AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072320 MtrunA17_Chr1g0179141 73.043 345 59 1 1 345 1 311 0.0 507
Msa0072320 MtrunA17_Chr1g0179131 97.110 173 5 0 1 173 1 173 8.00e-127 361
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072320 AT3G09970.1 58.065 341 109 1 4 344 2 308 9.10e-148 419
Msa0072320 AT3G09960.1 55.752 339 115 2 4 341 3 307 1.46e-137 393
Msa0072320 AT3G09970.2 55.944 286 92 1 4 289 2 253 2.36e-117 340

Find 89 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAAATTTCTTGCGAATT+TGG 0.143154 1_2:+45098889 Msa0072320:CDS
CGCAGGGTGGCGGGAGGAGG+TGG 0.275927 1_2:-45096483 None:intergenic
GAGAGAGAAGGGTGGTTTAC+TGG 0.282278 1_2:+45096553 Msa0072320:CDS
CAATTCATTGCATGCAGATT+TGG 0.299945 1_2:+45098844 Msa0072320:CDS
ACAGCCACTATCATCTTCTT+AGG 0.333203 1_2:+45096331 Msa0072320:CDS
AATTTCTTGCGAATTTGGTT+TGG 0.357446 1_2:+45098894 Msa0072320:CDS
AACTCCATGTTGAAGGCTTA+AGG 0.360440 1_2:+45099371 Msa0072320:CDS
GGAAGAATAATTGCAGCTAT+TGG 0.364132 1_2:-45099430 None:intergenic
AGAAATTTCTTATGCTCATC+AGG 0.364876 1_2:-45098878 None:intergenic
AGATAAATTAGTACTCTCTA+AGG 0.365007 1_2:+45098819 Msa0072320:intron
AGCTTGAACCATAGGACTTC+GGG 0.368046 1_2:-45099172 None:intergenic
CGTCGCAGGGTGGCGGGAGG+AGG 0.368315 1_2:-45096486 None:intergenic
TGTATCACGAATAATCTTCA+TGG 0.369384 1_2:-45099455 None:intergenic
ATTTCTTGCGAATTTGGTTT+GGG 0.378397 1_2:+45098895 Msa0072320:CDS
AAGTTGATTGCTGTCCATGC+TGG 0.382258 1_2:+45099093 Msa0072320:CDS
AGGGTGGCGGGAGGAGGTGG+AGG 0.385820 1_2:-45096480 None:intergenic
TAAGTGGTAGAAAGAATGTA+TGG 0.406045 1_2:+45099196 Msa0072320:CDS
CTCCTCCCGCCACCCTGCGA+CGG 0.424125 1_2:+45096487 Msa0072320:CDS
CTATAAGAAAATCAATTACT+TGG 0.429125 1_2:-45096384 None:intergenic
AGTTCAACCATCATTGTTAG+TGG 0.435708 1_2:+45099337 Msa0072320:CDS
AGCATTGTGAGGAGAGAGAA+GGG 0.442648 1_2:+45096542 Msa0072320:CDS
AGAAAATTCTGACCCGTCGC+AGG 0.447690 1_2:-45096500 None:intergenic
AGCATACGACCCTTGCTTCA+TGG 0.447806 1_2:-45096222 None:intergenic
GACTAAATTTAATGTTGCTA+AGG 0.450224 1_2:+45096630 Msa0072320:CDS
GAGGTGGAGGAAGGCGGCGA+AGG 0.455694 1_2:-45096467 None:intergenic
CGGGAGGAGGTGGAGGAAGG+CGG 0.456011 1_2:-45096473 None:intergenic
TCTGACCCGTCGCAGGGTGG+CGG 0.457196 1_2:-45096493 None:intergenic
CGAAGTCATGGTTTCCAGCT+AGG 0.462451 1_2:-45096444 None:intergenic
TCCTCCCGCCACCCTGCGAC+GGG 0.467836 1_2:+45096488 Msa0072320:CDS
ATATGTCGGGACATACTTAC+CGG 0.469552 1_2:-45096725 None:intergenic
AAGAAAATCAATTACTTGGC+GGG 0.469881 1_2:-45096380 None:intergenic
CATGCAAAACTCCATGTTGA+AGG 0.471442 1_2:+45099364 Msa0072320:CDS
GCATACGACCCTTGCTTCAT+GGG 0.476270 1_2:-45096221 None:intergenic
GTCTTTATAAACATTGATGA+TGG 0.479812 1_2:+45099057 Msa0072320:CDS
CTGACCCGTCGCAGGGTGGC+GGG 0.487506 1_2:-45096492 None:intergenic
ATTGCATGCAGATTTGGTTA+AGG 0.487545 1_2:+45098850 Msa0072320:CDS
TCGAGATACCCGAAGTCCTA+TGG 0.490954 1_2:+45099164 Msa0072320:CDS
CAGTCCTACGGAGTTTCTCA+TGG 0.499977 1_2:+45096697 Msa0072320:CDS
ACTAAATTTAATGTTGCTAA+GGG 0.501234 1_2:+45096631 Msa0072320:CDS
GGAGTTTCTCATGGTTCTGC+CGG 0.504337 1_2:+45096706 Msa0072320:CDS
CCACTTAGAGCTTGAACCAT+AGG 0.508217 1_2:-45099180 None:intergenic
TAAGAAAATCAATTACTTGG+CGG 0.510428 1_2:-45096381 None:intergenic
GAGCTTGAACCATAGGACTT+CGG 0.510904 1_2:-45099173 None:intergenic
AAGCATTGTGAGGAGAGAGA+AGG 0.511990 1_2:+45096541 Msa0072320:CDS
TACTTAAGACGATTATATGT+CGG 0.512593 1_2:-45096739 None:intergenic
TTAGGTGATTACTGTGACAG+AGG 0.513807 1_2:+45096349 Msa0072320:CDS
ACTTAAGACGATTATATGTC+GGG 0.514628 1_2:-45096738 None:intergenic
TGGCGGGAGGAGGTGGAGGA+AGG 0.517276 1_2:-45096476 None:intergenic
TATGCAGCTTCTACCTGTGT+TGG 0.521371 1_2:+45098463 Msa0072320:intron
CAAGGTTCTGTAAATGATGC+TGG 0.521943 1_2:+45096664 Msa0072320:CDS
AGTTGATTGCTGTCCATGCT+GGG 0.538411 1_2:+45099094 Msa0072320:CDS
TGCTGCATCGGTGACATCCA+TGG 0.540169 1_2:+45096241 Msa0072320:CDS
GCTTCTACCTGTGTTGGCAA+TGG 0.542663 1_2:+45098469 Msa0072320:intron
TTAAGGTTGATAATTGATGA+AGG 0.545370 1_2:+45099388 Msa0072320:CDS
TTTGGTTTGGGTTCATGAAG+AGG 0.545936 1_2:+45098907 Msa0072320:CDS
GCAAGGGTCGTATGCTGCAT+CGG 0.547959 1_2:+45096229 Msa0072320:CDS
GCTAAGGGTCGTGTGTATCA+AGG 0.548845 1_2:+45096646 Msa0072320:CDS
GTCCATGCTGGGTTGGAGAA+AGG 0.556867 1_2:+45099105 Msa0072320:CDS
TGCCTTTCTCCAACCCAGCA+TGG 0.558579 1_2:-45099107 None:intergenic
AACTCCGTAGGACTGAAAAG+TGG 0.560340 1_2:-45096689 None:intergenic
GAAGGGTGGTTTACTGGTGA+CGG 0.570581 1_2:+45096559 Msa0072320:CDS
ACCCGTCGCAGGGTGGCGGG+AGG 0.572448 1_2:-45096489 None:intergenic
TGTCAGAATCCCATGAAGCA+AGG 0.572451 1_2:+45096212 Msa0072320:CDS
ATCACCTAAGAAGATGATAG+TGG 0.572823 1_2:-45096335 None:intergenic
AGGCGGCGAAGGCGAAGTCA+TGG 0.581598 1_2:-45096456 None:intergenic
TTGATAATTGATGAAGGTGG+TGG 0.585017 1_2:+45099394 Msa0072320:CDS
GATTGCTGTCCATGCTGGGT+TGG 0.586278 1_2:+45099098 Msa0072320:CDS
AGATGCATGTGCAAGGCAGA+AGG 0.592829 1_2:+45096590 Msa0072320:CDS
GAAAATTCTGACCCGTCGCA+GGG 0.595212 1_2:-45096499 None:intergenic
TCAATTACTTGGCGGGTGTG+AGG 0.598041 1_2:-45096373 None:intergenic
AAGTGGTAGAAAGAATGTAT+GGG 0.600330 1_2:+45099197 Msa0072320:CDS
GTCAGAATCCCATGAAGCAA+GGG 0.600383 1_2:+45096213 Msa0072320:CDS
TGCATGTGCAAGGCAGAAGG+TGG 0.605884 1_2:+45096593 Msa0072320:CDS
ACTCCGTAGGACTGAAAAGT+GGG 0.612295 1_2:-45096688 None:intergenic
TCACGAATAATCTTCATGGA+AGG 0.612634 1_2:-45099451 None:intergenic
TATGAGAAGATGCATGTGCA+AGG 0.618350 1_2:+45096583 Msa0072320:CDS
GATGGAGTTTAAGCATTGTG+AGG 0.619332 1_2:+45096531 Msa0072320:CDS
GTGCAAGGCAGAAGGTGGAG+TGG 0.622956 1_2:+45096598 Msa0072320:CDS
CCTATGGTTCAAGCTCTAAG+TGG 0.624904 1_2:+45099180 Msa0072320:CDS
TCAACCTTAAGCCTTCAACA+TGG 0.637711 1_2:-45099375 None:intergenic
TGAGCTTGTCAATGAAACCA+TGG 0.640643 1_2:-45096258 None:intergenic
ACACATACCATTGCCAACAC+AGG 0.647877 1_2:-45098476 None:intergenic
ATGGTGACCACTAACAATGA+TGG 0.654637 1_2:-45099344 None:intergenic
ATTGTGAGGAGAGAGAAGGG+TGG 0.669873 1_2:+45096545 Msa0072320:CDS
AATTCTGACCCGTCGCAGGG+TGG 0.692479 1_2:-45096496 None:intergenic
GAATGTATGGGATATTCCAG+AGG 0.693556 1_2:+45099209 Msa0072320:CDS
ATGGTCAAATCTCGAAAACA+CGG 0.705782 1_2:+45096288 Msa0072320:CDS
AGGTTGATAATTGATGAAGG+TGG 0.714328 1_2:+45099391 Msa0072320:CDS
AGAACCATGAGAAACTCCGT+AGG 0.725251 1_2:-45096701 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACAATTTTTAAAAAGTA+AGG - chr1_2:45096808-45096827 None:intergenic 10.0%
!!! ATAATTTTGATACATTATTT+GGG - chr1_2:45097309-45097328 None:intergenic 10.0%
!!! AATAATTTTGATACATTATT+TGG - chr1_2:45097310-45097329 None:intergenic 10.0%
!! TTATTAAATGATATGTATGT+AGG + chr1_2:45097273-45097292 Msa0072320:intron 15.0%
!!! TAATTTTGATACATTATTTG+GGG - chr1_2:45097308-45097327 None:intergenic 15.0%
!!! TAATAAAACTGTTATTTCTT+TGG - chr1_2:45097666-45097685 None:intergenic 15.0%
!! ATTAAGAAATATGATAGAAT+AGG + chr1_2:45097682-45097701 Msa0072320:intron 15.0%
!!! ATTTAGATTTTAGATACAAT+TGG - chr1_2:45098269-45098288 None:intergenic 15.0%
!! TATAATCAAAAGATAGAATA+TGG - chr1_2:45098729-45098748 None:intergenic 15.0%
!! CTATAAGAAAATCAATTACT+TGG - chr1_2:45096387-45096406 None:intergenic 20.0%
!! ACTAAATTTAATGTTGCTAA+GGG + chr1_2:45096631-45096650 Msa0072320:CDS 20.0%
!! TTTAGTTAAGTGATTATGTT+TGG + chr1_2:45097034-45097053 Msa0072320:intron 20.0%
!! TTAGTTAAGTGATTATGTTT+GGG + chr1_2:45097035-45097054 Msa0072320:intron 20.0%
!!! ATTACAAAAGAGAGTTTTAA+AGG + chr1_2:45097113-45097132 Msa0072320:intron 20.0%
!!! TTACAAAAGAGAGTTTTAAA+GGG + chr1_2:45097114-45097133 Msa0072320:intron 20.0%
!! AATCTAAATAACCAAACAAA+AGG + chr1_2:45098280-45098299 Msa0072320:intron 20.0%
!! ATTGTTAATTTAATCGACAA+TGG - chr1_2:45099000-45099019 None:intergenic 20.0%
!!! ATTTTGGATTATGTTTTAAC+AGG + chr1_2:45099029-45099048 Msa0072320:intron 20.0%
! TAAGAAAATCAATTACTTGG+CGG - chr1_2:45096384-45096403 None:intergenic 25.0%
!!! AGGAAAACATGTTTTTGATT+CGG - chr1_2:45096427-45096446 None:intergenic 25.0%
! GACTAAATTTAATGTTGCTA+AGG + chr1_2:45096630-45096649 Msa0072320:CDS 25.0%
! TACTTAAGACGATTATATGT+CGG - chr1_2:45096742-45096761 None:intergenic 25.0%
!!! TACAAAAGAGAGTTTTAAAG+GGG + chr1_2:45097115-45097134 Msa0072320:intron 25.0%
!! AACAAAGATGGAGAAAATTT+TGG + chr1_2:45097162-45097181 Msa0072320:intron 25.0%
!!! TAAGTGTTTTATTTGGTTAG+TGG - chr1_2:45097446-45097465 None:intergenic 25.0%
!!! GGAAGATTAAGTGTTTTATT+TGG - chr1_2:45097453-45097472 None:intergenic 25.0%
! CATACAAAAAATCATTGTGA+GGG + chr1_2:45098029-45098048 Msa0072320:intron 25.0%
! ACATATTGCAGATAAATCAA+CGG - chr1_2:45098180-45098199 None:intergenic 25.0%
!!! AGCTTTAAATTATGTGTGAA+TGG + chr1_2:45098503-45098522 Msa0072320:intron 25.0%
! AATCCATATGCATTGTATTT+GGG - chr1_2:45098788-45098807 None:intergenic 25.0%
! AAATCCATATGCATTGTATT+TGG - chr1_2:45098789-45098808 None:intergenic 25.0%
! GAGTACTAATTTATCTATTG+CGG - chr1_2:45098815-45098834 None:intergenic 25.0%
! AGATAAATTAGTACTCTCTA+AGG + chr1_2:45098819-45098838 Msa0072320:intron 25.0%
! TAAGAAATTTCTTGCGAATT+TGG + chr1_2:45098889-45098908 Msa0072320:CDS 25.0%
! ATATGAGTATAGAAACAAAG+AGG - chr1_2:45098951-45098970 None:intergenic 25.0%
!!! TAACAATTCTGAAAGCATTT+TGG + chr1_2:45099013-45099032 Msa0072320:intron 25.0%
! GTCTTTATAAACATTGATGA+TGG + chr1_2:45099057-45099076 Msa0072320:CDS 25.0%
! TTCTTCAAATTCGAATAGAA+TGG + chr1_2:45099284-45099303 Msa0072320:intron 25.0%
!!! TTAAGGTTGATAATTGATGA+AGG + chr1_2:45099388-45099407 Msa0072320:CDS 25.0%
AAGAAAATCAATTACTTGGC+GGG - chr1_2:45096383-45096402 None:intergenic 30.0%
!! GGAAAACATGTTTTTGATTC+GGG - chr1_2:45096426-45096445 None:intergenic 30.0%
ACTTAAGACGATTATATGTC+GGG - chr1_2:45096741-45096760 None:intergenic 30.0%
! AAGATGGAGAAAATTTTGGA+TGG + chr1_2:45097166-45097185 Msa0072320:intron 30.0%
TATACAATGAGAAGCAATCT+TGG - chr1_2:45097358-45097377 None:intergenic 30.0%
ACGACTACAATCTCAATATT+AGG + chr1_2:45097419-45097438 Msa0072320:intron 30.0%
CTTCCTTACTTTAGTGAAAA+TGG + chr1_2:45097468-45097487 Msa0072320:intron 30.0%
!! AAGCCATTTTCACTAAAGTA+AGG - chr1_2:45097474-45097493 None:intergenic 30.0%
TTAGTGAAAATGGCTTCTAA+TGG + chr1_2:45097478-45097497 Msa0072320:intron 30.0%
ATTCCATAAGACAATTGTGT+GGG - chr1_2:45097591-45097610 None:intergenic 30.0%
TATTCCATAAGACAATTGTG+TGG - chr1_2:45097592-45097611 None:intergenic 30.0%
ACACAATTGTCTTATGGAAT+AGG + chr1_2:45097591-45097610 Msa0072320:intron 30.0%
! TGAATAGAGTATTCTCTCTT+AGG - chr1_2:45097737-45097756 None:intergenic 30.0%
TCTATTCAAAAACTGCTCAA+GGG + chr1_2:45097749-45097768 Msa0072320:intron 30.0%
!!! CACAATGATTTTTTGTATGC+AGG - chr1_2:45098028-45098047 None:intergenic 30.0%
GCATACAAAAAATCATTGTG+AGG + chr1_2:45098028-45098047 Msa0072320:intron 30.0%
AAAAAATCATTGTGAGGGTT+AGG + chr1_2:45098034-45098053 Msa0072320:intron 30.0%
AAAAATCATTGTGAGGGTTA+GGG + chr1_2:45098035-45098054 Msa0072320:intron 30.0%
CGGAAGAGTAAAATAAATCT+TGG - chr1_2:45098160-45098179 None:intergenic 30.0%
!! ATAACCAAACAAAAGGTGTT+AGG + chr1_2:45098287-45098306 Msa0072320:intron 30.0%
TTAGATGACAGATAACCATA+GGG - chr1_2:45098357-45098376 None:intergenic 30.0%
ATTAGATGACAGATAACCAT+AGG - chr1_2:45098358-45098377 None:intergenic 30.0%
CATCTAATTTCACTATGTAC+TGG + chr1_2:45098370-45098389 Msa0072320:intron 30.0%
GAATGGCATAGTTGAATTAT+AGG + chr1_2:45098520-45098539 Msa0072320:intron 30.0%
! CTGTTTTCGTAAGTTATCAT+AGG - chr1_2:45098680-45098699 None:intergenic 30.0%
! TGCATTGTATTTGGGTTAAT+GGG - chr1_2:45098780-45098799 None:intergenic 30.0%
! ATGCATTGTATTTGGGTTAA+TGG - chr1_2:45098781-45098800 None:intergenic 30.0%
TAACCCAAATACAATGCATA+TGG + chr1_2:45098782-45098801 Msa0072320:intron 30.0%
AGAAATTTCTTATGCTCATC+AGG - chr1_2:45098881-45098900 None:intergenic 30.0%
AATTTCTTGCGAATTTGGTT+TGG + chr1_2:45098894-45098913 Msa0072320:CDS 30.0%
! ATTTCTTGCGAATTTGGTTT+GGG + chr1_2:45098895-45098914 Msa0072320:CDS 30.0%
TAAGTGGTAGAAAGAATGTA+TGG + chr1_2:45099196-45099215 Msa0072320:CDS 30.0%
AAGTGGTAGAAAGAATGTAT+GGG + chr1_2:45099197-45099216 Msa0072320:CDS 30.0%
! ATGGCTAATTGTTTTCTTGT+AGG + chr1_2:45099303-45099322 Msa0072320:intron 30.0%
TGTATCACGAATAATCTTCA+TGG - chr1_2:45099458-45099477 None:intergenic 30.0%
TTGACAAGCTCAAAAACCTA+TGG + chr1_2:45096269-45096288 Msa0072320:CDS 35.0%
!! TGTTTTCGAGATTTGACCAT+AGG - chr1_2:45096288-45096307 None:intergenic 35.0%
ATGGTCAAATCTCGAAAACA+CGG + chr1_2:45096288-45096307 Msa0072320:CDS 35.0%
ATCACCTAAGAAGATGATAG+TGG - chr1_2:45096338-45096357 None:intergenic 35.0%
!!! ATGTTTTTGATTCGGGTAAC+GGG - chr1_2:45096419-45096438 None:intergenic 35.0%
!!! CATGTTTTTGATTCGGGTAA+CGG - chr1_2:45096420-45096439 None:intergenic 35.0%
! CAAAAACATGTTTTCCTAGC+TGG + chr1_2:45096430-45096449 Msa0072320:CDS 35.0%
! CTAGTGCGTGTTTTATATCA+CGG - chr1_2:45096921-45096940 None:intergenic 35.0%
GTTAAGTGATTATGTTTGGG+TGG + chr1_2:45097038-45097057 Msa0072320:intron 35.0%
!!! AAGAGAGTTTTAAAGGGGAA+TGG + chr1_2:45097120-45097139 Msa0072320:intron 35.0%
CTTTCCTCTCAAAACAAAGA+TGG + chr1_2:45097150-45097169 Msa0072320:intron 35.0%
!!! TTCTCCATCTTTGTTTTGAG+AGG - chr1_2:45097157-45097176 None:intergenic 35.0%
ATGAGAAGCAATCTTGGTTA+GGG - chr1_2:45097352-45097371 None:intergenic 35.0%
AATGAGAAGCAATCTTGGTT+AGG - chr1_2:45097353-45097372 None:intergenic 35.0%
ATCCAAACTTCACAAAAGTC+TGG + chr1_2:45097382-45097401 Msa0072320:intron 35.0%
GTGTCTCATATGGTCTAAAT+AGG - chr1_2:45097561-45097580 None:intergenic 35.0%
!! GGGTATAAAAGTGTCTCATA+TGG - chr1_2:45097571-45097590 None:intergenic 35.0%
ATACCCACACAATTGTCTTA+TGG + chr1_2:45097585-45097604 Msa0072320:intron 35.0%
AAATTCTACTAGTGCAGCTT+TGG - chr1_2:45097639-45097658 None:intergenic 35.0%
! TAGAGTATTCTCTCTTAGGA+AGG - chr1_2:45097733-45097752 None:intergenic 35.0%
CTCTATTCAAAAACTGCTCA+AGG + chr1_2:45097748-45097767 Msa0072320:intron 35.0%
CTATTCAAAAACTGCTCAAG+GGG + chr1_2:45097750-45097769 Msa0072320:intron 35.0%
!! GACTAGGTTGATTGATTCTA+GGG - chr1_2:45097870-45097889 None:intergenic 35.0%
!! AGACTAGGTTGATTGATTCT+AGG - chr1_2:45097871-45097890 None:intergenic 35.0%
GTTACTTAGAAATGAAGAGG+CGG - chr1_2:45098006-45098025 None:intergenic 35.0%
CAGGTTACTTAGAAATGAAG+AGG - chr1_2:45098009-45098028 None:intergenic 35.0%
ATGGATGCTTGATTCATTCA+CGG + chr1_2:45098108-45098127 Msa0072320:intron 35.0%
ATGCATAAGAAGCCAAACAA+AGG + chr1_2:45098201-45098220 Msa0072320:intron 35.0%
TAAGAAGCCAAACAAAGGAT+TGG + chr1_2:45098206-45098225 Msa0072320:intron 35.0%
AACGAATCCAATCCTTTGTT+TGG - chr1_2:45098216-45098235 None:intergenic 35.0%
TAGATGACAGATAACCATAG+GGG - chr1_2:45098356-45098375 None:intergenic 35.0%
CAATTCATTGCATGCAGATT+TGG + chr1_2:45098844-45098863 Msa0072320:CDS 35.0%
! ATTGCATGCAGATTTGGTTA+AGG + chr1_2:45098850-45098869 Msa0072320:CDS 35.0%
AGTTCAACCATCATTGTTAG+TGG + chr1_2:45099337-45099356 Msa0072320:CDS 35.0%
!! AGGTTGATAATTGATGAAGG+TGG + chr1_2:45099391-45099410 Msa0072320:CDS 35.0%
! TTGATAATTGATGAAGGTGG+TGG + chr1_2:45099394-45099413 Msa0072320:CDS 35.0%
GGAAGAATAATTGCAGCTAT+TGG - chr1_2:45099433-45099452 None:intergenic 35.0%
TCACGAATAATCTTCATGGA+AGG - chr1_2:45099454-45099473 None:intergenic 35.0%
TGAGCTTGTCAATGAAACCA+TGG - chr1_2:45096261-45096280 None:intergenic 40.0%
!! GTGGCTGTTTTGAATTGTGA+TGG - chr1_2:45096319-45096338 None:intergenic 40.0%
ACAGCCACTATCATCTTCTT+AGG + chr1_2:45096331-45096350 Msa0072320:CDS 40.0%
TTAGGTGATTACTGTGACAG+AGG + chr1_2:45096349-45096368 Msa0072320:CDS 40.0%
! GATGGAGTTTAAGCATTGTG+AGG + chr1_2:45096531-45096550 Msa0072320:CDS 40.0%
TATGAGAAGATGCATGTGCA+AGG + chr1_2:45096583-45096602 Msa0072320:CDS 40.0%
CAAGGTTCTGTAAATGATGC+TGG + chr1_2:45096664-45096683 Msa0072320:CDS 40.0%
ATATGTCGGGACATACTTAC+CGG - chr1_2:45096728-45096747 None:intergenic 40.0%
AACACAAACTAGTGCGTGTT+TGG - chr1_2:45096986-45097005 None:intergenic 40.0%
!!! AGAGTTTTAAAGGGGAATGG+AGG + chr1_2:45097123-45097142 Msa0072320:intron 40.0%
TTTGGATGGTCACAACGATT+TGG + chr1_2:45097180-45097199 Msa0072320:intron 40.0%
! GACCAGACTTTTGTGAAGTT+TGG - chr1_2:45097387-45097406 None:intergenic 40.0%
! CAGCTTTGGCAAGACTAAAA+AGG - chr1_2:45097625-45097644 None:intergenic 40.0%
TAGGAGAAAATCTCTCCTCA+AGG + chr1_2:45097701-45097720 Msa0072320:intron 40.0%
AGGAGAAAATCTCTCCTCAA+GGG + chr1_2:45097702-45097721 Msa0072320:intron 40.0%
TTGACCTTAGCTCAAACTCA+CGG - chr1_2:45097906-45097925 None:intergenic 40.0%
! TTGCTCTTGTAGTCCTTTTG+TGG - chr1_2:45097955-45097974 None:intergenic 40.0%
CAAAAGGACTACAAGAGCAA+AGG + chr1_2:45097955-45097974 Msa0072320:intron 40.0%
! TCATTCACGGTTTTGCAATG+AGG + chr1_2:45098121-45098140 Msa0072320:intron 40.0%
! CATTCACGGTTTTGCAATGA+GGG + chr1_2:45098122-45098141 Msa0072320:intron 40.0%
! GTTTTGCAATGAGGGCAATA+AGG + chr1_2:45098130-45098149 Msa0072320:intron 40.0%
ACAAAGGATTGGATTCGTTC+TGG + chr1_2:45098217-45098236 Msa0072320:intron 40.0%
! AGTGCCTAACACCTTTTGTT+TGG - chr1_2:45098294-45098313 None:intergenic 40.0%
TGTGCAAAGACTCAAGTTCA+CGG + chr1_2:45098325-45098344 Msa0072320:intron 40.0%
!! TTTGGTTTGGGTTCATGAAG+AGG + chr1_2:45098907-45098926 Msa0072320:CDS 40.0%
GAATGTATGGGATATTCCAG+AGG + chr1_2:45099209-45099228 Msa0072320:CDS 40.0%
ATGGTGACCACTAACAATGA+TGG - chr1_2:45099347-45099366 None:intergenic 40.0%
! CTTCAACATGGAGTTTTGCA+TGG - chr1_2:45099366-45099385 None:intergenic 40.0%
CATGCAAAACTCCATGTTGA+AGG + chr1_2:45099364-45099383 Msa0072320:CDS 40.0%
AACTCCATGTTGAAGGCTTA+AGG + chr1_2:45099371-45099390 Msa0072320:CDS 40.0%
TCAACCTTAAGCCTTCAACA+TGG - chr1_2:45099378-45099397 None:intergenic 40.0%
TGTCAGAATCCCATGAAGCA+AGG + chr1_2:45096212-45096231 Msa0072320:CDS 45.0%
GTCAGAATCCCATGAAGCAA+GGG + chr1_2:45096213-45096232 Msa0072320:CDS 45.0%
!!! TTTTGATTCGGGTAACGGGT+TGG - chr1_2:45096415-45096434 None:intergenic 45.0%
! GACGGGTCAGAATTTTCTGA+GGG + chr1_2:45096505-45096524 Msa0072320:CDS 45.0%
! ACGGGTCAGAATTTTCTGAG+GGG + chr1_2:45096506-45096525 Msa0072320:CDS 45.0%
!! AGAATTTTCTGAGGGGTGGA+TGG + chr1_2:45096513-45096532 Msa0072320:CDS 45.0%
! AAGCATTGTGAGGAGAGAGA+AGG + chr1_2:45096541-45096560 Msa0072320:CDS 45.0%
AGCATTGTGAGGAGAGAGAA+GGG + chr1_2:45096542-45096561 Msa0072320:CDS 45.0%
ACTCCGTAGGACTGAAAAGT+GGG - chr1_2:45096691-45096710 None:intergenic 45.0%
AACTCCGTAGGACTGAAAAG+TGG - chr1_2:45096692-45096711 None:intergenic 45.0%
AGAACCATGAGAAACTCCGT+AGG - chr1_2:45096704-45096723 None:intergenic 45.0%
TTAGGAAGGAGAAACCCTTG+AGG - chr1_2:45097719-45097738 None:intergenic 45.0%
CTTATCCCCGAAATATCCTC+CGG + chr1_2:45097781-45097800 Msa0072320:intron 45.0%
TTATCCCCGAAATATCCTCC+GGG + chr1_2:45097782-45097801 Msa0072320:intron 45.0%
AAGTCTCCCGGAGGATATTT+CGG - chr1_2:45097791-45097810 None:intergenic 45.0%
AGCTCAAACTCACGGATACA+TGG - chr1_2:45097898-45097917 None:intergenic 45.0%
GTATCCGTGAGTTTGAGCTA+AGG + chr1_2:45097899-45097918 Msa0072320:intron 45.0%
!! TCCTTTTGTGGCTGAGTTGA+GGG - chr1_2:45097943-45097962 None:intergenic 45.0%
AGAGATTGCCCTCAGGAAAA+GGG - chr1_2:45098082-45098101 None:intergenic 45.0%
!!! TGTTTTGAGAGATTGCCCTC+AGG - chr1_2:45098089-45098108 None:intergenic 45.0%
GAGGGCAATCTCTCAAAACA+TGG + chr1_2:45098089-45098108 Msa0072320:intron 45.0%
TATGCAGCTTCTACCTGTGT+TGG + chr1_2:45098463-45098482 Msa0072320:intron 45.0%
ACACATACCATTGCCAACAC+AGG - chr1_2:45098479-45098498 None:intergenic 45.0%
! AAGTTGATTGCTGTCCATGC+TGG + chr1_2:45099093-45099112 Msa0072320:CDS 45.0%
AGTTGATTGCTGTCCATGCT+GGG + chr1_2:45099094-45099113 Msa0072320:CDS 45.0%
AGCTTGAACCATAGGACTTC+GGG - chr1_2:45099175-45099194 None:intergenic 45.0%
GAGCTTGAACCATAGGACTT+CGG - chr1_2:45099176-45099195 None:intergenic 45.0%
CCACTTAGAGCTTGAACCAT+AGG - chr1_2:45099183-45099202 None:intergenic 45.0%
!! CCTATGGTTCAAGCTCTAAG+TGG + chr1_2:45099180-45099199 Msa0072320:CDS 45.0%
AAGAAGCAAGCTATCACCTC+TGG - chr1_2:45099228-45099247 None:intergenic 45.0%
GCATACGACCCTTGCTTCAT+GGG - chr1_2:45096224-45096243 None:intergenic 50.0%
AGCATACGACCCTTGCTTCA+TGG - chr1_2:45096225-45096244 None:intergenic 50.0%
! TCAATTACTTGGCGGGTGTG+AGG - chr1_2:45096376-45096395 None:intergenic 50.0%
CGAAGTCATGGTTTCCAGCT+AGG - chr1_2:45096447-45096466 None:intergenic 50.0%
GAAAATTCTGACCCGTCGCA+GGG - chr1_2:45096502-45096521 None:intergenic 50.0%
AGAAAATTCTGACCCGTCGC+AGG - chr1_2:45096503-45096522 None:intergenic 50.0%
! CGACGGGTCAGAATTTTCTG+AGG + chr1_2:45096504-45096523 Msa0072320:CDS 50.0%
!! GGTCAGAATTTTCTGAGGGG+TGG + chr1_2:45096509-45096528 Msa0072320:CDS 50.0%
ATTGTGAGGAGAGAGAAGGG+TGG + chr1_2:45096545-45096564 Msa0072320:CDS 50.0%
GAGAGAGAAGGGTGGTTTAC+TGG + chr1_2:45096553-45096572 Msa0072320:CDS 50.0%
GAAGGGTGGTTTACTGGTGA+CGG + chr1_2:45096559-45096578 Msa0072320:CDS 50.0%
AGATGCATGTGCAAGGCAGA+AGG + chr1_2:45096590-45096609 Msa0072320:CDS 50.0%
GCTAAGGGTCGTGTGTATCA+AGG + chr1_2:45096646-45096665 Msa0072320:CDS 50.0%
!! GGTCCCACTTTTCAGTCCTA+CGG + chr1_2:45096685-45096704 Msa0072320:CDS 50.0%
CAGTCCTACGGAGTTTCTCA+TGG + chr1_2:45096697-45096716 Msa0072320:CDS 50.0%
! GGAGTTTCTCATGGTTCTGC+CGG + chr1_2:45096706-45096725 Msa0072320:CDS 50.0%
AGTCTCCCGGAGGATATTTC+GGG - chr1_2:45097790-45097809 None:intergenic 50.0%
CGGATACATGGCAGTAGACT+AGG - chr1_2:45097886-45097905 None:intergenic 50.0%
!!! GAGTTGAGGGGAGTTTTGGA+AGG - chr1_2:45097930-45097949 None:intergenic 50.0%
!! CCTTTTGTGGCTGAGTTGAG+GGG - chr1_2:45097942-45097961 None:intergenic 50.0%
! GTCCTTTTGTGGCTGAGTTG+AGG - chr1_2:45097944-45097963 None:intergenic 50.0%
GAAGAGGCGGTCTTGATATG+TGG - chr1_2:45097993-45098012 None:intergenic 50.0%
GAGAGATTGCCCTCAGGAAA+AGG - chr1_2:45098083-45098102 None:intergenic 50.0%
AGTTCACGGTATAGCCCCTA+TGG + chr1_2:45098339-45098358 Msa0072320:intron 50.0%
! GCTTCTACCTGTGTTGGCAA+TGG + chr1_2:45098469-45098488 Msa0072320:intron 50.0%
! GGTTTGGGTTCATGAAGAGG+TGG + chr1_2:45098910-45098929 Msa0072320:intron 50.0%
TCGAGATACCCGAAGTCCTA+TGG + chr1_2:45099164-45099183 Msa0072320:CDS 50.0%
GCAAGGGTCGTATGCTGCAT+CGG + chr1_2:45096229-45096248 Msa0072320:CDS 55.0%
! TGCTGCATCGGTGACATCCA+TGG + chr1_2:45096241-45096260 Msa0072320:CDS 55.0%
TGCATGTGCAAGGCAGAAGG+TGG + chr1_2:45096593-45096612 Msa0072320:CDS 55.0%
GTCTCCCGGAGGATATTTCG+GGG - chr1_2:45097789-45097808 None:intergenic 55.0%
GCACACAGGAGAAAGTCTCC+CGG - chr1_2:45097803-45097822 None:intergenic 55.0%
!! GGCTGAGTTGAGGGGAGTTT+TGG - chr1_2:45097934-45097953 None:intergenic 55.0%
CCCCTCAACTCAGCCACAAA+AGG + chr1_2:45097939-45097958 Msa0072320:intron 55.0%
! GCCACACACCCTTTTCCTGA+GGG + chr1_2:45098071-45098090 Msa0072320:intron 55.0%
GATTGCTGTCCATGCTGGGT+TGG + chr1_2:45099098-45099117 Msa0072320:CDS 55.0%
! GTCCATGCTGGGTTGGAGAA+AGG + chr1_2:45099105-45099124 Msa0072320:CDS 55.0%
TGCCTTTCTCCAACCCAGCA+TGG - chr1_2:45099110-45099129 None:intergenic 55.0%
AATTCTGACCCGTCGCAGGG+TGG - chr1_2:45096499-45096518 None:intergenic 60.0%
GTGCAAGGCAGAAGGTGGAG+TGG + chr1_2:45096598-45096617 Msa0072320:CDS 60.0%
CACAGGAGAAAGTCTCCCGG+AGG - chr1_2:45097800-45097819 None:intergenic 60.0%
GGGTTAGGGTGAACAAGCCG+CGG + chr1_2:45098049-45098068 Msa0072320:intron 60.0%
! AGGAAAAGGGTGTGTGGCCG+CGG - chr1_2:45098069-45098088 None:intergenic 60.0%
! GGCCACACACCCTTTTCCTG+AGG + chr1_2:45098070-45098089 Msa0072320:intron 60.0%
! GCCCTCAGGAAAAGGGTGTG+TGG - chr1_2:45098075-45098094 None:intergenic 60.0%
AGGCGGCGAAGGCGAAGTCA+TGG - chr1_2:45096459-45096478 None:intergenic 65.0%
ATATGCCGCGATCCGCGCGA+GGG - chr1_2:45097829-45097848 None:intergenic 65.0%
TATATGCCGCGATCCGCGCG+AGG - chr1_2:45097830-45097849 None:intergenic 65.0%
GCGCGGATCGCGGCATATAC+AGG + chr1_2:45097831-45097850 Msa0072320:intron 65.0%
GAGGTGGAGGAAGGCGGCGA+AGG - chr1_2:45096470-45096489 None:intergenic 70.0%
CGGGAGGAGGTGGAGGAAGG+CGG - chr1_2:45096476-45096495 None:intergenic 70.0%
TGGCGGGAGGAGGTGGAGGA+AGG - chr1_2:45096479-45096498 None:intergenic 70.0%
TCTGACCCGTCGCAGGGTGG+CGG - chr1_2:45096496-45096515 None:intergenic 70.0%
CCTGTGTGCACACCCTCGCG+CGG + chr1_2:45097814-45097833 Msa0072320:intron 70.0%
!! AGGGTGGCGGGAGGAGGTGG+AGG - chr1_2:45096483-45096502 None:intergenic 75.0%
CTCCTCCCGCCACCCTGCGA+CGG + chr1_2:45096487-45096506 Msa0072320:CDS 75.0%
TCCTCCCGCCACCCTGCGAC+GGG + chr1_2:45096488-45096507 Msa0072320:CDS 75.0%
CTGACCCGTCGCAGGGTGGC+GGG - chr1_2:45096495-45096514 None:intergenic 75.0%
! CCGCGCGAGGGTGTGCACAC+AGG - chr1_2:45097817-45097836 None:intergenic 75.0%
GCACACCCTCGCGCGGATCG+CGG + chr1_2:45097821-45097840 Msa0072320:intron 75.0%
!!! CGCAGGGTGGCGGGAGGAGG+TGG - chr1_2:45096486-45096505 None:intergenic 80.0%
!!! CGTCGCAGGGTGGCGGGAGG+AGG - chr1_2:45096489-45096508 None:intergenic 80.0%
!!! ACCCGTCGCAGGGTGGCGGG+AGG - chr1_2:45096492-45096511 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 45096211 45099495 45096211 ID=Msa0072320;Name=Msa0072320
chr1_2 mRNA 45096211 45099495 45096211 ID=Msa0072320-mRNA-1;Parent=Msa0072320;Name=Msa0072320-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.8|0.5|0.6|5|0|345
chr1_2 exon 45096211 45096777 45096211 ID=Msa0072320-mRNA-1:exon:13611;Parent=Msa0072320-mRNA-1
chr1_2 exon 45098470 45098490 45098470 ID=Msa0072320-mRNA-1:exon:13612;Parent=Msa0072320-mRNA-1
chr1_2 exon 45098830 45098928 45098830 ID=Msa0072320-mRNA-1:exon:13613;Parent=Msa0072320-mRNA-1
chr1_2 exon 45099051 45099230 45099051 ID=Msa0072320-mRNA-1:exon:13614;Parent=Msa0072320-mRNA-1
chr1_2 exon 45099325 45099495 45099325 ID=Msa0072320-mRNA-1:exon:13615;Parent=Msa0072320-mRNA-1
chr1_2 CDS 45096211 45096777 45096211 ID=Msa0072320-mRNA-1:cds;Parent=Msa0072320-mRNA-1
chr1_2 CDS 45098470 45098490 45098470 ID=Msa0072320-mRNA-1:cds;Parent=Msa0072320-mRNA-1
chr1_2 CDS 45098830 45098928 45098830 ID=Msa0072320-mRNA-1:cds;Parent=Msa0072320-mRNA-1
chr1_2 CDS 45099051 45099230 45099051 ID=Msa0072320-mRNA-1:cds;Parent=Msa0072320-mRNA-1
chr1_2 CDS 45099325 45099495 45099325 ID=Msa0072320-mRNA-1:cds;Parent=Msa0072320-mRNA-1
Gene Sequence

>Msa0072320

ATGTCAGAATCCCATGAAGCAAGGGTCGTATGCTGCATCGGTGACATCCATGGTTTCATTGACAAGCTCAAAAACCTATGGTCAAATCTCGAAAACACGGTCGAACCATCACAATTCAAAACAGCCACTATCATCTTCTTAGGTGATTACTGTGACAGAGGACCTCACACCCGCCAAGTAATTGATTTTCTTATAGCATTACCAACCCGTTACCCGAATCAAAAACATGTTTTCCTAGCTGGAAACCATGACTTCGCCTTCGCCGCCTTCCTCCACCTCCTCCCGCCACCCTGCGACGGGTCAGAATTTTCTGAGGGGTGGATGGAGTTTAAGCATTGTGAGGAGAGAGAAGGGTGGTTTACTGGTGACGGATATGAGAAGATGCATGTGCAAGGCAGAAGGTGGAGTGGAAGTATAAAGACTAAATTTAATGTTGCTAAGGGTCGTGTGTATCAAGGTTCTGTAAATGATGCTGGTCCCACTTTTCAGTCCTACGGAGTTTCTCATGGTTCTGCCGGTAAGTATGTCCCGACATATAATCGTCTTAAGTATATGTTTGATATCATACTTCTACCTGTGTTGGCAATGTACTCTCTAAGGAGCAATTCATTGCATGCAGATTTGGTTAAGGCAGTTCCTGATGAGCATAAGAAATTTCTTGCGAATTTGGTTTGGGTTCATGAAGAGGATGATGTCTTTATAAACATTGATGATGGAGTTAAGTGCTACAAGTTGATTGCTGTCCATGCTGGGTTGGAGAAAGGCATAGATGTGAAAGAACAGATGAAAAATTTGAAAGCTCGAGATACCCGAAGTCCTATGGTTCAAGCTCTAAGTGGTAGAAAGAATGTATGGGATATTCCAGAGGAACTAAGTGCAAGTTCAACCATCATTGTTAGTGGTCACCATGCAAAACTCCATGTTGAAGGCTTAAGGTTGATAATTGATGAAGGTGGTGGACACAAAGATAAACCAATAGCTGCAATTATTCTTCCTTCCATGAAGATTATTCGTGATACAGATATATTAGCAAAATAG

Protein sequence

>Msa0072320

MSESHEARVVCCIGDIHGFIDKLKNLWSNLENTVEPSQFKTATIIFLGDYCDRGPHTRQVIDFLIALPTRYPNQKHVFLAGNHDFAFAAFLHLLPPPCDGSEFSEGWMEFKHCEEREGWFTGDGYEKMHVQGRRWSGSIKTKFNVAKGRVYQGSVNDAGPTFQSYGVSHGSAGKYVPTYNRLKYMFDIILLPVLAMYSLRSNSLHADLVKAVPDEHKKFLANLVWVHEEDDVFINIDDGVKCYKLIAVHAGLEKGIDVKEQMKNLKARDTRSPMVQALSGRKNVWDIPEELSASSTIIVSGHHAKLHVEGLRLIIDEGGGHKDKPIAAIILPSMKIIRDTDILAK*