic | 80.0% |
| ! | CCGCGCGAGGGTGGGCACAC+AGG | - | chr1_3:45716927-45716946 | None:intergenic | 80.0% |
| ! | GCCCACCCTCGCGCGGATCG+CGG | + | chr1_3:45716931-45716950 | Msa0120650:intron | 80.0% |
| ! | GCCGCGATCCGCGCGAGGGT+GGG | - | chr1_3:45716935-45716954 | None:intergenic | 80.0% |
| ! | TGCCGCGATCCGCGCGAGGG+TGG | - | chr1_3:45716936-45716955 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 45714845 | 45718605 | 45714845 | ID=Msa0120650;Name=Msa0120650 |
| chr1_3 | mRNA | 45714845 | 45718605 | 45714845 | ID=Msa0120650-mRNA-1;Parent=Msa0120650;Name=Msa0120650-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|0.8|1|1|5|0|319 |
| chr1_3 | exon | 45714845 | 45715364 | 45714845 | ID=Msa0120650-mRNA-1:exon:13701;Parent=Msa0120650-mRNA-1 |
| chr1_3 | exon | 45717580 | 45717600 | 45717580 | ID=Msa0120650-mRNA-1:exon:13702;Parent=Msa0120650-mRNA-1 |
| chr1_3 | exon | 45717971 | 45718038 | 45717971 | ID=Msa0120650-mRNA-1:exon:13703;Parent=Msa0120650-mRNA-1 |
| chr1_3 | exon | 45718161 | 45718340 | 45718161 | ID=Msa0120650-mRNA-1:exon:13704;Parent=Msa0120650-mRNA-1 |
| chr1_3 | exon | 45718435 | 45718605 | 45718435 | ID=Msa0120650-mRNA-1:exon:13705;Parent=Msa0120650-mRNA-1 |
| chr1_3 | CDS | 45714845 | 45715364 | 45714845 | ID=Msa0120650-mRNA-1:cds;Parent=Msa0120650-mRNA-1 |
| chr1_3 | CDS | 45717580 | 45717600 | 45717580 | ID=Msa0120650-mRNA-1:cds;Parent=Msa0120650-mRNA-1 |
| chr1_3 | CDS | 45717971 | 45718038 | 45717971 | ID=Msa0120650-mRNA-1:cds;Parent=Msa0120650-mRNA-1 |
| chr1_3 | CDS | 45718161 | 45718340 | 45718161 | ID=Msa0120650-mRNA-1:cds;Parent=Msa0120650-mRNA-1 |
| chr1_3 | CDS | 45718435 | 45718605 | 45718435 | ID=Msa0120650-mRNA-1:cds;Parent=Msa0120650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
